Multiple sequence alignment - TraesCS7D01G442100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G442100 chr7D 100.000 8112 0 0 1 8112 561556965 561565076 0.000000e+00 14981.0
1 TraesCS7D01G442100 chr7D 84.000 75 12 0 7236 7310 561708565 561708639 1.130000e-08 73.1
2 TraesCS7D01G442100 chr7B 94.435 4636 198 28 1811 6435 609904578 609909164 0.000000e+00 7077.0
3 TraesCS7D01G442100 chr7B 84.390 1672 161 54 22 1669 609901592 609903187 0.000000e+00 1550.0
4 TraesCS7D01G442100 chr7B 88.474 642 55 6 6431 7064 609909208 609909838 0.000000e+00 758.0
5 TraesCS7D01G442100 chr7B 85.583 652 70 14 6431 7065 610147998 610148642 0.000000e+00 662.0
6 TraesCS7D01G442100 chr7B 87.234 423 48 4 6646 7063 610085314 610085735 2.050000e-130 477.0
7 TraesCS7D01G442100 chr7B 90.055 362 36 0 7751 8112 610086496 610086857 3.430000e-128 470.0
8 TraesCS7D01G442100 chr7B 87.059 425 39 8 6646 7065 609912344 609912757 4.430000e-127 466.0
9 TraesCS7D01G442100 chr7B 85.012 427 52 11 6646 7065 609910404 609910825 2.710000e-114 424.0
10 TraesCS7D01G442100 chr7B 87.017 362 45 2 7746 8106 610091924 610092284 2.730000e-109 407.0
11 TraesCS7D01G442100 chr7B 84.466 412 54 9 6641 7044 610298184 610298593 1.640000e-106 398.0
12 TraesCS7D01G442100 chr7B 84.466 412 54 9 6641 7044 610308793 610309202 1.640000e-106 398.0
13 TraesCS7D01G442100 chr7B 83.032 442 42 15 7065 7475 610085818 610086257 3.580000e-98 370.0
14 TraesCS7D01G442100 chr7B 84.777 381 37 5 7732 8112 610161774 610162133 5.980000e-96 363.0
15 TraesCS7D01G442100 chr7B 84.153 366 29 14 7064 7403 610161225 610161587 2.180000e-85 327.0
16 TraesCS7D01G442100 chr7B 80.808 198 21 7 7289 7471 610082199 610082394 1.100000e-28 139.0
17 TraesCS7D01G442100 chr7B 80.303 198 22 8 7289 7471 610293410 610293605 5.110000e-27 134.0
18 TraesCS7D01G442100 chr7B 91.566 83 6 1 6353 6435 610127153 610127234 6.650000e-21 113.0
19 TraesCS7D01G442100 chr7B 95.238 42 2 0 1663 1704 609903213 609903254 5.250000e-07 67.6
20 TraesCS7D01G442100 chr7B 100.000 32 0 0 7031 7062 610161115 610161146 8.790000e-05 60.2
21 TraesCS7D01G442100 chr7A 94.435 3971 187 22 1811 5771 645939384 645943330 0.000000e+00 6078.0
22 TraesCS7D01G442100 chr7A 93.482 1304 55 10 5768 7061 645943655 645944938 0.000000e+00 1910.0
23 TraesCS7D01G442100 chr7A 89.330 806 48 21 875 1669 645938373 645939151 0.000000e+00 977.0
24 TraesCS7D01G442100 chr7A 84.704 693 57 12 22 695 645912540 645913202 0.000000e+00 647.0
25 TraesCS7D01G442100 chr7A 86.441 413 46 7 6653 7061 646081409 646081815 2.080000e-120 444.0
26 TraesCS7D01G442100 chr7A 93.833 227 14 0 7874 8100 645988064 645988290 7.800000e-90 342.0
27 TraesCS7D01G442100 chr7A 80.769 364 39 13 7064 7417 645945017 645945359 1.040000e-63 255.0
28 TraesCS7D01G442100 chr7A 95.946 148 6 0 1663 1810 645939177 645939324 2.930000e-59 241.0
29 TraesCS7D01G442100 chr7A 92.593 81 6 0 6354 6434 646088183 646088263 5.140000e-22 117.0
30 TraesCS7D01G442100 chr7A 84.615 104 14 1 7712 7815 645987966 645988067 1.440000e-17 102.0
31 TraesCS7D01G442100 chr7A 86.207 87 10 2 7236 7321 646488825 646488910 8.670000e-15 93.5
32 TraesCS7D01G442100 chr7A 100.000 36 0 0 6347 6382 645989089 645989124 5.250000e-07 67.6
33 TraesCS7D01G442100 chr1A 95.833 120 5 0 7603 7722 23099107 23098988 2.310000e-45 195.0
34 TraesCS7D01G442100 chr6D 94.215 121 7 0 7599 7719 348647334 348647454 1.390000e-42 185.0
35 TraesCS7D01G442100 chr6D 93.388 121 8 0 7600 7720 400083087 400082967 6.470000e-41 180.0
36 TraesCS7D01G442100 chr5A 94.215 121 7 0 7599 7719 687029314 687029434 1.390000e-42 185.0
37 TraesCS7D01G442100 chr3D 94.872 117 6 0 7603 7719 337959509 337959625 5.000000e-42 183.0
38 TraesCS7D01G442100 chr3B 94.872 117 6 0 7603 7719 588418291 588418175 5.000000e-42 183.0
39 TraesCS7D01G442100 chr2D 94.118 119 7 0 7601 7719 441576791 441576673 1.800000e-41 182.0
40 TraesCS7D01G442100 chr5B 93.388 121 8 0 7602 7722 498715248 498715128 6.470000e-41 180.0
41 TraesCS7D01G442100 chr4D 91.473 129 9 2 7592 7719 500825163 500825036 8.370000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G442100 chr7D 561556965 561565076 8111 False 14981.000000 14981 100.000000 1 8112 1 chr7D.!!$F1 8111
1 TraesCS7D01G442100 chr7B 609901592 609912757 11165 False 1723.766667 7077 89.101333 22 7065 6 chr7B.!!$F7 7043
2 TraesCS7D01G442100 chr7B 610147998 610148642 644 False 662.000000 662 85.583000 6431 7065 1 chr7B.!!$F3 634
3 TraesCS7D01G442100 chr7B 610082199 610086857 4658 False 364.000000 477 85.282250 6646 8112 4 chr7B.!!$F8 1466
4 TraesCS7D01G442100 chr7B 610161115 610162133 1018 False 250.066667 363 89.643333 7031 8112 3 chr7B.!!$F9 1081
5 TraesCS7D01G442100 chr7A 645938373 645945359 6986 False 1892.200000 6078 90.792400 875 7417 5 chr7A.!!$F5 6542
6 TraesCS7D01G442100 chr7A 645912540 645913202 662 False 647.000000 647 84.704000 22 695 1 chr7A.!!$F1 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.105964 TTAGGGTTTGCTTGGGTGCA 60.106 50.000 0.00 0.00 41.65 4.57 F
171 173 0.292566 CGCGTTACGTGTTGGATACG 59.707 55.000 10.36 0.00 46.31 3.06 F
1154 1183 0.618968 GACCCCTCCATCCACAGAGT 60.619 60.000 0.00 0.00 0.00 3.24 F
2466 3762 0.109913 GGCCATCATCCATCAGAGCA 59.890 55.000 0.00 0.00 0.00 4.26 F
2560 3856 0.179084 TGCTGATAACGTGGCTAGCC 60.179 55.000 27.71 27.71 0.00 3.93 F
4472 5780 1.125633 GGTCGACTATTTAGCCCCCA 58.874 55.000 16.46 0.00 0.00 4.96 F
5096 6405 1.296727 CATCTGTGCGTGATGCTCAT 58.703 50.000 1.56 0.00 45.25 2.90 F
6182 7821 1.000607 TGTGTTAGTCAGGACAGACGC 60.001 52.381 1.84 6.93 43.24 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1140 1169 0.177604 GGCTGACTCTGTGGATGGAG 59.822 60.000 0.00 0.00 35.86 3.86 R
1728 2964 0.247854 GAATCTTCTCCTTTGCGCGC 60.248 55.000 27.26 27.26 0.00 6.86 R
2828 4124 0.330604 AGCATCTGCAGGTTGTCCAT 59.669 50.000 15.13 0.00 45.16 3.41 R
4430 5738 0.319555 GCGTACAGGTGTTCAGAGCA 60.320 55.000 0.00 0.00 0.00 4.26 R
4540 5848 1.768684 GCCAAGGTCTGACCACCTCA 61.769 60.000 27.48 0.00 46.97 3.86 R
6088 7727 1.145945 AGTCTCCCGATCCTATCTGCA 59.854 52.381 0.00 0.00 0.00 4.41 R
6446 8133 2.199236 GTGTCTTCGTTCACGGAAAGT 58.801 47.619 0.00 0.00 40.29 2.66 R
7555 12416 0.030504 CACATGCGCCTGTTGAAACA 59.969 50.000 16.07 0.00 37.37 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.861147 ACCTAACCAACCAGCTCTTC 57.139 50.000 0.00 0.00 0.00 2.87
39 40 1.264288 CCAACCAGCTCTTCGTTTGTC 59.736 52.381 0.00 0.00 0.00 3.18
44 45 3.069729 ACCAGCTCTTCGTTTGTCTAGTT 59.930 43.478 0.00 0.00 0.00 2.24
73 74 3.889538 CCCTCGTGGTCATATCTAGTGAA 59.110 47.826 2.33 0.00 0.00 3.18
76 77 3.318275 TCGTGGTCATATCTAGTGAAGGC 59.682 47.826 0.00 0.00 0.00 4.35
84 85 0.609957 TCTAGTGAAGGCCCGAACGA 60.610 55.000 0.00 0.00 0.00 3.85
101 102 1.256812 CGAAAGTGGGGCAAAATCCT 58.743 50.000 0.00 0.00 0.00 3.24
104 105 0.545071 AAGTGGGGCAAAATCCTGGG 60.545 55.000 0.00 0.00 0.00 4.45
136 137 1.599419 GCACGTGTTAGGGTTTGCTTG 60.599 52.381 18.38 0.00 0.00 4.01
142 143 0.105964 TTAGGGTTTGCTTGGGTGCA 60.106 50.000 0.00 0.00 41.65 4.57
154 155 2.112815 GGGTGCACCTATTCCACGC 61.113 63.158 33.91 11.44 35.72 5.34
171 173 0.292566 CGCGTTACGTGTTGGATACG 59.707 55.000 10.36 0.00 46.31 3.06
179 181 1.466950 CGTGTTGGATACGGTGCAAAT 59.533 47.619 0.00 0.00 40.01 2.32
211 230 3.330126 TCCCTCTCGACCCATATTCTT 57.670 47.619 0.00 0.00 0.00 2.52
215 234 4.148838 CCTCTCGACCCATATTCTTCTCT 58.851 47.826 0.00 0.00 0.00 3.10
221 240 5.998981 TCGACCCATATTCTTCTCTCTACTC 59.001 44.000 0.00 0.00 0.00 2.59
233 253 5.049398 TCTCTCTACTCGCTCTTTGTTTC 57.951 43.478 0.00 0.00 0.00 2.78
239 259 2.933906 ACTCGCTCTTTGTTTCGTTTGA 59.066 40.909 0.00 0.00 0.00 2.69
275 295 5.932303 ACTAATTGCTCTGCTTTTCGTTAGA 59.068 36.000 0.00 0.00 0.00 2.10
286 306 5.408604 TGCTTTTCGTTAGACTGGATCTTTC 59.591 40.000 0.00 0.00 39.04 2.62
325 345 7.816513 TGATCAAATCAAAGACACAAAACACAA 59.183 29.630 0.00 0.00 36.11 3.33
548 570 8.885494 ATGGAAAAATCGTGAATTCAAAAAGA 57.115 26.923 10.35 8.04 0.00 2.52
737 766 5.866092 GCTTCCAGTTTTCTTCATGAAATCC 59.134 40.000 9.88 0.00 43.34 3.01
739 768 6.579666 TCCAGTTTTCTTCATGAAATCCAG 57.420 37.500 9.88 0.00 43.34 3.86
753 782 4.037327 TGAAATCCAGCAATGTTCACGAAA 59.963 37.500 0.00 0.00 0.00 3.46
755 784 3.829886 TCCAGCAATGTTCACGAAATC 57.170 42.857 0.00 0.00 0.00 2.17
758 787 3.916172 CCAGCAATGTTCACGAAATCAAG 59.084 43.478 0.00 0.00 0.00 3.02
760 789 5.396484 CAGCAATGTTCACGAAATCAAGAT 58.604 37.500 0.00 0.00 0.00 2.40
852 881 9.980780 AAGAAAAACAAATTATTCACAAAACCG 57.019 25.926 0.00 0.00 0.00 4.44
855 884 9.928236 AAAAACAAATTATTCACAAAACCGATG 57.072 25.926 0.00 0.00 0.00 3.84
856 885 7.650834 AACAAATTATTCACAAAACCGATGG 57.349 32.000 0.00 0.00 0.00 3.51
859 888 1.923356 ATTCACAAAACCGATGGGCT 58.077 45.000 0.00 0.00 36.48 5.19
860 889 0.958091 TTCACAAAACCGATGGGCTG 59.042 50.000 0.00 0.00 36.48 4.85
861 890 0.893270 TCACAAAACCGATGGGCTGG 60.893 55.000 0.00 0.00 36.48 4.85
902 931 2.517875 CTGGCCCATGTAGCAGCC 60.518 66.667 0.00 4.53 45.96 4.85
916 945 3.160047 AGCCGGGCTCTCATCAGG 61.160 66.667 17.69 0.00 30.62 3.86
921 950 2.771762 GGCTCTCATCAGGGGGCT 60.772 66.667 0.00 0.00 0.00 5.19
938 967 2.202878 TCGGCCTTGCGCTGTATC 60.203 61.111 9.73 0.00 44.92 2.24
939 968 3.272334 CGGCCTTGCGCTGTATCC 61.272 66.667 9.73 2.46 39.22 2.59
1046 1075 1.143183 AAATCCATCCGTCCGTCCG 59.857 57.895 0.00 0.00 0.00 4.79
1047 1076 1.610554 AAATCCATCCGTCCGTCCGT 61.611 55.000 0.00 0.00 0.00 4.69
1051 1080 4.746309 ATCCGTCCGTCCGTCCCA 62.746 66.667 0.00 0.00 0.00 4.37
1154 1183 0.618968 GACCCCTCCATCCACAGAGT 60.619 60.000 0.00 0.00 0.00 3.24
1224 1253 3.706373 AGCGGCTTCACCATCGGT 61.706 61.111 0.00 0.00 39.03 4.69
1270 1300 4.096003 GTAAGCAGGCGCCCCTCA 62.096 66.667 26.15 2.39 40.33 3.86
1305 1335 2.975799 TGCTCCGTTCCGTTTGGC 60.976 61.111 0.00 0.00 34.14 4.52
1453 1483 4.689612 ACAGGTCAGTCCGCATATATTT 57.310 40.909 0.00 0.00 41.99 1.40
1455 1485 5.437060 ACAGGTCAGTCCGCATATATTTTT 58.563 37.500 0.00 0.00 41.99 1.94
1503 1538 4.995124 TCACATAGAGCCGTCTAAGTTTC 58.005 43.478 0.00 0.00 38.82 2.78
1508 1543 1.588861 GAGCCGTCTAAGTTTCGATGC 59.411 52.381 0.00 0.00 0.00 3.91
1557 1592 6.767423 TGGTACCATATCTGAAACATGTCATG 59.233 38.462 11.60 11.41 0.00 3.07
1561 1596 5.438117 CATATCTGAAACATGTCATGCGAC 58.562 41.667 12.91 4.99 42.93 5.19
1589 1627 7.846066 TGGGGAAAAATGTACTGAATATTTGG 58.154 34.615 0.00 0.00 30.16 3.28
1728 2964 5.776173 ACCTCAAGAATAGTGGATAGACG 57.224 43.478 0.00 0.00 0.00 4.18
1771 3007 4.641989 ACCTTTGCAAGTATGATCCATGTC 59.358 41.667 0.00 0.00 0.00 3.06
1920 3216 4.298744 GCCTGATGCACTAAAGAATTCC 57.701 45.455 0.65 0.00 40.77 3.01
1945 3241 3.067106 CAGCGTTCATTACACCAAGTCT 58.933 45.455 0.00 0.00 0.00 3.24
1975 3271 8.723942 TTTTAGATTTCCTGAACTCTATCTGC 57.276 34.615 7.53 0.00 34.15 4.26
2034 3330 9.936759 TGGAGAAACTTCTATTTTGTTTTGTTT 57.063 25.926 0.00 0.00 37.73 2.83
2072 3368 1.686587 CCCAAGGAAACTGAACCAACC 59.313 52.381 0.00 0.00 42.68 3.77
2234 3530 3.763897 ACATGTTAGTTCCAAATCCAGGC 59.236 43.478 0.00 0.00 0.00 4.85
2367 3663 2.082231 CACACAGATGAAGAGGGCTTG 58.918 52.381 0.00 0.00 33.61 4.01
2442 3738 2.416162 CGAGCTAACTCCTCTGACAACC 60.416 54.545 0.00 0.00 40.03 3.77
2466 3762 0.109913 GGCCATCATCCATCAGAGCA 59.890 55.000 0.00 0.00 0.00 4.26
2484 3780 4.022849 AGAGCAGCTAAAACAAATGGTGAC 60.023 41.667 0.00 0.00 0.00 3.67
2496 3792 0.754472 ATGGTGACCGTATTACCCCG 59.246 55.000 0.00 0.00 33.51 5.73
2560 3856 0.179084 TGCTGATAACGTGGCTAGCC 60.179 55.000 27.71 27.71 0.00 3.93
2628 3924 3.160679 AGGATCCCACCAAGTCAAAAG 57.839 47.619 8.55 0.00 0.00 2.27
2787 4083 6.604735 CAGTTTAATTACCTGGAAGATCGG 57.395 41.667 0.00 0.00 34.07 4.18
2801 4097 1.765314 AGATCGGATTGGAAGGTCAGG 59.235 52.381 0.00 0.00 0.00 3.86
2828 4124 3.027412 TGTTTTCTGCAACTGGGCTTTA 58.973 40.909 0.00 0.00 34.04 1.85
2874 4170 1.271656 GCTTCAGAGGTTTGCTGCATT 59.728 47.619 1.84 0.00 33.45 3.56
3062 4361 2.032924 CCTGTTCACGTGGACTTTTTCC 59.967 50.000 26.71 0.00 46.13 3.13
3349 4649 4.927049 ACCAGTTTCTGTGGATGATCAAT 58.073 39.130 0.00 0.00 38.57 2.57
3455 4755 6.830838 AGTCCCTGATTATTGGAGAAACATTC 59.169 38.462 0.00 0.00 0.00 2.67
3484 4784 9.248291 GTGCAATACCTGTTTGATTATTTATGG 57.752 33.333 0.00 0.00 0.00 2.74
3485 4785 7.925483 TGCAATACCTGTTTGATTATTTATGGC 59.075 33.333 0.00 0.00 0.00 4.40
3487 4787 9.248291 CAATACCTGTTTGATTATTTATGGCAC 57.752 33.333 0.00 0.00 0.00 5.01
3663 4963 7.920151 TGTTTCACTTCACATTTTGTATTCCAG 59.080 33.333 0.00 0.00 0.00 3.86
3701 5001 4.407945 GGTAGGCTGGTAGAATGTCCTTAA 59.592 45.833 0.00 0.00 0.00 1.85
4037 5339 7.907214 ACCAGACTTAGCTACATTGTTTTAG 57.093 36.000 0.00 0.00 0.00 1.85
4145 5451 9.160496 GATGCATAGATAGATAAAGAAGGTTGG 57.840 37.037 0.00 0.00 0.00 3.77
4150 5456 7.130681 AGATAGATAAAGAAGGTTGGACAGG 57.869 40.000 0.00 0.00 0.00 4.00
4178 5484 1.211709 GGCCACATTACAACGCCAC 59.788 57.895 0.00 0.00 39.50 5.01
4206 5512 2.447582 ATGCTAGGATCCAGGGGAAT 57.552 50.000 15.82 0.00 34.34 3.01
4213 5519 2.184113 AGGATCCAGGGGAATGATCTCT 59.816 50.000 15.82 0.00 36.12 3.10
4245 5551 1.949525 TGACCAAAGCTGAGAAACTGC 59.050 47.619 0.00 0.00 42.46 4.40
4246 5552 1.949525 GACCAAAGCTGAGAAACTGCA 59.050 47.619 0.00 0.00 44.13 4.41
4301 5609 2.091541 CGGCCTGTCCACACAATTATT 58.908 47.619 0.00 0.00 34.01 1.40
4319 5627 2.544844 TTATTCCTCCCCGAGTGTCT 57.455 50.000 0.00 0.00 0.00 3.41
4344 5652 2.417243 GCCGGCAAGCAGAAATAATTGT 60.417 45.455 24.80 0.00 0.00 2.71
4345 5653 3.438360 CCGGCAAGCAGAAATAATTGTC 58.562 45.455 0.00 0.00 0.00 3.18
4472 5780 1.125633 GGTCGACTATTTAGCCCCCA 58.874 55.000 16.46 0.00 0.00 4.96
4482 5790 4.765195 ATTTAGCCCCCATACATTCCAT 57.235 40.909 0.00 0.00 0.00 3.41
4514 5822 7.230849 TCTTAGGTTCGTATAACACTGGAAA 57.769 36.000 0.00 0.00 0.00 3.13
4596 5904 4.668576 ACGTTGTTGTGATCATCATGAC 57.331 40.909 0.00 0.00 0.00 3.06
4731 6039 6.073327 CAAGAATTGCTCTCATATGCATGT 57.927 37.500 10.16 0.00 40.39 3.21
4828 6136 7.835634 TGTTTCGTTGCTACACATATCAATA 57.164 32.000 0.00 0.00 0.00 1.90
4860 6169 6.652205 TTTCTGTAGATGGGACCCTTTATT 57.348 37.500 13.00 0.00 0.00 1.40
4989 6298 5.627503 GCCTGCAGGTTGAAAAATCCATTAT 60.628 40.000 32.81 0.00 37.57 1.28
5030 6339 6.149973 TGTTTCATATCTTTGTCCAGCTTCAG 59.850 38.462 0.00 0.00 0.00 3.02
5096 6405 1.296727 CATCTGTGCGTGATGCTCAT 58.703 50.000 1.56 0.00 45.25 2.90
5220 6529 7.549134 TGATGTATCAACAAATGTCTGTAGTCC 59.451 37.037 0.00 0.00 39.58 3.85
5265 6574 4.103469 TCTTAAACCAGAACTGCCCTACAA 59.897 41.667 0.00 0.00 0.00 2.41
5288 6597 7.731054 CAATTAGGGATTGTCTAAGCTAGAGT 58.269 38.462 0.00 0.00 40.23 3.24
5312 6621 6.370442 GTCTGTTAATATGTGTAACTGCACCA 59.630 38.462 0.00 0.00 38.52 4.17
5325 6635 5.762825 AACTGCACCATGCTTTATCTATG 57.237 39.130 2.02 0.00 45.31 2.23
5342 6652 4.250464 TCTATGTGTGCCTTCTTTTACCG 58.750 43.478 0.00 0.00 0.00 4.02
5345 6655 3.482436 TGTGTGCCTTCTTTTACCGATT 58.518 40.909 0.00 0.00 0.00 3.34
5387 6697 6.519679 TGCTTATGATGCATCTCTTTGTTT 57.480 33.333 26.32 5.08 35.31 2.83
5642 6952 6.127842 GCCTACCAAATTGGACGAAAGAATTA 60.128 38.462 20.25 0.00 40.96 1.40
5673 6983 5.097529 GGACATGCATACAGTTTGATGTTG 58.902 41.667 0.00 0.00 34.56 3.33
5887 7525 4.540099 ACAGGAAGAGTGAATTCCCCATTA 59.460 41.667 2.27 0.00 46.24 1.90
5888 7526 5.194537 ACAGGAAGAGTGAATTCCCCATTAT 59.805 40.000 2.27 0.00 46.24 1.28
6088 7727 2.911926 GCCACCTGGAGGAAAGGCT 61.912 63.158 14.86 0.00 42.92 4.58
6182 7821 1.000607 TGTGTTAGTCAGGACAGACGC 60.001 52.381 1.84 6.93 43.24 5.19
6205 7844 7.387948 ACGCTGTTTGTAGTTCTGAATTCTTAT 59.612 33.333 7.05 0.00 0.00 1.73
6210 7849 9.677567 GTTTGTAGTTCTGAATTCTTATGCAAA 57.322 29.630 7.05 7.65 0.00 3.68
6213 7852 8.721478 TGTAGTTCTGAATTCTTATGCAAAGTC 58.279 33.333 7.05 0.00 0.00 3.01
6215 7854 6.716628 AGTTCTGAATTCTTATGCAAAGTCCA 59.283 34.615 7.05 0.00 0.00 4.02
6217 7856 6.240894 TCTGAATTCTTATGCAAAGTCCACT 58.759 36.000 7.05 0.00 0.00 4.00
6404 8043 8.568732 TTGAAATTTCAAAATCGTTAGGTCAC 57.431 30.769 27.22 0.00 43.62 3.67
6405 8044 7.708051 TGAAATTTCAAAATCGTTAGGTCACA 58.292 30.769 18.45 0.00 33.55 3.58
6446 8133 4.771903 TGTTGTACTTTGTGAAGCAGGTA 58.228 39.130 0.00 0.00 36.29 3.08
6500 8187 2.009774 CGATTCATCTGTGTGAACCCC 58.990 52.381 0.00 0.00 40.60 4.95
6597 8289 4.136796 AGCCTTCATTATGCGCATCTAAA 58.863 39.130 29.11 16.72 0.00 1.85
6717 8414 3.338249 TCCATGACTAGTTTCAGCAAGC 58.662 45.455 0.00 0.00 0.00 4.01
6807 8507 3.772025 AGTACTGGACTGGAAAGATGAGG 59.228 47.826 0.00 0.00 36.87 3.86
6978 11611 8.796475 ACATTTTATATTCAGCACAAACTCAGT 58.204 29.630 0.00 0.00 0.00 3.41
6999 11638 6.159575 TCAGTAGTCCATATTGGGGAATTTGA 59.840 38.462 0.00 0.00 38.32 2.69
7008 11647 2.517959 TGGGGAATTTGACAGCTTCAG 58.482 47.619 0.00 0.00 34.94 3.02
7018 11657 4.090761 TGACAGCTTCAGTTCTCCATTT 57.909 40.909 0.00 0.00 0.00 2.32
7091 11812 4.020617 CTTGGTGCTCCGCCTCCA 62.021 66.667 0.00 0.00 34.70 3.86
7145 11866 0.836606 TCTGTCTCTGTGCCCACAAA 59.163 50.000 2.45 0.00 41.33 2.83
7155 11877 2.993471 GCCCACAAATCTGGTGCCG 61.993 63.158 0.00 0.00 34.94 5.69
7179 11901 0.539438 TGCCCTCCATTGGTGTTGTC 60.539 55.000 1.86 0.00 0.00 3.18
7200 11935 1.345410 GCGTGTGCTTGTTTTGTTGT 58.655 45.000 0.00 0.00 38.39 3.32
7204 11939 4.767075 CGTGTGCTTGTTTTGTTGTTTTT 58.233 34.783 0.00 0.00 0.00 1.94
7250 11993 4.317139 CGTCCGTATCTACAAATTTCTGCG 60.317 45.833 0.00 0.00 0.00 5.18
7251 11994 4.802039 GTCCGTATCTACAAATTTCTGCGA 59.198 41.667 0.00 0.00 0.00 5.10
7346 12092 7.269316 TCTGTTGTTAATGTGACTGTTGTCTA 58.731 34.615 0.00 0.00 43.29 2.59
7347 12093 7.766738 TCTGTTGTTAATGTGACTGTTGTCTAA 59.233 33.333 0.00 0.00 43.29 2.10
7348 12094 7.915508 TGTTGTTAATGTGACTGTTGTCTAAG 58.084 34.615 0.00 0.00 43.29 2.18
7349 12095 7.551262 TGTTGTTAATGTGACTGTTGTCTAAGT 59.449 33.333 0.00 0.00 43.29 2.24
7350 12096 7.709269 TGTTAATGTGACTGTTGTCTAAGTC 57.291 36.000 0.00 0.00 43.29 3.01
7351 12097 7.497595 TGTTAATGTGACTGTTGTCTAAGTCT 58.502 34.615 4.62 0.00 42.72 3.24
7352 12098 7.438160 TGTTAATGTGACTGTTGTCTAAGTCTG 59.562 37.037 4.62 0.00 42.72 3.51
7353 12099 4.322080 TGTGACTGTTGTCTAAGTCTGG 57.678 45.455 4.62 0.00 42.72 3.86
7354 12100 3.069586 TGTGACTGTTGTCTAAGTCTGGG 59.930 47.826 4.62 0.00 42.72 4.45
7356 12102 3.709653 TGACTGTTGTCTAAGTCTGGGTT 59.290 43.478 4.62 0.00 42.72 4.11
7357 12103 4.163458 TGACTGTTGTCTAAGTCTGGGTTT 59.837 41.667 4.62 0.00 42.72 3.27
7360 12106 5.589050 ACTGTTGTCTAAGTCTGGGTTTTTC 59.411 40.000 0.00 0.00 0.00 2.29
7361 12107 4.885325 TGTTGTCTAAGTCTGGGTTTTTCC 59.115 41.667 0.00 0.00 0.00 3.13
7415 12178 6.350194 GCCTAATTTGTCTTAGGGGTTTTCAG 60.350 42.308 10.91 0.00 45.35 3.02
7433 12196 3.017442 TCAGGTCATCCTAACGTCTCTG 58.983 50.000 0.00 0.00 43.07 3.35
7436 12199 3.053842 AGGTCATCCTAACGTCTCTGGTA 60.054 47.826 0.00 0.00 43.12 3.25
7437 12200 3.315749 GGTCATCCTAACGTCTCTGGTAG 59.684 52.174 0.00 0.00 0.00 3.18
7439 12202 1.760192 TCCTAACGTCTCTGGTAGGC 58.240 55.000 4.19 0.00 0.00 3.93
7475 12241 3.411446 TGCAACTTGTCCCTATTGTCTG 58.589 45.455 0.00 0.00 0.00 3.51
7476 12242 2.162408 GCAACTTGTCCCTATTGTCTGC 59.838 50.000 0.00 0.00 0.00 4.26
7477 12243 3.411446 CAACTTGTCCCTATTGTCTGCA 58.589 45.455 0.00 0.00 0.00 4.41
7478 12244 4.012374 CAACTTGTCCCTATTGTCTGCAT 58.988 43.478 0.00 0.00 0.00 3.96
7479 12245 3.878778 ACTTGTCCCTATTGTCTGCATC 58.121 45.455 0.00 0.00 0.00 3.91
7480 12246 3.209410 CTTGTCCCTATTGTCTGCATCC 58.791 50.000 0.00 0.00 0.00 3.51
7489 12350 2.307496 TGTCTGCATCCCCAATTTGT 57.693 45.000 0.00 0.00 0.00 2.83
7497 12358 6.838090 TCTGCATCCCCAATTTGTTAATCATA 59.162 34.615 0.00 0.00 0.00 2.15
7505 12366 8.923270 CCCCAATTTGTTAATCATATTAGTGGT 58.077 33.333 0.00 0.00 0.00 4.16
7513 12374 8.268605 TGTTAATCATATTAGTGGTTGCTGGTA 58.731 33.333 0.00 0.00 0.00 3.25
7521 12382 4.373156 AGTGGTTGCTGGTAAAGATCTT 57.627 40.909 0.88 0.88 0.00 2.40
7528 12389 4.517285 TGCTGGTAAAGATCTTGATGACC 58.483 43.478 9.17 14.03 0.00 4.02
7531 12392 2.872858 GGTAAAGATCTTGATGACCGCC 59.127 50.000 9.17 0.00 0.00 6.13
7533 12394 2.322355 AAGATCTTGATGACCGCCTG 57.678 50.000 7.30 0.00 0.00 4.85
7534 12395 1.198713 AGATCTTGATGACCGCCTGT 58.801 50.000 0.00 0.00 0.00 4.00
7547 12408 2.080693 CCGCCTGTGCATGTAAAAGTA 58.919 47.619 0.00 0.00 37.32 2.24
7548 12409 2.095853 CCGCCTGTGCATGTAAAAGTAG 59.904 50.000 0.00 0.00 37.32 2.57
7549 12410 2.476185 CGCCTGTGCATGTAAAAGTAGC 60.476 50.000 0.00 0.00 37.32 3.58
7550 12411 2.749621 GCCTGTGCATGTAAAAGTAGCT 59.250 45.455 0.00 0.00 37.47 3.32
7551 12412 3.938963 GCCTGTGCATGTAAAAGTAGCTA 59.061 43.478 0.00 0.00 37.47 3.32
7552 12413 4.201822 GCCTGTGCATGTAAAAGTAGCTAC 60.202 45.833 16.43 16.43 37.47 3.58
7553 12414 4.332819 CCTGTGCATGTAAAAGTAGCTACC 59.667 45.833 20.31 5.24 0.00 3.18
7554 12415 3.930229 TGTGCATGTAAAAGTAGCTACCG 59.070 43.478 20.31 0.79 0.00 4.02
7555 12416 3.930848 GTGCATGTAAAAGTAGCTACCGT 59.069 43.478 20.31 6.05 0.00 4.83
7556 12417 3.930229 TGCATGTAAAAGTAGCTACCGTG 59.070 43.478 20.31 15.64 0.00 4.94
7557 12418 3.930848 GCATGTAAAAGTAGCTACCGTGT 59.069 43.478 20.31 6.67 0.00 4.49
7558 12419 4.390909 GCATGTAAAAGTAGCTACCGTGTT 59.609 41.667 20.31 11.33 0.00 3.32
7559 12420 5.106830 GCATGTAAAAGTAGCTACCGTGTTT 60.107 40.000 20.31 16.23 0.00 2.83
7560 12421 6.531439 CATGTAAAAGTAGCTACCGTGTTTC 58.469 40.000 20.31 7.89 0.00 2.78
7561 12422 5.599732 TGTAAAAGTAGCTACCGTGTTTCA 58.400 37.500 20.31 10.09 0.00 2.69
7562 12423 6.047870 TGTAAAAGTAGCTACCGTGTTTCAA 58.952 36.000 20.31 4.25 0.00 2.69
7563 12424 5.413969 AAAAGTAGCTACCGTGTTTCAAC 57.586 39.130 20.31 0.00 0.00 3.18
7564 12425 3.738830 AGTAGCTACCGTGTTTCAACA 57.261 42.857 20.31 0.00 36.38 3.33
7565 12426 3.650139 AGTAGCTACCGTGTTTCAACAG 58.350 45.455 20.31 0.00 40.05 3.16
7566 12427 1.878953 AGCTACCGTGTTTCAACAGG 58.121 50.000 5.56 5.56 42.66 4.00
7567 12428 0.237498 GCTACCGTGTTTCAACAGGC 59.763 55.000 6.82 0.00 41.92 4.85
7568 12429 0.511221 CTACCGTGTTTCAACAGGCG 59.489 55.000 6.82 2.07 41.92 5.52
7575 12436 1.007502 TTTCAACAGGCGCATGTGC 60.008 52.632 29.94 23.05 32.52 4.57
7604 12465 0.811616 CTCTCCGCCTTGCCATGTAC 60.812 60.000 0.00 0.00 0.00 2.90
7605 12466 1.221840 CTCCGCCTTGCCATGTACT 59.778 57.895 0.00 0.00 0.00 2.73
7606 12467 0.811616 CTCCGCCTTGCCATGTACTC 60.812 60.000 0.00 0.00 0.00 2.59
7608 12469 1.819632 CGCCTTGCCATGTACTCCC 60.820 63.158 0.00 0.00 0.00 4.30
7609 12470 1.609783 GCCTTGCCATGTACTCCCT 59.390 57.895 0.00 0.00 0.00 4.20
7610 12471 0.464554 GCCTTGCCATGTACTCCCTC 60.465 60.000 0.00 0.00 0.00 4.30
7611 12472 0.181350 CCTTGCCATGTACTCCCTCC 59.819 60.000 0.00 0.00 0.00 4.30
7612 12473 0.911769 CTTGCCATGTACTCCCTCCA 59.088 55.000 0.00 0.00 0.00 3.86
7613 12474 1.492176 CTTGCCATGTACTCCCTCCAT 59.508 52.381 0.00 0.00 0.00 3.41
7614 12475 1.131638 TGCCATGTACTCCCTCCATC 58.868 55.000 0.00 0.00 0.00 3.51
7615 12476 0.398318 GCCATGTACTCCCTCCATCC 59.602 60.000 0.00 0.00 0.00 3.51
7617 12478 0.681733 CATGTACTCCCTCCATCCGG 59.318 60.000 0.00 0.00 0.00 5.14
7618 12479 0.561184 ATGTACTCCCTCCATCCGGA 59.439 55.000 6.61 6.61 39.79 5.14
7619 12480 0.337082 TGTACTCCCTCCATCCGGAA 59.663 55.000 9.01 0.00 42.21 4.30
7620 12481 1.062428 TGTACTCCCTCCATCCGGAAT 60.062 52.381 9.01 0.00 42.21 3.01
7621 12482 2.047830 GTACTCCCTCCATCCGGAATT 58.952 52.381 9.01 0.00 42.21 2.17
7623 12484 2.991580 ACTCCCTCCATCCGGAATTAT 58.008 47.619 9.01 0.00 42.21 1.28
7624 12485 3.327439 ACTCCCTCCATCCGGAATTATT 58.673 45.455 9.01 0.00 42.21 1.40
7627 12488 3.461831 TCCCTCCATCCGGAATTATTTGT 59.538 43.478 9.01 0.00 42.21 2.83
7628 12489 3.821033 CCCTCCATCCGGAATTATTTGTC 59.179 47.826 9.01 0.00 42.21 3.18
7629 12490 3.821033 CCTCCATCCGGAATTATTTGTCC 59.179 47.826 9.01 0.00 42.21 4.02
7630 12491 3.821033 CTCCATCCGGAATTATTTGTCCC 59.179 47.826 9.01 0.00 42.21 4.46
7631 12492 3.203263 TCCATCCGGAATTATTTGTCCCA 59.797 43.478 9.01 0.00 38.83 4.37
7632 12493 3.569701 CCATCCGGAATTATTTGTCCCAG 59.430 47.826 9.01 0.00 0.00 4.45
7633 12494 3.290948 TCCGGAATTATTTGTCCCAGG 57.709 47.619 0.00 0.00 0.00 4.45
7634 12495 2.847449 TCCGGAATTATTTGTCCCAGGA 59.153 45.455 0.00 0.00 0.00 3.86
7635 12496 3.267291 TCCGGAATTATTTGTCCCAGGAA 59.733 43.478 0.00 0.00 0.00 3.36
7636 12497 4.079443 TCCGGAATTATTTGTCCCAGGAAT 60.079 41.667 0.00 0.00 0.00 3.01
7637 12498 4.037923 CCGGAATTATTTGTCCCAGGAATG 59.962 45.833 0.00 0.00 0.00 2.67
7638 12499 4.037923 CGGAATTATTTGTCCCAGGAATGG 59.962 45.833 0.00 0.00 0.00 3.16
7639 12500 5.208121 GGAATTATTTGTCCCAGGAATGGA 58.792 41.667 0.00 0.00 0.00 3.41
7640 12501 5.840693 GGAATTATTTGTCCCAGGAATGGAT 59.159 40.000 0.00 0.00 33.65 3.41
7641 12502 6.239402 GGAATTATTTGTCCCAGGAATGGATG 60.239 42.308 0.00 0.00 33.65 3.51
7642 12503 3.763557 ATTTGTCCCAGGAATGGATGT 57.236 42.857 0.00 0.00 33.65 3.06
7643 12504 4.879295 ATTTGTCCCAGGAATGGATGTA 57.121 40.909 0.00 0.00 33.65 2.29
7644 12505 4.879295 TTTGTCCCAGGAATGGATGTAT 57.121 40.909 0.00 0.00 33.65 2.29
7645 12506 4.437682 TTGTCCCAGGAATGGATGTATC 57.562 45.455 0.00 0.00 33.65 2.24
7646 12507 3.668821 TGTCCCAGGAATGGATGTATCT 58.331 45.455 0.00 0.00 33.65 1.98
7647 12508 4.826616 TGTCCCAGGAATGGATGTATCTA 58.173 43.478 0.00 0.00 33.65 1.98
7648 12509 5.223655 TGTCCCAGGAATGGATGTATCTAA 58.776 41.667 0.00 0.00 33.65 2.10
7649 12510 5.669904 TGTCCCAGGAATGGATGTATCTAAA 59.330 40.000 0.00 0.00 33.65 1.85
7650 12511 6.332635 TGTCCCAGGAATGGATGTATCTAAAT 59.667 38.462 0.00 0.00 33.65 1.40
7651 12512 6.656693 GTCCCAGGAATGGATGTATCTAAATG 59.343 42.308 0.00 0.00 33.65 2.32
7652 12513 6.332635 TCCCAGGAATGGATGTATCTAAATGT 59.667 38.462 0.00 0.00 0.00 2.71
7653 12514 7.515861 TCCCAGGAATGGATGTATCTAAATGTA 59.484 37.037 0.00 0.00 0.00 2.29
7654 12515 8.331740 CCCAGGAATGGATGTATCTAAATGTAT 58.668 37.037 0.00 0.00 0.00 2.29
7655 12516 9.745018 CCAGGAATGGATGTATCTAAATGTATT 57.255 33.333 0.00 0.00 0.00 1.89
7692 12553 7.496529 ACATCCATTTGTATCCATTTCTACG 57.503 36.000 0.00 0.00 0.00 3.51
7693 12554 7.279615 ACATCCATTTGTATCCATTTCTACGA 58.720 34.615 0.00 0.00 0.00 3.43
7694 12555 7.226720 ACATCCATTTGTATCCATTTCTACGAC 59.773 37.037 0.00 0.00 0.00 4.34
7695 12556 6.645306 TCCATTTGTATCCATTTCTACGACA 58.355 36.000 0.00 0.00 0.00 4.35
7696 12557 7.106890 TCCATTTGTATCCATTTCTACGACAA 58.893 34.615 0.00 0.00 0.00 3.18
7697 12558 7.279981 TCCATTTGTATCCATTTCTACGACAAG 59.720 37.037 0.00 0.00 0.00 3.16
7698 12559 7.065803 CCATTTGTATCCATTTCTACGACAAGT 59.934 37.037 0.00 0.00 0.00 3.16
7699 12560 9.093970 CATTTGTATCCATTTCTACGACAAGTA 57.906 33.333 0.00 0.00 0.00 2.24
7700 12561 9.832445 ATTTGTATCCATTTCTACGACAAGTAT 57.168 29.630 0.00 0.00 34.34 2.12
7701 12562 9.661563 TTTGTATCCATTTCTACGACAAGTATT 57.338 29.630 0.00 0.00 34.34 1.89
7702 12563 9.661563 TTGTATCCATTTCTACGACAAGTATTT 57.338 29.630 0.00 0.00 34.34 1.40
7703 12564 9.309516 TGTATCCATTTCTACGACAAGTATTTC 57.690 33.333 0.00 0.00 34.34 2.17
7704 12565 7.787725 ATCCATTTCTACGACAAGTATTTCC 57.212 36.000 0.00 0.00 34.34 3.13
7705 12566 5.808540 TCCATTTCTACGACAAGTATTTCCG 59.191 40.000 0.00 0.00 34.34 4.30
7706 12567 5.006358 CCATTTCTACGACAAGTATTTCCGG 59.994 44.000 0.00 0.00 34.34 5.14
7707 12568 5.389859 TTTCTACGACAAGTATTTCCGGA 57.610 39.130 0.00 0.00 34.34 5.14
7708 12569 4.361451 TCTACGACAAGTATTTCCGGAC 57.639 45.455 1.83 0.00 34.34 4.79
7709 12570 1.986698 ACGACAAGTATTTCCGGACG 58.013 50.000 1.83 3.25 0.00 4.79
7710 12571 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
7711 12572 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
7712 12573 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
7713 12574 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
7714 12575 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
7715 12576 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
7716 12577 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
7717 12578 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
7718 12579 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
7719 12580 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
7720 12581 3.217743 CCGGACGGAGGGAGTAGC 61.218 72.222 4.40 0.00 37.50 3.58
7721 12582 2.124236 CGGACGGAGGGAGTAGCT 60.124 66.667 0.00 0.00 0.00 3.32
7722 12583 2.188161 CGGACGGAGGGAGTAGCTC 61.188 68.421 0.00 0.00 0.00 4.09
7723 12584 1.076923 GGACGGAGGGAGTAGCTCA 60.077 63.158 0.00 0.00 31.08 4.26
7724 12585 1.385756 GGACGGAGGGAGTAGCTCAC 61.386 65.000 0.00 0.00 33.42 3.51
7725 12586 0.680280 GACGGAGGGAGTAGCTCACA 60.680 60.000 0.00 0.00 36.16 3.58
7726 12587 0.681564 ACGGAGGGAGTAGCTCACAG 60.682 60.000 0.00 0.00 36.16 3.66
7727 12588 1.388065 CGGAGGGAGTAGCTCACAGG 61.388 65.000 0.00 0.00 36.16 4.00
7728 12589 1.681486 GGAGGGAGTAGCTCACAGGC 61.681 65.000 0.00 0.00 36.16 4.85
7729 12590 2.010582 GAGGGAGTAGCTCACAGGCG 62.011 65.000 0.00 0.00 36.16 5.52
7730 12591 2.496817 GGAGTAGCTCACAGGCGG 59.503 66.667 0.00 0.00 37.29 6.13
7741 12602 2.997315 CAGGCGGTCACCTCCAGA 60.997 66.667 5.41 0.00 38.26 3.86
7744 12605 3.386237 GCGGTCACCTCCAGAGCT 61.386 66.667 0.00 0.00 0.00 4.09
7747 12608 2.587247 GGTCACCTCCAGAGCTGCA 61.587 63.158 1.02 0.00 0.00 4.41
7753 12614 0.971959 CCTCCAGAGCTGCAGTCTCT 60.972 60.000 25.57 25.57 41.28 3.10
7765 12626 0.964700 CAGTCTCTGCACTCCACTCA 59.035 55.000 0.00 0.00 0.00 3.41
7826 12687 1.584483 GCATTGCTTGCCGATGACG 60.584 57.895 0.16 0.00 46.15 4.35
7867 12728 0.252696 TGGCTGGTCATAGTCCACCT 60.253 55.000 0.00 0.00 33.36 4.00
7871 12732 2.461695 CTGGTCATAGTCCACCTCTGT 58.538 52.381 0.00 0.00 33.36 3.41
7872 12733 2.834549 CTGGTCATAGTCCACCTCTGTT 59.165 50.000 0.00 0.00 33.36 3.16
7898 12759 2.366916 CGTCCTCCATCTCTGCCTTATT 59.633 50.000 0.00 0.00 0.00 1.40
7978 12839 1.418373 CTTCGCTGTCATCAACGTCA 58.582 50.000 0.00 0.00 35.12 4.35
8025 12886 0.596600 TGCGACTCCACTTTCACGTC 60.597 55.000 0.00 0.00 0.00 4.34
8033 12894 3.220110 TCCACTTTCACGTCTAGAGTGT 58.780 45.455 16.77 6.90 40.28 3.55
8082 12943 3.185880 TCTAGTTGCTACCACCCTTCT 57.814 47.619 0.00 0.00 0.00 2.85
8094 12955 3.967987 ACCACCCTTCTGATACCTATCAC 59.032 47.826 0.00 0.00 37.76 3.06
8100 12961 5.712917 CCCTTCTGATACCTATCACTCCTAC 59.287 48.000 0.00 0.00 37.76 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.169769 TGGTTAGGTTCGCCCTTCTATG 59.830 50.000 0.00 0.00 42.73 2.23
2 3 1.941377 TGGTTAGGTTCGCCCTTCTA 58.059 50.000 0.00 0.00 42.73 2.10
3 4 1.061546 TTGGTTAGGTTCGCCCTTCT 58.938 50.000 0.00 0.00 42.73 2.85
4 5 1.162698 GTTGGTTAGGTTCGCCCTTC 58.837 55.000 0.00 0.00 42.73 3.46
5 6 0.251033 GGTTGGTTAGGTTCGCCCTT 60.251 55.000 0.00 0.00 42.73 3.95
8 9 1.583495 GCTGGTTGGTTAGGTTCGCC 61.583 60.000 0.00 0.00 37.60 5.54
9 10 0.605589 AGCTGGTTGGTTAGGTTCGC 60.606 55.000 0.00 0.00 0.00 4.70
11 12 2.861147 AGAGCTGGTTGGTTAGGTTC 57.139 50.000 0.00 0.00 0.00 3.62
12 13 2.550208 CGAAGAGCTGGTTGGTTAGGTT 60.550 50.000 0.00 0.00 0.00 3.50
14 15 1.002087 ACGAAGAGCTGGTTGGTTAGG 59.998 52.381 0.00 0.00 0.00 2.69
15 16 2.457366 ACGAAGAGCTGGTTGGTTAG 57.543 50.000 0.00 0.00 0.00 2.34
17 18 1.676006 CAAACGAAGAGCTGGTTGGTT 59.324 47.619 0.00 0.00 0.00 3.67
18 19 1.308998 CAAACGAAGAGCTGGTTGGT 58.691 50.000 0.00 0.00 0.00 3.67
19 20 1.264288 GACAAACGAAGAGCTGGTTGG 59.736 52.381 0.00 0.00 0.00 3.77
20 21 2.213499 AGACAAACGAAGAGCTGGTTG 58.787 47.619 0.00 0.00 0.00 3.77
32 33 5.061808 CGAGGGTAATTGAACTAGACAAACG 59.938 44.000 0.00 0.00 0.00 3.60
73 74 2.032071 CCACTTTCGTTCGGGCCT 59.968 61.111 0.84 0.00 0.00 5.19
76 77 3.053896 GCCCCACTTTCGTTCGGG 61.054 66.667 0.00 0.00 38.52 5.14
84 85 1.351076 CCAGGATTTTGCCCCACTTT 58.649 50.000 0.00 0.00 0.00 2.66
101 102 1.827789 GTGCAGCAACAGAACCCCA 60.828 57.895 0.00 0.00 0.00 4.96
104 105 1.009675 CACGTGCAGCAACAGAACC 60.010 57.895 0.82 0.00 0.00 3.62
136 137 2.112815 GCGTGGAATAGGTGCACCC 61.113 63.158 32.29 16.61 45.34 4.61
142 143 3.334078 CGTAACGCGTGGAATAGGT 57.666 52.632 14.98 0.00 35.54 3.08
154 155 1.650153 CACCGTATCCAACACGTAACG 59.350 52.381 0.00 0.00 37.71 3.18
171 173 4.740431 GGCCCACGCATTTGCACC 62.740 66.667 3.13 0.00 42.21 5.01
211 230 4.378563 CGAAACAAAGAGCGAGTAGAGAGA 60.379 45.833 0.00 0.00 0.00 3.10
215 234 3.637998 ACGAAACAAAGAGCGAGTAGA 57.362 42.857 0.00 0.00 0.00 2.59
221 240 3.319238 AGTCAAACGAAACAAAGAGCG 57.681 42.857 0.00 0.00 0.00 5.03
258 278 2.413453 CCAGTCTAACGAAAAGCAGAGC 59.587 50.000 0.00 0.00 0.00 4.09
259 279 3.914312 TCCAGTCTAACGAAAAGCAGAG 58.086 45.455 0.00 0.00 0.00 3.35
275 295 9.246670 TCATGATTTAACAATGAAAGATCCAGT 57.753 29.630 0.00 0.00 0.00 4.00
576 598 7.491048 TGAGTTGGCTAAACATTCTTTTTGAAC 59.509 33.333 5.76 0.00 41.61 3.18
580 602 8.785329 TTTTGAGTTGGCTAAACATTCTTTTT 57.215 26.923 5.76 0.00 41.61 1.94
695 718 7.707893 ACTGGAAGCATGAAAATAATTATGCAC 59.292 33.333 10.40 4.96 46.20 4.57
696 719 7.784037 ACTGGAAGCATGAAAATAATTATGCA 58.216 30.769 10.40 0.00 46.20 3.96
737 766 4.786507 TCTTGATTTCGTGAACATTGCTG 58.213 39.130 0.00 0.00 0.00 4.41
739 768 6.583806 AGAAATCTTGATTTCGTGAACATTGC 59.416 34.615 22.51 3.78 43.34 3.56
834 863 5.063312 GCCCATCGGTTTTGTGAATAATTTG 59.937 40.000 0.00 0.00 0.00 2.32
836 865 4.466015 AGCCCATCGGTTTTGTGAATAATT 59.534 37.500 0.00 0.00 0.00 1.40
837 866 4.023291 AGCCCATCGGTTTTGTGAATAAT 58.977 39.130 0.00 0.00 0.00 1.28
838 867 3.192422 CAGCCCATCGGTTTTGTGAATAA 59.808 43.478 0.00 0.00 0.00 1.40
840 869 1.545582 CAGCCCATCGGTTTTGTGAAT 59.454 47.619 0.00 0.00 0.00 2.57
842 871 0.893270 CCAGCCCATCGGTTTTGTGA 60.893 55.000 0.00 0.00 0.00 3.58
844 873 2.275380 GCCAGCCCATCGGTTTTGT 61.275 57.895 0.00 0.00 0.00 2.83
852 881 4.962836 CCCATCGGCCAGCCCATC 62.963 72.222 2.24 0.00 0.00 3.51
864 893 3.055602 AGCTCATTTTCCTTTTGCCCATC 60.056 43.478 0.00 0.00 0.00 3.51
866 895 2.037511 CAGCTCATTTTCCTTTTGCCCA 59.962 45.455 0.00 0.00 0.00 5.36
867 896 2.613725 CCAGCTCATTTTCCTTTTGCCC 60.614 50.000 0.00 0.00 0.00 5.36
871 900 1.625315 GGGCCAGCTCATTTTCCTTTT 59.375 47.619 4.39 0.00 0.00 2.27
873 902 0.114954 TGGGCCAGCTCATTTTCCTT 59.885 50.000 0.00 0.00 0.00 3.36
902 931 3.554342 CCCCCTGATGAGAGCCCG 61.554 72.222 0.00 0.00 0.00 6.13
921 950 2.202878 GATACAGCGCAAGGCCGA 60.203 61.111 11.47 0.00 45.17 5.54
1013 1042 1.935931 ATTTGGGGTCTGGGGAGGG 60.936 63.158 0.00 0.00 0.00 4.30
1046 1075 3.009714 GGAGGAGTGGGGTGGGAC 61.010 72.222 0.00 0.00 0.00 4.46
1047 1076 3.208592 AGGAGGAGTGGGGTGGGA 61.209 66.667 0.00 0.00 0.00 4.37
1051 1080 1.003573 GATGGAGGAGGAGTGGGGT 59.996 63.158 0.00 0.00 0.00 4.95
1052 1081 1.768077 GGATGGAGGAGGAGTGGGG 60.768 68.421 0.00 0.00 0.00 4.96
1054 1083 1.768077 GGGGATGGAGGAGGAGTGG 60.768 68.421 0.00 0.00 0.00 4.00
1056 1085 2.283809 CGGGGATGGAGGAGGAGT 59.716 66.667 0.00 0.00 0.00 3.85
1057 1086 3.237741 GCGGGGATGGAGGAGGAG 61.238 72.222 0.00 0.00 0.00 3.69
1136 1165 0.618968 GACTCTGTGGATGGAGGGGT 60.619 60.000 0.00 0.00 34.22 4.95
1140 1169 0.177604 GGCTGACTCTGTGGATGGAG 59.822 60.000 0.00 0.00 35.86 3.86
1144 1173 3.023949 GCGGGCTGACTCTGTGGAT 62.024 63.158 0.00 0.00 0.00 3.41
1270 1300 1.343142 GCACAAGAAAACCGGGGAAAT 59.657 47.619 6.32 0.00 0.00 2.17
1458 1488 7.010923 GTGAAAGAAATTACCACATTGTGCAAA 59.989 33.333 11.41 7.73 31.34 3.68
1470 1505 5.585047 ACGGCTCTATGTGAAAGAAATTACC 59.415 40.000 0.00 0.00 0.00 2.85
1508 1543 7.358066 CAATAAAGGTCAGAATCGATGATTGG 58.642 38.462 0.00 0.00 31.89 3.16
1557 1592 2.812358 ACATTTTTCCCCAAAGTCGC 57.188 45.000 0.00 0.00 0.00 5.19
1561 1596 9.942850 AAATATTCAGTACATTTTTCCCCAAAG 57.057 29.630 0.00 0.00 0.00 2.77
1634 1672 8.234136 TCGCTACTTCTTCTAGGATTAATTGA 57.766 34.615 0.00 0.00 0.00 2.57
1636 1674 8.643324 ACATCGCTACTTCTTCTAGGATTAATT 58.357 33.333 0.00 0.00 0.00 1.40
1728 2964 0.247854 GAATCTTCTCCTTTGCGCGC 60.248 55.000 27.26 27.26 0.00 6.86
1845 3140 6.507023 CCATTTTCACTGCCTAAATATGGAC 58.493 40.000 0.00 0.00 31.76 4.02
1872 3167 9.243105 AGTATACAACATAAGCCACAAGATTTT 57.757 29.630 5.50 0.00 0.00 1.82
1960 3256 3.274288 GGTTTGGCAGATAGAGTTCAGG 58.726 50.000 0.00 0.00 0.00 3.86
1975 3271 8.994429 TGTAATTTGTAGCAAATATGGTTTGG 57.006 30.769 7.41 0.00 38.46 3.28
2034 3330 7.737869 TCCTTGGGCAGTATCGTATAATAAAA 58.262 34.615 0.00 0.00 0.00 1.52
2042 3338 2.835764 AGTTTCCTTGGGCAGTATCGTA 59.164 45.455 0.00 0.00 0.00 3.43
2072 3368 2.016318 TCCAGTTGCCTGCATAAATCG 58.984 47.619 0.00 0.00 37.38 3.34
2234 3530 4.008330 AGAACCAATGCACATCAGAGAAG 58.992 43.478 0.00 0.00 0.00 2.85
2442 3738 1.878088 CTGATGGATGATGGCCTTTCG 59.122 52.381 3.32 0.00 0.00 3.46
2466 3762 3.219281 ACGGTCACCATTTGTTTTAGCT 58.781 40.909 0.00 0.00 0.00 3.32
2484 3780 0.728542 GTGCAAACGGGGTAATACGG 59.271 55.000 0.00 0.00 0.00 4.02
2496 3792 9.983431 GTAAATTTATTTACTCGTTGTGCAAAC 57.017 29.630 14.95 0.00 45.28 2.93
2560 3856 4.326826 TCAACCTCATCTTTACTTGGCAG 58.673 43.478 0.00 0.00 0.00 4.85
2615 3911 4.733523 GCAAGGTACACTTTTGACTTGGTG 60.734 45.833 0.00 0.00 37.29 4.17
2628 3924 2.853281 GCGTTGAACTTGCAAGGTACAC 60.853 50.000 29.18 20.60 36.37 2.90
2787 4083 4.593956 ACAATCTTCCTGACCTTCCAATC 58.406 43.478 0.00 0.00 0.00 2.67
2801 4097 4.301628 CCCAGTTGCAGAAAACAATCTTC 58.698 43.478 0.00 0.00 32.21 2.87
2828 4124 0.330604 AGCATCTGCAGGTTGTCCAT 59.669 50.000 15.13 0.00 45.16 3.41
2874 4170 6.495181 AGTTCACTCAGGAAAGTTCAGATAGA 59.505 38.462 0.00 0.00 0.00 1.98
3062 4361 8.388103 CCTAAAGAAACAACATAATAGTGACCG 58.612 37.037 0.00 0.00 0.00 4.79
3250 4550 6.210584 CCTTCAATACCCACAACCTGTTATTT 59.789 38.462 0.00 0.00 0.00 1.40
3349 4649 3.490761 GCTTGTTTCTTAGCACAAGGCAA 60.491 43.478 19.00 8.16 46.79 4.52
3455 4755 4.685169 AATCAAACAGGTATTGCACTCG 57.315 40.909 0.00 0.00 0.00 4.18
3484 4784 1.737838 TGGCTAGCATGTAACAGTGC 58.262 50.000 18.24 0.00 41.57 4.40
3485 4785 5.586243 AGTTTATGGCTAGCATGTAACAGTG 59.414 40.000 18.24 0.00 0.00 3.66
3487 4787 5.817296 TCAGTTTATGGCTAGCATGTAACAG 59.183 40.000 18.24 11.54 0.00 3.16
3663 4963 2.544069 GCCTACCGTTCTGCTAGTCATC 60.544 54.545 0.00 0.00 0.00 2.92
3789 5089 7.432350 TTTTTCATGCATGGGTACATTTTTC 57.568 32.000 25.97 0.00 34.35 2.29
3838 5139 3.063452 ACGCGAACCAAACAGCATATTAG 59.937 43.478 15.93 0.00 0.00 1.73
3844 5145 2.539338 GGACGCGAACCAAACAGCA 61.539 57.895 15.93 0.00 0.00 4.41
3958 5259 1.481772 AGTGCATGTTTGGTTGCTGTT 59.518 42.857 0.00 0.00 39.60 3.16
4037 5339 5.067954 TGTAGCTAAGTTTGGTCCTTTTCC 58.932 41.667 0.00 0.00 0.00 3.13
4118 5422 8.867935 CAACCTTCTTTATCTATCTATGCATCG 58.132 37.037 0.19 0.00 0.00 3.84
4145 5451 3.608432 GCCCATTTCAGGCCTGTC 58.392 61.111 31.58 9.89 45.16 3.51
4206 5512 4.279145 GTCACCCCTACTAACAGAGATCA 58.721 47.826 0.00 0.00 0.00 2.92
4213 5519 2.039348 GCTTTGGTCACCCCTACTAACA 59.961 50.000 0.00 0.00 0.00 2.41
4235 5541 0.836606 TGGGTGACTGCAGTTTCTCA 59.163 50.000 22.65 19.25 0.00 3.27
4301 5609 1.006758 ACAGACACTCGGGGAGGAATA 59.993 52.381 0.00 0.00 33.35 1.75
4319 5627 0.322456 ATTTCTGCTTGCCGGCTACA 60.322 50.000 29.70 20.90 0.00 2.74
4344 5652 0.830648 CTCCAGTAATGGAAGCCCGA 59.169 55.000 13.78 0.00 37.55 5.14
4345 5653 0.830648 TCTCCAGTAATGGAAGCCCG 59.169 55.000 13.78 1.09 37.55 6.13
4420 5728 4.019860 AGGTGTTCAGAGCATTGTCAGTAT 60.020 41.667 0.00 0.00 0.00 2.12
4430 5738 0.319555 GCGTACAGGTGTTCAGAGCA 60.320 55.000 0.00 0.00 0.00 4.26
4472 5780 8.045720 ACCTAAGATGTTGGTATGGAATGTAT 57.954 34.615 0.00 0.00 31.50 2.29
4482 5790 7.975616 GTGTTATACGAACCTAAGATGTTGGTA 59.024 37.037 0.00 0.00 39.89 3.25
4540 5848 1.768684 GCCAAGGTCTGACCACCTCA 61.769 60.000 27.48 0.00 46.97 3.86
4620 5928 6.494491 AGAAACATCAGGAATTCAAACATGGA 59.506 34.615 7.93 0.00 0.00 3.41
4621 5929 6.694447 AGAAACATCAGGAATTCAAACATGG 58.306 36.000 7.93 0.00 0.00 3.66
4634 5942 5.551233 TGACCTGTAAGAAGAAACATCAGG 58.449 41.667 0.00 0.00 44.23 3.86
4731 6039 1.312371 GCAATTGGGGCTGCTTACGA 61.312 55.000 7.72 0.00 35.62 3.43
5057 6366 2.156117 TGGAACAAGAATTACGCGAACG 59.844 45.455 15.93 0.00 40.33 3.95
5096 6405 0.608035 GGGGGAAAACAGCGTCATGA 60.608 55.000 0.00 0.00 0.00 3.07
5265 6574 7.232534 CAGACTCTAGCTTAGACAATCCCTAAT 59.767 40.741 0.00 0.00 0.00 1.73
5286 6595 6.594159 GGTGCAGTTACACATATTAACAGACT 59.406 38.462 0.00 0.00 42.55 3.24
5288 6597 6.468543 TGGTGCAGTTACACATATTAACAGA 58.531 36.000 0.00 0.00 42.55 3.41
5312 6621 5.688807 AGAAGGCACACATAGATAAAGCAT 58.311 37.500 0.00 0.00 0.00 3.79
5325 6635 3.500680 TCAATCGGTAAAAGAAGGCACAC 59.499 43.478 0.00 0.00 0.00 3.82
5342 6652 6.039047 AGCAAATACAGATGTGTGGATCAATC 59.961 38.462 5.61 0.00 37.52 2.67
5345 6655 4.847198 AGCAAATACAGATGTGTGGATCA 58.153 39.130 5.61 0.00 37.52 2.92
5387 6697 8.317891 TCATTAGAGTTCTTCGCAATAAACAA 57.682 30.769 0.00 0.00 0.00 2.83
5452 6762 5.523552 TGTGTGATATCTTCAGGTAAATGCG 59.476 40.000 3.98 0.00 34.17 4.73
5556 6866 8.331022 CAGACAAGTAATCTGCATAATGTACAC 58.669 37.037 0.00 0.00 37.38 2.90
5557 6867 8.040727 ACAGACAAGTAATCTGCATAATGTACA 58.959 33.333 0.00 0.00 46.33 2.90
5558 6868 8.425577 ACAGACAAGTAATCTGCATAATGTAC 57.574 34.615 1.95 0.00 46.33 2.90
5622 6932 7.812191 TCACATTAATTCTTTCGTCCAATTTGG 59.188 33.333 9.28 9.28 39.43 3.28
5642 6952 4.529897 ACTGTATGCATGTCCATCACATT 58.470 39.130 10.16 0.00 43.89 2.71
5655 6965 3.317430 TGTGCAACATCAAACTGTATGCA 59.683 39.130 0.00 0.00 45.67 3.96
5673 6983 3.319755 AGCTTGCATAATTGTGTTGTGC 58.680 40.909 4.00 3.05 37.11 4.57
5864 7502 2.348472 TGGGGAATTCACTCTTCCTGT 58.652 47.619 7.81 0.00 41.62 4.00
5887 7525 3.077359 GCTGAGTTCACAAAGTAGGCAT 58.923 45.455 0.00 0.00 0.00 4.40
5888 7526 2.104792 AGCTGAGTTCACAAAGTAGGCA 59.895 45.455 0.00 0.00 0.00 4.75
6037 7676 3.213206 TCATCACCACTCAGCTGTTTT 57.787 42.857 14.67 0.00 0.00 2.43
6088 7727 1.145945 AGTCTCCCGATCCTATCTGCA 59.854 52.381 0.00 0.00 0.00 4.41
6182 7821 8.506437 TGCATAAGAATTCAGAACTACAAACAG 58.494 33.333 8.44 0.00 0.00 3.16
6205 7844 2.878406 GCTGTAAGAAGTGGACTTTGCA 59.122 45.455 0.00 0.00 36.11 4.08
6210 7849 4.705991 GGTAGTAGCTGTAAGAAGTGGACT 59.294 45.833 0.00 0.00 34.07 3.85
6213 7852 4.024670 AGGGTAGTAGCTGTAAGAAGTGG 58.975 47.826 0.00 0.00 34.07 4.00
6215 7854 4.951094 CAGAGGGTAGTAGCTGTAAGAAGT 59.049 45.833 0.00 0.00 34.07 3.01
6217 7856 4.931914 ACAGAGGGTAGTAGCTGTAAGAA 58.068 43.478 0.00 0.00 39.61 2.52
6404 8043 6.762661 ACAACATGAAAAATCAAACTCCCTTG 59.237 34.615 0.00 0.00 0.00 3.61
6405 8044 6.888105 ACAACATGAAAAATCAAACTCCCTT 58.112 32.000 0.00 0.00 0.00 3.95
6446 8133 2.199236 GTGTCTTCGTTCACGGAAAGT 58.801 47.619 0.00 0.00 40.29 2.66
6500 8187 3.771577 ATACCTTTTGATAGCCTCCCG 57.228 47.619 0.00 0.00 0.00 5.14
6597 8289 7.444299 TGATAAACTACAACCTCGTACCTTTT 58.556 34.615 0.00 0.00 0.00 2.27
6740 8437 5.573337 ATCCTGCAAAGTGAGAATAAAGC 57.427 39.130 0.00 0.00 0.00 3.51
6807 8507 7.484975 ACAGAACTGATGTACTTCATACTAGC 58.515 38.462 11.50 0.68 36.83 3.42
6977 11610 6.126409 TGTCAAATTCCCCAATATGGACTAC 58.874 40.000 0.00 0.00 40.96 2.73
6978 11611 6.334378 TGTCAAATTCCCCAATATGGACTA 57.666 37.500 0.00 0.00 40.96 2.59
6999 11638 4.090761 TGAAATGGAGAACTGAAGCTGT 57.909 40.909 0.00 0.00 0.00 4.40
7091 11812 3.614399 GCCACTTGCTGACTACTGT 57.386 52.632 0.00 0.00 36.87 3.55
7145 11866 3.058160 GCAGCAACGGCACCAGAT 61.058 61.111 0.00 0.00 44.61 2.90
7155 11877 1.607467 ACCAATGGAGGGCAGCAAC 60.607 57.895 6.16 0.00 0.00 4.17
7179 11901 0.800300 AACAAAACAAGCACACGCCG 60.800 50.000 0.00 0.00 39.83 6.46
7204 11939 5.336055 CGGGCATAACACCATAGAAACAAAA 60.336 40.000 0.00 0.00 0.00 2.44
7250 11993 2.034104 TCTGAAGATGCTGCACCATC 57.966 50.000 13.21 13.21 41.47 3.51
7251 11994 2.298610 CATCTGAAGATGCTGCACCAT 58.701 47.619 3.57 0.00 44.44 3.55
7346 12092 4.358214 TCCAAAAGGAAAAACCCAGACTT 58.642 39.130 0.00 0.00 40.05 3.01
7347 12093 3.989056 TCCAAAAGGAAAAACCCAGACT 58.011 40.909 0.00 0.00 40.05 3.24
7348 12094 4.955811 ATCCAAAAGGAAAAACCCAGAC 57.044 40.909 0.00 0.00 40.05 3.51
7349 12095 5.426833 TCAAATCCAAAAGGAAAAACCCAGA 59.573 36.000 0.00 0.00 40.05 3.86
7350 12096 5.679601 TCAAATCCAAAAGGAAAAACCCAG 58.320 37.500 0.00 0.00 40.05 4.45
7351 12097 5.700402 TCAAATCCAAAAGGAAAAACCCA 57.300 34.783 0.00 0.00 40.05 4.51
7352 12098 8.321353 AGATATCAAATCCAAAAGGAAAAACCC 58.679 33.333 5.32 0.00 40.05 4.11
7353 12099 9.725019 AAGATATCAAATCCAAAAGGAAAAACC 57.275 29.630 5.32 0.00 39.35 3.27
7356 12102 9.099071 TGGAAGATATCAAATCCAAAAGGAAAA 57.901 29.630 17.63 0.00 38.95 2.29
7357 12103 8.663209 TGGAAGATATCAAATCCAAAAGGAAA 57.337 30.769 17.63 0.00 38.95 3.13
7380 12136 8.624776 CCTAAGACAAATTAGGCTCTTAAATGG 58.375 37.037 0.00 0.00 43.97 3.16
7415 12178 2.100989 ACCAGAGACGTTAGGATGACC 58.899 52.381 0.00 0.00 0.00 4.02
7433 12196 1.031235 GGTAGTTCCTCTCGCCTACC 58.969 60.000 0.00 0.00 41.79 3.18
7436 12199 1.115467 CATGGTAGTTCCTCTCGCCT 58.885 55.000 0.00 0.00 37.07 5.52
7437 12200 0.530870 GCATGGTAGTTCCTCTCGCC 60.531 60.000 0.00 0.00 37.07 5.54
7439 12202 2.093973 AGTTGCATGGTAGTTCCTCTCG 60.094 50.000 0.00 0.00 37.07 4.04
7440 12203 3.618690 AGTTGCATGGTAGTTCCTCTC 57.381 47.619 0.00 0.00 37.07 3.20
7441 12204 3.073062 ACAAGTTGCATGGTAGTTCCTCT 59.927 43.478 1.81 0.00 37.07 3.69
7475 12241 9.643693 CTAATATGATTAACAAATTGGGGATGC 57.356 33.333 0.00 0.00 0.00 3.91
7478 12244 9.142014 CCACTAATATGATTAACAAATTGGGGA 57.858 33.333 0.00 0.00 0.00 4.81
7479 12245 8.923270 ACCACTAATATGATTAACAAATTGGGG 58.077 33.333 0.00 0.00 0.00 4.96
7489 12350 9.688091 TTTACCAGCAACCACTAATATGATTAA 57.312 29.630 0.00 0.00 0.00 1.40
7497 12358 6.067217 AGATCTTTACCAGCAACCACTAAT 57.933 37.500 0.00 0.00 0.00 1.73
7505 12366 4.943705 GGTCATCAAGATCTTTACCAGCAA 59.056 41.667 4.86 0.00 0.00 3.91
7513 12374 2.026822 ACAGGCGGTCATCAAGATCTTT 60.027 45.455 4.86 0.00 0.00 2.52
7521 12382 1.746239 CATGCACAGGCGGTCATCA 60.746 57.895 0.00 0.00 45.35 3.07
7528 12389 2.476185 GCTACTTTTACATGCACAGGCG 60.476 50.000 0.00 0.00 45.35 5.52
7531 12392 4.032900 CGGTAGCTACTTTTACATGCACAG 59.967 45.833 22.74 0.00 0.00 3.66
7533 12394 3.930848 ACGGTAGCTACTTTTACATGCAC 59.069 43.478 22.74 1.44 0.00 4.57
7534 12395 3.930229 CACGGTAGCTACTTTTACATGCA 59.070 43.478 22.74 0.00 0.00 3.96
7547 12408 1.878953 CCTGTTGAAACACGGTAGCT 58.121 50.000 0.00 0.00 34.70 3.32
7548 12409 0.237498 GCCTGTTGAAACACGGTAGC 59.763 55.000 11.04 0.00 34.70 3.58
7549 12410 0.511221 CGCCTGTTGAAACACGGTAG 59.489 55.000 11.04 5.14 34.70 3.18
7550 12411 1.500512 GCGCCTGTTGAAACACGGTA 61.501 55.000 0.00 0.00 34.70 4.02
7551 12412 2.830285 GCGCCTGTTGAAACACGGT 61.830 57.895 0.00 0.00 34.70 4.83
7552 12413 2.051345 GCGCCTGTTGAAACACGG 60.051 61.111 0.00 7.47 34.70 4.94
7553 12414 0.998226 CATGCGCCTGTTGAAACACG 60.998 55.000 4.18 2.77 34.70 4.49
7554 12415 0.030638 ACATGCGCCTGTTGAAACAC 59.969 50.000 12.88 0.00 34.70 3.32
7555 12416 0.030504 CACATGCGCCTGTTGAAACA 59.969 50.000 16.07 0.00 37.37 2.83
7556 12417 1.277495 GCACATGCGCCTGTTGAAAC 61.277 55.000 16.07 0.25 0.00 2.78
7557 12418 1.007502 GCACATGCGCCTGTTGAAA 60.008 52.632 16.07 0.00 0.00 2.69
7558 12419 2.132517 CTGCACATGCGCCTGTTGAA 62.133 55.000 16.07 5.78 45.83 2.69
7559 12420 2.594013 TGCACATGCGCCTGTTGA 60.594 55.556 16.07 2.56 45.83 3.18
7560 12421 2.126618 CTGCACATGCGCCTGTTG 60.127 61.111 16.07 12.20 45.83 3.33
7561 12422 2.595463 ACTGCACATGCGCCTGTT 60.595 55.556 16.07 0.00 45.83 3.16
7562 12423 3.359523 CACTGCACATGCGCCTGT 61.360 61.111 12.88 12.88 45.83 4.00
7563 12424 4.771356 GCACTGCACATGCGCCTG 62.771 66.667 11.39 11.39 45.83 4.85
7567 12428 4.409218 GGTGGCACTGCACATGCG 62.409 66.667 18.45 0.00 44.37 4.73
7568 12429 4.060038 GGGTGGCACTGCACATGC 62.060 66.667 18.45 9.32 42.62 4.06
7575 12436 4.767255 GCGGAGAGGGTGGCACTG 62.767 72.222 18.45 0.00 0.00 3.66
7595 12456 1.131638 GATGGAGGGAGTACATGGCA 58.868 55.000 0.00 0.00 0.00 4.92
7599 12460 0.561184 TCCGGATGGAGGGAGTACAT 59.439 55.000 0.00 0.00 40.17 2.29
7608 12469 4.688597 TGGGACAAATAATTCCGGATGGAG 60.689 45.833 4.15 0.00 40.46 3.86
7609 12470 3.203263 TGGGACAAATAATTCCGGATGGA 59.797 43.478 4.15 0.00 37.91 3.41
7610 12471 3.561143 TGGGACAAATAATTCCGGATGG 58.439 45.455 4.15 0.00 31.92 3.51
7611 12472 3.569701 CCTGGGACAAATAATTCCGGATG 59.430 47.826 4.15 0.97 38.70 3.51
7612 12473 3.461831 TCCTGGGACAAATAATTCCGGAT 59.538 43.478 4.15 0.00 38.70 4.18
7613 12474 2.847449 TCCTGGGACAAATAATTCCGGA 59.153 45.455 0.00 0.00 38.70 5.14
7614 12475 3.290948 TCCTGGGACAAATAATTCCGG 57.709 47.619 0.00 0.00 38.70 5.14
7615 12476 4.037923 CCATTCCTGGGACAAATAATTCCG 59.962 45.833 0.00 0.00 38.70 4.30
7617 12478 6.324770 ACATCCATTCCTGGGACAAATAATTC 59.675 38.462 0.00 0.00 43.34 2.17
7618 12479 6.204555 ACATCCATTCCTGGGACAAATAATT 58.795 36.000 0.00 0.00 43.34 1.40
7619 12480 5.780731 ACATCCATTCCTGGGACAAATAAT 58.219 37.500 0.00 0.00 43.34 1.28
7620 12481 5.205517 ACATCCATTCCTGGGACAAATAA 57.794 39.130 0.00 0.00 43.34 1.40
7621 12482 4.879295 ACATCCATTCCTGGGACAAATA 57.121 40.909 0.00 0.00 43.34 1.40
7623 12484 4.478317 AGATACATCCATTCCTGGGACAAA 59.522 41.667 0.00 0.00 43.34 2.83
7624 12485 4.047166 AGATACATCCATTCCTGGGACAA 58.953 43.478 0.00 0.00 43.34 3.18
7627 12488 6.332635 ACATTTAGATACATCCATTCCTGGGA 59.667 38.462 0.00 0.00 43.34 4.37
7628 12489 6.546484 ACATTTAGATACATCCATTCCTGGG 58.454 40.000 0.00 0.00 43.34 4.45
7629 12490 9.745018 AATACATTTAGATACATCCATTCCTGG 57.255 33.333 0.00 0.00 44.64 4.45
7678 12539 8.762426 GGAAATACTTGTCGTAGAAATGGATAC 58.238 37.037 0.00 0.00 39.69 2.24
7679 12540 7.650504 CGGAAATACTTGTCGTAGAAATGGATA 59.349 37.037 0.00 0.00 39.69 2.59
7680 12541 6.479001 CGGAAATACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
7681 12542 5.808540 CGGAAATACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
7682 12543 5.006358 CCGGAAATACTTGTCGTAGAAATGG 59.994 44.000 0.00 0.00 39.69 3.16
7683 12544 5.808540 TCCGGAAATACTTGTCGTAGAAATG 59.191 40.000 0.00 0.00 39.69 2.32
7684 12545 5.809051 GTCCGGAAATACTTGTCGTAGAAAT 59.191 40.000 5.23 0.00 39.69 2.17
7685 12546 5.163513 GTCCGGAAATACTTGTCGTAGAAA 58.836 41.667 5.23 0.00 39.69 2.52
7686 12547 4.672542 CGTCCGGAAATACTTGTCGTAGAA 60.673 45.833 5.23 0.00 39.69 2.10
7687 12548 3.181507 CGTCCGGAAATACTTGTCGTAGA 60.182 47.826 5.23 0.00 0.00 2.59
7688 12549 3.103738 CGTCCGGAAATACTTGTCGTAG 58.896 50.000 5.23 0.00 0.00 3.51
7689 12550 2.159393 CCGTCCGGAAATACTTGTCGTA 60.159 50.000 5.23 0.00 37.50 3.43
7690 12551 1.403249 CCGTCCGGAAATACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
7691 12552 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
7692 12553 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
7693 12554 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
7694 12555 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
7695 12556 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
7696 12557 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
7697 12558 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
7698 12559 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
7699 12560 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
7700 12561 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
7701 12562 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
7702 12563 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
7703 12564 3.217743 GCTACTCCCTCCGTCCGG 61.218 72.222 0.00 0.00 0.00 5.14
7704 12565 2.124236 AGCTACTCCCTCCGTCCG 60.124 66.667 0.00 0.00 0.00 4.79
7705 12566 1.076923 TGAGCTACTCCCTCCGTCC 60.077 63.158 0.00 0.00 0.00 4.79
7706 12567 0.680280 TGTGAGCTACTCCCTCCGTC 60.680 60.000 0.00 0.00 0.00 4.79
7707 12568 0.681564 CTGTGAGCTACTCCCTCCGT 60.682 60.000 0.00 0.00 0.00 4.69
7708 12569 1.388065 CCTGTGAGCTACTCCCTCCG 61.388 65.000 0.00 0.00 0.00 4.63
7709 12570 1.681486 GCCTGTGAGCTACTCCCTCC 61.681 65.000 0.00 0.00 0.00 4.30
7710 12571 1.819905 GCCTGTGAGCTACTCCCTC 59.180 63.158 0.00 0.00 0.00 4.30
7711 12572 2.055042 CGCCTGTGAGCTACTCCCT 61.055 63.158 0.00 0.00 0.00 4.20
7712 12573 2.496817 CGCCTGTGAGCTACTCCC 59.503 66.667 0.00 0.00 0.00 4.30
7713 12574 2.286127 GACCGCCTGTGAGCTACTCC 62.286 65.000 0.00 0.00 0.00 3.85
7714 12575 1.139947 GACCGCCTGTGAGCTACTC 59.860 63.158 0.00 0.00 0.00 2.59
7715 12576 1.606601 TGACCGCCTGTGAGCTACT 60.607 57.895 0.00 0.00 0.00 2.57
7716 12577 1.446272 GTGACCGCCTGTGAGCTAC 60.446 63.158 0.00 0.00 0.00 3.58
7717 12578 2.646175 GGTGACCGCCTGTGAGCTA 61.646 63.158 0.00 0.00 0.00 3.32
7718 12579 4.008933 GGTGACCGCCTGTGAGCT 62.009 66.667 0.00 0.00 0.00 4.09
7719 12580 3.941657 GAGGTGACCGCCTGTGAGC 62.942 68.421 6.88 0.00 39.34 4.26
7720 12581 2.262915 GAGGTGACCGCCTGTGAG 59.737 66.667 6.88 0.00 39.34 3.51
7721 12582 3.311110 GGAGGTGACCGCCTGTGA 61.311 66.667 17.74 0.00 40.42 3.58
7722 12583 3.596066 CTGGAGGTGACCGCCTGTG 62.596 68.421 24.79 11.40 44.04 3.66
7723 12584 3.314331 CTGGAGGTGACCGCCTGT 61.314 66.667 24.79 0.00 44.04 4.00
7724 12585 2.997315 TCTGGAGGTGACCGCCTG 60.997 66.667 24.79 23.36 44.04 4.85
7725 12586 2.681778 CTCTGGAGGTGACCGCCT 60.682 66.667 24.79 5.35 44.04 5.52
7726 12587 4.459089 GCTCTGGAGGTGACCGCC 62.459 72.222 18.18 18.18 43.97 6.13
7727 12588 3.386237 AGCTCTGGAGGTGACCGC 61.386 66.667 0.00 0.00 37.82 5.68
7747 12608 1.342819 GTTGAGTGGAGTGCAGAGACT 59.657 52.381 0.00 0.00 0.00 3.24
7753 12614 1.069090 GACGGTTGAGTGGAGTGCA 59.931 57.895 0.00 0.00 0.00 4.57
7765 12626 1.910580 ATTGGATGGAGGCGACGGTT 61.911 55.000 0.00 0.00 0.00 4.44
7821 12682 2.670148 GCTTGAGGGTCCCCGTCAT 61.670 63.158 3.51 0.00 45.83 3.06
7822 12683 3.319198 GCTTGAGGGTCCCCGTCA 61.319 66.667 3.51 0.00 45.06 4.35
7826 12687 4.048470 GTGGGCTTGAGGGTCCCC 62.048 72.222 3.51 0.00 39.30 4.81
7829 12690 2.352805 CCAGTGGGCTTGAGGGTC 59.647 66.667 0.00 0.00 0.00 4.46
7848 12709 2.296920 GGTGGACTATGACCAGCCA 58.703 57.895 0.00 0.00 46.25 4.75
7867 12728 0.400213 ATGGAGGACGGCAAAACAGA 59.600 50.000 0.00 0.00 0.00 3.41
7871 12732 0.984230 AGAGATGGAGGACGGCAAAA 59.016 50.000 0.00 0.00 0.00 2.44
7872 12733 0.250234 CAGAGATGGAGGACGGCAAA 59.750 55.000 0.00 0.00 0.00 3.68
7939 12800 1.611491 GCTGAGCGCTACTCTATCCTT 59.389 52.381 11.50 0.00 46.41 3.36
8025 12886 4.761235 TCGTGGTTTACTCACACTCTAG 57.239 45.455 0.00 0.00 35.03 2.43
8033 12894 4.462834 AGATGTCTGATCGTGGTTTACTCA 59.537 41.667 0.00 0.00 0.00 3.41
8082 12943 5.412617 TTGGGTAGGAGTGATAGGTATCA 57.587 43.478 0.00 0.00 40.19 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.