Multiple sequence alignment - TraesCS7D01G442200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G442200 chr7D 100.000 4156 0 0 2685 6840 561701791 561705946 0.000000e+00 7675.0
1 TraesCS7D01G442200 chr7D 100.000 2594 0 0 1 2594 561699107 561701700 0.000000e+00 4791.0
2 TraesCS7D01G442200 chr7D 85.294 816 78 26 989 1779 561758251 561757453 0.000000e+00 804.0
3 TraesCS7D01G442200 chr7D 84.105 648 79 17 5336 5976 561756343 561755713 7.590000e-169 604.0
4 TraesCS7D01G442200 chr7D 97.619 126 3 0 2686 2811 561701575 561701700 4.150000e-52 217.0
5 TraesCS7D01G442200 chr7D 97.619 126 3 0 2469 2594 561701792 561701917 4.150000e-52 217.0
6 TraesCS7D01G442200 chr7D 95.726 117 5 0 2803 2919 561701791 561701907 9.060000e-44 189.0
7 TraesCS7D01G442200 chr7D 95.726 117 5 0 2685 2801 561701909 561702025 9.060000e-44 189.0
8 TraesCS7D01G442200 chr7D 94.167 120 7 0 2800 2919 561701571 561701690 4.210000e-42 183.0
9 TraesCS7D01G442200 chr7D 94.167 120 7 0 2465 2584 561701906 561702025 4.210000e-42 183.0
10 TraesCS7D01G442200 chr7D 76.351 296 49 15 3684 3967 63952021 63952307 9.250000e-29 139.0
11 TraesCS7D01G442200 chr7D 88.235 85 6 3 2491 2574 561757424 561757343 1.570000e-16 99.0
12 TraesCS7D01G442200 chr7A 93.137 1938 100 13 4775 6696 646482545 646484465 0.000000e+00 2811.0
13 TraesCS7D01G442200 chr7A 93.306 1733 87 11 872 2594 646477382 646479095 0.000000e+00 2531.0
14 TraesCS7D01G442200 chr7A 91.341 1894 92 34 2907 4761 646480373 646482233 0.000000e+00 2523.0
15 TraesCS7D01G442200 chr7A 83.473 956 111 34 870 1794 646585578 646584639 0.000000e+00 846.0
16 TraesCS7D01G442200 chr7A 83.497 612 81 13 5357 5964 646583660 646583065 2.790000e-153 553.0
17 TraesCS7D01G442200 chr7A 83.991 431 49 10 1 416 646475611 646476036 4.970000e-106 396.0
18 TraesCS7D01G442200 chr7A 90.043 231 14 2 2686 2916 646478970 646479191 2.410000e-74 291.0
19 TraesCS7D01G442200 chr7A 92.517 147 10 1 6695 6840 646486192 646486338 6.950000e-50 209.0
20 TraesCS7D01G442200 chr7A 92.241 116 9 0 2804 2919 646478970 646479085 1.530000e-36 165.0
21 TraesCS7D01G442200 chr7A 95.652 92 4 0 2707 2798 646479100 646479191 1.540000e-31 148.0
22 TraesCS7D01G442200 chr7A 96.512 86 3 0 2490 2575 646479100 646479185 7.150000e-30 143.0
23 TraesCS7D01G442200 chr7A 88.235 85 6 3 2491 2574 646584605 646584524 1.570000e-16 99.0
24 TraesCS7D01G442200 chr7B 89.892 2038 151 26 3970 5976 610481059 610483072 0.000000e+00 2571.0
25 TraesCS7D01G442200 chr7B 88.734 1580 123 18 1 1546 610477561 610479119 0.000000e+00 1881.0
26 TraesCS7D01G442200 chr7B 85.353 949 100 30 870 1794 610737894 610736961 0.000000e+00 946.0
27 TraesCS7D01G442200 chr7B 85.627 654 70 14 5336 5979 610736083 610735444 0.000000e+00 665.0
28 TraesCS7D01G442200 chr7B 88.437 467 47 6 2803 3267 610479942 610480403 2.160000e-154 556.0
29 TraesCS7D01G442200 chr7B 81.575 673 75 21 1913 2582 610479431 610480057 1.700000e-140 510.0
30 TraesCS7D01G442200 chr7B 94.024 251 12 3 1516 1763 610479125 610479375 1.800000e-100 377.0
31 TraesCS7D01G442200 chr7B 78.404 426 58 22 2072 2491 185030580 185030183 5.300000e-61 246.0
32 TraesCS7D01G442200 chr7B 82.731 249 21 14 3542 3770 610480406 610480652 1.160000e-47 202.0
33 TraesCS7D01G442200 chr7B 90.517 116 10 1 2685 2799 610479942 610480057 1.190000e-32 152.0
34 TraesCS7D01G442200 chr7B 90.000 70 5 1 2491 2560 610736928 610736861 9.450000e-14 89.8
35 TraesCS7D01G442200 chrUn 87.026 501 59 6 6345 6840 112529299 112528800 1.670000e-155 560.0
36 TraesCS7D01G442200 chrUn 86.364 66 4 4 4606 4668 239737616 239737679 4.430000e-07 67.6
37 TraesCS7D01G442200 chrUn 86.364 66 4 4 4606 4668 383689774 383689837 4.430000e-07 67.6
38 TraesCS7D01G442200 chr6A 82.995 641 84 12 6209 6840 45365962 45366586 2.160000e-154 556.0
39 TraesCS7D01G442200 chr6A 85.662 272 35 3 516 785 607984238 607984507 4.040000e-72 283.0
40 TraesCS7D01G442200 chr6A 79.348 276 49 7 5575 5845 107684773 107684501 3.260000e-43 187.0
41 TraesCS7D01G442200 chr6A 84.444 90 10 1 3891 3980 555973601 555973516 1.220000e-12 86.1
42 TraesCS7D01G442200 chr6A 83.784 74 12 0 3893 3966 48630517 48630590 3.420000e-08 71.3
43 TraesCS7D01G442200 chr6B 86.469 473 59 3 6369 6840 78448716 78449184 1.320000e-141 514.0
44 TraesCS7D01G442200 chr6B 78.261 276 49 9 5569 5840 171708089 171707821 4.240000e-37 167.0
45 TraesCS7D01G442200 chr6B 77.852 298 44 19 2980 3267 20665907 20665622 1.530000e-36 165.0
46 TraesCS7D01G442200 chr6B 97.436 39 1 0 3936 3974 87051036 87051074 4.430000e-07 67.6
47 TraesCS7D01G442200 chr5B 83.587 329 41 11 1988 2308 417662839 417663162 5.190000e-76 296.0
48 TraesCS7D01G442200 chr5B 84.043 282 40 4 528 807 374453942 374453664 4.070000e-67 267.0
49 TraesCS7D01G442200 chr5B 74.510 255 59 4 4477 4729 121249515 121249765 9.380000e-19 106.0
50 TraesCS7D01G442200 chr4A 87.059 255 29 3 533 785 611938074 611937822 1.120000e-72 285.0
51 TraesCS7D01G442200 chr4A 86.100 259 32 3 528 784 200056279 200056023 6.760000e-70 276.0
52 TraesCS7D01G442200 chr4A 84.643 280 37 5 522 798 503622064 503622340 2.430000e-69 274.0
53 TraesCS7D01G442200 chr4A 76.316 266 48 15 2999 3254 621004620 621004360 2.000000e-25 128.0
54 TraesCS7D01G442200 chr2A 86.486 259 30 4 528 784 594500457 594500202 5.220000e-71 279.0
55 TraesCS7D01G442200 chr1A 86.047 258 34 1 528 785 68377858 68378113 6.760000e-70 276.0
56 TraesCS7D01G442200 chr1A 86.885 61 5 3 1171 1230 60537496 60537554 1.590000e-06 65.8
57 TraesCS7D01G442200 chr4D 83.495 309 33 11 1996 2291 51607763 51608066 8.740000e-69 272.0
58 TraesCS7D01G442200 chr4D 84.436 257 34 4 3295 3550 8648751 8648500 1.470000e-61 248.0
59 TraesCS7D01G442200 chr4D 79.479 307 42 11 3693 3987 487376798 487376501 1.500000e-46 198.0
60 TraesCS7D01G442200 chr4D 86.765 68 5 4 1166 1233 81666270 81666207 9.520000e-09 73.1
61 TraesCS7D01G442200 chr3B 84.701 268 38 3 501 766 34374231 34374497 1.460000e-66 265.0
62 TraesCS7D01G442200 chr3B 82.534 292 39 9 3273 3559 161088217 161088501 5.300000e-61 246.0
63 TraesCS7D01G442200 chr3B 81.908 304 40 13 1981 2275 167058366 167058663 6.850000e-60 243.0
64 TraesCS7D01G442200 chr3B 76.825 315 61 11 2962 3270 242460334 242460642 4.240000e-37 167.0
65 TraesCS7D01G442200 chr3B 75.000 312 60 17 2963 3266 31061197 31061498 2.000000e-25 128.0
66 TraesCS7D01G442200 chr3D 81.155 329 38 18 1997 2310 57174561 57174242 6.850000e-60 243.0
67 TraesCS7D01G442200 chr2D 83.083 266 40 3 3279 3543 539169545 539169806 3.190000e-58 237.0
68 TraesCS7D01G442200 chr2D 83.088 272 33 9 3279 3547 158246198 158245937 1.150000e-57 235.0
69 TraesCS7D01G442200 chr2D 85.507 138 12 7 3116 3250 422513778 422513910 3.330000e-28 137.0
70 TraesCS7D01G442200 chr2D 93.182 44 3 0 1182 1225 13753313 13753270 1.590000e-06 65.8
71 TraesCS7D01G442200 chr1D 82.545 275 40 6 3279 3551 318556555 318556823 1.150000e-57 235.0
72 TraesCS7D01G442200 chr1D 91.358 81 5 2 3896 3976 69199194 69199116 7.250000e-20 110.0
73 TraesCS7D01G442200 chr1D 86.885 61 5 3 1171 1230 62564158 62564216 1.590000e-06 65.8
74 TraesCS7D01G442200 chr3A 83.019 265 37 5 3279 3543 69662792 69662536 4.120000e-57 233.0
75 TraesCS7D01G442200 chr3A 76.712 219 31 12 2101 2310 122532847 122532640 3.370000e-18 104.0
76 TraesCS7D01G442200 chr3A 87.755 49 6 0 317 365 76180605 76180653 2.660000e-04 58.4
77 TraesCS7D01G442200 chr1B 82.353 272 42 3 3273 3543 578099068 578098802 1.480000e-56 231.0
78 TraesCS7D01G442200 chr5A 82.288 271 43 3 3273 3543 563328995 563329260 5.340000e-56 230.0
79 TraesCS7D01G442200 chr5A 79.479 307 37 21 1997 2290 622129397 622129104 1.950000e-45 195.0
80 TraesCS7D01G442200 chr5A 76.374 182 37 4 4550 4729 115095212 115095389 7.300000e-15 93.5
81 TraesCS7D01G442200 chr2B 89.831 177 17 1 1997 2173 748585840 748586015 6.900000e-55 226.0
82 TraesCS7D01G442200 chr2B 80.408 245 39 7 3007 3245 423838795 423839036 1.960000e-40 178.0
83 TraesCS7D01G442200 chr2B 81.461 178 24 9 3097 3270 151102292 151102464 3.330000e-28 137.0
84 TraesCS7D01G442200 chr4B 82.432 222 24 10 3765 3974 615142639 615142857 5.450000e-41 180.0
85 TraesCS7D01G442200 chr5D 77.778 162 27 6 4550 4709 112244228 112244382 2.630000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G442200 chr7D 561699107 561705946 6839 False 3216.500000 7675 97.946500 1 6840 4 chr7D.!!$F2 6839
1 TraesCS7D01G442200 chr7D 561755713 561758251 2538 True 502.333333 804 85.878000 989 5976 3 chr7D.!!$R1 4987
2 TraesCS7D01G442200 chr7A 646475611 646486338 10727 False 1024.111111 2811 92.082222 1 6840 9 chr7A.!!$F1 6839
3 TraesCS7D01G442200 chr7A 646583065 646585578 2513 True 499.333333 846 85.068333 870 5964 3 chr7A.!!$R1 5094
4 TraesCS7D01G442200 chr7B 610477561 610483072 5511 False 892.714286 2571 87.987143 1 5976 7 chr7B.!!$F1 5975
5 TraesCS7D01G442200 chr7B 610735444 610737894 2450 True 566.933333 946 86.993333 870 5979 3 chr7B.!!$R2 5109
6 TraesCS7D01G442200 chr6A 45365962 45366586 624 False 556.000000 556 82.995000 6209 6840 1 chr6A.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
537 555 0.110295 TATGGCCGATCATTGTGGGG 59.890 55.000 0.00 0.00 0.0 4.96 F
1550 2574 0.108992 ACACAGCATACACGTACGGG 60.109 55.000 17.69 17.69 0.0 5.28 F
2750 3832 0.168788 GCACGTTGATGGTGATGTGG 59.831 55.000 0.00 0.00 37.6 4.17 F
2826 3908 0.032912 TGACATGTAGCCGGTCCCTA 60.033 55.000 1.90 0.00 0.0 3.53 F
2830 3912 0.111832 ATGTAGCCGGTCCCTATCGA 59.888 55.000 1.90 0.00 0.0 3.59 F
2846 3928 1.149361 TCGATTATTGGCACCGACGC 61.149 55.000 0.00 0.00 0.0 5.19 F
2860 3942 1.226101 GACGCGTGCATGTTGATGG 60.226 57.895 20.70 0.00 0.0 3.51 F
2862 3944 1.512522 CGCGTGCATGTTGATGGTG 60.513 57.895 7.93 0.00 0.0 4.17 F
4289 6875 2.501316 GCCTAGCCCCATTTTGTGATTT 59.499 45.455 0.00 0.00 0.0 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1641 2711 0.179062 GCCTCCTGCTTGATCGACAT 60.179 55.000 0.00 0.00 36.87 3.06 R
2807 3889 0.032912 TAGGGACCGGCTACATGTCA 60.033 55.000 0.00 0.00 0.00 3.58 R
3612 5894 0.319297 AGGACTTTCGGTTCCGAACG 60.319 55.000 23.44 22.91 46.12 3.95 R
3960 6270 1.468127 CACACACACACACACACATGT 59.532 47.619 0.00 0.00 40.80 3.21 R
3961 6271 1.468127 ACACACACACACACACACATG 59.532 47.619 0.00 0.00 0.00 3.21 R
3962 6272 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21 R
4034 6600 2.267642 GGTGCACGGCTACCATGA 59.732 61.111 11.45 0.00 36.94 3.07 R
4332 6919 4.022068 TGAAAATTGACACATCTGGCCTTC 60.022 41.667 3.32 0.00 0.00 3.46 R
6195 9312 0.108424 GCTCATGCTCAGGTCTCGTT 60.108 55.000 0.00 0.00 36.03 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 78 4.686091 GGAGCTTAAATGTTTTGAGGTTGC 59.314 41.667 0.00 0.00 0.00 4.17
73 79 5.275067 AGCTTAAATGTTTTGAGGTTGCA 57.725 34.783 0.00 0.00 0.00 4.08
118 124 8.958043 GTGTCTACAAATTTTGTTGAGAATGAC 58.042 33.333 21.38 15.91 43.92 3.06
212 224 6.369629 AGTCTCCCCCTATCTTATCATATCG 58.630 44.000 0.00 0.00 0.00 2.92
223 240 9.729023 CTATCTTATCATATCGGTCACAGATTC 57.271 37.037 0.00 0.00 0.00 2.52
226 243 2.296190 TCATATCGGTCACAGATTCGGG 59.704 50.000 0.00 0.00 0.00 5.14
238 255 1.017387 GATTCGGGTCAGATTGTGCC 58.983 55.000 0.00 0.00 0.00 5.01
254 271 0.599728 TGCCGCCAAAAATCTGTTGC 60.600 50.000 0.00 0.00 0.00 4.17
291 308 2.564062 AGATTCAGGAACGGTTTCGGTA 59.436 45.455 0.00 0.00 41.39 4.02
292 309 2.443887 TTCAGGAACGGTTTCGGTAG 57.556 50.000 0.00 0.00 41.39 3.18
298 315 1.270550 GAACGGTTTCGGTAGGAGACA 59.729 52.381 0.00 0.00 41.39 3.41
328 345 1.039856 GGTGGCAAAGCTTTCCTCAA 58.960 50.000 20.96 3.36 0.00 3.02
336 353 2.617274 GCTTTCCTCAAGGCGCGTT 61.617 57.895 10.00 10.00 32.37 4.84
350 367 1.765161 CGCGTTGTCGATGGATGCAT 61.765 55.000 0.00 0.00 39.71 3.96
354 371 2.554142 GTTGTCGATGGATGCATGAGA 58.446 47.619 2.46 0.81 0.00 3.27
366 383 6.475504 TGGATGCATGAGAAAGAAGACTTTA 58.524 36.000 2.46 0.00 44.97 1.85
420 437 3.482156 AGACTAGGTACGCCTATTCGA 57.518 47.619 0.00 0.00 46.01 3.71
422 439 4.396522 AGACTAGGTACGCCTATTCGATT 58.603 43.478 0.00 0.00 46.01 3.34
452 469 8.125448 GGCGTACCTAGTAGGATAATTAATACG 58.875 40.741 23.50 21.11 37.67 3.06
464 481 6.537660 GGATAATTAATACGTATCACCTGGCC 59.462 42.308 8.86 0.00 0.00 5.36
488 505 4.808558 TGACAAATAGCACTTCCATTTGC 58.191 39.130 6.26 0.00 41.31 3.68
497 514 1.615392 ACTTCCATTTGCTTGCACTCC 59.385 47.619 0.00 0.00 0.00 3.85
521 539 3.635331 GTGCTGGCATGCTGTTTATATG 58.365 45.455 18.92 0.00 0.00 1.78
524 542 1.962807 TGGCATGCTGTTTATATGGCC 59.037 47.619 18.92 0.00 44.09 5.36
526 544 1.879380 GCATGCTGTTTATATGGCCGA 59.121 47.619 11.37 0.00 0.00 5.54
531 549 4.397420 TGCTGTTTATATGGCCGATCATT 58.603 39.130 0.00 0.00 0.00 2.57
537 555 0.110295 TATGGCCGATCATTGTGGGG 59.890 55.000 0.00 0.00 0.00 4.96
559 577 7.287005 TGGGGAGTAACTTATACTAGTGTCATG 59.713 40.741 5.39 0.00 0.00 3.07
560 578 7.287235 GGGGAGTAACTTATACTAGTGTCATGT 59.713 40.741 5.39 0.00 0.00 3.21
754 773 5.686159 ATTAGAGTGCGCTACGTTACTAT 57.314 39.130 9.73 1.87 29.96 2.12
755 774 3.605743 AGAGTGCGCTACGTTACTATC 57.394 47.619 9.73 0.00 29.96 2.08
766 785 7.000773 CGCTACGTTACTATCTAAGTTACTCG 58.999 42.308 0.00 0.00 39.80 4.18
767 786 7.287229 GCTACGTTACTATCTAAGTTACTCGG 58.713 42.308 0.00 0.00 39.80 4.63
768 787 7.042389 GCTACGTTACTATCTAAGTTACTCGGT 60.042 40.741 0.00 0.00 39.80 4.69
773 792 9.319143 GTTACTATCTAAGTTACTCGGTCACTA 57.681 37.037 0.00 0.00 39.80 2.74
777 796 9.221933 CTATCTAAGTTACTCGGTCACTATGAT 57.778 37.037 0.00 0.00 0.00 2.45
816 838 7.919621 ACGCATACCAGTAGTCTTACTATTTTC 59.080 37.037 0.00 0.00 38.05 2.29
841 865 2.517650 GGCAGTACATCTAGCTGACC 57.482 55.000 0.00 0.00 32.38 4.02
914 1893 4.988598 ACCCGCGGCTGACAAGTG 62.989 66.667 22.85 4.97 0.00 3.16
1525 2549 0.322906 CCTGCTTTCCTGTTCTCCCC 60.323 60.000 0.00 0.00 0.00 4.81
1550 2574 0.108992 ACACAGCATACACGTACGGG 60.109 55.000 17.69 17.69 0.00 5.28
1830 2902 7.402811 TTTCAATCGGATGTATATTGACGTC 57.597 36.000 9.11 9.11 38.87 4.34
1854 2934 4.891627 TGTGTTTCTTCGCTCATTTCAA 57.108 36.364 0.00 0.00 0.00 2.69
1905 2985 7.945033 TCAAAACATCTTTTATTGCTGAACC 57.055 32.000 0.00 0.00 0.00 3.62
1910 2990 3.343617 TCTTTTATTGCTGAACCGAGGG 58.656 45.455 0.00 0.00 0.00 4.30
1945 3025 7.979444 AACATCTTTTATTTCTGAACGGAGA 57.021 32.000 0.00 0.00 0.00 3.71
2034 3114 4.069304 TGAATTTCGAATTCGGGACAGTT 58.931 39.130 26.47 13.15 40.29 3.16
2049 3129 5.473039 GGGACAGTTGATTTTGAATGAAGG 58.527 41.667 0.00 0.00 0.00 3.46
2412 3493 0.174845 TAGCGTCCGTTGGATCTTGG 59.825 55.000 0.00 0.00 32.73 3.61
2422 3503 3.677700 CGTTGGATCTTGGTCGAATGGTA 60.678 47.826 0.00 0.00 0.00 3.25
2427 3508 5.780282 TGGATCTTGGTCGAATGGTAGATAT 59.220 40.000 0.00 0.00 0.00 1.63
2442 3523 9.567702 AATGGTAGATATAGGAGAAGGCTAATT 57.432 33.333 0.00 0.00 0.00 1.40
2466 3547 6.483687 TGACTAAGCGTTTTCTTCTTTTCAC 58.516 36.000 0.00 0.00 0.00 3.18
2551 3633 1.201647 TGGAGCTTACTAGTGACGCAC 59.798 52.381 5.39 3.93 34.10 5.34
2570 3652 2.418976 CACAAGCACTCCATCACAGATG 59.581 50.000 0.07 0.07 0.00 2.90
2576 3658 2.026915 CACTCCATCACAGATGGGTTGA 60.027 50.000 22.12 5.76 39.60 3.18
2585 3667 4.071423 CACAGATGGGTTGAACATACACA 58.929 43.478 0.00 0.00 32.65 3.72
2702 3784 1.515954 ACGATTGACCTGTAGCCGG 59.484 57.895 0.00 0.00 0.00 6.13
2703 3785 1.255667 ACGATTGACCTGTAGCCGGT 61.256 55.000 1.90 0.00 37.50 5.28
2723 3805 3.335579 GTCCCTATCGATTATTGGCACC 58.664 50.000 1.71 0.00 0.00 5.01
2744 3826 0.592637 ACACATGCACGTTGATGGTG 59.407 50.000 8.13 5.76 38.42 4.17
2745 3827 0.873721 CACATGCACGTTGATGGTGA 59.126 50.000 8.13 0.00 37.60 4.02
2746 3828 1.469703 CACATGCACGTTGATGGTGAT 59.530 47.619 8.13 0.00 37.60 3.06
2747 3829 1.469703 ACATGCACGTTGATGGTGATG 59.530 47.619 8.13 0.73 37.60 3.07
2748 3830 1.469703 CATGCACGTTGATGGTGATGT 59.530 47.619 0.00 0.00 37.60 3.06
2749 3831 0.873721 TGCACGTTGATGGTGATGTG 59.126 50.000 0.00 0.00 37.60 3.21
2750 3832 0.168788 GCACGTTGATGGTGATGTGG 59.831 55.000 0.00 0.00 37.60 4.17
2751 3833 1.807139 CACGTTGATGGTGATGTGGA 58.193 50.000 0.00 0.00 37.60 4.02
2752 3834 1.733912 CACGTTGATGGTGATGTGGAG 59.266 52.381 0.00 0.00 37.60 3.86
2753 3835 0.729116 CGTTGATGGTGATGTGGAGC 59.271 55.000 0.00 0.00 0.00 4.70
2754 3836 1.676916 CGTTGATGGTGATGTGGAGCT 60.677 52.381 0.00 0.00 0.00 4.09
2755 3837 2.440409 GTTGATGGTGATGTGGAGCTT 58.560 47.619 0.00 0.00 0.00 3.74
2756 3838 3.609853 GTTGATGGTGATGTGGAGCTTA 58.390 45.455 0.00 0.00 0.00 3.09
2757 3839 3.266510 TGATGGTGATGTGGAGCTTAC 57.733 47.619 0.00 0.00 0.00 2.34
2758 3840 2.840038 TGATGGTGATGTGGAGCTTACT 59.160 45.455 0.00 0.00 0.00 2.24
2759 3841 4.030216 TGATGGTGATGTGGAGCTTACTA 58.970 43.478 0.00 0.00 0.00 1.82
2760 3842 4.100035 TGATGGTGATGTGGAGCTTACTAG 59.900 45.833 0.00 0.00 0.00 2.57
2761 3843 3.441101 TGGTGATGTGGAGCTTACTAGT 58.559 45.455 0.00 0.00 0.00 2.57
2762 3844 3.195610 TGGTGATGTGGAGCTTACTAGTG 59.804 47.826 5.39 0.00 0.00 2.74
2763 3845 3.447586 GGTGATGTGGAGCTTACTAGTGA 59.552 47.826 5.39 0.00 0.00 3.41
2764 3846 4.425520 GTGATGTGGAGCTTACTAGTGAC 58.574 47.826 5.39 0.00 0.00 3.67
2765 3847 3.128764 TGATGTGGAGCTTACTAGTGACG 59.871 47.826 5.39 0.00 0.00 4.35
2766 3848 1.201647 TGTGGAGCTTACTAGTGACGC 59.798 52.381 5.39 5.23 0.00 5.19
2767 3849 1.201647 GTGGAGCTTACTAGTGACGCA 59.798 52.381 5.39 0.00 0.00 5.24
2768 3850 1.201647 TGGAGCTTACTAGTGACGCAC 59.798 52.381 5.39 3.93 34.10 5.34
2769 3851 1.201647 GGAGCTTACTAGTGACGCACA 59.798 52.381 5.39 0.00 36.74 4.57
2770 3852 2.352421 GGAGCTTACTAGTGACGCACAA 60.352 50.000 5.39 0.00 36.74 3.33
2771 3853 2.917971 GAGCTTACTAGTGACGCACAAG 59.082 50.000 5.39 0.05 36.74 3.16
2772 3854 1.390463 GCTTACTAGTGACGCACAAGC 59.610 52.381 5.39 7.08 36.74 4.01
2773 3855 2.672714 CTTACTAGTGACGCACAAGCA 58.327 47.619 5.39 0.00 42.27 3.91
2774 3856 2.060326 TACTAGTGACGCACAAGCAC 57.940 50.000 5.39 0.00 42.27 4.40
2775 3857 0.389391 ACTAGTGACGCACAAGCACT 59.611 50.000 11.58 0.00 44.38 4.40
2776 3858 1.202533 ACTAGTGACGCACAAGCACTT 60.203 47.619 11.58 0.00 42.40 3.16
2777 3859 1.457303 CTAGTGACGCACAAGCACTTC 59.543 52.381 11.58 0.00 42.40 3.01
2778 3860 0.461870 AGTGACGCACAAGCACTTCA 60.462 50.000 11.58 0.00 39.69 3.02
2779 3861 0.588252 GTGACGCACAAGCACTTCAT 59.412 50.000 5.30 0.00 42.27 2.57
2780 3862 0.867746 TGACGCACAAGCACTTCATC 59.132 50.000 0.00 0.00 42.27 2.92
2781 3863 0.867746 GACGCACAAGCACTTCATCA 59.132 50.000 0.00 0.00 42.27 3.07
2782 3864 0.588252 ACGCACAAGCACTTCATCAC 59.412 50.000 0.00 0.00 42.27 3.06
2783 3865 0.587768 CGCACAAGCACTTCATCACA 59.412 50.000 0.00 0.00 42.27 3.58
2784 3866 1.399343 CGCACAAGCACTTCATCACAG 60.399 52.381 0.00 0.00 42.27 3.66
2785 3867 1.875514 GCACAAGCACTTCATCACAGA 59.124 47.619 0.00 0.00 41.58 3.41
2786 3868 2.486982 GCACAAGCACTTCATCACAGAT 59.513 45.455 0.00 0.00 41.58 2.90
2787 3869 3.669824 GCACAAGCACTTCATCACAGATG 60.670 47.826 0.62 0.62 41.58 2.90
2788 3870 3.079578 ACAAGCACTTCATCACAGATGG 58.920 45.455 7.11 0.00 0.00 3.51
2789 3871 2.414994 AGCACTTCATCACAGATGGG 57.585 50.000 7.11 3.95 0.00 4.00
2790 3872 1.632409 AGCACTTCATCACAGATGGGT 59.368 47.619 7.11 4.49 0.00 4.51
2791 3873 2.040813 AGCACTTCATCACAGATGGGTT 59.959 45.455 7.11 0.00 0.00 4.11
2792 3874 2.163010 GCACTTCATCACAGATGGGTTG 59.837 50.000 7.11 3.59 0.00 3.77
2793 3875 2.751259 CACTTCATCACAGATGGGTTGG 59.249 50.000 7.11 0.00 0.00 3.77
2794 3876 2.644299 ACTTCATCACAGATGGGTTGGA 59.356 45.455 7.11 0.00 0.00 3.53
2795 3877 2.787473 TCATCACAGATGGGTTGGAC 57.213 50.000 7.11 0.00 0.00 4.02
2796 3878 1.984424 TCATCACAGATGGGTTGGACA 59.016 47.619 7.11 0.00 0.00 4.02
2797 3879 2.577563 TCATCACAGATGGGTTGGACAT 59.422 45.455 7.11 0.00 0.00 3.06
2798 3880 3.779738 TCATCACAGATGGGTTGGACATA 59.220 43.478 7.11 0.00 0.00 2.29
2799 3881 3.627395 TCACAGATGGGTTGGACATAC 57.373 47.619 0.00 0.00 0.00 2.39
2800 3882 2.909662 TCACAGATGGGTTGGACATACA 59.090 45.455 0.00 0.00 0.00 2.29
2801 3883 3.009723 CACAGATGGGTTGGACATACAC 58.990 50.000 0.00 0.00 0.00 2.90
2802 3884 2.642311 ACAGATGGGTTGGACATACACA 59.358 45.455 0.00 0.00 32.65 3.72
2803 3885 3.009723 CAGATGGGTTGGACATACACAC 58.990 50.000 0.00 0.00 30.50 3.82
2804 3886 2.006888 GATGGGTTGGACATACACACG 58.993 52.381 0.00 0.00 30.50 4.49
2805 3887 1.049402 TGGGTTGGACATACACACGA 58.951 50.000 0.00 0.00 0.00 4.35
2806 3888 1.626321 TGGGTTGGACATACACACGAT 59.374 47.619 0.00 0.00 0.00 3.73
2807 3889 2.039216 TGGGTTGGACATACACACGATT 59.961 45.455 0.00 0.00 0.00 3.34
2808 3890 2.418628 GGGTTGGACATACACACGATTG 59.581 50.000 0.00 0.00 0.00 2.67
2809 3891 3.331150 GGTTGGACATACACACGATTGA 58.669 45.455 0.00 0.00 0.00 2.57
2810 3892 3.124636 GGTTGGACATACACACGATTGAC 59.875 47.826 0.00 0.00 0.00 3.18
2811 3893 3.669251 TGGACATACACACGATTGACA 57.331 42.857 0.00 0.00 0.00 3.58
2812 3894 4.200838 TGGACATACACACGATTGACAT 57.799 40.909 0.00 0.00 0.00 3.06
2813 3895 3.932089 TGGACATACACACGATTGACATG 59.068 43.478 0.00 0.00 0.00 3.21
2814 3896 3.932710 GGACATACACACGATTGACATGT 59.067 43.478 0.00 0.00 32.22 3.21
2815 3897 5.106442 GGACATACACACGATTGACATGTA 58.894 41.667 0.00 0.00 30.77 2.29
2816 3898 5.232202 GGACATACACACGATTGACATGTAG 59.768 44.000 0.00 0.00 30.77 2.74
2817 3899 4.566759 ACATACACACGATTGACATGTAGC 59.433 41.667 0.00 0.00 29.65 3.58
2818 3900 2.346803 ACACACGATTGACATGTAGCC 58.653 47.619 0.00 0.00 0.00 3.93
2819 3901 1.324435 CACACGATTGACATGTAGCCG 59.676 52.381 0.00 3.06 0.00 5.52
2820 3902 0.930310 CACGATTGACATGTAGCCGG 59.070 55.000 0.00 0.00 0.00 6.13
2821 3903 0.535335 ACGATTGACATGTAGCCGGT 59.465 50.000 1.90 0.00 0.00 5.28
2822 3904 1.209128 CGATTGACATGTAGCCGGTC 58.791 55.000 1.90 0.00 0.00 4.79
2823 3905 1.583054 GATTGACATGTAGCCGGTCC 58.417 55.000 1.90 0.00 0.00 4.46
2824 3906 0.180406 ATTGACATGTAGCCGGTCCC 59.820 55.000 1.90 0.00 0.00 4.46
2825 3907 0.907704 TTGACATGTAGCCGGTCCCT 60.908 55.000 1.90 0.00 0.00 4.20
2826 3908 0.032912 TGACATGTAGCCGGTCCCTA 60.033 55.000 1.90 0.00 0.00 3.53
2827 3909 1.339097 GACATGTAGCCGGTCCCTAT 58.661 55.000 1.90 0.00 0.00 2.57
2828 3910 1.272769 GACATGTAGCCGGTCCCTATC 59.727 57.143 1.90 0.00 0.00 2.08
2829 3911 0.243907 CATGTAGCCGGTCCCTATCG 59.756 60.000 1.90 0.00 0.00 2.92
2830 3912 0.111832 ATGTAGCCGGTCCCTATCGA 59.888 55.000 1.90 0.00 0.00 3.59
2831 3913 0.111832 TGTAGCCGGTCCCTATCGAT 59.888 55.000 1.90 2.16 0.00 3.59
2832 3914 1.254954 GTAGCCGGTCCCTATCGATT 58.745 55.000 1.71 0.00 0.00 3.34
2833 3915 2.224843 TGTAGCCGGTCCCTATCGATTA 60.225 50.000 1.71 0.00 0.00 1.75
2834 3916 2.233305 AGCCGGTCCCTATCGATTAT 57.767 50.000 1.71 0.00 0.00 1.28
2835 3917 2.537143 AGCCGGTCCCTATCGATTATT 58.463 47.619 1.71 0.00 0.00 1.40
2836 3918 2.233922 AGCCGGTCCCTATCGATTATTG 59.766 50.000 1.71 0.00 0.00 1.90
2837 3919 2.677037 GCCGGTCCCTATCGATTATTGG 60.677 54.545 1.71 1.34 0.00 3.16
2838 3920 2.618053 CGGTCCCTATCGATTATTGGC 58.382 52.381 1.71 0.00 0.00 4.52
2839 3921 2.028476 CGGTCCCTATCGATTATTGGCA 60.028 50.000 1.71 0.00 0.00 4.92
2840 3922 3.335579 GGTCCCTATCGATTATTGGCAC 58.664 50.000 1.71 0.00 0.00 5.01
2841 3923 3.335579 GTCCCTATCGATTATTGGCACC 58.664 50.000 1.71 0.00 0.00 5.01
2842 3924 2.028476 TCCCTATCGATTATTGGCACCG 60.028 50.000 1.71 0.00 0.00 4.94
2843 3925 2.028476 CCCTATCGATTATTGGCACCGA 60.028 50.000 1.71 0.00 0.00 4.69
2844 3926 2.993899 CCTATCGATTATTGGCACCGAC 59.006 50.000 1.71 0.00 31.85 4.79
2845 3927 1.497991 ATCGATTATTGGCACCGACG 58.502 50.000 0.00 0.00 31.85 5.12
2846 3928 1.149361 TCGATTATTGGCACCGACGC 61.149 55.000 0.00 0.00 0.00 5.19
2847 3929 1.275657 GATTATTGGCACCGACGCG 59.724 57.895 3.53 3.53 0.00 6.01
2848 3930 1.426041 GATTATTGGCACCGACGCGT 61.426 55.000 13.85 13.85 0.00 6.01
2849 3931 1.701545 ATTATTGGCACCGACGCGTG 61.702 55.000 20.70 5.54 36.80 5.34
2855 3937 3.711842 CACCGACGCGTGCATGTT 61.712 61.111 20.70 0.00 0.00 2.71
2856 3938 3.711842 ACCGACGCGTGCATGTTG 61.712 61.111 20.70 3.27 0.00 3.33
2857 3939 3.410516 CCGACGCGTGCATGTTGA 61.411 61.111 20.70 0.00 0.00 3.18
2858 3940 2.739704 CCGACGCGTGCATGTTGAT 61.740 57.895 20.70 0.00 0.00 2.57
2859 3941 1.578367 CGACGCGTGCATGTTGATG 60.578 57.895 20.70 0.00 0.00 3.07
2860 3942 1.226101 GACGCGTGCATGTTGATGG 60.226 57.895 20.70 0.00 0.00 3.51
2861 3943 1.911293 GACGCGTGCATGTTGATGGT 61.911 55.000 20.70 0.00 0.00 3.55
2862 3944 1.512522 CGCGTGCATGTTGATGGTG 60.513 57.895 7.93 0.00 0.00 4.17
3029 5302 9.377312 TGAAAACAAATTCAAAAGGTTCTAAGG 57.623 29.630 0.00 0.00 36.42 2.69
3104 5386 5.996219 TGAAATGACAATCGTGAAAATCGT 58.004 33.333 0.00 0.00 0.00 3.73
3105 5387 5.850653 TGAAATGACAATCGTGAAAATCGTG 59.149 36.000 0.00 0.00 0.00 4.35
3162 5444 5.052172 CGAAAATAGCATTTTTGGAGCATCG 60.052 40.000 11.05 0.00 34.37 3.84
3165 5447 3.665745 AGCATTTTTGGAGCATCGTTT 57.334 38.095 0.00 0.00 34.37 3.60
3166 5448 3.578688 AGCATTTTTGGAGCATCGTTTC 58.421 40.909 0.00 0.00 34.37 2.78
3198 5480 5.180117 CCATGACTTCCACGAATATCATTCC 59.820 44.000 0.00 0.00 30.19 3.01
3310 5592 9.698309 CTCCATTCCATAAAGTAGTGTGTATAG 57.302 37.037 0.00 0.00 0.00 1.31
3454 5736 3.921119 TGTTTGGCACTTTAGATGCAG 57.079 42.857 0.00 0.00 45.27 4.41
3462 5744 7.031226 TGGCACTTTAGATGCAGATATTTTC 57.969 36.000 0.00 0.00 45.27 2.29
3478 5760 8.624776 CAGATATTTTCCTCCATAAACTTGGTC 58.375 37.037 0.00 0.00 38.01 4.02
3612 5894 4.822026 AGCTCAGAATTACCACACACTAC 58.178 43.478 0.00 0.00 0.00 2.73
3815 6121 6.128309 TGTTCACTACACATCCATGAATTTCG 60.128 38.462 0.00 0.00 32.30 3.46
3846 6152 6.365050 GGAAAAATGTTATTTGCAAGCTGTG 58.635 36.000 0.00 0.00 0.00 3.66
3994 6554 4.036380 TGTGTGTGTGTGTGTGTTTACAAA 59.964 37.500 0.00 0.00 38.82 2.83
4289 6875 2.501316 GCCTAGCCCCATTTTGTGATTT 59.499 45.455 0.00 0.00 0.00 2.17
4290 6876 3.055167 GCCTAGCCCCATTTTGTGATTTT 60.055 43.478 0.00 0.00 0.00 1.82
4348 6935 2.957402 AAAGAAGGCCAGATGTGTCA 57.043 45.000 5.01 0.00 0.00 3.58
4466 7060 2.037251 AGCACCAACAGTACTACCTGTG 59.963 50.000 0.00 2.85 44.74 3.66
5115 8203 9.806448 ATATATAGTGAACATTAATGGGCAACA 57.194 29.630 19.37 8.76 39.74 3.33
5147 8236 3.623906 AGAGACCTGTACGCTACTGTA 57.376 47.619 0.00 0.00 0.00 2.74
5202 8295 6.469782 TCAAATCCTCCTCAAATATTTGGC 57.530 37.500 24.40 0.00 37.85 4.52
5246 8340 5.363517 CGTTCTTTAAACGACACACATCTC 58.636 41.667 4.39 0.00 45.64 2.75
5278 8372 5.941555 AGCTAGCTTTAGTACATTCCTGT 57.058 39.130 12.68 0.00 39.49 4.00
5536 8636 1.449601 CGAGTATGCGGCCAACCTT 60.450 57.895 2.24 0.00 0.00 3.50
5559 8659 0.110238 CGAACCAATTGCACCACTCG 60.110 55.000 0.00 0.00 0.00 4.18
5560 8660 1.234821 GAACCAATTGCACCACTCGA 58.765 50.000 0.00 0.00 0.00 4.04
5852 8952 3.423539 ACAACTAGTGGCATGTCATGT 57.576 42.857 14.26 0.00 0.00 3.21
6054 9171 4.336889 TCACGAAGAATCACTCACCTTT 57.663 40.909 0.00 0.00 0.00 3.11
6066 9183 5.649557 TCACTCACCTTTGTCATTTTTGTG 58.350 37.500 0.00 0.00 0.00 3.33
6097 9214 2.745281 TCGCTTGGCATGTAAGGTTTAC 59.255 45.455 11.94 0.00 0.00 2.01
6098 9215 2.475519 CGCTTGGCATGTAAGGTTTACG 60.476 50.000 11.94 4.94 0.00 3.18
6236 9353 4.435436 CCCGTGACGCTAGCTGCA 62.435 66.667 13.93 7.73 43.06 4.41
6239 9356 2.772189 GTGACGCTAGCTGCAACG 59.228 61.111 13.93 4.86 43.06 4.10
6262 9379 4.547367 GCCACCTCCGCCGCTTAT 62.547 66.667 0.00 0.00 0.00 1.73
6284 9403 3.775654 GCCTCCCGACTCCACCTG 61.776 72.222 0.00 0.00 0.00 4.00
6296 9415 2.273449 CACCTGTCCATGGCCTCC 59.727 66.667 6.96 0.00 0.00 4.30
6321 9440 4.675303 CCCTCCACCCTCACCCCA 62.675 72.222 0.00 0.00 0.00 4.96
6322 9441 3.330720 CCTCCACCCTCACCCCAC 61.331 72.222 0.00 0.00 0.00 4.61
6323 9442 2.203998 CTCCACCCTCACCCCACT 60.204 66.667 0.00 0.00 0.00 4.00
6392 9517 1.421480 CCTGCAGATCCAGATCCAGA 58.579 55.000 17.39 0.00 38.58 3.86
6449 9574 2.035155 TCTCTCGCGTTCCCAGGA 59.965 61.111 5.77 0.00 0.00 3.86
6455 9580 1.079127 CGCGTTCCCAGGAATGTCT 60.079 57.895 17.76 0.00 41.68 3.41
6462 9587 2.877975 CCAGGAATGTCTTGGGCTG 58.122 57.895 0.00 0.00 39.69 4.85
6478 9603 2.685017 TGCTCCCTCGGCTCATGT 60.685 61.111 0.00 0.00 0.00 3.21
6480 9605 0.975556 TGCTCCCTCGGCTCATGTTA 60.976 55.000 0.00 0.00 0.00 2.41
6496 9621 2.424793 TGTTACCACCCCCTCTTTCTT 58.575 47.619 0.00 0.00 0.00 2.52
6505 9630 0.254462 CCCTCTTTCTTGGCTCCCTC 59.746 60.000 0.00 0.00 0.00 4.30
6515 9640 0.914644 TGGCTCCCTCTGGATTTCAG 59.085 55.000 0.00 0.00 40.80 3.02
6519 9644 1.228510 CCCTCTGGATTTCAGGCCC 59.771 63.158 0.00 0.00 43.53 5.80
6543 9668 2.279502 TAGTGGCCGATGTCTCGCAC 62.280 60.000 0.00 0.00 43.66 5.34
6551 9676 2.267227 GATGTCTCGCACGCGTCAAC 62.267 60.000 9.86 0.00 40.74 3.18
6633 9758 2.960688 GCCCCGCAAGAAGGAGTCT 61.961 63.158 0.00 0.00 43.02 3.24
6636 9761 0.539051 CCCGCAAGAAGGAGTCTGAT 59.461 55.000 0.00 0.00 36.40 2.90
6655 9780 1.153568 CGCTCCCTCGCATTCAAGA 60.154 57.895 0.00 0.00 0.00 3.02
6708 11561 2.637383 GGAGGACCACTTCGTCGCT 61.637 63.158 0.00 0.00 39.63 4.93
6738 11591 3.644606 CCTGTCACCTGCCTGGCT 61.645 66.667 21.03 0.00 40.22 4.75
6771 11624 4.950974 CATCGCGAGCGCCAATGC 62.951 66.667 16.66 1.60 39.59 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 65 2.757314 TGATGTGTGCAACCTCAAAACA 59.243 40.909 0.00 0.00 31.33 2.83
185 197 3.904339 TGATAAGATAGGGGGAGACTTGC 59.096 47.826 0.00 0.00 0.00 4.01
212 224 0.895530 TCTGACCCGAATCTGTGACC 59.104 55.000 0.00 0.00 0.00 4.02
223 240 3.499737 GCGGCACAATCTGACCCG 61.500 66.667 0.00 0.00 37.50 5.28
226 243 0.313672 TTTTGGCGGCACAATCTGAC 59.686 50.000 12.92 0.00 0.00 3.51
238 255 2.138596 ACAGCAACAGATTTTTGGCG 57.861 45.000 0.00 0.00 0.00 5.69
291 308 0.322997 CCACTCGGTCTCTGTCTCCT 60.323 60.000 0.00 0.00 0.00 3.69
292 309 0.609681 ACCACTCGGTCTCTGTCTCC 60.610 60.000 0.00 0.00 44.71 3.71
298 315 1.407656 TTTGCCACCACTCGGTCTCT 61.408 55.000 0.00 0.00 44.71 3.10
328 345 3.371097 ATCCATCGACAACGCGCCT 62.371 57.895 5.73 0.00 39.58 5.52
336 353 2.985957 TTCTCATGCATCCATCGACA 57.014 45.000 0.00 0.00 0.00 4.35
350 367 9.559732 TTGAATGTGATAAAGTCTTCTTTCTCA 57.440 29.630 5.22 5.22 41.28 3.27
382 399 8.033626 ACCTAGTCTTCCTGTAAAATACTTTCG 58.966 37.037 0.00 0.00 0.00 3.46
420 437 4.443978 TCCTACTAGGTACGCCTACAAT 57.556 45.455 1.83 0.00 44.90 2.71
422 439 5.567037 TTATCCTACTAGGTACGCCTACA 57.433 43.478 1.83 0.00 44.90 2.74
436 453 9.798994 CCAGGTGATACGTATTAATTATCCTAC 57.201 37.037 9.92 0.00 0.00 3.18
440 457 7.101054 TGGCCAGGTGATACGTATTAATTATC 58.899 38.462 9.92 0.00 0.00 1.75
441 458 7.011499 TGGCCAGGTGATACGTATTAATTAT 57.989 36.000 9.92 0.00 0.00 1.28
442 459 6.422344 TGGCCAGGTGATACGTATTAATTA 57.578 37.500 9.92 0.00 0.00 1.40
443 460 5.298989 TGGCCAGGTGATACGTATTAATT 57.701 39.130 9.92 0.00 0.00 1.40
444 461 4.967084 TGGCCAGGTGATACGTATTAAT 57.033 40.909 9.92 0.00 0.00 1.40
445 462 4.345547 TCATGGCCAGGTGATACGTATTAA 59.654 41.667 18.43 0.00 0.00 1.40
452 469 2.418368 TTGTCATGGCCAGGTGATAC 57.582 50.000 18.43 8.70 0.00 2.24
464 481 6.880822 CAAATGGAAGTGCTATTTGTCATG 57.119 37.500 11.00 0.00 45.24 3.07
497 514 2.410638 AAACAGCATGCCAGCACGTG 62.411 55.000 15.66 12.28 42.53 4.49
521 539 1.526917 CTCCCCACAATGATCGGCC 60.527 63.158 0.00 0.00 0.00 6.13
524 542 3.543680 AGTTACTCCCCACAATGATCG 57.456 47.619 0.00 0.00 0.00 3.69
526 544 7.691993 AGTATAAGTTACTCCCCACAATGAT 57.308 36.000 0.00 0.00 0.00 2.45
531 549 6.496743 ACACTAGTATAAGTTACTCCCCACA 58.503 40.000 0.00 0.00 0.00 4.17
565 583 9.654663 ATGAAGGTAGTAACTTAGACAAATGTC 57.345 33.333 0.00 5.40 45.08 3.06
571 589 9.964354 TGTACTATGAAGGTAGTAACTTAGACA 57.036 33.333 0.00 0.00 38.51 3.41
640 658 9.607988 TTGTTTAAGACAAGATGAGTCTACAAA 57.392 29.630 7.36 4.32 45.11 2.83
695 713 9.826574 ATGCGGTAAGTAGTTAATGAGAAATAA 57.173 29.630 0.00 0.00 0.00 1.40
741 760 7.000773 CGAGTAACTTAGATAGTAACGTAGCG 58.999 42.308 0.00 0.00 35.54 4.26
742 761 7.042389 ACCGAGTAACTTAGATAGTAACGTAGC 60.042 40.741 0.00 0.00 35.54 3.58
754 773 7.876936 AATCATAGTGACCGAGTAACTTAGA 57.123 36.000 0.10 0.70 28.94 2.10
755 774 7.804129 GCTAATCATAGTGACCGAGTAACTTAG 59.196 40.741 0.10 0.00 28.94 2.18
766 785 5.246203 TGGTGATAGGCTAATCATAGTGACC 59.754 44.000 0.00 0.00 38.13 4.02
767 786 6.159988 GTGGTGATAGGCTAATCATAGTGAC 58.840 44.000 0.00 0.00 38.13 3.67
768 787 5.048013 CGTGGTGATAGGCTAATCATAGTGA 60.048 44.000 0.00 0.00 38.13 3.41
773 792 2.368548 TGCGTGGTGATAGGCTAATCAT 59.631 45.455 0.00 0.00 38.13 2.45
777 796 2.036733 GGTATGCGTGGTGATAGGCTAA 59.963 50.000 0.00 0.00 32.95 3.09
816 838 0.039978 CTAGATGTACTGCCCGCGAG 60.040 60.000 8.23 0.00 0.00 5.03
841 865 7.819644 TGGTCAGTTAATCAGTTCAATCATTG 58.180 34.615 0.00 0.00 0.00 2.82
914 1893 1.703438 CCGTGCAATGCTCTGCTCTC 61.703 60.000 6.82 2.91 43.07 3.20
1074 2060 4.408821 TACCCCTGCCGCAGCTTG 62.409 66.667 15.36 7.57 40.80 4.01
1525 2549 0.512518 CGTGTATGCTGTGTGTGTGG 59.487 55.000 0.00 0.00 0.00 4.17
1641 2711 0.179062 GCCTCCTGCTTGATCGACAT 60.179 55.000 0.00 0.00 36.87 3.06
1813 2883 5.518847 ACACAAAGACGTCAATATACATCCG 59.481 40.000 19.50 0.00 0.00 4.18
1830 2902 5.273170 TGAAATGAGCGAAGAAACACAAAG 58.727 37.500 0.00 0.00 0.00 2.77
1885 2965 5.106157 CCTCGGTTCAGCAATAAAAGATGTT 60.106 40.000 0.00 0.00 0.00 2.71
1895 2975 2.514458 AATTCCCTCGGTTCAGCAAT 57.486 45.000 0.00 0.00 0.00 3.56
1898 2978 3.541632 TGAATAATTCCCTCGGTTCAGC 58.458 45.455 0.00 0.00 0.00 4.26
1905 2985 8.986477 AAAAGATGTTTTGAATAATTCCCTCG 57.014 30.769 0.00 0.00 34.44 4.63
1945 3025 3.566322 CGGCTACTGATACTTAGTGCTCT 59.434 47.826 0.00 0.00 0.00 4.09
1983 3063 9.283768 TGACTGACATGTAGTGAAATTGTAATT 57.716 29.630 0.00 0.00 0.00 1.40
1990 3070 5.157940 AGCTGACTGACATGTAGTGAAAT 57.842 39.130 0.00 0.00 0.00 2.17
2034 3114 7.725397 TCCTTCTTCTTCCTTCATTCAAAATCA 59.275 33.333 0.00 0.00 0.00 2.57
2198 3278 1.451936 CCATCCCTTTAGGCTCCCG 59.548 63.158 0.00 0.00 34.51 5.14
2313 3394 2.531685 AACCCAGCCCTAGCCACA 60.532 61.111 0.00 0.00 41.25 4.17
2318 3399 0.918983 TTGATCCAACCCAGCCCTAG 59.081 55.000 0.00 0.00 0.00 3.02
2412 3493 6.404954 GCCTTCTCCTATATCTACCATTCGAC 60.405 46.154 0.00 0.00 0.00 4.20
2422 3503 9.830186 TTAGTCAATTAGCCTTCTCCTATATCT 57.170 33.333 0.00 0.00 0.00 1.98
2427 3508 5.221263 CGCTTAGTCAATTAGCCTTCTCCTA 60.221 44.000 0.00 0.00 0.00 2.94
2442 3523 6.483687 GTGAAAAGAAGAAAACGCTTAGTCA 58.516 36.000 0.00 0.00 0.00 3.41
2466 3547 2.230940 CGGCTACAGGTCAATCGCG 61.231 63.158 0.00 0.00 0.00 5.87
2551 3633 2.014857 CCATCTGTGATGGAGTGCTTG 58.985 52.381 18.79 0.00 41.64 4.01
2570 3652 3.749088 TCAATCGTGTGTATGTTCAACCC 59.251 43.478 0.00 0.00 0.00 4.11
2684 3766 1.255667 ACCGGCTACAGGTCAATCGT 61.256 55.000 0.00 0.00 37.44 3.73
2685 3767 1.515954 ACCGGCTACAGGTCAATCG 59.484 57.895 0.00 0.00 37.44 3.34
2691 3773 0.469518 GATAGGGACCGGCTACAGGT 60.470 60.000 0.00 0.00 46.16 4.00
2692 3774 1.524863 CGATAGGGACCGGCTACAGG 61.525 65.000 0.00 0.00 0.00 4.00
2693 3775 0.536687 TCGATAGGGACCGGCTACAG 60.537 60.000 0.00 0.00 0.00 2.74
2694 3776 0.111832 ATCGATAGGGACCGGCTACA 59.888 55.000 0.00 0.00 0.00 2.74
2695 3777 1.254954 AATCGATAGGGACCGGCTAC 58.745 55.000 0.00 0.00 0.00 3.58
2696 3778 2.885135 TAATCGATAGGGACCGGCTA 57.115 50.000 0.00 0.00 0.00 3.93
2697 3779 2.233305 ATAATCGATAGGGACCGGCT 57.767 50.000 0.00 0.00 0.00 5.52
2698 3780 2.618053 CAATAATCGATAGGGACCGGC 58.382 52.381 0.00 0.00 0.00 6.13
2699 3781 2.677037 GCCAATAATCGATAGGGACCGG 60.677 54.545 0.00 0.00 0.00 5.28
2700 3782 2.028476 TGCCAATAATCGATAGGGACCG 60.028 50.000 0.00 0.00 0.00 4.79
2701 3783 3.335579 GTGCCAATAATCGATAGGGACC 58.664 50.000 15.24 0.00 35.01 4.46
2702 3784 3.335579 GGTGCCAATAATCGATAGGGAC 58.664 50.000 16.86 16.86 39.62 4.46
2703 3785 2.028476 CGGTGCCAATAATCGATAGGGA 60.028 50.000 0.00 0.00 0.00 4.20
2704 3786 2.028476 TCGGTGCCAATAATCGATAGGG 60.028 50.000 0.00 0.00 0.00 3.53
2705 3787 2.993899 GTCGGTGCCAATAATCGATAGG 59.006 50.000 0.00 0.00 32.46 2.57
2723 3805 0.179217 CCATCAACGTGCATGTGTCG 60.179 55.000 13.39 1.57 0.00 4.35
2744 3826 3.696898 CGTCACTAGTAAGCTCCACATC 58.303 50.000 0.00 0.00 0.00 3.06
2745 3827 2.159226 GCGTCACTAGTAAGCTCCACAT 60.159 50.000 0.00 0.00 0.00 3.21
2746 3828 1.201647 GCGTCACTAGTAAGCTCCACA 59.798 52.381 0.00 0.00 0.00 4.17
2747 3829 1.201647 TGCGTCACTAGTAAGCTCCAC 59.798 52.381 14.65 0.00 0.00 4.02
2748 3830 1.201647 GTGCGTCACTAGTAAGCTCCA 59.798 52.381 14.65 0.00 0.00 3.86
2749 3831 1.201647 TGTGCGTCACTAGTAAGCTCC 59.798 52.381 14.65 8.08 35.11 4.70
2750 3832 2.631418 TGTGCGTCACTAGTAAGCTC 57.369 50.000 14.65 12.20 35.11 4.09
2751 3833 2.927014 GCTTGTGCGTCACTAGTAAGCT 60.927 50.000 14.30 0.00 38.90 3.74
2752 3834 1.390463 GCTTGTGCGTCACTAGTAAGC 59.610 52.381 17.20 15.05 38.90 3.09
2753 3835 2.408704 GTGCTTGTGCGTCACTAGTAAG 59.591 50.000 17.20 10.94 43.34 2.34
2754 3836 2.035449 AGTGCTTGTGCGTCACTAGTAA 59.965 45.455 17.20 8.18 43.34 2.24
2755 3837 1.611977 AGTGCTTGTGCGTCACTAGTA 59.388 47.619 17.20 12.70 43.34 1.82
2756 3838 0.389391 AGTGCTTGTGCGTCACTAGT 59.611 50.000 17.20 0.00 43.34 2.57
2757 3839 1.457303 GAAGTGCTTGTGCGTCACTAG 59.543 52.381 13.75 13.75 39.86 2.57
2758 3840 1.202475 TGAAGTGCTTGTGCGTCACTA 60.202 47.619 10.54 3.48 39.86 2.74
2759 3841 0.461870 TGAAGTGCTTGTGCGTCACT 60.462 50.000 10.54 0.00 42.28 3.41
2760 3842 0.588252 ATGAAGTGCTTGTGCGTCAC 59.412 50.000 3.44 3.44 43.34 3.67
2761 3843 0.867746 GATGAAGTGCTTGTGCGTCA 59.132 50.000 0.00 0.00 43.34 4.35
2762 3844 0.867746 TGATGAAGTGCTTGTGCGTC 59.132 50.000 0.00 0.00 43.34 5.19
2763 3845 0.588252 GTGATGAAGTGCTTGTGCGT 59.412 50.000 0.00 0.00 43.34 5.24
2764 3846 0.587768 TGTGATGAAGTGCTTGTGCG 59.412 50.000 0.00 0.00 43.34 5.34
2765 3847 1.875514 TCTGTGATGAAGTGCTTGTGC 59.124 47.619 0.00 0.00 40.20 4.57
2766 3848 3.119955 CCATCTGTGATGAAGTGCTTGTG 60.120 47.826 8.91 0.00 0.00 3.33
2767 3849 3.079578 CCATCTGTGATGAAGTGCTTGT 58.920 45.455 8.91 0.00 0.00 3.16
2768 3850 2.422479 CCCATCTGTGATGAAGTGCTTG 59.578 50.000 8.91 0.00 0.00 4.01
2769 3851 2.040813 ACCCATCTGTGATGAAGTGCTT 59.959 45.455 8.91 0.00 0.00 3.91
2770 3852 1.632409 ACCCATCTGTGATGAAGTGCT 59.368 47.619 8.91 0.00 0.00 4.40
2771 3853 2.119801 ACCCATCTGTGATGAAGTGC 57.880 50.000 8.91 0.00 0.00 4.40
2772 3854 2.751259 CCAACCCATCTGTGATGAAGTG 59.249 50.000 8.91 4.04 0.00 3.16
2773 3855 2.644299 TCCAACCCATCTGTGATGAAGT 59.356 45.455 8.91 3.87 0.00 3.01
2774 3856 3.012518 GTCCAACCCATCTGTGATGAAG 58.987 50.000 8.91 3.32 0.00 3.02
2775 3857 2.374839 TGTCCAACCCATCTGTGATGAA 59.625 45.455 8.91 0.00 0.00 2.57
2776 3858 1.984424 TGTCCAACCCATCTGTGATGA 59.016 47.619 8.91 0.00 0.00 2.92
2777 3859 2.495155 TGTCCAACCCATCTGTGATG 57.505 50.000 0.92 0.92 0.00 3.07
2778 3860 3.523157 TGTATGTCCAACCCATCTGTGAT 59.477 43.478 0.00 0.00 0.00 3.06
2779 3861 2.909662 TGTATGTCCAACCCATCTGTGA 59.090 45.455 0.00 0.00 0.00 3.58
2780 3862 3.009723 GTGTATGTCCAACCCATCTGTG 58.990 50.000 0.00 0.00 0.00 3.66
2781 3863 2.642311 TGTGTATGTCCAACCCATCTGT 59.358 45.455 0.00 0.00 0.00 3.41
2782 3864 3.009723 GTGTGTATGTCCAACCCATCTG 58.990 50.000 0.00 0.00 0.00 2.90
2783 3865 2.354704 CGTGTGTATGTCCAACCCATCT 60.355 50.000 0.00 0.00 0.00 2.90
2784 3866 2.006888 CGTGTGTATGTCCAACCCATC 58.993 52.381 0.00 0.00 0.00 3.51
2785 3867 1.626321 TCGTGTGTATGTCCAACCCAT 59.374 47.619 0.00 0.00 0.00 4.00
2786 3868 1.049402 TCGTGTGTATGTCCAACCCA 58.951 50.000 0.00 0.00 0.00 4.51
2787 3869 2.396590 ATCGTGTGTATGTCCAACCC 57.603 50.000 0.00 0.00 0.00 4.11
2788 3870 3.124636 GTCAATCGTGTGTATGTCCAACC 59.875 47.826 0.00 0.00 0.00 3.77
2789 3871 3.743911 TGTCAATCGTGTGTATGTCCAAC 59.256 43.478 0.00 0.00 0.00 3.77
2790 3872 3.996480 TGTCAATCGTGTGTATGTCCAA 58.004 40.909 0.00 0.00 0.00 3.53
2791 3873 3.669251 TGTCAATCGTGTGTATGTCCA 57.331 42.857 0.00 0.00 0.00 4.02
2792 3874 3.932710 ACATGTCAATCGTGTGTATGTCC 59.067 43.478 0.00 0.00 43.67 4.02
2793 3875 5.276395 GCTACATGTCAATCGTGTGTATGTC 60.276 44.000 0.00 3.19 44.78 3.06
2794 3876 4.566759 GCTACATGTCAATCGTGTGTATGT 59.433 41.667 0.00 0.00 44.78 2.29
2795 3877 4.025730 GGCTACATGTCAATCGTGTGTATG 60.026 45.833 0.00 0.00 44.78 2.39
2796 3878 4.119862 GGCTACATGTCAATCGTGTGTAT 58.880 43.478 0.00 0.00 44.78 2.29
2797 3879 3.517602 GGCTACATGTCAATCGTGTGTA 58.482 45.455 0.00 0.00 44.78 2.90
2798 3880 2.346803 GGCTACATGTCAATCGTGTGT 58.653 47.619 0.00 0.00 44.78 3.72
2799 3881 1.324435 CGGCTACATGTCAATCGTGTG 59.676 52.381 0.00 0.00 44.78 3.82
2800 3882 1.640428 CGGCTACATGTCAATCGTGT 58.360 50.000 0.00 0.00 46.50 4.49
2801 3883 0.930310 CCGGCTACATGTCAATCGTG 59.070 55.000 0.00 0.00 38.86 4.35
2802 3884 0.535335 ACCGGCTACATGTCAATCGT 59.465 50.000 0.00 0.00 0.00 3.73
2803 3885 1.209128 GACCGGCTACATGTCAATCG 58.791 55.000 0.00 2.67 0.00 3.34
2804 3886 1.583054 GGACCGGCTACATGTCAATC 58.417 55.000 0.00 0.00 0.00 2.67
2805 3887 0.180406 GGGACCGGCTACATGTCAAT 59.820 55.000 0.00 0.00 0.00 2.57
2806 3888 0.907704 AGGGACCGGCTACATGTCAA 60.908 55.000 0.00 0.00 0.00 3.18
2807 3889 0.032912 TAGGGACCGGCTACATGTCA 60.033 55.000 0.00 0.00 0.00 3.58
2808 3890 1.272769 GATAGGGACCGGCTACATGTC 59.727 57.143 0.00 0.00 0.00 3.06
2809 3891 1.339097 GATAGGGACCGGCTACATGT 58.661 55.000 0.00 2.69 0.00 3.21
2810 3892 0.243907 CGATAGGGACCGGCTACATG 59.756 60.000 0.00 0.00 0.00 3.21
2811 3893 0.111832 TCGATAGGGACCGGCTACAT 59.888 55.000 0.00 0.00 0.00 2.29
2812 3894 0.111832 ATCGATAGGGACCGGCTACA 59.888 55.000 0.00 0.00 0.00 2.74
2813 3895 1.254954 AATCGATAGGGACCGGCTAC 58.745 55.000 0.00 0.00 0.00 3.58
2814 3896 2.885135 TAATCGATAGGGACCGGCTA 57.115 50.000 0.00 0.00 0.00 3.93
2815 3897 2.233305 ATAATCGATAGGGACCGGCT 57.767 50.000 0.00 0.00 0.00 5.52
2816 3898 2.618053 CAATAATCGATAGGGACCGGC 58.382 52.381 0.00 0.00 0.00 6.13
2817 3899 2.677037 GCCAATAATCGATAGGGACCGG 60.677 54.545 0.00 0.00 0.00 5.28
2818 3900 2.028476 TGCCAATAATCGATAGGGACCG 60.028 50.000 0.00 0.00 0.00 4.79
2819 3901 3.335579 GTGCCAATAATCGATAGGGACC 58.664 50.000 15.24 0.00 35.01 4.46
2820 3902 3.335579 GGTGCCAATAATCGATAGGGAC 58.664 50.000 16.86 16.86 39.62 4.46
2821 3903 2.028476 CGGTGCCAATAATCGATAGGGA 60.028 50.000 0.00 0.00 0.00 4.20
2822 3904 2.028476 TCGGTGCCAATAATCGATAGGG 60.028 50.000 0.00 0.00 0.00 3.53
2823 3905 2.993899 GTCGGTGCCAATAATCGATAGG 59.006 50.000 0.00 0.00 32.46 2.57
2824 3906 2.661675 CGTCGGTGCCAATAATCGATAG 59.338 50.000 0.00 0.00 32.46 2.08
2825 3907 2.668250 CGTCGGTGCCAATAATCGATA 58.332 47.619 0.00 0.00 32.46 2.92
2826 3908 1.497991 CGTCGGTGCCAATAATCGAT 58.502 50.000 0.00 0.00 32.46 3.59
2827 3909 1.149361 GCGTCGGTGCCAATAATCGA 61.149 55.000 0.00 0.00 0.00 3.59
2828 3910 1.275657 GCGTCGGTGCCAATAATCG 59.724 57.895 0.00 0.00 0.00 3.34
2829 3911 1.275657 CGCGTCGGTGCCAATAATC 59.724 57.895 0.00 0.00 0.00 1.75
2830 3912 1.448893 ACGCGTCGGTGCCAATAAT 60.449 52.632 5.58 0.00 0.00 1.28
2831 3913 2.048033 ACGCGTCGGTGCCAATAA 60.048 55.556 5.58 0.00 0.00 1.40
2832 3914 2.811747 CACGCGTCGGTGCCAATA 60.812 61.111 9.86 0.00 0.00 1.90
2838 3920 3.711842 AACATGCACGCGTCGGTG 61.712 61.111 9.86 10.88 40.89 4.94
2839 3921 3.711842 CAACATGCACGCGTCGGT 61.712 61.111 9.86 1.68 0.00 4.69
2840 3922 2.739704 ATCAACATGCACGCGTCGG 61.740 57.895 9.86 0.00 0.00 4.79
2841 3923 1.578367 CATCAACATGCACGCGTCG 60.578 57.895 9.86 6.55 0.00 5.12
2842 3924 1.226101 CCATCAACATGCACGCGTC 60.226 57.895 9.86 5.12 0.00 5.19
2843 3925 1.965930 ACCATCAACATGCACGCGT 60.966 52.632 5.58 5.58 0.00 6.01
2844 3926 1.512522 CACCATCAACATGCACGCG 60.513 57.895 3.53 3.53 0.00 6.01
2845 3927 0.452987 ATCACCATCAACATGCACGC 59.547 50.000 0.00 0.00 0.00 5.34
2846 3928 1.469703 ACATCACCATCAACATGCACG 59.530 47.619 0.00 0.00 0.00 5.34
2847 3929 2.416296 CCACATCACCATCAACATGCAC 60.416 50.000 0.00 0.00 0.00 4.57
2848 3930 1.819903 CCACATCACCATCAACATGCA 59.180 47.619 0.00 0.00 0.00 3.96
2849 3931 2.093890 TCCACATCACCATCAACATGC 58.906 47.619 0.00 0.00 0.00 4.06
2850 3932 2.098607 GCTCCACATCACCATCAACATG 59.901 50.000 0.00 0.00 0.00 3.21
2851 3933 2.025605 AGCTCCACATCACCATCAACAT 60.026 45.455 0.00 0.00 0.00 2.71
2852 3934 1.352017 AGCTCCACATCACCATCAACA 59.648 47.619 0.00 0.00 0.00 3.33
2853 3935 2.119801 AGCTCCACATCACCATCAAC 57.880 50.000 0.00 0.00 0.00 3.18
2854 3936 2.885135 AAGCTCCACATCACCATCAA 57.115 45.000 0.00 0.00 0.00 2.57
2855 3937 2.840038 AGTAAGCTCCACATCACCATCA 59.160 45.455 0.00 0.00 0.00 3.07
2856 3938 3.550437 AGTAAGCTCCACATCACCATC 57.450 47.619 0.00 0.00 0.00 3.51
2857 3939 4.033709 ACTAGTAAGCTCCACATCACCAT 58.966 43.478 0.00 0.00 0.00 3.55
2858 3940 3.195610 CACTAGTAAGCTCCACATCACCA 59.804 47.826 0.00 0.00 0.00 4.17
2859 3941 3.447586 TCACTAGTAAGCTCCACATCACC 59.552 47.826 0.00 0.00 0.00 4.02
2860 3942 4.425520 GTCACTAGTAAGCTCCACATCAC 58.574 47.826 0.00 0.00 0.00 3.06
2861 3943 3.128764 CGTCACTAGTAAGCTCCACATCA 59.871 47.826 0.00 0.00 0.00 3.07
2862 3944 3.696898 CGTCACTAGTAAGCTCCACATC 58.303 50.000 0.00 0.00 0.00 3.06
3091 5364 3.634568 TTTTGCCACGATTTTCACGAT 57.365 38.095 0.00 0.00 34.70 3.73
3198 5480 8.815141 TTGAGTGGTCACAAAATTTCATTATG 57.185 30.769 3.82 0.00 30.10 1.90
3267 5549 9.589461 TGGAATGGAGGTAGTAATAAAAACAAA 57.411 29.630 0.00 0.00 0.00 2.83
3268 5550 9.762381 ATGGAATGGAGGTAGTAATAAAAACAA 57.238 29.630 0.00 0.00 0.00 2.83
3429 5711 7.720957 TCTGCATCTAAAGTGCCAAACATATAT 59.279 33.333 0.00 0.00 41.83 0.86
3443 5725 8.632906 ATGGAGGAAAATATCTGCATCTAAAG 57.367 34.615 0.00 0.00 37.47 1.85
3454 5736 8.519799 TGACCAAGTTTATGGAGGAAAATATC 57.480 34.615 0.00 0.00 43.54 1.63
3612 5894 0.319297 AGGACTTTCGGTTCCGAACG 60.319 55.000 23.44 22.91 46.12 3.95
3654 5936 6.415206 GGTAGCTACCAGGTGTATTGATTA 57.585 41.667 33.64 0.00 45.73 1.75
3656 5938 4.957684 GGTAGCTACCAGGTGTATTGAT 57.042 45.455 33.64 0.00 45.73 2.57
3815 6121 7.489574 TGCAAATAACATTTTTCCCAGAAAC 57.510 32.000 0.00 0.00 0.00 2.78
3958 6268 3.312146 CACACACACACACACACATGTAT 59.688 43.478 0.00 0.00 36.72 2.29
3960 6270 1.468127 CACACACACACACACACATGT 59.532 47.619 0.00 0.00 40.80 3.21
3961 6271 1.468127 ACACACACACACACACACATG 59.532 47.619 0.00 0.00 0.00 3.21
3962 6272 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
4034 6600 2.267642 GGTGCACGGCTACCATGA 59.732 61.111 11.45 0.00 36.94 3.07
4065 6631 5.405063 AATAAGTAGGAGCCTCTGGTAGA 57.595 43.478 0.00 0.00 0.00 2.59
4325 6911 4.518970 TGACACATCTGGCCTTCTTTAAAC 59.481 41.667 3.32 0.00 0.00 2.01
4332 6919 4.022068 TGAAAATTGACACATCTGGCCTTC 60.022 41.667 3.32 0.00 0.00 3.46
4348 6935 5.117584 TCAGCAAGCAACAATGTGAAAATT 58.882 33.333 0.00 0.00 0.00 1.82
4586 7188 8.519799 AATATGAAAATACGAGGTCATGGTTT 57.480 30.769 0.00 0.00 32.99 3.27
4820 7721 6.589523 GTGCAGTGCAACAAATATAAAATCCA 59.410 34.615 21.67 0.00 41.47 3.41
4971 8044 8.993121 GTACTTGTACACTCTATACCGCTATTA 58.007 37.037 0.00 0.00 0.00 0.98
5098 8186 5.070770 TCACATGTTGCCCATTAATGTTC 57.929 39.130 14.25 6.05 29.20 3.18
5115 8203 6.507900 CGTACAGGTCTCTAAATCATCACAT 58.492 40.000 0.00 0.00 0.00 3.21
5223 8316 5.051307 TGAGATGTGTGTCGTTTAAAGAACG 60.051 40.000 5.04 5.04 44.29 3.95
5246 8340 6.535150 TGTACTAAAGCTAGCTAAACTGCATG 59.465 38.462 19.70 3.84 34.99 4.06
5497 8597 2.779951 CGTCCAACGATGGGTCTGCA 62.780 60.000 12.28 0.00 46.05 4.41
5536 8636 2.622011 GGTGCAATTGGTTCGGCGA 61.622 57.895 4.99 4.99 0.00 5.54
5576 8676 2.901042 GGGGTCCATCTCCACGAC 59.099 66.667 0.00 0.00 36.51 4.34
5704 8804 4.785453 CCCTTGGCCACGCTCTCC 62.785 72.222 3.88 0.00 0.00 3.71
5725 8825 1.481056 CCTGGAAGAACACCTCCGGT 61.481 60.000 0.00 0.00 34.07 5.28
5852 8952 1.228521 CCATGTGCCACCAAGGACA 60.229 57.895 0.00 0.00 41.22 4.02
5980 9090 0.477202 ATGCCTAGATCCCCCTGCAT 60.477 55.000 0.00 0.00 34.81 3.96
6054 9171 2.102252 GGCCAGGAACACAAAAATGACA 59.898 45.455 0.00 0.00 0.00 3.58
6066 9183 2.747855 CCAAGCGAGGCCAGGAAC 60.748 66.667 5.01 0.00 0.00 3.62
6098 9215 2.494471 GGTATTTGGGCTGTTTACACCC 59.506 50.000 11.36 11.36 44.52 4.61
6135 9252 8.563732 GCTTAGATTGTCATTATTTTCCTCCTC 58.436 37.037 0.00 0.00 0.00 3.71
6182 9299 5.889853 TCAGGTCTCGTTTTTATAGAGCCTA 59.110 40.000 0.00 0.00 38.27 3.93
6183 9300 4.710375 TCAGGTCTCGTTTTTATAGAGCCT 59.290 41.667 0.00 0.00 38.27 4.58
6184 9301 5.007385 TCAGGTCTCGTTTTTATAGAGCC 57.993 43.478 0.00 0.00 38.27 4.70
6185 9302 4.504826 GCTCAGGTCTCGTTTTTATAGAGC 59.495 45.833 0.00 0.00 38.09 4.09
6188 9305 6.042777 TCATGCTCAGGTCTCGTTTTTATAG 58.957 40.000 0.00 0.00 0.00 1.31
6191 9308 4.245660 CTCATGCTCAGGTCTCGTTTTTA 58.754 43.478 0.00 0.00 0.00 1.52
6195 9312 0.108424 GCTCATGCTCAGGTCTCGTT 60.108 55.000 0.00 0.00 36.03 3.85
6196 9313 1.515020 GCTCATGCTCAGGTCTCGT 59.485 57.895 0.00 0.00 36.03 4.18
6197 9314 1.227205 GGCTCATGCTCAGGTCTCG 60.227 63.158 0.00 0.00 39.59 4.04
6247 9364 1.300233 GAGATAAGCGGCGGAGGTG 60.300 63.158 9.78 0.00 0.00 4.00
6248 9365 2.499827 GGAGATAAGCGGCGGAGGT 61.500 63.158 9.78 0.00 0.00 3.85
6249 9366 2.340443 GGAGATAAGCGGCGGAGG 59.660 66.667 9.78 0.00 0.00 4.30
6250 9367 2.049985 CGGAGATAAGCGGCGGAG 60.050 66.667 9.78 0.00 0.00 4.63
6251 9368 4.280494 GCGGAGATAAGCGGCGGA 62.280 66.667 9.78 0.00 0.00 5.54
6253 9370 4.286320 AGGCGGAGATAAGCGGCG 62.286 66.667 0.51 0.51 33.02 6.46
6254 9371 2.356433 GAGGCGGAGATAAGCGGC 60.356 66.667 0.00 0.00 0.00 6.53
6255 9372 2.340443 GGAGGCGGAGATAAGCGG 59.660 66.667 0.00 0.00 0.00 5.52
6262 9379 4.816984 GGAGTCGGGAGGCGGAGA 62.817 72.222 0.00 0.00 41.26 3.71
6284 9403 2.447714 GGAGGAGGAGGCCATGGAC 61.448 68.421 18.40 14.73 0.00 4.02
6321 9440 2.290745 GGCTGGGGAGGGGATAGT 59.709 66.667 0.00 0.00 0.00 2.12
6322 9441 2.150051 GTGGCTGGGGAGGGGATAG 61.150 68.421 0.00 0.00 0.00 2.08
6323 9442 2.039831 GTGGCTGGGGAGGGGATA 60.040 66.667 0.00 0.00 0.00 2.59
6371 9496 0.326904 TGGATCTGGATCTGCAGGGT 60.327 55.000 15.13 2.64 37.92 4.34
6392 9517 1.204467 CAACACCAGCAACCAACAGTT 59.796 47.619 0.00 0.00 40.16 3.16
6449 9574 4.751431 GGAGCAGCCCAAGACATT 57.249 55.556 0.00 0.00 0.00 2.71
6462 9587 0.530870 GTAACATGAGCCGAGGGAGC 60.531 60.000 0.00 0.00 0.00 4.70
6478 9603 1.708551 CCAAGAAAGAGGGGGTGGTAA 59.291 52.381 0.00 0.00 0.00 2.85
6480 9605 2.081585 GCCAAGAAAGAGGGGGTGGT 62.082 60.000 0.00 0.00 0.00 4.16
6505 9630 1.076485 CCTGGGGCCTGAAATCCAG 60.076 63.158 14.70 14.70 44.60 3.86
6519 9644 1.144057 GACATCGGCCACTACCTGG 59.856 63.158 2.24 0.00 44.08 4.45
6551 9676 4.704833 CCACCCACACCTGCTCCG 62.705 72.222 0.00 0.00 0.00 4.63
6633 9758 1.068083 GAATGCGAGGGAGCGATCA 59.932 57.895 1.84 0.00 40.67 2.92
6636 9761 1.153568 CTTGAATGCGAGGGAGCGA 60.154 57.895 0.00 0.00 40.67 4.93
6655 9780 1.305381 ACAGCCCGTAAGCTCTCCT 60.305 57.895 0.00 0.00 42.61 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.