Multiple sequence alignment - TraesCS7D01G441500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G441500 chr7D 100.000 3284 0 0 1 3284 560891427 560894710 0.000000e+00 6065.0
1 TraesCS7D01G441500 chr7D 91.635 1315 75 6 1301 2612 560982799 560984081 0.000000e+00 1786.0
2 TraesCS7D01G441500 chr7D 98.875 622 6 1 2663 3284 73224265 73224885 0.000000e+00 1109.0
3 TraesCS7D01G441500 chr7D 85.741 526 31 15 729 1226 560982288 560982797 1.750000e-142 516.0
4 TraesCS7D01G441500 chr7D 85.112 403 43 4 1129 1526 560984074 560984464 2.370000e-106 396.0
5 TraesCS7D01G441500 chr7D 84.900 351 42 7 387 732 560981882 560982226 8.720000e-91 344.0
6 TraesCS7D01G441500 chr7D 86.477 281 28 6 2352 2631 560985967 560986238 1.920000e-77 300.0
7 TraesCS7D01G441500 chr7D 90.556 180 13 3 3 180 560959063 560959240 5.480000e-58 235.0
8 TraesCS7D01G441500 chr7D 94.545 55 3 0 795 849 560989976 560989922 5.840000e-13 86.1
9 TraesCS7D01G441500 chr7A 94.031 1558 60 13 739 2272 645038342 645039890 0.000000e+00 2331.0
10 TraesCS7D01G441500 chr7A 82.873 181 9 4 387 566 645038172 645038331 3.420000e-30 143.0
11 TraesCS7D01G441500 chr7B 92.691 1587 59 29 729 2272 608876783 608875211 0.000000e+00 2235.0
12 TraesCS7D01G441500 chr4B 90.252 1272 100 10 1019 2272 404123867 404125132 0.000000e+00 1640.0
13 TraesCS7D01G441500 chr4D 90.016 1272 103 10 1019 2272 323603088 323604353 0.000000e+00 1624.0
14 TraesCS7D01G441500 chr4D 78.248 1039 180 32 1244 2268 323583295 323582289 2.780000e-175 625.0
15 TraesCS7D01G441500 chr4A 87.994 1366 125 14 1019 2351 147653732 147652373 0.000000e+00 1578.0
16 TraesCS7D01G441500 chr4A 78.476 1050 182 32 1232 2268 148126618 148127636 0.000000e+00 647.0
17 TraesCS7D01G441500 chr5D 98.880 625 6 1 2660 3284 500845776 500846399 0.000000e+00 1114.0
18 TraesCS7D01G441500 chr2D 97.943 632 12 1 2653 3284 107104403 107105033 0.000000e+00 1094.0
19 TraesCS7D01G441500 chr2D 88.991 545 41 10 2748 3284 133725533 133725000 0.000000e+00 656.0
20 TraesCS7D01G441500 chr2D 88.742 453 31 9 2790 3233 136180737 136180296 1.340000e-148 536.0
21 TraesCS7D01G441500 chr2D 81.319 91 16 1 1 91 532567404 532567493 4.550000e-09 73.1
22 TraesCS7D01G441500 chr2B 92.698 630 32 12 2663 3284 776807919 776807296 0.000000e+00 896.0
23 TraesCS7D01G441500 chr2B 89.355 310 22 8 2984 3284 447737868 447737561 2.390000e-101 379.0
24 TraesCS7D01G441500 chr2B 97.143 35 0 1 2659 2693 766919555 766919588 1.270000e-04 58.4
25 TraesCS7D01G441500 chr2B 92.500 40 1 2 2653 2691 641691430 641691392 4.580000e-04 56.5
26 TraesCS7D01G441500 chr6D 88.742 453 31 7 2790 3233 129165741 129166182 1.340000e-148 536.0
27 TraesCS7D01G441500 chr3D 88.196 449 36 6 2791 3233 389113523 389113086 1.350000e-143 520.0
28 TraesCS7D01G441500 chr3D 88.710 62 7 0 4 65 455722309 455722370 3.510000e-10 76.8
29 TraesCS7D01G441500 chrUn 88.053 452 33 9 2790 3233 46038427 46037989 1.750000e-142 516.0
30 TraesCS7D01G441500 chrUn 87.302 63 8 0 1 63 210976209 210976271 4.550000e-09 73.1
31 TraesCS7D01G441500 chrUn 87.302 63 8 0 1 63 271275562 271275624 4.550000e-09 73.1
32 TraesCS7D01G441500 chrUn 87.302 63 8 0 1 63 310399719 310399657 4.550000e-09 73.1
33 TraesCS7D01G441500 chrUn 87.302 63 8 0 1 63 349125624 349125562 4.550000e-09 73.1
34 TraesCS7D01G441500 chrUn 87.302 63 8 0 1 63 357810411 357810349 4.550000e-09 73.1
35 TraesCS7D01G441500 chrUn 87.302 63 8 0 1 63 396078960 396079022 4.550000e-09 73.1
36 TraesCS7D01G441500 chr5B 78.325 203 22 13 2652 2835 105763242 105763043 9.630000e-21 111.0
37 TraesCS7D01G441500 chr1B 77.604 192 21 15 2663 2835 417276759 417276571 2.700000e-16 97.1
38 TraesCS7D01G441500 chr6B 90.698 43 4 0 2651 2693 697931828 697931870 1.270000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G441500 chr7D 560891427 560894710 3283 False 6065.0 6065 100.000 1 3284 1 chr7D.!!$F2 3283
1 TraesCS7D01G441500 chr7D 73224265 73224885 620 False 1109.0 1109 98.875 2663 3284 1 chr7D.!!$F1 621
2 TraesCS7D01G441500 chr7D 560981882 560986238 4356 False 668.4 1786 86.773 387 2631 5 chr7D.!!$F4 2244
3 TraesCS7D01G441500 chr7A 645038172 645039890 1718 False 1237.0 2331 88.452 387 2272 2 chr7A.!!$F1 1885
4 TraesCS7D01G441500 chr7B 608875211 608876783 1572 True 2235.0 2235 92.691 729 2272 1 chr7B.!!$R1 1543
5 TraesCS7D01G441500 chr4B 404123867 404125132 1265 False 1640.0 1640 90.252 1019 2272 1 chr4B.!!$F1 1253
6 TraesCS7D01G441500 chr4D 323603088 323604353 1265 False 1624.0 1624 90.016 1019 2272 1 chr4D.!!$F1 1253
7 TraesCS7D01G441500 chr4D 323582289 323583295 1006 True 625.0 625 78.248 1244 2268 1 chr4D.!!$R1 1024
8 TraesCS7D01G441500 chr4A 147652373 147653732 1359 True 1578.0 1578 87.994 1019 2351 1 chr4A.!!$R1 1332
9 TraesCS7D01G441500 chr4A 148126618 148127636 1018 False 647.0 647 78.476 1232 2268 1 chr4A.!!$F1 1036
10 TraesCS7D01G441500 chr5D 500845776 500846399 623 False 1114.0 1114 98.880 2660 3284 1 chr5D.!!$F1 624
11 TraesCS7D01G441500 chr2D 107104403 107105033 630 False 1094.0 1094 97.943 2653 3284 1 chr2D.!!$F1 631
12 TraesCS7D01G441500 chr2D 133725000 133725533 533 True 656.0 656 88.991 2748 3284 1 chr2D.!!$R1 536
13 TraesCS7D01G441500 chr2B 776807296 776807919 623 True 896.0 896 92.698 2663 3284 1 chr2B.!!$R3 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.037734 GGGACCGGTTGACAGGAATT 59.962 55.0 9.42 0.0 35.12 2.17 F
870 944 0.039256 CACCATCGCAACCAACCTTG 60.039 55.0 0.00 0.0 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 1930 1.680314 GAAGACCCTCCCGTACCGT 60.680 63.158 0.0 0.0 0.00 4.83 R
2292 2440 0.812549 ACGTTGACACCCAAACCAAC 59.187 50.000 0.0 0.0 36.36 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.822749 TCCTATAAGGATAATACCAATGCCA 57.177 36.000 0.00 0.00 40.06 4.92
37 38 7.630082 TCCTATAAGGATAATACCAATGCCAC 58.370 38.462 0.00 0.00 40.06 5.01
38 39 7.461043 TCCTATAAGGATAATACCAATGCCACT 59.539 37.037 0.00 0.00 40.06 4.00
39 40 8.768397 CCTATAAGGATAATACCAATGCCACTA 58.232 37.037 0.00 0.00 37.67 2.74
43 44 8.409358 AAGGATAATACCAATGCCACTAATTC 57.591 34.615 0.00 0.00 0.00 2.17
44 45 6.655003 AGGATAATACCAATGCCACTAATTCG 59.345 38.462 0.00 0.00 0.00 3.34
45 46 6.430000 GGATAATACCAATGCCACTAATTCGT 59.570 38.462 0.00 0.00 0.00 3.85
46 47 7.040686 GGATAATACCAATGCCACTAATTCGTT 60.041 37.037 0.00 0.00 0.00 3.85
47 48 5.751243 ATACCAATGCCACTAATTCGTTC 57.249 39.130 0.00 0.00 0.00 3.95
48 49 3.417101 ACCAATGCCACTAATTCGTTCA 58.583 40.909 0.00 0.00 0.00 3.18
49 50 4.016444 ACCAATGCCACTAATTCGTTCAT 58.984 39.130 0.00 0.00 0.00 2.57
50 51 4.462483 ACCAATGCCACTAATTCGTTCATT 59.538 37.500 3.10 3.10 0.00 2.57
51 52 5.036737 CCAATGCCACTAATTCGTTCATTC 58.963 41.667 5.08 0.00 0.00 2.67
52 53 5.163622 CCAATGCCACTAATTCGTTCATTCT 60.164 40.000 5.08 0.00 0.00 2.40
53 54 6.324819 CAATGCCACTAATTCGTTCATTCTT 58.675 36.000 5.08 0.00 0.00 2.52
54 55 7.415095 CCAATGCCACTAATTCGTTCATTCTTA 60.415 37.037 5.08 0.00 0.00 2.10
55 56 6.662414 TGCCACTAATTCGTTCATTCTTAG 57.338 37.500 0.00 0.00 0.00 2.18
56 57 6.403049 TGCCACTAATTCGTTCATTCTTAGA 58.597 36.000 0.00 0.00 0.00 2.10
57 58 6.876789 TGCCACTAATTCGTTCATTCTTAGAA 59.123 34.615 0.00 0.00 0.00 2.10
58 59 7.389330 TGCCACTAATTCGTTCATTCTTAGAAA 59.611 33.333 0.00 0.00 0.00 2.52
59 60 8.234546 GCCACTAATTCGTTCATTCTTAGAAAA 58.765 33.333 0.00 0.00 0.00 2.29
60 61 9.543018 CCACTAATTCGTTCATTCTTAGAAAAC 57.457 33.333 0.00 0.00 0.00 2.43
65 66 9.884465 AATTCGTTCATTCTTAGAAAACTTCAG 57.116 29.630 0.00 0.00 0.00 3.02
66 67 8.657074 TTCGTTCATTCTTAGAAAACTTCAGA 57.343 30.769 0.00 0.00 0.00 3.27
67 68 8.299262 TCGTTCATTCTTAGAAAACTTCAGAG 57.701 34.615 0.00 0.00 0.00 3.35
68 69 7.926555 TCGTTCATTCTTAGAAAACTTCAGAGT 59.073 33.333 0.00 0.00 37.87 3.24
72 73 9.193133 TCATTCTTAGAAAACTTCAGAGTTACG 57.807 33.333 0.00 0.00 45.18 3.18
73 74 9.193133 CATTCTTAGAAAACTTCAGAGTTACGA 57.807 33.333 0.00 0.00 45.18 3.43
74 75 9.760077 ATTCTTAGAAAACTTCAGAGTTACGAA 57.240 29.630 0.00 0.00 45.18 3.85
75 76 9.590451 TTCTTAGAAAACTTCAGAGTTACGAAA 57.410 29.630 0.00 0.00 45.18 3.46
76 77 9.590451 TCTTAGAAAACTTCAGAGTTACGAAAA 57.410 29.630 0.00 0.00 45.18 2.29
77 78 9.634300 CTTAGAAAACTTCAGAGTTACGAAAAC 57.366 33.333 0.00 0.00 45.18 2.43
78 79 7.845066 AGAAAACTTCAGAGTTACGAAAACT 57.155 32.000 7.48 7.48 45.18 2.66
79 80 7.907194 AGAAAACTTCAGAGTTACGAAAACTC 58.093 34.615 20.48 20.48 45.18 3.01
80 81 6.600246 AAACTTCAGAGTTACGAAAACTCC 57.400 37.500 22.81 11.47 45.18 3.85
81 82 5.272283 ACTTCAGAGTTACGAAAACTCCA 57.728 39.130 22.81 12.85 45.82 3.86
82 83 5.048507 ACTTCAGAGTTACGAAAACTCCAC 58.951 41.667 22.81 7.67 45.82 4.02
83 84 4.931661 TCAGAGTTACGAAAACTCCACT 57.068 40.909 22.81 9.48 45.82 4.00
84 85 6.040166 ACTTCAGAGTTACGAAAACTCCACTA 59.960 38.462 22.81 11.34 45.82 2.74
85 86 6.585695 TCAGAGTTACGAAAACTCCACTAT 57.414 37.500 22.81 8.95 45.82 2.12
86 87 6.989659 TCAGAGTTACGAAAACTCCACTATT 58.010 36.000 22.81 8.43 45.82 1.73
87 88 8.114331 TCAGAGTTACGAAAACTCCACTATTA 57.886 34.615 22.81 6.73 45.82 0.98
88 89 8.746530 TCAGAGTTACGAAAACTCCACTATTAT 58.253 33.333 22.81 7.39 45.82 1.28
125 126 6.564709 GGTTTCCTACCTAATTTTTGACGT 57.435 37.500 0.00 0.00 44.10 4.34
126 127 6.973843 GGTTTCCTACCTAATTTTTGACGTT 58.026 36.000 0.00 0.00 44.10 3.99
127 128 7.428020 GGTTTCCTACCTAATTTTTGACGTTT 58.572 34.615 0.00 0.00 44.10 3.60
128 129 8.567104 GGTTTCCTACCTAATTTTTGACGTTTA 58.433 33.333 0.00 0.00 44.10 2.01
129 130 9.603298 GTTTCCTACCTAATTTTTGACGTTTAG 57.397 33.333 0.00 0.00 0.00 1.85
130 131 7.910441 TCCTACCTAATTTTTGACGTTTAGG 57.090 36.000 16.42 16.42 44.09 2.69
131 132 7.678837 TCCTACCTAATTTTTGACGTTTAGGA 58.321 34.615 22.33 4.95 42.10 2.94
132 133 8.323567 TCCTACCTAATTTTTGACGTTTAGGAT 58.676 33.333 22.33 12.26 42.10 3.24
133 134 8.395633 CCTACCTAATTTTTGACGTTTAGGATG 58.604 37.037 22.33 15.11 42.10 3.51
134 135 7.754851 ACCTAATTTTTGACGTTTAGGATGT 57.245 32.000 22.33 3.70 42.10 3.06
135 136 7.813645 ACCTAATTTTTGACGTTTAGGATGTC 58.186 34.615 22.33 0.00 42.10 3.06
142 143 5.654603 TGACGTTTAGGATGTCATACACT 57.345 39.130 0.00 0.00 46.65 3.55
143 144 6.762702 TGACGTTTAGGATGTCATACACTA 57.237 37.500 0.00 0.00 46.65 2.74
144 145 6.558009 TGACGTTTAGGATGTCATACACTAC 58.442 40.000 0.00 0.00 46.65 2.73
145 146 5.899299 ACGTTTAGGATGTCATACACTACC 58.101 41.667 0.00 0.00 0.00 3.18
146 147 5.419788 ACGTTTAGGATGTCATACACTACCA 59.580 40.000 0.00 0.00 0.00 3.25
147 148 5.747197 CGTTTAGGATGTCATACACTACCAC 59.253 44.000 0.00 0.00 0.00 4.16
148 149 6.626402 CGTTTAGGATGTCATACACTACCACA 60.626 42.308 0.00 0.00 0.00 4.17
149 150 7.272978 GTTTAGGATGTCATACACTACCACAT 58.727 38.462 0.00 0.00 0.00 3.21
150 151 5.957771 AGGATGTCATACACTACCACATT 57.042 39.130 0.00 0.00 0.00 2.71
151 152 5.918608 AGGATGTCATACACTACCACATTC 58.081 41.667 0.00 0.00 0.00 2.67
152 153 5.425217 AGGATGTCATACACTACCACATTCA 59.575 40.000 0.00 0.00 0.00 2.57
153 154 5.523916 GGATGTCATACACTACCACATTCAC 59.476 44.000 0.00 0.00 0.00 3.18
154 155 4.827692 TGTCATACACTACCACATTCACC 58.172 43.478 0.00 0.00 0.00 4.02
155 156 4.530553 TGTCATACACTACCACATTCACCT 59.469 41.667 0.00 0.00 0.00 4.00
156 157 5.717654 TGTCATACACTACCACATTCACCTA 59.282 40.000 0.00 0.00 0.00 3.08
157 158 6.127451 TGTCATACACTACCACATTCACCTAG 60.127 42.308 0.00 0.00 0.00 3.02
158 159 5.362717 TCATACACTACCACATTCACCTAGG 59.637 44.000 7.41 7.41 0.00 3.02
159 160 3.517612 ACACTACCACATTCACCTAGGT 58.482 45.455 9.21 9.21 36.40 3.08
160 161 4.680407 ACACTACCACATTCACCTAGGTA 58.320 43.478 15.80 0.00 33.91 3.08
161 162 5.278061 ACACTACCACATTCACCTAGGTAT 58.722 41.667 15.80 2.12 34.59 2.73
162 163 5.128827 ACACTACCACATTCACCTAGGTATG 59.871 44.000 15.80 17.89 34.59 2.39
163 164 4.654262 ACTACCACATTCACCTAGGTATGG 59.346 45.833 22.95 21.06 34.59 2.74
164 165 2.777692 ACCACATTCACCTAGGTATGGG 59.222 50.000 22.95 20.17 0.00 4.00
165 166 3.045634 CCACATTCACCTAGGTATGGGA 58.954 50.000 23.37 11.33 0.00 4.37
166 167 3.181454 CCACATTCACCTAGGTATGGGAC 60.181 52.174 23.37 0.00 0.00 4.46
174 175 4.948257 GGTATGGGACCGGTTGAC 57.052 61.111 9.42 2.38 38.87 3.18
175 176 1.984817 GGTATGGGACCGGTTGACA 59.015 57.895 9.42 9.08 38.87 3.58
176 177 0.107848 GGTATGGGACCGGTTGACAG 60.108 60.000 9.42 0.00 38.87 3.51
177 178 0.107848 GTATGGGACCGGTTGACAGG 60.108 60.000 9.42 0.00 37.23 4.00
178 179 0.252330 TATGGGACCGGTTGACAGGA 60.252 55.000 9.42 0.00 35.12 3.86
179 180 1.131303 ATGGGACCGGTTGACAGGAA 61.131 55.000 9.42 0.00 35.12 3.36
180 181 1.131303 TGGGACCGGTTGACAGGAAT 61.131 55.000 9.42 0.00 35.12 3.01
181 182 0.037734 GGGACCGGTTGACAGGAATT 59.962 55.000 9.42 0.00 35.12 2.17
182 183 1.165270 GGACCGGTTGACAGGAATTG 58.835 55.000 9.42 0.00 35.12 2.32
183 184 1.165270 GACCGGTTGACAGGAATTGG 58.835 55.000 9.42 0.00 35.12 3.16
184 185 0.893727 ACCGGTTGACAGGAATTGGC 60.894 55.000 0.00 0.00 35.12 4.52
185 186 0.893270 CCGGTTGACAGGAATTGGCA 60.893 55.000 0.00 0.00 45.27 4.92
189 190 2.639970 TGACAGGAATTGGCAACGG 58.360 52.632 0.00 0.00 43.52 4.44
190 191 1.212751 GACAGGAATTGGCAACGGC 59.787 57.895 0.00 0.00 42.51 5.68
239 240 8.764524 AGCATTATAGATAATTTCGAGTCCAC 57.235 34.615 0.00 0.00 30.91 4.02
240 241 8.367911 AGCATTATAGATAATTTCGAGTCCACA 58.632 33.333 0.00 0.00 30.91 4.17
241 242 9.155975 GCATTATAGATAATTTCGAGTCCACAT 57.844 33.333 0.00 0.00 30.91 3.21
247 248 8.594881 AGATAATTTCGAGTCCACATGATTAC 57.405 34.615 0.00 0.00 0.00 1.89
248 249 8.204160 AGATAATTTCGAGTCCACATGATTACA 58.796 33.333 0.00 0.00 0.00 2.41
249 250 6.422776 AATTTCGAGTCCACATGATTACAC 57.577 37.500 0.00 0.00 0.00 2.90
250 251 4.529109 TTCGAGTCCACATGATTACACA 57.471 40.909 0.00 0.00 0.00 3.72
251 252 4.529109 TCGAGTCCACATGATTACACAA 57.471 40.909 0.00 0.00 0.00 3.33
252 253 4.242475 TCGAGTCCACATGATTACACAAC 58.758 43.478 0.00 0.00 0.00 3.32
253 254 3.993736 CGAGTCCACATGATTACACAACA 59.006 43.478 0.00 0.00 0.00 3.33
254 255 4.143115 CGAGTCCACATGATTACACAACAC 60.143 45.833 0.00 0.00 0.00 3.32
255 256 4.072131 AGTCCACATGATTACACAACACC 58.928 43.478 0.00 0.00 0.00 4.16
256 257 4.072131 GTCCACATGATTACACAACACCT 58.928 43.478 0.00 0.00 0.00 4.00
257 258 4.518970 GTCCACATGATTACACAACACCTT 59.481 41.667 0.00 0.00 0.00 3.50
258 259 5.703592 GTCCACATGATTACACAACACCTTA 59.296 40.000 0.00 0.00 0.00 2.69
259 260 6.374333 GTCCACATGATTACACAACACCTTAT 59.626 38.462 0.00 0.00 0.00 1.73
260 261 6.945435 TCCACATGATTACACAACACCTTATT 59.055 34.615 0.00 0.00 0.00 1.40
261 262 7.450014 TCCACATGATTACACAACACCTTATTT 59.550 33.333 0.00 0.00 0.00 1.40
262 263 7.754924 CCACATGATTACACAACACCTTATTTC 59.245 37.037 0.00 0.00 0.00 2.17
263 264 8.514594 CACATGATTACACAACACCTTATTTCT 58.485 33.333 0.00 0.00 0.00 2.52
264 265 9.077885 ACATGATTACACAACACCTTATTTCTT 57.922 29.630 0.00 0.00 0.00 2.52
265 266 9.912634 CATGATTACACAACACCTTATTTCTTT 57.087 29.630 0.00 0.00 0.00 2.52
267 268 9.349713 TGATTACACAACACCTTATTTCTTTCT 57.650 29.630 0.00 0.00 0.00 2.52
269 270 9.965824 ATTACACAACACCTTATTTCTTTCTTG 57.034 29.630 0.00 0.00 0.00 3.02
270 271 7.404671 ACACAACACCTTATTTCTTTCTTGT 57.595 32.000 0.00 0.00 0.00 3.16
271 272 7.836842 ACACAACACCTTATTTCTTTCTTGTT 58.163 30.769 0.00 0.00 0.00 2.83
272 273 8.311109 ACACAACACCTTATTTCTTTCTTGTTT 58.689 29.630 0.00 0.00 0.00 2.83
273 274 9.150348 CACAACACCTTATTTCTTTCTTGTTTT 57.850 29.630 0.00 0.00 0.00 2.43
274 275 9.150348 ACAACACCTTATTTCTTTCTTGTTTTG 57.850 29.630 0.00 0.00 0.00 2.44
275 276 9.364989 CAACACCTTATTTCTTTCTTGTTTTGA 57.635 29.630 0.00 0.00 0.00 2.69
276 277 9.586435 AACACCTTATTTCTTTCTTGTTTTGAG 57.414 29.630 0.00 0.00 0.00 3.02
277 278 7.706607 ACACCTTATTTCTTTCTTGTTTTGAGC 59.293 33.333 0.00 0.00 0.00 4.26
278 279 7.169813 CACCTTATTTCTTTCTTGTTTTGAGCC 59.830 37.037 0.00 0.00 0.00 4.70
279 280 6.363357 CCTTATTTCTTTCTTGTTTTGAGCCG 59.637 38.462 0.00 0.00 0.00 5.52
280 281 3.708563 TTCTTTCTTGTTTTGAGCCGG 57.291 42.857 0.00 0.00 0.00 6.13
281 282 2.650322 TCTTTCTTGTTTTGAGCCGGT 58.350 42.857 1.90 0.00 0.00 5.28
282 283 3.020984 TCTTTCTTGTTTTGAGCCGGTT 58.979 40.909 1.90 0.00 0.00 4.44
283 284 3.445805 TCTTTCTTGTTTTGAGCCGGTTT 59.554 39.130 1.90 0.00 0.00 3.27
284 285 3.878160 TTCTTGTTTTGAGCCGGTTTT 57.122 38.095 1.90 0.00 0.00 2.43
285 286 3.878160 TCTTGTTTTGAGCCGGTTTTT 57.122 38.095 1.90 0.00 0.00 1.94
286 287 4.985538 TCTTGTTTTGAGCCGGTTTTTA 57.014 36.364 1.90 0.00 0.00 1.52
287 288 5.523438 TCTTGTTTTGAGCCGGTTTTTAT 57.477 34.783 1.90 0.00 0.00 1.40
288 289 5.525199 TCTTGTTTTGAGCCGGTTTTTATC 58.475 37.500 1.90 0.00 0.00 1.75
289 290 5.300792 TCTTGTTTTGAGCCGGTTTTTATCT 59.699 36.000 1.90 0.00 0.00 1.98
290 291 5.523438 TGTTTTGAGCCGGTTTTTATCTT 57.477 34.783 1.90 0.00 0.00 2.40
291 292 5.525199 TGTTTTGAGCCGGTTTTTATCTTC 58.475 37.500 1.90 0.00 0.00 2.87
292 293 4.776795 TTTGAGCCGGTTTTTATCTTCC 57.223 40.909 1.90 0.00 0.00 3.46
293 294 3.713826 TGAGCCGGTTTTTATCTTCCT 57.286 42.857 1.90 0.00 0.00 3.36
294 295 4.028993 TGAGCCGGTTTTTATCTTCCTT 57.971 40.909 1.90 0.00 0.00 3.36
295 296 4.403734 TGAGCCGGTTTTTATCTTCCTTT 58.596 39.130 1.90 0.00 0.00 3.11
296 297 5.562635 TGAGCCGGTTTTTATCTTCCTTTA 58.437 37.500 1.90 0.00 0.00 1.85
297 298 6.184789 TGAGCCGGTTTTTATCTTCCTTTAT 58.815 36.000 1.90 0.00 0.00 1.40
298 299 6.094881 TGAGCCGGTTTTTATCTTCCTTTATG 59.905 38.462 1.90 0.00 0.00 1.90
299 300 5.949952 AGCCGGTTTTTATCTTCCTTTATGT 59.050 36.000 1.90 0.00 0.00 2.29
300 301 6.033966 GCCGGTTTTTATCTTCCTTTATGTG 58.966 40.000 1.90 0.00 0.00 3.21
301 302 6.127842 GCCGGTTTTTATCTTCCTTTATGTGA 60.128 38.462 1.90 0.00 0.00 3.58
302 303 7.576098 GCCGGTTTTTATCTTCCTTTATGTGAA 60.576 37.037 1.90 0.00 0.00 3.18
303 304 8.466798 CCGGTTTTTATCTTCCTTTATGTGAAT 58.533 33.333 0.00 0.00 0.00 2.57
304 305 9.855021 CGGTTTTTATCTTCCTTTATGTGAATT 57.145 29.630 0.00 0.00 0.00 2.17
310 311 9.527157 TTATCTTCCTTTATGTGAATTGTTGGA 57.473 29.630 0.00 0.00 0.00 3.53
311 312 8.599624 ATCTTCCTTTATGTGAATTGTTGGAT 57.400 30.769 0.00 0.00 0.00 3.41
312 313 7.829725 TCTTCCTTTATGTGAATTGTTGGATG 58.170 34.615 0.00 0.00 0.00 3.51
313 314 5.964758 TCCTTTATGTGAATTGTTGGATGC 58.035 37.500 0.00 0.00 0.00 3.91
314 315 5.716228 TCCTTTATGTGAATTGTTGGATGCT 59.284 36.000 0.00 0.00 0.00 3.79
315 316 5.808540 CCTTTATGTGAATTGTTGGATGCTG 59.191 40.000 0.00 0.00 0.00 4.41
316 317 5.981088 TTATGTGAATTGTTGGATGCTGT 57.019 34.783 0.00 0.00 0.00 4.40
317 318 3.646611 TGTGAATTGTTGGATGCTGTG 57.353 42.857 0.00 0.00 0.00 3.66
318 319 2.957680 TGTGAATTGTTGGATGCTGTGT 59.042 40.909 0.00 0.00 0.00 3.72
319 320 3.243468 TGTGAATTGTTGGATGCTGTGTG 60.243 43.478 0.00 0.00 0.00 3.82
320 321 2.957680 TGAATTGTTGGATGCTGTGTGT 59.042 40.909 0.00 0.00 0.00 3.72
321 322 3.243468 TGAATTGTTGGATGCTGTGTGTG 60.243 43.478 0.00 0.00 0.00 3.82
322 323 1.761449 TTGTTGGATGCTGTGTGTGT 58.239 45.000 0.00 0.00 0.00 3.72
323 324 2.629336 TGTTGGATGCTGTGTGTGTA 57.371 45.000 0.00 0.00 0.00 2.90
324 325 2.924421 TGTTGGATGCTGTGTGTGTAA 58.076 42.857 0.00 0.00 0.00 2.41
325 326 2.877786 TGTTGGATGCTGTGTGTGTAAG 59.122 45.455 0.00 0.00 0.00 2.34
326 327 2.878406 GTTGGATGCTGTGTGTGTAAGT 59.122 45.455 0.00 0.00 0.00 2.24
327 328 2.493035 TGGATGCTGTGTGTGTAAGTG 58.507 47.619 0.00 0.00 0.00 3.16
328 329 2.158827 TGGATGCTGTGTGTGTAAGTGT 60.159 45.455 0.00 0.00 0.00 3.55
329 330 3.070302 TGGATGCTGTGTGTGTAAGTGTA 59.930 43.478 0.00 0.00 0.00 2.90
330 331 4.253685 GGATGCTGTGTGTGTAAGTGTAT 58.746 43.478 0.00 0.00 0.00 2.29
331 332 5.046950 TGGATGCTGTGTGTGTAAGTGTATA 60.047 40.000 0.00 0.00 0.00 1.47
332 333 5.291128 GGATGCTGTGTGTGTAAGTGTATAC 59.709 44.000 0.00 0.00 0.00 1.47
333 334 5.203060 TGCTGTGTGTGTAAGTGTATACA 57.797 39.130 0.08 0.08 33.52 2.29
334 335 5.789521 TGCTGTGTGTGTAAGTGTATACAT 58.210 37.500 9.18 0.00 38.03 2.29
335 336 6.926313 TGCTGTGTGTGTAAGTGTATACATA 58.074 36.000 9.18 0.00 38.03 2.29
336 337 6.809689 TGCTGTGTGTGTAAGTGTATACATAC 59.190 38.462 9.18 9.05 43.87 2.39
357 358 9.366216 ACATACAAGTACTGTACAATATGTGTG 57.634 33.333 25.02 24.43 43.35 3.82
358 359 9.366216 CATACAAGTACTGTACAATATGTGTGT 57.634 33.333 19.27 11.30 43.35 3.72
360 361 8.981724 ACAAGTACTGTACAATATGTGTGTAG 57.018 34.615 19.27 0.00 41.89 2.74
361 362 8.799367 ACAAGTACTGTACAATATGTGTGTAGA 58.201 33.333 19.27 0.00 41.89 2.59
362 363 9.803315 CAAGTACTGTACAATATGTGTGTAGAT 57.197 33.333 19.27 0.00 41.89 1.98
376 377 7.891498 TGTGTGTAGATTATACTAGAAGGCA 57.109 36.000 0.00 0.00 0.00 4.75
377 378 8.301252 TGTGTGTAGATTATACTAGAAGGCAA 57.699 34.615 0.00 0.00 0.00 4.52
378 379 8.755028 TGTGTGTAGATTATACTAGAAGGCAAA 58.245 33.333 0.00 0.00 0.00 3.68
379 380 9.595823 GTGTGTAGATTATACTAGAAGGCAAAA 57.404 33.333 0.00 0.00 0.00 2.44
477 478 8.877864 AAGAAAATATAGTGTTGGACAATGGA 57.122 30.769 0.00 0.00 0.00 3.41
560 562 6.568081 CGAACAAACCGTGGTAAATTCCATTA 60.568 38.462 0.00 0.00 39.81 1.90
623 625 8.798402 ACATCATGGCAAATTCATTTTTGAAAT 58.202 25.926 0.00 0.00 38.58 2.17
626 632 8.847196 TCATGGCAAATTCATTTTTGAAATCAA 58.153 25.926 0.00 0.00 38.58 2.57
631 637 9.887406 GCAAATTCATTTTTGAAATCAAGACAT 57.113 25.926 1.33 0.00 38.58 3.06
683 689 6.734137 TCGCAATGTTTCTTTTGTCAGTATT 58.266 32.000 0.00 0.00 0.00 1.89
687 693 9.636965 GCAATGTTTCTTTTGTCAGTATTTTTC 57.363 29.630 0.00 0.00 0.00 2.29
700 706 8.149647 TGTCAGTATTTTTCTGCCATCATTTTT 58.850 29.630 0.00 0.00 33.48 1.94
703 709 9.090692 CAGTATTTTTCTGCCATCATTTTTAGG 57.909 33.333 0.00 0.00 0.00 2.69
716 722 4.774726 TCATTTTTAGGCCATGGCAACTTA 59.225 37.500 36.56 19.86 44.11 2.24
782 856 2.802719 GAGGGTGGAAGTTGGCAAATA 58.197 47.619 0.00 0.00 0.00 1.40
806 880 1.226746 AACGGTTGCTTTTCCTCTCG 58.773 50.000 0.00 0.00 0.00 4.04
868 942 1.603455 CCACCATCGCAACCAACCT 60.603 57.895 0.00 0.00 0.00 3.50
869 943 1.178534 CCACCATCGCAACCAACCTT 61.179 55.000 0.00 0.00 0.00 3.50
870 944 0.039256 CACCATCGCAACCAACCTTG 60.039 55.000 0.00 0.00 0.00 3.61
871 945 1.080569 CCATCGCAACCAACCTTGC 60.081 57.895 0.00 0.00 42.73 4.01
930 1012 1.748493 CCATTAATTCCCCACGGTGTG 59.252 52.381 7.45 0.00 0.00 3.82
954 1045 2.829043 TAACAGGTGCAGCCGCGTAG 62.829 60.000 13.29 0.00 42.97 3.51
958 1049 2.125832 GTGCAGCCGCGTAGGTTA 60.126 61.111 4.92 0.00 42.97 2.85
959 1050 2.165301 GTGCAGCCGCGTAGGTTAG 61.165 63.158 4.92 0.00 42.97 2.34
995 1086 2.492090 CCTCTTCCGTCCTCAGCG 59.508 66.667 0.00 0.00 0.00 5.18
2292 2440 2.760374 GGCATCAACTAGATCCTTCGG 58.240 52.381 0.00 0.00 33.72 4.30
2323 2471 1.374125 TCAACGTGCAGACATCGGG 60.374 57.895 0.00 0.00 0.00 5.14
2352 2500 3.192466 ACACGTCCTGTTTTACACACTC 58.808 45.455 0.00 0.00 0.00 3.51
2355 2503 3.131577 ACGTCCTGTTTTACACACTCTGA 59.868 43.478 0.00 0.00 0.00 3.27
2360 2508 7.117812 CGTCCTGTTTTACACACTCTGAATATT 59.882 37.037 0.00 0.00 0.00 1.28
2371 2519 7.819900 ACACACTCTGAATATTTAGGTCAACTC 59.180 37.037 7.34 0.00 0.00 3.01
2372 2520 7.009631 CACACTCTGAATATTTAGGTCAACTCG 59.990 40.741 7.34 0.00 0.00 4.18
2373 2521 7.093902 ACACTCTGAATATTTAGGTCAACTCGA 60.094 37.037 7.34 0.00 0.00 4.04
2374 2522 7.923344 CACTCTGAATATTTAGGTCAACTCGAT 59.077 37.037 7.34 0.00 0.00 3.59
2375 2523 8.138712 ACTCTGAATATTTAGGTCAACTCGATC 58.861 37.037 7.34 0.00 0.00 3.69
2376 2524 7.434492 TCTGAATATTTAGGTCAACTCGATCC 58.566 38.462 7.34 0.00 0.00 3.36
2377 2525 6.213677 TGAATATTTAGGTCAACTCGATCCG 58.786 40.000 0.00 0.00 0.00 4.18
2378 2526 2.953466 TTTAGGTCAACTCGATCCGG 57.047 50.000 0.00 0.00 0.00 5.14
2379 2527 2.133281 TTAGGTCAACTCGATCCGGA 57.867 50.000 6.61 6.61 0.00 5.14
2391 2539 2.693074 TCGATCCGGATTGATGAGTTGA 59.307 45.455 27.62 6.77 0.00 3.18
2409 2557 6.017934 TGAGTTGAAATGAAAACGAAGAGAGG 60.018 38.462 0.00 0.00 0.00 3.69
2411 2559 4.133820 TGAAATGAAAACGAAGAGAGGCA 58.866 39.130 0.00 0.00 0.00 4.75
2420 2568 1.539929 CGAAGAGAGGCATGACCATCC 60.540 57.143 0.00 0.00 43.14 3.51
2421 2569 0.842635 AAGAGAGGCATGACCATCCC 59.157 55.000 0.00 0.00 43.14 3.85
2422 2570 0.326904 AGAGAGGCATGACCATCCCA 60.327 55.000 0.00 0.00 43.14 4.37
2423 2571 0.179034 GAGAGGCATGACCATCCCAC 60.179 60.000 0.00 0.00 43.14 4.61
2424 2572 0.622738 AGAGGCATGACCATCCCACT 60.623 55.000 0.00 0.00 43.14 4.00
2425 2573 0.179034 GAGGCATGACCATCCCACTC 60.179 60.000 0.00 0.00 43.14 3.51
2426 2574 0.622738 AGGCATGACCATCCCACTCT 60.623 55.000 0.00 0.00 43.14 3.24
2427 2575 0.179034 GGCATGACCATCCCACTCTC 60.179 60.000 0.00 0.00 38.86 3.20
2428 2576 0.835941 GCATGACCATCCCACTCTCT 59.164 55.000 0.00 0.00 0.00 3.10
2429 2577 1.211457 GCATGACCATCCCACTCTCTT 59.789 52.381 0.00 0.00 0.00 2.85
2451 2599 2.082231 CATCGGATGGAGATGAATGGC 58.918 52.381 10.18 0.00 46.09 4.40
2460 2608 5.314718 TGGAGATGAATGGCTGTGATTAT 57.685 39.130 0.00 0.00 0.00 1.28
2461 2609 5.698104 TGGAGATGAATGGCTGTGATTATT 58.302 37.500 0.00 0.00 0.00 1.40
2462 2610 6.131264 TGGAGATGAATGGCTGTGATTATTT 58.869 36.000 0.00 0.00 0.00 1.40
2493 2641 1.153168 CTATTGGTGGGAGGCCACG 60.153 63.158 5.01 0.00 41.19 4.94
2494 2642 2.608970 CTATTGGTGGGAGGCCACGG 62.609 65.000 5.01 0.00 41.19 4.94
2499 2647 3.636231 TGGGAGGCCACGGTCAAG 61.636 66.667 5.01 0.00 0.00 3.02
2504 2652 1.926511 GAGGCCACGGTCAAGCAATG 61.927 60.000 5.01 0.00 0.00 2.82
2535 2685 9.362539 GACAACAAAATTTTCATCTCATGCTAT 57.637 29.630 0.00 0.00 0.00 2.97
2546 2696 7.792374 TCATCTCATGCTATAAAAGGACAAC 57.208 36.000 0.00 0.00 0.00 3.32
2557 2707 7.201652 GCTATAAAAGGACAACACTTCCATCTC 60.202 40.741 0.00 0.00 35.33 2.75
2562 2712 3.368427 GGACAACACTTCCATCTCGATCA 60.368 47.826 0.00 0.00 32.82 2.92
2575 2726 3.926616 TCTCGATCAAGAGAAAACCCAC 58.073 45.455 0.00 0.00 43.56 4.61
2591 2742 2.573915 ACCCACCTGATTCCTTCTTCTC 59.426 50.000 0.00 0.00 0.00 2.87
2619 4908 4.844085 TCTTCCTCCCACATCACTCTTTTA 59.156 41.667 0.00 0.00 0.00 1.52
2631 4920 5.692115 TCACTCTTTTATGTGGATGGCTA 57.308 39.130 0.00 0.00 35.15 3.93
2632 4921 5.428253 TCACTCTTTTATGTGGATGGCTAC 58.572 41.667 0.00 0.00 35.15 3.58
2633 4922 5.045942 TCACTCTTTTATGTGGATGGCTACA 60.046 40.000 0.00 0.00 39.94 2.74
2634 4923 5.647658 CACTCTTTTATGTGGATGGCTACAA 59.352 40.000 0.00 0.00 39.05 2.41
2635 4924 6.319658 CACTCTTTTATGTGGATGGCTACAAT 59.680 38.462 0.00 0.00 39.05 2.71
2636 4925 6.543831 ACTCTTTTATGTGGATGGCTACAATC 59.456 38.462 0.00 0.00 39.05 2.67
2637 4926 6.662755 TCTTTTATGTGGATGGCTACAATCT 58.337 36.000 0.00 0.00 39.05 2.40
2638 4927 7.118723 TCTTTTATGTGGATGGCTACAATCTT 58.881 34.615 0.00 0.00 39.05 2.40
2639 4928 7.615365 TCTTTTATGTGGATGGCTACAATCTTT 59.385 33.333 0.00 0.00 39.05 2.52
2640 4929 8.815565 TTTTATGTGGATGGCTACAATCTTTA 57.184 30.769 0.00 0.00 39.05 1.85
2641 4930 8.995027 TTTATGTGGATGGCTACAATCTTTAT 57.005 30.769 0.00 0.00 39.05 1.40
2642 4931 8.621532 TTATGTGGATGGCTACAATCTTTATC 57.378 34.615 0.00 0.00 39.05 1.75
2643 4932 6.252599 TGTGGATGGCTACAATCTTTATCT 57.747 37.500 0.00 0.00 32.12 1.98
2644 4933 6.662755 TGTGGATGGCTACAATCTTTATCTT 58.337 36.000 0.00 0.00 32.12 2.40
2645 4934 7.118723 TGTGGATGGCTACAATCTTTATCTTT 58.881 34.615 0.00 0.00 32.12 2.52
2646 4935 8.271458 TGTGGATGGCTACAATCTTTATCTTTA 58.729 33.333 0.00 0.00 32.12 1.85
2647 4936 8.560374 GTGGATGGCTACAATCTTTATCTTTAC 58.440 37.037 0.00 0.00 0.00 2.01
2648 4937 7.719633 TGGATGGCTACAATCTTTATCTTTACC 59.280 37.037 0.00 0.00 0.00 2.85
2649 4938 7.939588 GGATGGCTACAATCTTTATCTTTACCT 59.060 37.037 0.00 0.00 0.00 3.08
2650 4939 9.998106 GATGGCTACAATCTTTATCTTTACCTA 57.002 33.333 0.00 0.00 0.00 3.08
2839 5137 9.825972 ACTAAAAATGAGTGAACATATTTGTCG 57.174 29.630 0.00 0.00 34.06 4.35
2863 5161 4.704540 TCAATCATGAGTAAACCGGCAATT 59.295 37.500 0.00 0.00 0.00 2.32
3214 5518 5.934781 AGTACAAATGATCCCTTCATCTCC 58.065 41.667 0.00 0.00 44.51 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 7.633789 AGTGGCATTGGTATTATCCTTATAGG 58.366 38.462 0.00 0.00 36.46 2.57
17 18 9.515226 GAATTAGTGGCATTGGTATTATCCTTA 57.485 33.333 0.00 0.00 0.00 2.69
18 19 7.174946 CGAATTAGTGGCATTGGTATTATCCTT 59.825 37.037 0.00 0.00 0.00 3.36
19 20 6.655003 CGAATTAGTGGCATTGGTATTATCCT 59.345 38.462 0.00 0.00 0.00 3.24
20 21 6.430000 ACGAATTAGTGGCATTGGTATTATCC 59.570 38.462 0.00 0.00 0.00 2.59
21 22 7.435068 ACGAATTAGTGGCATTGGTATTATC 57.565 36.000 0.00 0.00 0.00 1.75
22 23 7.500892 TGAACGAATTAGTGGCATTGGTATTAT 59.499 33.333 0.00 0.00 0.00 1.28
23 24 6.824196 TGAACGAATTAGTGGCATTGGTATTA 59.176 34.615 0.00 0.00 0.00 0.98
24 25 5.650266 TGAACGAATTAGTGGCATTGGTATT 59.350 36.000 0.00 0.00 0.00 1.89
25 26 5.189928 TGAACGAATTAGTGGCATTGGTAT 58.810 37.500 0.00 0.00 0.00 2.73
26 27 4.580868 TGAACGAATTAGTGGCATTGGTA 58.419 39.130 0.00 0.00 0.00 3.25
27 28 3.417101 TGAACGAATTAGTGGCATTGGT 58.583 40.909 0.00 0.00 0.00 3.67
28 29 4.637483 ATGAACGAATTAGTGGCATTGG 57.363 40.909 0.00 0.00 0.00 3.16
29 30 5.883661 AGAATGAACGAATTAGTGGCATTG 58.116 37.500 18.20 0.00 33.25 2.82
30 31 6.515272 AAGAATGAACGAATTAGTGGCATT 57.485 33.333 15.16 15.16 34.69 3.56
31 32 7.047891 TCTAAGAATGAACGAATTAGTGGCAT 58.952 34.615 0.00 0.00 0.00 4.40
32 33 6.403049 TCTAAGAATGAACGAATTAGTGGCA 58.597 36.000 0.00 0.00 0.00 4.92
33 34 6.903883 TCTAAGAATGAACGAATTAGTGGC 57.096 37.500 0.00 0.00 0.00 5.01
34 35 9.543018 GTTTTCTAAGAATGAACGAATTAGTGG 57.457 33.333 0.00 0.00 0.00 4.00
39 40 9.884465 CTGAAGTTTTCTAAGAATGAACGAATT 57.116 29.630 0.00 0.00 0.00 2.17
40 41 9.273016 TCTGAAGTTTTCTAAGAATGAACGAAT 57.727 29.630 0.00 0.00 0.00 3.34
41 42 8.657074 TCTGAAGTTTTCTAAGAATGAACGAA 57.343 30.769 0.00 0.00 0.00 3.85
42 43 7.926555 ACTCTGAAGTTTTCTAAGAATGAACGA 59.073 33.333 0.00 0.00 28.74 3.85
43 44 8.077836 ACTCTGAAGTTTTCTAAGAATGAACG 57.922 34.615 0.00 0.00 28.74 3.95
46 47 9.193133 CGTAACTCTGAAGTTTTCTAAGAATGA 57.807 33.333 0.00 0.00 43.28 2.57
47 48 9.193133 TCGTAACTCTGAAGTTTTCTAAGAATG 57.807 33.333 0.00 0.00 43.28 2.67
48 49 9.760077 TTCGTAACTCTGAAGTTTTCTAAGAAT 57.240 29.630 0.00 0.00 43.28 2.40
49 50 9.590451 TTTCGTAACTCTGAAGTTTTCTAAGAA 57.410 29.630 0.00 0.00 43.28 2.52
50 51 9.590451 TTTTCGTAACTCTGAAGTTTTCTAAGA 57.410 29.630 0.00 0.00 43.28 2.10
51 52 9.634300 GTTTTCGTAACTCTGAAGTTTTCTAAG 57.366 33.333 0.00 0.00 43.28 2.18
52 53 9.374838 AGTTTTCGTAACTCTGAAGTTTTCTAA 57.625 29.630 0.00 0.00 43.28 2.10
53 54 8.937634 AGTTTTCGTAACTCTGAAGTTTTCTA 57.062 30.769 0.00 0.00 43.28 2.10
54 55 7.011202 GGAGTTTTCGTAACTCTGAAGTTTTCT 59.989 37.037 22.81 0.00 43.28 2.52
55 56 7.124471 GGAGTTTTCGTAACTCTGAAGTTTTC 58.876 38.462 22.81 8.01 43.28 2.29
56 57 6.596497 TGGAGTTTTCGTAACTCTGAAGTTTT 59.404 34.615 22.81 0.00 43.28 2.43
57 58 6.036844 GTGGAGTTTTCGTAACTCTGAAGTTT 59.963 38.462 22.81 0.00 43.28 2.66
59 60 5.048507 GTGGAGTTTTCGTAACTCTGAAGT 58.951 41.667 22.81 0.00 44.49 3.01
60 61 5.290386 AGTGGAGTTTTCGTAACTCTGAAG 58.710 41.667 22.81 0.00 44.49 3.02
61 62 5.272283 AGTGGAGTTTTCGTAACTCTGAA 57.728 39.130 22.81 12.50 44.49 3.02
62 63 4.931661 AGTGGAGTTTTCGTAACTCTGA 57.068 40.909 22.81 13.09 44.49 3.27
63 64 8.928270 ATAATAGTGGAGTTTTCGTAACTCTG 57.072 34.615 22.81 0.00 44.49 3.35
103 104 9.603298 CTAAACGTCAAAAATTAGGTAGGAAAC 57.397 33.333 0.00 0.00 0.00 2.78
104 105 8.785946 CCTAAACGTCAAAAATTAGGTAGGAAA 58.214 33.333 11.67 0.00 39.57 3.13
105 106 8.156165 TCCTAAACGTCAAAAATTAGGTAGGAA 58.844 33.333 17.03 0.42 43.14 3.36
106 107 7.678837 TCCTAAACGTCAAAAATTAGGTAGGA 58.321 34.615 17.03 2.18 43.14 2.94
107 108 7.910441 TCCTAAACGTCAAAAATTAGGTAGG 57.090 36.000 17.03 0.14 43.14 3.18
108 109 8.943002 ACATCCTAAACGTCAAAAATTAGGTAG 58.057 33.333 17.03 13.76 43.14 3.18
109 110 8.851541 ACATCCTAAACGTCAAAAATTAGGTA 57.148 30.769 17.03 8.05 43.14 3.08
110 111 7.446013 TGACATCCTAAACGTCAAAAATTAGGT 59.554 33.333 17.03 6.22 43.14 3.08
111 112 7.812648 TGACATCCTAAACGTCAAAAATTAGG 58.187 34.615 13.14 13.14 43.71 2.69
114 115 8.788806 TGTATGACATCCTAAACGTCAAAAATT 58.211 29.630 0.00 0.00 42.53 1.82
115 116 8.234546 GTGTATGACATCCTAAACGTCAAAAAT 58.765 33.333 0.00 0.00 42.53 1.82
116 117 7.442969 AGTGTATGACATCCTAAACGTCAAAAA 59.557 33.333 0.00 0.00 42.53 1.94
117 118 6.932400 AGTGTATGACATCCTAAACGTCAAAA 59.068 34.615 0.00 0.00 42.53 2.44
118 119 6.460781 AGTGTATGACATCCTAAACGTCAAA 58.539 36.000 0.00 0.00 42.53 2.69
119 120 6.032956 AGTGTATGACATCCTAAACGTCAA 57.967 37.500 0.00 0.00 42.53 3.18
120 121 5.654603 AGTGTATGACATCCTAAACGTCA 57.345 39.130 0.00 0.00 43.35 4.35
121 122 5.975939 GGTAGTGTATGACATCCTAAACGTC 59.024 44.000 0.00 0.00 0.00 4.34
122 123 5.419788 TGGTAGTGTATGACATCCTAAACGT 59.580 40.000 0.00 0.00 0.00 3.99
123 124 5.747197 GTGGTAGTGTATGACATCCTAAACG 59.253 44.000 0.00 0.00 0.00 3.60
124 125 6.636705 TGTGGTAGTGTATGACATCCTAAAC 58.363 40.000 0.00 0.00 0.00 2.01
125 126 6.860790 TGTGGTAGTGTATGACATCCTAAA 57.139 37.500 0.00 0.00 0.00 1.85
126 127 7.125053 TGAATGTGGTAGTGTATGACATCCTAA 59.875 37.037 0.00 0.00 0.00 2.69
127 128 6.609616 TGAATGTGGTAGTGTATGACATCCTA 59.390 38.462 0.00 0.00 0.00 2.94
128 129 5.425217 TGAATGTGGTAGTGTATGACATCCT 59.575 40.000 0.00 0.00 0.00 3.24
129 130 5.523916 GTGAATGTGGTAGTGTATGACATCC 59.476 44.000 0.00 0.00 0.00 3.51
130 131 5.523916 GGTGAATGTGGTAGTGTATGACATC 59.476 44.000 0.00 0.00 0.00 3.06
131 132 5.189736 AGGTGAATGTGGTAGTGTATGACAT 59.810 40.000 0.00 0.00 0.00 3.06
132 133 4.530553 AGGTGAATGTGGTAGTGTATGACA 59.469 41.667 0.00 0.00 0.00 3.58
133 134 5.086104 AGGTGAATGTGGTAGTGTATGAC 57.914 43.478 0.00 0.00 0.00 3.06
134 135 5.362717 CCTAGGTGAATGTGGTAGTGTATGA 59.637 44.000 0.00 0.00 0.00 2.15
135 136 5.128827 ACCTAGGTGAATGTGGTAGTGTATG 59.871 44.000 15.42 0.00 0.00 2.39
136 137 5.278061 ACCTAGGTGAATGTGGTAGTGTAT 58.722 41.667 15.42 0.00 0.00 2.29
137 138 4.680407 ACCTAGGTGAATGTGGTAGTGTA 58.320 43.478 15.42 0.00 0.00 2.90
138 139 3.517612 ACCTAGGTGAATGTGGTAGTGT 58.482 45.455 15.42 0.00 0.00 3.55
139 140 5.453339 CCATACCTAGGTGAATGTGGTAGTG 60.453 48.000 25.33 2.99 36.81 2.74
140 141 4.654262 CCATACCTAGGTGAATGTGGTAGT 59.346 45.833 25.33 0.00 36.81 2.73
141 142 4.040461 CCCATACCTAGGTGAATGTGGTAG 59.960 50.000 25.33 7.62 36.81 3.18
142 143 3.971305 CCCATACCTAGGTGAATGTGGTA 59.029 47.826 25.33 0.57 37.62 3.25
143 144 2.777692 CCCATACCTAGGTGAATGTGGT 59.222 50.000 25.33 0.00 35.05 4.16
144 145 3.045634 TCCCATACCTAGGTGAATGTGG 58.954 50.000 25.33 20.51 0.00 4.17
145 146 3.181454 GGTCCCATACCTAGGTGAATGTG 60.181 52.174 25.33 12.30 45.75 3.21
146 147 3.046374 GGTCCCATACCTAGGTGAATGT 58.954 50.000 25.33 0.00 45.75 2.71
147 148 3.771577 GGTCCCATACCTAGGTGAATG 57.228 52.381 25.33 19.62 45.75 2.67
157 158 0.107848 CTGTCAACCGGTCCCATACC 60.108 60.000 8.04 0.00 45.77 2.73
158 159 0.107848 CCTGTCAACCGGTCCCATAC 60.108 60.000 8.04 2.49 0.00 2.39
159 160 0.252330 TCCTGTCAACCGGTCCCATA 60.252 55.000 8.04 0.00 0.00 2.74
160 161 1.131303 TTCCTGTCAACCGGTCCCAT 61.131 55.000 8.04 0.00 0.00 4.00
161 162 1.131303 ATTCCTGTCAACCGGTCCCA 61.131 55.000 8.04 3.86 0.00 4.37
162 163 0.037734 AATTCCTGTCAACCGGTCCC 59.962 55.000 8.04 0.00 0.00 4.46
163 164 1.165270 CAATTCCTGTCAACCGGTCC 58.835 55.000 8.04 0.00 0.00 4.46
164 165 1.165270 CCAATTCCTGTCAACCGGTC 58.835 55.000 8.04 0.00 0.00 4.79
165 166 0.893727 GCCAATTCCTGTCAACCGGT 60.894 55.000 0.00 0.00 0.00 5.28
166 167 0.893270 TGCCAATTCCTGTCAACCGG 60.893 55.000 0.00 0.00 0.00 5.28
167 168 0.958091 TTGCCAATTCCTGTCAACCG 59.042 50.000 0.00 0.00 0.00 4.44
168 169 1.335872 CGTTGCCAATTCCTGTCAACC 60.336 52.381 0.00 0.00 35.03 3.77
169 170 1.335872 CCGTTGCCAATTCCTGTCAAC 60.336 52.381 0.00 0.00 35.12 3.18
170 171 0.958091 CCGTTGCCAATTCCTGTCAA 59.042 50.000 0.00 0.00 0.00 3.18
171 172 1.523154 GCCGTTGCCAATTCCTGTCA 61.523 55.000 0.00 0.00 0.00 3.58
172 173 1.212751 GCCGTTGCCAATTCCTGTC 59.787 57.895 0.00 0.00 0.00 3.51
173 174 3.365535 GCCGTTGCCAATTCCTGT 58.634 55.556 0.00 0.00 0.00 4.00
213 214 9.856488 GTGGACTCGAAATTATCTATAATGCTA 57.144 33.333 0.00 0.00 33.51 3.49
214 215 8.367911 TGTGGACTCGAAATTATCTATAATGCT 58.632 33.333 0.00 0.00 33.51 3.79
215 216 8.534333 TGTGGACTCGAAATTATCTATAATGC 57.466 34.615 0.00 0.00 33.51 3.56
221 222 9.692749 GTAATCATGTGGACTCGAAATTATCTA 57.307 33.333 0.00 0.00 0.00 1.98
222 223 8.204160 TGTAATCATGTGGACTCGAAATTATCT 58.796 33.333 0.00 0.00 0.00 1.98
223 224 8.276325 GTGTAATCATGTGGACTCGAAATTATC 58.724 37.037 0.00 0.00 0.00 1.75
224 225 7.768582 TGTGTAATCATGTGGACTCGAAATTAT 59.231 33.333 0.00 0.00 0.00 1.28
225 226 7.100409 TGTGTAATCATGTGGACTCGAAATTA 58.900 34.615 0.00 0.00 0.00 1.40
226 227 5.937540 TGTGTAATCATGTGGACTCGAAATT 59.062 36.000 0.00 0.00 0.00 1.82
227 228 5.487433 TGTGTAATCATGTGGACTCGAAAT 58.513 37.500 0.00 0.00 0.00 2.17
228 229 4.888917 TGTGTAATCATGTGGACTCGAAA 58.111 39.130 0.00 0.00 0.00 3.46
229 230 4.529109 TGTGTAATCATGTGGACTCGAA 57.471 40.909 0.00 0.00 0.00 3.71
230 231 4.242475 GTTGTGTAATCATGTGGACTCGA 58.758 43.478 0.00 0.00 0.00 4.04
231 232 3.993736 TGTTGTGTAATCATGTGGACTCG 59.006 43.478 0.00 0.00 0.00 4.18
232 233 4.154195 GGTGTTGTGTAATCATGTGGACTC 59.846 45.833 0.00 0.00 0.00 3.36
233 234 4.072131 GGTGTTGTGTAATCATGTGGACT 58.928 43.478 0.00 0.00 0.00 3.85
234 235 4.072131 AGGTGTTGTGTAATCATGTGGAC 58.928 43.478 0.00 0.00 0.00 4.02
235 236 4.365514 AGGTGTTGTGTAATCATGTGGA 57.634 40.909 0.00 0.00 0.00 4.02
236 237 6.757897 ATAAGGTGTTGTGTAATCATGTGG 57.242 37.500 0.00 0.00 0.00 4.17
237 238 8.514594 AGAAATAAGGTGTTGTGTAATCATGTG 58.485 33.333 0.00 0.00 0.00 3.21
238 239 8.635765 AGAAATAAGGTGTTGTGTAATCATGT 57.364 30.769 0.00 0.00 0.00 3.21
239 240 9.912634 AAAGAAATAAGGTGTTGTGTAATCATG 57.087 29.630 0.00 0.00 0.00 3.07
241 242 9.349713 AGAAAGAAATAAGGTGTTGTGTAATCA 57.650 29.630 0.00 0.00 0.00 2.57
243 244 9.965824 CAAGAAAGAAATAAGGTGTTGTGTAAT 57.034 29.630 0.00 0.00 0.00 1.89
244 245 8.962679 ACAAGAAAGAAATAAGGTGTTGTGTAA 58.037 29.630 0.00 0.00 0.00 2.41
245 246 8.514330 ACAAGAAAGAAATAAGGTGTTGTGTA 57.486 30.769 0.00 0.00 0.00 2.90
246 247 7.404671 ACAAGAAAGAAATAAGGTGTTGTGT 57.595 32.000 0.00 0.00 0.00 3.72
247 248 8.702163 AAACAAGAAAGAAATAAGGTGTTGTG 57.298 30.769 0.00 0.00 0.00 3.33
248 249 9.150348 CAAAACAAGAAAGAAATAAGGTGTTGT 57.850 29.630 0.00 0.00 0.00 3.32
249 250 9.364989 TCAAAACAAGAAAGAAATAAGGTGTTG 57.635 29.630 0.00 0.00 0.00 3.33
250 251 9.586435 CTCAAAACAAGAAAGAAATAAGGTGTT 57.414 29.630 0.00 0.00 0.00 3.32
251 252 7.706607 GCTCAAAACAAGAAAGAAATAAGGTGT 59.293 33.333 0.00 0.00 0.00 4.16
252 253 7.169813 GGCTCAAAACAAGAAAGAAATAAGGTG 59.830 37.037 0.00 0.00 0.00 4.00
253 254 7.210174 GGCTCAAAACAAGAAAGAAATAAGGT 58.790 34.615 0.00 0.00 0.00 3.50
254 255 6.363357 CGGCTCAAAACAAGAAAGAAATAAGG 59.637 38.462 0.00 0.00 0.00 2.69
255 256 6.363357 CCGGCTCAAAACAAGAAAGAAATAAG 59.637 38.462 0.00 0.00 0.00 1.73
256 257 6.183360 ACCGGCTCAAAACAAGAAAGAAATAA 60.183 34.615 0.00 0.00 0.00 1.40
257 258 5.300792 ACCGGCTCAAAACAAGAAAGAAATA 59.699 36.000 0.00 0.00 0.00 1.40
258 259 4.099419 ACCGGCTCAAAACAAGAAAGAAAT 59.901 37.500 0.00 0.00 0.00 2.17
259 260 3.445805 ACCGGCTCAAAACAAGAAAGAAA 59.554 39.130 0.00 0.00 0.00 2.52
260 261 3.020984 ACCGGCTCAAAACAAGAAAGAA 58.979 40.909 0.00 0.00 0.00 2.52
261 262 2.650322 ACCGGCTCAAAACAAGAAAGA 58.350 42.857 0.00 0.00 0.00 2.52
262 263 3.436700 AACCGGCTCAAAACAAGAAAG 57.563 42.857 0.00 0.00 0.00 2.62
263 264 3.878160 AAACCGGCTCAAAACAAGAAA 57.122 38.095 0.00 0.00 0.00 2.52
264 265 3.878160 AAAACCGGCTCAAAACAAGAA 57.122 38.095 0.00 0.00 0.00 2.52
265 266 3.878160 AAAAACCGGCTCAAAACAAGA 57.122 38.095 0.00 0.00 0.00 3.02
266 267 5.528870 AGATAAAAACCGGCTCAAAACAAG 58.471 37.500 0.00 0.00 0.00 3.16
267 268 5.523438 AGATAAAAACCGGCTCAAAACAA 57.477 34.783 0.00 0.00 0.00 2.83
268 269 5.508320 GGAAGATAAAAACCGGCTCAAAACA 60.508 40.000 0.00 0.00 0.00 2.83
269 270 4.921515 GGAAGATAAAAACCGGCTCAAAAC 59.078 41.667 0.00 0.00 0.00 2.43
270 271 4.830600 AGGAAGATAAAAACCGGCTCAAAA 59.169 37.500 0.00 0.00 0.00 2.44
271 272 4.403734 AGGAAGATAAAAACCGGCTCAAA 58.596 39.130 0.00 0.00 0.00 2.69
272 273 4.028993 AGGAAGATAAAAACCGGCTCAA 57.971 40.909 0.00 0.00 0.00 3.02
273 274 3.713826 AGGAAGATAAAAACCGGCTCA 57.286 42.857 0.00 0.00 0.00 4.26
274 275 6.095021 ACATAAAGGAAGATAAAAACCGGCTC 59.905 38.462 0.00 0.00 0.00 4.70
275 276 5.949952 ACATAAAGGAAGATAAAAACCGGCT 59.050 36.000 0.00 0.00 0.00 5.52
276 277 6.033966 CACATAAAGGAAGATAAAAACCGGC 58.966 40.000 0.00 0.00 0.00 6.13
277 278 7.385778 TCACATAAAGGAAGATAAAAACCGG 57.614 36.000 0.00 0.00 0.00 5.28
278 279 9.855021 AATTCACATAAAGGAAGATAAAAACCG 57.145 29.630 0.00 0.00 0.00 4.44
284 285 9.527157 TCCAACAATTCACATAAAGGAAGATAA 57.473 29.630 0.00 0.00 0.00 1.75
285 286 9.699410 ATCCAACAATTCACATAAAGGAAGATA 57.301 29.630 0.00 0.00 0.00 1.98
286 287 8.472413 CATCCAACAATTCACATAAAGGAAGAT 58.528 33.333 0.00 0.00 0.00 2.40
287 288 7.577426 GCATCCAACAATTCACATAAAGGAAGA 60.577 37.037 0.00 0.00 0.00 2.87
288 289 6.532657 GCATCCAACAATTCACATAAAGGAAG 59.467 38.462 0.00 0.00 0.00 3.46
289 290 6.211184 AGCATCCAACAATTCACATAAAGGAA 59.789 34.615 0.00 0.00 0.00 3.36
290 291 5.716228 AGCATCCAACAATTCACATAAAGGA 59.284 36.000 0.00 0.00 0.00 3.36
291 292 5.808540 CAGCATCCAACAATTCACATAAAGG 59.191 40.000 0.00 0.00 0.00 3.11
292 293 6.309494 CACAGCATCCAACAATTCACATAAAG 59.691 38.462 0.00 0.00 0.00 1.85
293 294 6.157904 CACAGCATCCAACAATTCACATAAA 58.842 36.000 0.00 0.00 0.00 1.40
294 295 5.243507 ACACAGCATCCAACAATTCACATAA 59.756 36.000 0.00 0.00 0.00 1.90
295 296 4.766373 ACACAGCATCCAACAATTCACATA 59.234 37.500 0.00 0.00 0.00 2.29
296 297 3.575256 ACACAGCATCCAACAATTCACAT 59.425 39.130 0.00 0.00 0.00 3.21
297 298 2.957680 ACACAGCATCCAACAATTCACA 59.042 40.909 0.00 0.00 0.00 3.58
298 299 3.243501 ACACACAGCATCCAACAATTCAC 60.244 43.478 0.00 0.00 0.00 3.18
299 300 2.957680 ACACACAGCATCCAACAATTCA 59.042 40.909 0.00 0.00 0.00 2.57
300 301 3.243501 ACACACACAGCATCCAACAATTC 60.244 43.478 0.00 0.00 0.00 2.17
301 302 2.694628 ACACACACAGCATCCAACAATT 59.305 40.909 0.00 0.00 0.00 2.32
302 303 2.309613 ACACACACAGCATCCAACAAT 58.690 42.857 0.00 0.00 0.00 2.71
303 304 1.761449 ACACACACAGCATCCAACAA 58.239 45.000 0.00 0.00 0.00 2.83
304 305 2.629336 TACACACACAGCATCCAACA 57.371 45.000 0.00 0.00 0.00 3.33
305 306 2.878406 ACTTACACACACAGCATCCAAC 59.122 45.455 0.00 0.00 0.00 3.77
306 307 2.877786 CACTTACACACACAGCATCCAA 59.122 45.455 0.00 0.00 0.00 3.53
307 308 2.158827 ACACTTACACACACAGCATCCA 60.159 45.455 0.00 0.00 0.00 3.41
308 309 2.494059 ACACTTACACACACAGCATCC 58.506 47.619 0.00 0.00 0.00 3.51
309 310 5.867174 TGTATACACTTACACACACAGCATC 59.133 40.000 0.08 0.00 0.00 3.91
310 311 5.789521 TGTATACACTTACACACACAGCAT 58.210 37.500 0.08 0.00 0.00 3.79
311 312 5.203060 TGTATACACTTACACACACAGCA 57.797 39.130 0.08 0.00 0.00 4.41
312 313 6.809689 TGTATGTATACACTTACACACACAGC 59.190 38.462 7.96 0.00 39.23 4.40
313 314 8.751302 TTGTATGTATACACTTACACACACAG 57.249 34.615 15.66 0.00 38.75 3.66
314 315 8.361889 ACTTGTATGTATACACTTACACACACA 58.638 33.333 15.66 4.23 38.75 3.72
315 316 8.752766 ACTTGTATGTATACACTTACACACAC 57.247 34.615 15.66 2.70 38.75 3.82
316 317 9.844790 GTACTTGTATGTATACACTTACACACA 57.155 33.333 15.66 6.59 42.06 3.72
331 332 9.366216 CACACATATTGTACAGTACTTGTATGT 57.634 33.333 19.55 19.55 43.79 2.29
332 333 9.366216 ACACACATATTGTACAGTACTTGTATG 57.634 33.333 12.07 16.35 43.79 2.39
335 336 8.799367 TCTACACACATATTGTACAGTACTTGT 58.201 33.333 12.07 4.39 43.96 3.16
336 337 9.803315 ATCTACACACATATTGTACAGTACTTG 57.197 33.333 12.07 3.81 35.67 3.16
350 351 9.582648 TGCCTTCTAGTATAATCTACACACATA 57.417 33.333 0.00 0.00 0.00 2.29
351 352 8.478775 TGCCTTCTAGTATAATCTACACACAT 57.521 34.615 0.00 0.00 0.00 3.21
352 353 7.891498 TGCCTTCTAGTATAATCTACACACA 57.109 36.000 0.00 0.00 0.00 3.72
353 354 9.595823 TTTTGCCTTCTAGTATAATCTACACAC 57.404 33.333 0.00 0.00 0.00 3.82
370 371 9.249457 GCCTAGTATAATGAAAATTTTGCCTTC 57.751 33.333 8.47 0.00 0.00 3.46
371 372 8.204160 GGCCTAGTATAATGAAAATTTTGCCTT 58.796 33.333 8.47 1.75 0.00 4.35
372 373 7.202001 GGGCCTAGTATAATGAAAATTTTGCCT 60.202 37.037 8.47 0.00 0.00 4.75
373 374 6.929049 GGGCCTAGTATAATGAAAATTTTGCC 59.071 38.462 8.47 9.70 0.00 4.52
374 375 7.496747 TGGGCCTAGTATAATGAAAATTTTGC 58.503 34.615 8.47 0.69 0.00 3.68
375 376 9.480053 CATGGGCCTAGTATAATGAAAATTTTG 57.520 33.333 8.47 0.00 0.00 2.44
376 377 8.650490 CCATGGGCCTAGTATAATGAAAATTTT 58.350 33.333 2.85 2.28 0.00 1.82
377 378 7.256296 GCCATGGGCCTAGTATAATGAAAATTT 60.256 37.037 15.13 0.00 44.06 1.82
378 379 6.211384 GCCATGGGCCTAGTATAATGAAAATT 59.789 38.462 15.13 0.00 44.06 1.82
379 380 5.716703 GCCATGGGCCTAGTATAATGAAAAT 59.283 40.000 15.13 0.00 44.06 1.82
380 381 5.076873 GCCATGGGCCTAGTATAATGAAAA 58.923 41.667 15.13 0.00 44.06 2.29
381 382 4.662278 GCCATGGGCCTAGTATAATGAAA 58.338 43.478 15.13 0.00 44.06 2.69
382 383 4.301072 GCCATGGGCCTAGTATAATGAA 57.699 45.455 15.13 0.00 44.06 2.57
452 453 8.877864 TCCATTGTCCAACACTATATTTTCTT 57.122 30.769 0.00 0.00 0.00 2.52
600 602 8.392372 TGATTTCAAAAATGAATTTGCCATGA 57.608 26.923 0.00 0.00 39.57 3.07
603 605 8.344098 GTCTTGATTTCAAAAATGAATTTGCCA 58.656 29.630 0.00 0.00 39.57 4.92
651 657 9.862585 GACAAAAGAAACATTGCGAAATAATTT 57.137 25.926 0.00 0.00 0.00 1.82
652 658 9.039870 TGACAAAAGAAACATTGCGAAATAATT 57.960 25.926 0.00 0.00 0.00 1.40
656 662 6.042143 ACTGACAAAAGAAACATTGCGAAAT 58.958 32.000 0.00 0.00 0.00 2.17
659 665 4.630894 ACTGACAAAAGAAACATTGCGA 57.369 36.364 0.00 0.00 0.00 5.10
675 681 8.538409 AAAAATGATGGCAGAAAAATACTGAC 57.462 30.769 0.00 0.00 43.02 3.51
676 682 9.859427 CTAAAAATGATGGCAGAAAAATACTGA 57.141 29.630 0.00 0.00 37.54 3.41
683 689 4.285517 TGGCCTAAAAATGATGGCAGAAAA 59.714 37.500 3.32 0.00 46.53 2.29
687 693 3.493699 CCATGGCCTAAAAATGATGGCAG 60.494 47.826 3.32 0.00 46.53 4.85
700 706 1.295020 ACCTAAGTTGCCATGGCCTA 58.705 50.000 33.44 18.99 41.09 3.93
703 709 1.839424 AGAACCTAAGTTGCCATGGC 58.161 50.000 30.54 30.54 35.94 4.40
782 856 2.882761 GAGGAAAAGCAACCGTTTACCT 59.117 45.455 0.00 0.00 0.00 3.08
806 880 4.156182 GTTGGCTGTATTTTCGCTTACAC 58.844 43.478 0.00 0.00 0.00 2.90
868 942 1.803555 TCAAATTCACTCGCATCGCAA 59.196 42.857 0.00 0.00 0.00 4.85
869 943 1.437625 TCAAATTCACTCGCATCGCA 58.562 45.000 0.00 0.00 0.00 5.10
870 944 2.525750 TTCAAATTCACTCGCATCGC 57.474 45.000 0.00 0.00 0.00 4.58
871 945 3.239026 GCATTTCAAATTCACTCGCATCG 59.761 43.478 0.00 0.00 0.00 3.84
872 946 3.549070 GGCATTTCAAATTCACTCGCATC 59.451 43.478 0.00 0.00 0.00 3.91
873 947 3.056678 TGGCATTTCAAATTCACTCGCAT 60.057 39.130 0.00 0.00 0.00 4.73
930 1012 2.707902 GGCTGCACCTGTTATAGCC 58.292 57.895 0.50 0.00 46.04 3.93
954 1045 3.252484 CGCACGCGCTACCTAACC 61.252 66.667 5.73 0.00 35.30 2.85
995 1086 2.202892 GTTCCTCCGCCATCGACC 60.203 66.667 0.00 0.00 38.10 4.79
1561 1694 3.699894 CCACCAGAGCAGCTCCGT 61.700 66.667 19.40 12.59 0.00 4.69
1717 1850 2.125350 GCAGTTCCGGAGCAGGAG 60.125 66.667 21.22 8.23 41.98 3.69
1797 1930 1.680314 GAAGACCCTCCCGTACCGT 60.680 63.158 0.00 0.00 0.00 4.83
2292 2440 0.812549 ACGTTGACACCCAAACCAAC 59.187 50.000 0.00 0.00 36.36 3.77
2335 2483 7.907214 ATATTCAGAGTGTGTAAAACAGGAC 57.093 36.000 0.00 0.00 40.26 3.85
2352 2500 6.363626 CGGATCGAGTTGACCTAAATATTCAG 59.636 42.308 0.00 0.00 0.00 3.02
2355 2503 5.303589 TCCGGATCGAGTTGACCTAAATATT 59.696 40.000 0.00 0.00 0.00 1.28
2360 2508 2.133281 TCCGGATCGAGTTGACCTAA 57.867 50.000 0.00 0.00 0.00 2.69
2371 2519 3.097877 TCAACTCATCAATCCGGATCG 57.902 47.619 19.43 6.76 0.00 3.69
2372 2520 5.528690 TCATTTCAACTCATCAATCCGGATC 59.471 40.000 19.43 0.00 0.00 3.36
2373 2521 5.439721 TCATTTCAACTCATCAATCCGGAT 58.560 37.500 12.38 12.38 0.00 4.18
2374 2522 4.842574 TCATTTCAACTCATCAATCCGGA 58.157 39.130 6.61 6.61 0.00 5.14
2375 2523 5.565592 TTCATTTCAACTCATCAATCCGG 57.434 39.130 0.00 0.00 0.00 5.14
2376 2524 6.032775 CGTTTTCATTTCAACTCATCAATCCG 59.967 38.462 0.00 0.00 0.00 4.18
2377 2525 7.083858 TCGTTTTCATTTCAACTCATCAATCC 58.916 34.615 0.00 0.00 0.00 3.01
2378 2526 8.506140 TTCGTTTTCATTTCAACTCATCAATC 57.494 30.769 0.00 0.00 0.00 2.67
2379 2527 8.352201 TCTTCGTTTTCATTTCAACTCATCAAT 58.648 29.630 0.00 0.00 0.00 2.57
2391 2539 4.761739 TCATGCCTCTCTTCGTTTTCATTT 59.238 37.500 0.00 0.00 0.00 2.32
2409 2557 0.835941 AGAGAGTGGGATGGTCATGC 59.164 55.000 0.00 0.00 0.00 4.06
2411 2559 2.122768 GGAAGAGAGTGGGATGGTCAT 58.877 52.381 0.00 0.00 0.00 3.06
2420 2568 2.522836 CATCCGATGGAAGAGAGTGG 57.477 55.000 0.00 0.00 34.34 4.00
2451 2599 8.029642 AGACGTTGGTTTCTAAATAATCACAG 57.970 34.615 0.00 0.00 0.00 3.66
2493 2641 1.527034 TGTCTGCTCATTGCTTGACC 58.473 50.000 0.00 0.00 41.40 4.02
2494 2642 2.291465 TGTTGTCTGCTCATTGCTTGAC 59.709 45.455 0.00 0.00 43.37 3.18
2499 2647 5.662211 AAATTTTGTTGTCTGCTCATTGC 57.338 34.783 0.00 0.00 43.25 3.56
2504 2652 6.919662 TGAGATGAAAATTTTGTTGTCTGCTC 59.080 34.615 8.47 5.60 0.00 4.26
2507 2655 7.384115 AGCATGAGATGAAAATTTTGTTGTCTG 59.616 33.333 8.47 5.46 0.00 3.51
2518 2666 9.412460 TGTCCTTTTATAGCATGAGATGAAAAT 57.588 29.630 0.00 0.00 0.00 1.82
2535 2685 4.994852 CGAGATGGAAGTGTTGTCCTTTTA 59.005 41.667 0.00 0.00 36.03 1.52
2546 2696 4.645762 TCTCTTGATCGAGATGGAAGTG 57.354 45.455 13.24 0.30 35.23 3.16
2557 2707 2.744202 CAGGTGGGTTTTCTCTTGATCG 59.256 50.000 0.00 0.00 0.00 3.69
2562 2712 3.399305 AGGAATCAGGTGGGTTTTCTCTT 59.601 43.478 0.00 0.00 0.00 2.85
2575 2726 1.139853 CGGGGAGAAGAAGGAATCAGG 59.860 57.143 0.00 0.00 0.00 3.86
2591 2742 1.972660 GATGTGGGAGGAAGACGGGG 61.973 65.000 0.00 0.00 0.00 5.73
2619 4908 6.845908 AGATAAAGATTGTAGCCATCCACAT 58.154 36.000 0.00 0.00 0.00 3.21
2654 4943 9.797556 CACATGCACACTTACTAGTTAGTTATA 57.202 33.333 11.75 0.59 37.73 0.98
2655 4944 7.277981 GCACATGCACACTTACTAGTTAGTTAT 59.722 37.037 11.75 1.19 41.59 1.89
2656 4945 6.588756 GCACATGCACACTTACTAGTTAGTTA 59.411 38.462 11.75 0.60 41.59 2.24
2657 4946 5.408604 GCACATGCACACTTACTAGTTAGTT 59.591 40.000 11.75 2.07 41.59 2.24
2658 4947 4.929808 GCACATGCACACTTACTAGTTAGT 59.070 41.667 8.71 8.71 41.59 2.24
2659 4948 5.456192 GCACATGCACACTTACTAGTTAG 57.544 43.478 0.00 3.53 41.59 2.34
2839 5137 3.006940 TGCCGGTTTACTCATGATTGAC 58.993 45.455 1.90 0.00 0.00 3.18
2863 5161 7.107639 ACTTCTTTGAAATTTTCCCTCGAAA 57.892 32.000 6.68 0.20 36.18 3.46
3214 5518 3.238597 TGGACATTCCCCCTTTTCTTTG 58.761 45.455 0.00 0.00 35.03 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.