Multiple sequence alignment - TraesCS7D01G439800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G439800 chr7D 100.000 2405 0 0 1 2405 559395262 559392858 0.000000e+00 4442
1 TraesCS7D01G439800 chr7B 90.444 900 45 22 807 1690 607530192 607529318 0.000000e+00 1147
2 TraesCS7D01G439800 chr7B 76.497 451 64 19 379 809 607530694 607530266 8.710000e-50 207
3 TraesCS7D01G439800 chr7B 81.707 164 9 10 2244 2405 607528865 607528721 1.510000e-22 117
4 TraesCS7D01G439800 chr7A 80.734 1526 159 78 325 1775 644105538 644104073 0.000000e+00 1064
5 TraesCS7D01G439800 chr7A 82.365 482 40 16 1934 2405 644103963 644103517 6.280000e-101 377


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G439800 chr7D 559392858 559395262 2404 True 4442.000000 4442 100.000000 1 2405 1 chr7D.!!$R1 2404
1 TraesCS7D01G439800 chr7B 607528721 607530694 1973 True 490.333333 1147 82.882667 379 2405 3 chr7B.!!$R1 2026
2 TraesCS7D01G439800 chr7A 644103517 644105538 2021 True 720.500000 1064 81.549500 325 2405 2 chr7A.!!$R1 2080

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
566 599 0.025513 GCATGCTAACAGACGCTTCG 59.974 55.0 11.37 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2064 2315 0.034059 CGGAGTTCAAGTCTGCACCT 59.966 55.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.803426 CGAGAGCCACCGCAGTCC 62.803 72.222 0.00 0.00 37.52 3.85
21 22 3.695606 GAGAGCCACCGCAGTCCA 61.696 66.667 0.00 0.00 37.52 4.02
22 23 3.240134 GAGAGCCACCGCAGTCCAA 62.240 63.158 0.00 0.00 37.52 3.53
23 24 2.281484 GAGCCACCGCAGTCCAAA 60.281 61.111 0.00 0.00 37.52 3.28
24 25 1.675641 GAGCCACCGCAGTCCAAAT 60.676 57.895 0.00 0.00 37.52 2.32
25 26 1.228552 AGCCACCGCAGTCCAAATT 60.229 52.632 0.00 0.00 37.52 1.82
26 27 1.080569 GCCACCGCAGTCCAAATTG 60.081 57.895 0.00 0.00 34.03 2.32
27 28 1.080569 CCACCGCAGTCCAAATTGC 60.081 57.895 0.00 0.00 34.95 3.56
28 29 1.526575 CCACCGCAGTCCAAATTGCT 61.527 55.000 0.00 0.00 36.07 3.91
29 30 1.164411 CACCGCAGTCCAAATTGCTA 58.836 50.000 0.00 0.00 36.07 3.49
30 31 1.745087 CACCGCAGTCCAAATTGCTAT 59.255 47.619 0.00 0.00 36.07 2.97
31 32 2.164219 CACCGCAGTCCAAATTGCTATT 59.836 45.455 0.00 0.00 36.07 1.73
32 33 2.164219 ACCGCAGTCCAAATTGCTATTG 59.836 45.455 0.00 0.00 36.07 1.90
33 34 2.187707 CGCAGTCCAAATTGCTATTGC 58.812 47.619 0.00 0.00 36.07 3.56
43 44 2.779282 TGCTATTGCACCCACGATG 58.221 52.632 0.00 0.00 45.31 3.84
44 45 0.747644 TGCTATTGCACCCACGATGG 60.748 55.000 0.00 0.00 45.31 3.51
45 46 0.748005 GCTATTGCACCCACGATGGT 60.748 55.000 0.00 0.00 39.96 3.55
51 52 2.751436 ACCCACGATGGTGCATGC 60.751 61.111 11.82 11.82 43.00 4.06
52 53 3.520862 CCCACGATGGTGCATGCC 61.521 66.667 16.68 6.42 43.00 4.40
53 54 2.438975 CCACGATGGTGCATGCCT 60.439 61.111 16.68 0.00 43.00 4.75
54 55 2.475466 CCACGATGGTGCATGCCTC 61.475 63.158 16.68 8.35 43.00 4.70
55 56 1.746239 CACGATGGTGCATGCCTCA 60.746 57.895 16.68 13.72 37.35 3.86
56 57 1.002257 ACGATGGTGCATGCCTCAA 60.002 52.632 16.68 2.03 0.00 3.02
57 58 1.308069 ACGATGGTGCATGCCTCAAC 61.308 55.000 16.68 10.94 0.00 3.18
58 59 1.307355 CGATGGTGCATGCCTCAACA 61.307 55.000 16.68 5.88 35.39 3.33
59 60 0.889994 GATGGTGCATGCCTCAACAA 59.110 50.000 16.68 0.00 34.49 2.83
60 61 0.604578 ATGGTGCATGCCTCAACAAC 59.395 50.000 16.68 4.22 34.49 3.32
61 62 0.467844 TGGTGCATGCCTCAACAACT 60.468 50.000 16.68 0.00 0.00 3.16
62 63 0.242017 GGTGCATGCCTCAACAACTC 59.758 55.000 16.68 0.00 0.00 3.01
63 64 0.110056 GTGCATGCCTCAACAACTCG 60.110 55.000 16.68 0.00 0.00 4.18
64 65 1.236616 TGCATGCCTCAACAACTCGG 61.237 55.000 16.68 0.00 0.00 4.63
65 66 1.237285 GCATGCCTCAACAACTCGGT 61.237 55.000 6.36 0.00 0.00 4.69
66 67 0.518636 CATGCCTCAACAACTCGGTG 59.481 55.000 0.00 0.00 0.00 4.94
67 68 0.108585 ATGCCTCAACAACTCGGTGT 59.891 50.000 0.00 0.00 0.00 4.16
68 69 0.107410 TGCCTCAACAACTCGGTGTT 60.107 50.000 0.00 0.00 42.48 3.32
86 87 3.857038 GCCGCCGTCCCCTCATAA 61.857 66.667 0.00 0.00 0.00 1.90
87 88 2.108362 CCGCCGTCCCCTCATAAC 59.892 66.667 0.00 0.00 0.00 1.89
88 89 2.727392 CCGCCGTCCCCTCATAACA 61.727 63.158 0.00 0.00 0.00 2.41
89 90 1.520787 CGCCGTCCCCTCATAACAC 60.521 63.158 0.00 0.00 0.00 3.32
90 91 1.153229 GCCGTCCCCTCATAACACC 60.153 63.158 0.00 0.00 0.00 4.16
91 92 1.906105 GCCGTCCCCTCATAACACCA 61.906 60.000 0.00 0.00 0.00 4.17
92 93 0.178068 CCGTCCCCTCATAACACCAG 59.822 60.000 0.00 0.00 0.00 4.00
93 94 0.902531 CGTCCCCTCATAACACCAGT 59.097 55.000 0.00 0.00 0.00 4.00
94 95 1.134788 CGTCCCCTCATAACACCAGTC 60.135 57.143 0.00 0.00 0.00 3.51
95 96 1.209747 GTCCCCTCATAACACCAGTCC 59.790 57.143 0.00 0.00 0.00 3.85
96 97 1.080498 TCCCCTCATAACACCAGTCCT 59.920 52.381 0.00 0.00 0.00 3.85
97 98 1.486726 CCCCTCATAACACCAGTCCTC 59.513 57.143 0.00 0.00 0.00 3.71
98 99 1.137086 CCCTCATAACACCAGTCCTCG 59.863 57.143 0.00 0.00 0.00 4.63
99 100 1.471676 CCTCATAACACCAGTCCTCGC 60.472 57.143 0.00 0.00 0.00 5.03
100 101 0.535335 TCATAACACCAGTCCTCGCC 59.465 55.000 0.00 0.00 0.00 5.54
101 102 0.537188 CATAACACCAGTCCTCGCCT 59.463 55.000 0.00 0.00 0.00 5.52
102 103 1.754803 CATAACACCAGTCCTCGCCTA 59.245 52.381 0.00 0.00 0.00 3.93
103 104 1.180029 TAACACCAGTCCTCGCCTAC 58.820 55.000 0.00 0.00 0.00 3.18
104 105 0.830444 AACACCAGTCCTCGCCTACA 60.830 55.000 0.00 0.00 0.00 2.74
105 106 1.215647 CACCAGTCCTCGCCTACAC 59.784 63.158 0.00 0.00 0.00 2.90
106 107 1.228769 ACCAGTCCTCGCCTACACA 60.229 57.895 0.00 0.00 0.00 3.72
107 108 0.614979 ACCAGTCCTCGCCTACACAT 60.615 55.000 0.00 0.00 0.00 3.21
108 109 1.341679 ACCAGTCCTCGCCTACACATA 60.342 52.381 0.00 0.00 0.00 2.29
109 110 1.067212 CCAGTCCTCGCCTACACATAC 59.933 57.143 0.00 0.00 0.00 2.39
110 111 1.749063 CAGTCCTCGCCTACACATACA 59.251 52.381 0.00 0.00 0.00 2.29
111 112 2.165641 CAGTCCTCGCCTACACATACAA 59.834 50.000 0.00 0.00 0.00 2.41
112 113 2.829720 AGTCCTCGCCTACACATACAAA 59.170 45.455 0.00 0.00 0.00 2.83
113 114 3.259876 AGTCCTCGCCTACACATACAAAA 59.740 43.478 0.00 0.00 0.00 2.44
114 115 3.998341 GTCCTCGCCTACACATACAAAAA 59.002 43.478 0.00 0.00 0.00 1.94
130 131 3.147826 AAAAACAGCCAGGGGAAGG 57.852 52.632 0.00 0.00 0.00 3.46
131 132 0.471780 AAAAACAGCCAGGGGAAGGG 60.472 55.000 0.00 0.00 0.00 3.95
132 133 2.386391 AAAACAGCCAGGGGAAGGGG 62.386 60.000 0.00 0.00 0.00 4.79
135 136 4.301662 AGCCAGGGGAAGGGGGAA 62.302 66.667 0.00 0.00 0.00 3.97
136 137 3.744155 GCCAGGGGAAGGGGGAAG 61.744 72.222 0.00 0.00 0.00 3.46
137 138 3.023735 CCAGGGGAAGGGGGAAGG 61.024 72.222 0.00 0.00 0.00 3.46
138 139 3.023735 CAGGGGAAGGGGGAAGGG 61.024 72.222 0.00 0.00 0.00 3.95
139 140 4.387765 AGGGGAAGGGGGAAGGGG 62.388 72.222 0.00 0.00 0.00 4.79
142 143 2.947217 GGAAGGGGGAAGGGGCTT 60.947 66.667 0.00 0.00 0.00 4.35
143 144 2.558147 GGAAGGGGGAAGGGGCTTT 61.558 63.158 0.00 0.00 0.00 3.51
144 145 1.469708 GAAGGGGGAAGGGGCTTTT 59.530 57.895 0.00 0.00 0.00 2.27
145 146 0.904865 GAAGGGGGAAGGGGCTTTTG 60.905 60.000 0.00 0.00 0.00 2.44
146 147 3.003173 GGGGGAAGGGGCTTTTGC 61.003 66.667 0.00 0.00 46.64 3.68
156 157 3.034030 GCTTTTGCGTCAGCCAGT 58.966 55.556 0.00 0.00 44.33 4.00
157 158 1.081840 GCTTTTGCGTCAGCCAGTC 60.082 57.895 0.00 0.00 44.33 3.51
158 159 1.785041 GCTTTTGCGTCAGCCAGTCA 61.785 55.000 0.00 0.00 44.33 3.41
159 160 0.662619 CTTTTGCGTCAGCCAGTCAA 59.337 50.000 0.00 0.00 44.33 3.18
160 161 1.065401 CTTTTGCGTCAGCCAGTCAAA 59.935 47.619 0.00 0.00 44.33 2.69
161 162 1.317613 TTTGCGTCAGCCAGTCAAAT 58.682 45.000 0.00 0.00 44.33 2.32
162 163 2.177394 TTGCGTCAGCCAGTCAAATA 57.823 45.000 0.00 0.00 44.33 1.40
163 164 2.401583 TGCGTCAGCCAGTCAAATAT 57.598 45.000 0.00 0.00 44.33 1.28
164 165 2.279741 TGCGTCAGCCAGTCAAATATC 58.720 47.619 0.00 0.00 44.33 1.63
165 166 2.093500 TGCGTCAGCCAGTCAAATATCT 60.093 45.455 0.00 0.00 44.33 1.98
166 167 3.132111 TGCGTCAGCCAGTCAAATATCTA 59.868 43.478 0.00 0.00 44.33 1.98
167 168 4.202253 TGCGTCAGCCAGTCAAATATCTAT 60.202 41.667 0.00 0.00 44.33 1.98
168 169 4.752101 GCGTCAGCCAGTCAAATATCTATT 59.248 41.667 0.00 0.00 37.42 1.73
169 170 5.237344 GCGTCAGCCAGTCAAATATCTATTT 59.763 40.000 0.00 0.00 35.36 1.40
170 171 6.782390 GCGTCAGCCAGTCAAATATCTATTTG 60.782 42.308 13.95 13.95 43.88 2.32
171 172 8.846849 GCGTCAGCCAGTCAAATATCTATTTGA 61.847 40.741 17.33 17.33 45.94 2.69
200 201 9.884465 AATAGTGAGAGAAAACTTTGAAATTCG 57.116 29.630 0.00 0.00 0.00 3.34
201 202 7.553881 AGTGAGAGAAAACTTTGAAATTCGA 57.446 32.000 0.00 0.00 0.00 3.71
202 203 7.634522 AGTGAGAGAAAACTTTGAAATTCGAG 58.365 34.615 0.00 0.00 0.00 4.04
203 204 7.495934 AGTGAGAGAAAACTTTGAAATTCGAGA 59.504 33.333 3.70 0.00 0.00 4.04
204 205 7.584485 GTGAGAGAAAACTTTGAAATTCGAGAC 59.416 37.037 3.70 0.00 0.00 3.36
205 206 7.279981 TGAGAGAAAACTTTGAAATTCGAGACA 59.720 33.333 3.70 0.00 0.00 3.41
206 207 7.634522 AGAGAAAACTTTGAAATTCGAGACAG 58.365 34.615 3.70 0.00 0.00 3.51
207 208 7.495934 AGAGAAAACTTTGAAATTCGAGACAGA 59.504 33.333 3.70 0.00 0.00 3.41
208 209 8.159344 AGAAAACTTTGAAATTCGAGACAGAT 57.841 30.769 3.70 0.00 0.00 2.90
209 210 8.286097 AGAAAACTTTGAAATTCGAGACAGATC 58.714 33.333 3.70 0.00 0.00 2.75
210 211 7.496529 AAACTTTGAAATTCGAGACAGATCA 57.503 32.000 0.00 0.00 0.00 2.92
211 212 7.678947 AACTTTGAAATTCGAGACAGATCAT 57.321 32.000 0.00 0.00 0.00 2.45
212 213 7.069852 ACTTTGAAATTCGAGACAGATCATG 57.930 36.000 0.00 0.00 0.00 3.07
213 214 6.093219 ACTTTGAAATTCGAGACAGATCATGG 59.907 38.462 0.00 0.00 0.00 3.66
214 215 4.445453 TGAAATTCGAGACAGATCATGGG 58.555 43.478 0.00 0.00 0.00 4.00
215 216 2.540265 ATTCGAGACAGATCATGGGC 57.460 50.000 0.00 0.00 0.00 5.36
216 217 1.489481 TTCGAGACAGATCATGGGCT 58.511 50.000 0.00 0.00 0.00 5.19
217 218 0.749049 TCGAGACAGATCATGGGCTG 59.251 55.000 12.33 12.33 38.10 4.85
218 219 0.249784 CGAGACAGATCATGGGCTGG 60.250 60.000 16.53 0.00 36.47 4.85
219 220 0.835941 GAGACAGATCATGGGCTGGT 59.164 55.000 16.53 6.62 36.47 4.00
220 221 1.211457 GAGACAGATCATGGGCTGGTT 59.789 52.381 16.53 7.11 36.47 3.67
221 222 1.637553 AGACAGATCATGGGCTGGTTT 59.362 47.619 16.53 0.61 36.47 3.27
222 223 2.846206 AGACAGATCATGGGCTGGTTTA 59.154 45.455 16.53 0.00 36.47 2.01
223 224 3.266772 AGACAGATCATGGGCTGGTTTAA 59.733 43.478 16.53 0.00 36.47 1.52
224 225 4.016444 GACAGATCATGGGCTGGTTTAAA 58.984 43.478 16.53 0.00 36.47 1.52
225 226 4.613437 ACAGATCATGGGCTGGTTTAAAT 58.387 39.130 16.53 0.00 36.47 1.40
226 227 4.403432 ACAGATCATGGGCTGGTTTAAATG 59.597 41.667 16.53 0.00 36.47 2.32
227 228 4.646040 CAGATCATGGGCTGGTTTAAATGA 59.354 41.667 0.00 0.00 0.00 2.57
228 229 5.303589 CAGATCATGGGCTGGTTTAAATGAT 59.696 40.000 0.00 0.00 37.44 2.45
229 230 6.491062 CAGATCATGGGCTGGTTTAAATGATA 59.509 38.462 0.00 0.00 35.47 2.15
230 231 6.491403 AGATCATGGGCTGGTTTAAATGATAC 59.509 38.462 0.00 0.00 35.47 2.24
231 232 4.892934 TCATGGGCTGGTTTAAATGATACC 59.107 41.667 0.00 0.00 0.00 2.73
232 233 4.323569 TGGGCTGGTTTAAATGATACCA 57.676 40.909 0.00 0.00 39.53 3.25
233 234 4.678256 TGGGCTGGTTTAAATGATACCAA 58.322 39.130 0.00 0.00 41.15 3.67
234 235 4.464597 TGGGCTGGTTTAAATGATACCAAC 59.535 41.667 0.00 0.00 41.15 3.77
235 236 4.464597 GGGCTGGTTTAAATGATACCAACA 59.535 41.667 0.00 0.00 41.15 3.33
236 237 5.407502 GGCTGGTTTAAATGATACCAACAC 58.592 41.667 0.00 0.00 41.15 3.32
237 238 5.092781 GCTGGTTTAAATGATACCAACACG 58.907 41.667 0.00 0.00 41.15 4.49
238 239 5.335348 GCTGGTTTAAATGATACCAACACGT 60.335 40.000 0.00 0.00 41.15 4.49
239 240 6.128227 GCTGGTTTAAATGATACCAACACGTA 60.128 38.462 0.00 0.00 41.15 3.57
240 241 7.414762 GCTGGTTTAAATGATACCAACACGTAT 60.415 37.037 0.00 0.00 41.15 3.06
241 242 8.338072 TGGTTTAAATGATACCAACACGTATT 57.662 30.769 0.00 0.00 38.92 1.89
242 243 8.794553 TGGTTTAAATGATACCAACACGTATTT 58.205 29.630 0.00 0.00 38.92 1.40
243 244 9.628746 GGTTTAAATGATACCAACACGTATTTT 57.371 29.630 0.00 0.00 32.12 1.82
269 270 8.940768 TTATAAAGTAAATGCTGCCAAAATCC 57.059 30.769 0.00 0.00 0.00 3.01
270 271 5.488262 AAAGTAAATGCTGCCAAAATCCT 57.512 34.783 0.00 0.00 0.00 3.24
271 272 6.603940 AAAGTAAATGCTGCCAAAATCCTA 57.396 33.333 0.00 0.00 0.00 2.94
272 273 5.582689 AGTAAATGCTGCCAAAATCCTAC 57.417 39.130 0.00 0.00 0.00 3.18
273 274 3.508744 AAATGCTGCCAAAATCCTACG 57.491 42.857 0.00 0.00 0.00 3.51
274 275 2.418368 ATGCTGCCAAAATCCTACGA 57.582 45.000 0.00 0.00 0.00 3.43
275 276 2.192664 TGCTGCCAAAATCCTACGAA 57.807 45.000 0.00 0.00 0.00 3.85
276 277 2.722094 TGCTGCCAAAATCCTACGAAT 58.278 42.857 0.00 0.00 0.00 3.34
277 278 2.682856 TGCTGCCAAAATCCTACGAATC 59.317 45.455 0.00 0.00 0.00 2.52
278 279 2.945668 GCTGCCAAAATCCTACGAATCT 59.054 45.455 0.00 0.00 0.00 2.40
279 280 4.127171 GCTGCCAAAATCCTACGAATCTA 58.873 43.478 0.00 0.00 0.00 1.98
280 281 4.212214 GCTGCCAAAATCCTACGAATCTAG 59.788 45.833 0.00 0.00 0.00 2.43
281 282 5.353394 TGCCAAAATCCTACGAATCTAGT 57.647 39.130 0.00 0.00 0.00 2.57
282 283 6.474140 TGCCAAAATCCTACGAATCTAGTA 57.526 37.500 0.00 0.00 0.00 1.82
283 284 6.278363 TGCCAAAATCCTACGAATCTAGTAC 58.722 40.000 0.00 0.00 0.00 2.73
284 285 5.401674 GCCAAAATCCTACGAATCTAGTACG 59.598 44.000 0.00 0.00 0.00 3.67
285 286 5.919141 CCAAAATCCTACGAATCTAGTACGG 59.081 44.000 0.00 0.00 0.00 4.02
286 287 6.460676 CCAAAATCCTACGAATCTAGTACGGT 60.461 42.308 0.00 0.00 0.00 4.83
287 288 5.938438 AATCCTACGAATCTAGTACGGTC 57.062 43.478 0.00 0.00 0.00 4.79
288 289 3.384668 TCCTACGAATCTAGTACGGTCG 58.615 50.000 0.00 0.00 37.71 4.79
289 290 2.096516 CCTACGAATCTAGTACGGTCGC 60.097 54.545 0.00 0.00 35.15 5.19
290 291 0.302890 ACGAATCTAGTACGGTCGCG 59.697 55.000 0.00 0.00 35.15 5.87
291 292 0.302890 CGAATCTAGTACGGTCGCGT 59.697 55.000 5.77 0.00 0.00 6.01
292 293 1.739618 GAATCTAGTACGGTCGCGTG 58.260 55.000 5.77 0.00 0.00 5.34
293 294 1.328680 GAATCTAGTACGGTCGCGTGA 59.671 52.381 5.77 0.00 0.00 4.35
294 295 0.935898 ATCTAGTACGGTCGCGTGAG 59.064 55.000 5.77 0.42 0.00 3.51
295 296 1.086067 TCTAGTACGGTCGCGTGAGG 61.086 60.000 5.77 0.00 0.00 3.86
296 297 1.364626 CTAGTACGGTCGCGTGAGGT 61.365 60.000 5.77 3.14 0.00 3.85
297 298 0.108377 TAGTACGGTCGCGTGAGGTA 60.108 55.000 5.77 2.04 0.00 3.08
298 299 1.061570 GTACGGTCGCGTGAGGTAG 59.938 63.158 5.77 0.00 0.00 3.18
299 300 1.079197 TACGGTCGCGTGAGGTAGA 60.079 57.895 5.77 0.00 0.00 2.59
300 301 1.361668 TACGGTCGCGTGAGGTAGAC 61.362 60.000 5.77 0.00 0.00 2.59
301 302 2.488820 GGTCGCGTGAGGTAGACC 59.511 66.667 5.77 0.00 45.07 3.85
321 322 3.563223 CCTAGATAGGGTCACGGAAAGA 58.437 50.000 0.00 0.00 39.86 2.52
322 323 3.318557 CCTAGATAGGGTCACGGAAAGAC 59.681 52.174 0.00 0.00 39.86 3.01
323 324 1.749634 AGATAGGGTCACGGAAAGACG 59.250 52.381 0.00 0.00 36.87 4.18
339 340 4.722361 AAGACGTTCTTAGAGGCTAAGG 57.278 45.455 12.72 2.18 34.42 2.69
344 345 4.282703 ACGTTCTTAGAGGCTAAGGAAACA 59.717 41.667 12.72 0.00 0.00 2.83
346 347 5.548406 GTTCTTAGAGGCTAAGGAAACACA 58.452 41.667 12.72 0.00 0.00 3.72
352 353 4.822350 AGAGGCTAAGGAAACACAAGAAAC 59.178 41.667 0.00 0.00 0.00 2.78
358 359 6.293462 GCTAAGGAAACACAAGAAACTAGTGG 60.293 42.308 0.00 0.00 37.58 4.00
360 361 5.751586 AGGAAACACAAGAAACTAGTGGAA 58.248 37.500 0.00 0.00 37.58 3.53
363 364 6.918022 GGAAACACAAGAAACTAGTGGAATTG 59.082 38.462 0.00 2.62 37.58 2.32
365 366 4.278419 ACACAAGAAACTAGTGGAATTGGC 59.722 41.667 0.00 0.00 37.58 4.52
366 367 4.520492 CACAAGAAACTAGTGGAATTGGCT 59.480 41.667 0.00 0.00 0.00 4.75
368 369 5.010012 ACAAGAAACTAGTGGAATTGGCTTG 59.990 40.000 0.00 0.00 36.15 4.01
369 370 3.507622 AGAAACTAGTGGAATTGGCTTGC 59.492 43.478 0.00 0.00 0.00 4.01
370 371 1.453155 ACTAGTGGAATTGGCTTGCG 58.547 50.000 0.00 0.00 0.00 4.85
371 372 0.734889 CTAGTGGAATTGGCTTGCGG 59.265 55.000 0.00 0.00 0.00 5.69
372 373 0.037590 TAGTGGAATTGGCTTGCGGT 59.962 50.000 0.00 0.00 0.00 5.68
373 374 1.080569 GTGGAATTGGCTTGCGGTG 60.081 57.895 0.00 0.00 0.00 4.94
375 376 2.125952 GAATTGGCTTGCGGTGGC 60.126 61.111 0.00 0.00 40.52 5.01
376 377 3.969642 GAATTGGCTTGCGGTGGCG 62.970 63.158 0.00 0.00 44.10 5.69
394 405 1.278238 CGCTAGAAGCCAAGTTACGG 58.722 55.000 0.00 0.00 38.18 4.02
410 421 2.656560 ACGGAAGGAGAAGATTGTCG 57.343 50.000 0.00 0.00 0.00 4.35
430 441 6.270064 TGTCGTATCAACCACTGTACATATG 58.730 40.000 0.00 0.00 0.00 1.78
439 450 5.208890 ACCACTGTACATATGCTTAGAGGA 58.791 41.667 17.71 0.00 0.00 3.71
450 461 8.494433 ACATATGCTTAGAGGATAAGAAAACCA 58.506 33.333 1.58 0.00 32.25 3.67
451 462 9.512588 CATATGCTTAGAGGATAAGAAAACCAT 57.487 33.333 0.00 0.00 32.25 3.55
456 467 9.267084 GCTTAGAGGATAAGAAAACCATAGAAG 57.733 37.037 0.00 0.00 0.00 2.85
459 470 8.028652 AGAGGATAAGAAAACCATAGAAGAGG 57.971 38.462 0.00 0.00 0.00 3.69
461 472 5.765677 GGATAAGAAAACCATAGAAGAGGGC 59.234 44.000 0.00 0.00 29.31 5.19
462 473 3.653835 AGAAAACCATAGAAGAGGGCC 57.346 47.619 0.00 0.00 29.31 5.80
464 475 3.054065 AGAAAACCATAGAAGAGGGCCAG 60.054 47.826 6.18 0.00 29.31 4.85
479 490 2.864114 CCAGATTGGCTGTCACTGG 58.136 57.895 4.74 4.74 43.33 4.00
480 491 1.310933 CCAGATTGGCTGTCACTGGC 61.311 60.000 6.04 0.70 43.33 4.85
481 492 0.607217 CAGATTGGCTGTCACTGGCA 60.607 55.000 6.86 6.86 39.85 4.92
484 495 0.692476 ATTGGCTGTCACTGGCACTA 59.308 50.000 10.69 0.00 37.56 2.74
485 496 0.692476 TTGGCTGTCACTGGCACTAT 59.308 50.000 10.69 0.00 37.56 2.12
486 497 1.567357 TGGCTGTCACTGGCACTATA 58.433 50.000 6.86 0.00 33.54 1.31
489 500 1.482593 GCTGTCACTGGCACTATAGGT 59.517 52.381 4.43 0.00 0.00 3.08
529 548 1.473965 CCCAGTCATCCATCCTCGTTG 60.474 57.143 0.00 0.00 0.00 4.10
537 556 2.047274 ATCCTCGTTGGGCACACG 60.047 61.111 0.00 0.00 36.20 4.49
541 560 4.210093 TCGTTGGGCACACGACGT 62.210 61.111 12.58 0.00 45.90 4.34
558 591 1.135315 GTGCCACGCATGCTAACAG 59.865 57.895 17.13 1.61 41.91 3.16
566 599 0.025513 GCATGCTAACAGACGCTTCG 59.974 55.000 11.37 0.00 0.00 3.79
567 600 0.647410 CATGCTAACAGACGCTTCGG 59.353 55.000 0.00 0.00 0.00 4.30
571 604 0.797249 CTAACAGACGCTTCGGTCGG 60.797 60.000 0.00 0.00 41.81 4.79
616 650 1.078708 CCCAACACTTACCCGCGAT 60.079 57.895 8.23 0.00 0.00 4.58
619 653 1.434555 CAACACTTACCCGCGATGAA 58.565 50.000 8.23 0.00 0.00 2.57
622 656 1.278238 CACTTACCCGCGATGAAGAC 58.722 55.000 8.23 0.00 0.00 3.01
644 682 4.659172 CCAGGCAGGCGAACCCAA 62.659 66.667 0.00 0.00 36.11 4.12
650 688 1.898574 CAGGCGAACCCAAGCAAGT 60.899 57.895 0.00 0.00 36.11 3.16
871 995 1.076727 CCTTCCCTGAAACCCACCC 59.923 63.158 0.00 0.00 0.00 4.61
872 996 1.076727 CTTCCCTGAAACCCACCCC 59.923 63.158 0.00 0.00 0.00 4.95
905 1029 3.244457 CCCCACTATTTATTCCCTCGTCC 60.244 52.174 0.00 0.00 0.00 4.79
909 1033 1.901648 ATTTATTCCCTCGTCCCCCA 58.098 50.000 0.00 0.00 0.00 4.96
914 1038 4.016706 CCCTCGTCCCCCACACAC 62.017 72.222 0.00 0.00 0.00 3.82
915 1039 4.016706 CCTCGTCCCCCACACACC 62.017 72.222 0.00 0.00 0.00 4.16
1026 1185 3.362797 CACCACCAGCAGCAGCAG 61.363 66.667 3.17 0.00 45.49 4.24
1164 1323 4.864334 CTGCTCATGGACCCGGCC 62.864 72.222 0.00 0.00 0.00 6.13
1167 1326 3.866582 CTCATGGACCCGGCCTCC 61.867 72.222 0.00 9.08 0.00 4.30
1405 1564 2.828520 CACTTCCTCTTCACCAGCTAGA 59.171 50.000 0.00 0.00 0.00 2.43
1406 1565 3.450457 CACTTCCTCTTCACCAGCTAGAT 59.550 47.826 0.00 0.00 0.00 1.98
1408 1567 4.161377 ACTTCCTCTTCACCAGCTAGATTC 59.839 45.833 0.00 0.00 0.00 2.52
1413 1572 1.227674 CACCAGCTAGATTCCGGCC 60.228 63.158 0.00 0.00 0.00 6.13
1449 1620 9.884465 AATTAATCTTCTTCTTCTTCGTTGTTG 57.116 29.630 0.00 0.00 0.00 3.33
1487 1658 4.047822 GCTGTTCATAGAGTCAGGATTCG 58.952 47.826 0.00 0.00 0.00 3.34
1592 1772 4.031426 CGACATAAGCTTCTACCGTTTCAC 59.969 45.833 0.00 0.00 0.00 3.18
1612 1795 0.457853 CACATGCCACATTGCTCTGC 60.458 55.000 0.00 0.00 0.00 4.26
1651 1834 4.413495 GAACAAATTCGAAATCCGTCCA 57.587 40.909 0.00 0.00 39.75 4.02
1660 1843 4.679662 TCGAAATCCGTCCATCTCTTTAC 58.320 43.478 0.00 0.00 39.75 2.01
1673 1856 3.236816 TCTCTTTACGCGAAACCGTTAG 58.763 45.455 15.93 0.00 42.20 2.34
1690 1873 4.191662 GTTAGGAACGTTGAACAGTGTG 57.808 45.455 5.00 0.00 0.00 3.82
1693 1876 2.004017 GGAACGTTGAACAGTGTGTGA 58.996 47.619 5.00 0.00 0.00 3.58
1710 1894 0.178950 TGACAGAGAGCCAGAGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
1714 1898 0.114168 AGAGAGCCAGAGGTGTGTCT 59.886 55.000 0.00 0.00 0.00 3.41
1720 1904 0.833834 CCAGAGGTGTGTCTCCCACT 60.834 60.000 0.00 0.00 44.81 4.00
1766 1950 6.699204 TCTCTGAATTAATCGACATGAGCTTC 59.301 38.462 0.00 0.00 0.00 3.86
1775 1959 3.918591 TCGACATGAGCTTCTACGTTTTC 59.081 43.478 0.00 0.00 0.00 2.29
1776 1960 3.673338 CGACATGAGCTTCTACGTTTTCA 59.327 43.478 0.00 0.00 0.00 2.69
1778 1962 5.344207 ACATGAGCTTCTACGTTTTCAAC 57.656 39.130 0.00 0.00 0.00 3.18
1779 1963 4.814234 ACATGAGCTTCTACGTTTTCAACA 59.186 37.500 0.00 0.00 0.00 3.33
1780 1964 5.295787 ACATGAGCTTCTACGTTTTCAACAA 59.704 36.000 0.00 0.00 0.00 2.83
1788 1992 5.507077 TCTACGTTTTCAACAAGACATTGC 58.493 37.500 0.00 0.00 40.27 3.56
1799 2003 1.661463 AGACATTGCCCCTTCTCTGA 58.339 50.000 0.00 0.00 0.00 3.27
1806 2010 3.814504 TGCCCCTTCTCTGATTCTTTT 57.185 42.857 0.00 0.00 0.00 2.27
1807 2011 4.118168 TGCCCCTTCTCTGATTCTTTTT 57.882 40.909 0.00 0.00 0.00 1.94
1811 2015 5.105957 GCCCCTTCTCTGATTCTTTTTCTTC 60.106 44.000 0.00 0.00 0.00 2.87
1812 2016 5.417266 CCCCTTCTCTGATTCTTTTTCTTCC 59.583 44.000 0.00 0.00 0.00 3.46
1836 2040 1.589414 AATGGCCCTTCTCTGCTACT 58.411 50.000 0.00 0.00 0.00 2.57
1839 2043 1.273041 TGGCCCTTCTCTGCTACTACA 60.273 52.381 0.00 0.00 0.00 2.74
1840 2044 1.137282 GGCCCTTCTCTGCTACTACAC 59.863 57.143 0.00 0.00 0.00 2.90
1843 2047 2.159366 CCCTTCTCTGCTACTACACACG 60.159 54.545 0.00 0.00 0.00 4.49
1844 2048 2.747989 CCTTCTCTGCTACTACACACGA 59.252 50.000 0.00 0.00 0.00 4.35
1847 2051 3.143728 TCTCTGCTACTACACACGAACA 58.856 45.455 0.00 0.00 0.00 3.18
1849 2053 4.217767 TCTCTGCTACTACACACGAACAAT 59.782 41.667 0.00 0.00 0.00 2.71
1850 2054 4.878439 TCTGCTACTACACACGAACAATT 58.122 39.130 0.00 0.00 0.00 2.32
1854 2058 5.176774 TGCTACTACACACGAACAATTGAAG 59.823 40.000 13.59 5.29 0.00 3.02
1855 2059 4.468095 ACTACACACGAACAATTGAAGC 57.532 40.909 13.59 0.00 0.00 3.86
1856 2060 2.383298 ACACACGAACAATTGAAGCG 57.617 45.000 13.59 14.07 0.00 4.68
1858 2062 0.384230 ACACGAACAATTGAAGCGCG 60.384 50.000 13.59 0.00 0.00 6.86
1859 2063 0.384230 CACGAACAATTGAAGCGCGT 60.384 50.000 13.59 10.60 0.00 6.01
1861 2065 0.789383 CGAACAATTGAAGCGCGTCC 60.789 55.000 20.62 5.34 0.00 4.79
1863 2067 1.503818 AACAATTGAAGCGCGTCCGT 61.504 50.000 20.62 9.56 36.67 4.69
1864 2068 1.225745 CAATTGAAGCGCGTCCGTC 60.226 57.895 20.62 6.05 36.67 4.79
1866 2070 0.949105 AATTGAAGCGCGTCCGTCTT 60.949 50.000 20.62 0.94 34.93 3.01
1867 2071 0.949105 ATTGAAGCGCGTCCGTCTTT 60.949 50.000 20.62 0.00 33.31 2.52
1868 2072 1.155424 TTGAAGCGCGTCCGTCTTTT 61.155 50.000 20.62 0.00 33.31 2.27
1869 2073 1.130009 GAAGCGCGTCCGTCTTTTC 59.870 57.895 12.67 0.00 33.31 2.29
1870 2074 1.282930 GAAGCGCGTCCGTCTTTTCT 61.283 55.000 12.67 0.00 33.31 2.52
1871 2075 1.557443 AAGCGCGTCCGTCTTTTCTG 61.557 55.000 8.43 0.00 36.67 3.02
1872 2076 2.308039 GCGCGTCCGTCTTTTCTGT 61.308 57.895 8.43 0.00 36.67 3.41
1873 2077 1.487231 CGCGTCCGTCTTTTCTGTG 59.513 57.895 0.00 0.00 0.00 3.66
1874 2078 0.937699 CGCGTCCGTCTTTTCTGTGA 60.938 55.000 0.00 0.00 0.00 3.58
1875 2079 1.214367 GCGTCCGTCTTTTCTGTGAA 58.786 50.000 0.00 0.00 0.00 3.18
1876 2080 1.595794 GCGTCCGTCTTTTCTGTGAAA 59.404 47.619 0.00 0.00 0.00 2.69
1877 2081 2.599142 GCGTCCGTCTTTTCTGTGAAAC 60.599 50.000 0.00 0.00 37.35 2.78
1878 2082 2.033151 CGTCCGTCTTTTCTGTGAAACC 60.033 50.000 0.00 0.00 34.36 3.27
1879 2083 2.033151 GTCCGTCTTTTCTGTGAAACCG 60.033 50.000 0.00 0.00 34.36 4.44
1880 2084 1.937899 CCGTCTTTTCTGTGAAACCGT 59.062 47.619 0.00 0.00 34.36 4.83
1881 2085 2.353579 CCGTCTTTTCTGTGAAACCGTT 59.646 45.455 0.00 0.00 34.36 4.44
1882 2086 3.556775 CCGTCTTTTCTGTGAAACCGTTA 59.443 43.478 0.00 0.00 34.36 3.18
1883 2087 4.212636 CCGTCTTTTCTGTGAAACCGTTAT 59.787 41.667 0.00 0.00 34.36 1.89
1884 2088 5.137403 CGTCTTTTCTGTGAAACCGTTATG 58.863 41.667 0.00 0.00 34.36 1.90
1885 2089 5.050634 CGTCTTTTCTGTGAAACCGTTATGA 60.051 40.000 0.00 0.00 34.36 2.15
1886 2090 6.363473 GTCTTTTCTGTGAAACCGTTATGAG 58.637 40.000 0.00 0.00 34.36 2.90
1887 2091 4.742438 TTTCTGTGAAACCGTTATGAGC 57.258 40.909 0.00 0.00 34.36 4.26
1888 2092 2.333926 TCTGTGAAACCGTTATGAGCG 58.666 47.619 0.00 0.00 34.36 5.03
1889 2093 2.066262 CTGTGAAACCGTTATGAGCGT 58.934 47.619 0.00 0.00 34.36 5.07
1890 2094 2.063266 TGTGAAACCGTTATGAGCGTC 58.937 47.619 0.00 0.00 34.36 5.19
1891 2095 1.058695 GTGAAACCGTTATGAGCGTCG 59.941 52.381 0.00 0.00 0.00 5.12
1892 2096 1.068402 TGAAACCGTTATGAGCGTCGA 60.068 47.619 0.00 0.00 0.00 4.20
1893 2097 1.987770 GAAACCGTTATGAGCGTCGAA 59.012 47.619 0.00 0.00 0.00 3.71
1894 2098 1.343506 AACCGTTATGAGCGTCGAAC 58.656 50.000 0.00 0.00 0.00 3.95
1895 2099 0.241749 ACCGTTATGAGCGTCGAACA 59.758 50.000 0.00 0.00 0.00 3.18
1896 2100 0.914551 CCGTTATGAGCGTCGAACAG 59.085 55.000 0.00 0.00 0.00 3.16
1897 2101 0.294887 CGTTATGAGCGTCGAACAGC 59.705 55.000 0.00 0.00 0.00 4.40
1898 2102 0.294887 GTTATGAGCGTCGAACAGCG 59.705 55.000 0.00 0.00 42.69 5.18
1899 2103 0.109458 TTATGAGCGTCGAACAGCGT 60.109 50.000 0.00 0.00 41.80 5.07
1900 2104 0.796870 TATGAGCGTCGAACAGCGTG 60.797 55.000 0.00 0.00 41.80 5.34
1901 2105 4.122515 GAGCGTCGAACAGCGTGC 62.123 66.667 0.00 0.00 41.80 5.34
1906 2110 4.316571 TCGAACAGCGTGCGACGA 62.317 61.111 11.94 0.00 46.05 4.20
1912 2116 3.112075 AGCGTGCGACGACATTGG 61.112 61.111 11.94 0.00 46.05 3.16
1915 2119 3.629491 CGTGCGACGACATTGGCAC 62.629 63.158 0.00 5.01 46.05 5.01
1916 2120 3.410516 TGCGACGACATTGGCACG 61.411 61.111 0.00 2.37 0.00 5.34
1917 2121 4.147322 GCGACGACATTGGCACGG 62.147 66.667 0.00 0.00 0.00 4.94
1919 2123 3.047280 GACGACATTGGCACGGCA 61.047 61.111 0.00 0.00 35.00 5.69
1966 2170 2.887568 CGCAGTCGGTCCATCAGC 60.888 66.667 0.00 0.00 0.00 4.26
1980 2184 1.015109 ATCAGCAAGATGAAGCAGCG 58.985 50.000 0.00 0.00 35.06 5.18
1981 2185 0.321034 TCAGCAAGATGAAGCAGCGT 60.321 50.000 0.00 0.00 0.00 5.07
1993 2197 3.261216 CAGCGTGTGTGCGTGTCA 61.261 61.111 0.00 0.00 40.67 3.58
2005 2209 1.557443 GCGTGTCACACCGGAAGAAG 61.557 60.000 9.46 0.00 0.00 2.85
2027 2231 3.020984 GCCCAAATCCTTTCACCGATTA 58.979 45.455 0.00 0.00 0.00 1.75
2029 2233 4.270008 CCCAAATCCTTTCACCGATTACT 58.730 43.478 0.00 0.00 0.00 2.24
2030 2234 4.096382 CCCAAATCCTTTCACCGATTACTG 59.904 45.833 0.00 0.00 0.00 2.74
2032 2236 2.396590 TCCTTTCACCGATTACTGGC 57.603 50.000 0.00 0.00 0.00 4.85
2034 2238 2.039216 TCCTTTCACCGATTACTGGCAA 59.961 45.455 0.00 0.00 0.00 4.52
2035 2239 2.420022 CCTTTCACCGATTACTGGCAAG 59.580 50.000 0.00 0.00 0.00 4.01
2036 2240 3.334691 CTTTCACCGATTACTGGCAAGA 58.665 45.455 0.00 0.00 0.00 3.02
2038 2242 2.695359 TCACCGATTACTGGCAAGAAC 58.305 47.619 0.00 0.00 0.00 3.01
2064 2315 0.598562 GAAGAGTGGCTGACGACAGA 59.401 55.000 19.07 0.00 46.03 3.41
2065 2316 0.600557 AAGAGTGGCTGACGACAGAG 59.399 55.000 19.07 0.00 46.03 3.35
2075 2326 0.315568 GACGACAGAGGTGCAGACTT 59.684 55.000 0.00 0.00 0.00 3.01
2128 2449 3.128068 CGTAATCGGTCGATCCATCCATA 59.872 47.826 6.32 0.00 33.08 2.74
2136 2457 5.067283 CGGTCGATCCATCCATACATACATA 59.933 44.000 0.00 0.00 35.57 2.29
2209 2530 3.120477 TGAAATTCGGTGCAATACGTCAC 60.120 43.478 0.00 0.00 0.00 3.67
2274 2629 4.980805 GTGGCGCCGAGGTCAACA 62.981 66.667 23.90 0.00 0.00 3.33
2275 2630 4.680237 TGGCGCCGAGGTCAACAG 62.680 66.667 23.90 0.00 0.00 3.16
2322 2677 1.761244 CTCGTGAAGCACAACGCACA 61.761 55.000 0.00 0.00 46.13 4.57
2324 2679 1.651132 GTGAAGCACAACGCACACG 60.651 57.895 0.00 0.00 46.13 4.49
2325 2680 2.722188 GAAGCACAACGCACACGC 60.722 61.111 0.00 0.00 46.13 5.34
2326 2681 3.447634 GAAGCACAACGCACACGCA 62.448 57.895 0.00 0.00 46.13 5.24
2327 2682 3.733190 AAGCACAACGCACACGCAC 62.733 57.895 0.00 0.00 46.13 5.34
2335 2690 4.696172 GCACACGCACGCACGTAC 62.696 66.667 2.78 0.00 46.34 3.67
2336 2691 4.389135 CACACGCACGCACGTACG 62.389 66.667 15.01 15.01 46.34 3.67
2344 2699 2.023223 ACGCACGTACGCCGAATTT 61.023 52.632 28.05 9.23 40.70 1.82
2345 2700 1.295645 CGCACGTACGCCGAATTTC 60.296 57.895 20.08 0.00 40.70 2.17
2358 2713 2.250188 CGAATTTCATTCAACACGGCC 58.750 47.619 0.00 0.00 39.22 6.13
2361 2716 4.662145 GAATTTCATTCAACACGGCCTAG 58.338 43.478 0.00 0.00 39.09 3.02
2380 2739 5.295950 CCTAGATGTCAATTCCTGCTACTG 58.704 45.833 0.00 0.00 0.00 2.74
2400 2759 1.079819 TAGTGCTCCGTTCAGCTGC 60.080 57.895 9.47 0.00 40.39 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.803426 GGACTGCGGTGGCTCTCG 62.803 72.222 0.80 0.00 40.82 4.04
4 5 2.731691 TTTGGACTGCGGTGGCTCTC 62.732 60.000 0.80 0.00 40.82 3.20
5 6 2.129555 ATTTGGACTGCGGTGGCTCT 62.130 55.000 0.80 0.00 40.82 4.09
6 7 1.244019 AATTTGGACTGCGGTGGCTC 61.244 55.000 0.80 0.00 40.82 4.70
7 8 1.228552 AATTTGGACTGCGGTGGCT 60.229 52.632 0.80 0.00 40.82 4.75
8 9 1.080569 CAATTTGGACTGCGGTGGC 60.081 57.895 0.80 0.00 40.52 5.01
9 10 1.080569 GCAATTTGGACTGCGGTGG 60.081 57.895 0.80 0.00 0.00 4.61
10 11 1.164411 TAGCAATTTGGACTGCGGTG 58.836 50.000 0.80 0.00 43.51 4.94
11 12 2.128771 ATAGCAATTTGGACTGCGGT 57.871 45.000 0.00 0.00 43.51 5.68
12 13 2.801063 CAATAGCAATTTGGACTGCGG 58.199 47.619 0.00 0.00 43.51 5.69
13 14 2.187707 GCAATAGCAATTTGGACTGCG 58.812 47.619 0.00 0.00 43.51 5.18
25 26 0.747644 CCATCGTGGGTGCAATAGCA 60.748 55.000 0.00 0.00 40.61 3.49
26 27 0.748005 ACCATCGTGGGTGCAATAGC 60.748 55.000 8.57 0.00 43.37 2.97
27 28 3.476740 ACCATCGTGGGTGCAATAG 57.523 52.632 8.57 0.00 43.37 1.73
34 35 2.751436 GCATGCACCATCGTGGGT 60.751 61.111 14.21 2.35 43.37 4.51
35 36 3.520862 GGCATGCACCATCGTGGG 61.521 66.667 21.36 1.74 43.37 4.61
36 37 2.438975 AGGCATGCACCATCGTGG 60.439 61.111 21.36 2.92 45.02 4.94
37 38 1.307355 TTGAGGCATGCACCATCGTG 61.307 55.000 21.36 0.00 43.35 4.35
38 39 1.002257 TTGAGGCATGCACCATCGT 60.002 52.632 21.36 0.00 0.00 3.73
39 40 1.307355 TGTTGAGGCATGCACCATCG 61.307 55.000 21.36 0.00 0.00 3.84
40 41 0.889994 TTGTTGAGGCATGCACCATC 59.110 50.000 21.36 14.82 0.00 3.51
41 42 0.604578 GTTGTTGAGGCATGCACCAT 59.395 50.000 21.36 1.34 0.00 3.55
42 43 0.467844 AGTTGTTGAGGCATGCACCA 60.468 50.000 21.36 13.49 0.00 4.17
43 44 0.242017 GAGTTGTTGAGGCATGCACC 59.758 55.000 21.36 10.81 0.00 5.01
44 45 0.110056 CGAGTTGTTGAGGCATGCAC 60.110 55.000 21.36 13.34 0.00 4.57
45 46 1.236616 CCGAGTTGTTGAGGCATGCA 61.237 55.000 21.36 0.00 0.00 3.96
46 47 1.237285 ACCGAGTTGTTGAGGCATGC 61.237 55.000 9.90 9.90 0.00 4.06
47 48 0.518636 CACCGAGTTGTTGAGGCATG 59.481 55.000 0.00 0.00 0.00 4.06
48 49 0.108585 ACACCGAGTTGTTGAGGCAT 59.891 50.000 0.00 0.00 0.00 4.40
49 50 0.107410 AACACCGAGTTGTTGAGGCA 60.107 50.000 0.00 0.00 38.31 4.75
50 51 2.702847 AACACCGAGTTGTTGAGGC 58.297 52.632 0.00 0.00 38.31 4.70
69 70 3.857038 TTATGAGGGGACGGCGGC 61.857 66.667 13.24 8.60 0.00 6.53
70 71 2.108362 GTTATGAGGGGACGGCGG 59.892 66.667 13.24 0.00 0.00 6.13
71 72 1.520787 GTGTTATGAGGGGACGGCG 60.521 63.158 4.80 4.80 0.00 6.46
72 73 1.153229 GGTGTTATGAGGGGACGGC 60.153 63.158 0.00 0.00 0.00 5.68
73 74 0.178068 CTGGTGTTATGAGGGGACGG 59.822 60.000 0.00 0.00 0.00 4.79
74 75 0.902531 ACTGGTGTTATGAGGGGACG 59.097 55.000 0.00 0.00 0.00 4.79
75 76 1.209747 GGACTGGTGTTATGAGGGGAC 59.790 57.143 0.00 0.00 0.00 4.46
76 77 1.080498 AGGACTGGTGTTATGAGGGGA 59.920 52.381 0.00 0.00 0.00 4.81
77 78 1.486726 GAGGACTGGTGTTATGAGGGG 59.513 57.143 0.00 0.00 0.00 4.79
78 79 1.137086 CGAGGACTGGTGTTATGAGGG 59.863 57.143 0.00 0.00 0.00 4.30
79 80 1.471676 GCGAGGACTGGTGTTATGAGG 60.472 57.143 0.00 0.00 0.00 3.86
80 81 1.471676 GGCGAGGACTGGTGTTATGAG 60.472 57.143 0.00 0.00 0.00 2.90
81 82 0.535335 GGCGAGGACTGGTGTTATGA 59.465 55.000 0.00 0.00 0.00 2.15
82 83 0.537188 AGGCGAGGACTGGTGTTATG 59.463 55.000 0.00 0.00 0.00 1.90
83 84 1.755380 GTAGGCGAGGACTGGTGTTAT 59.245 52.381 0.00 0.00 0.00 1.89
84 85 1.180029 GTAGGCGAGGACTGGTGTTA 58.820 55.000 0.00 0.00 0.00 2.41
85 86 0.830444 TGTAGGCGAGGACTGGTGTT 60.830 55.000 0.00 0.00 0.00 3.32
86 87 1.228769 TGTAGGCGAGGACTGGTGT 60.229 57.895 0.00 0.00 0.00 4.16
87 88 1.215647 GTGTAGGCGAGGACTGGTG 59.784 63.158 0.00 0.00 0.00 4.17
88 89 0.614979 ATGTGTAGGCGAGGACTGGT 60.615 55.000 0.00 0.00 0.00 4.00
89 90 1.067212 GTATGTGTAGGCGAGGACTGG 59.933 57.143 0.00 0.00 0.00 4.00
90 91 1.749063 TGTATGTGTAGGCGAGGACTG 59.251 52.381 0.00 0.00 0.00 3.51
91 92 2.139323 TGTATGTGTAGGCGAGGACT 57.861 50.000 0.00 0.00 0.00 3.85
92 93 2.953466 TTGTATGTGTAGGCGAGGAC 57.047 50.000 0.00 0.00 0.00 3.85
93 94 3.965379 TTTTGTATGTGTAGGCGAGGA 57.035 42.857 0.00 0.00 0.00 3.71
112 113 0.471780 CCCTTCCCCTGGCTGTTTTT 60.472 55.000 0.00 0.00 0.00 1.94
113 114 1.156095 CCCTTCCCCTGGCTGTTTT 59.844 57.895 0.00 0.00 0.00 2.43
114 115 2.854076 CCCTTCCCCTGGCTGTTT 59.146 61.111 0.00 0.00 0.00 2.83
115 116 3.268032 CCCCTTCCCCTGGCTGTT 61.268 66.667 0.00 0.00 0.00 3.16
118 119 4.301662 TTCCCCCTTCCCCTGGCT 62.302 66.667 0.00 0.00 0.00 4.75
119 120 3.744155 CTTCCCCCTTCCCCTGGC 61.744 72.222 0.00 0.00 0.00 4.85
120 121 3.023735 CCTTCCCCCTTCCCCTGG 61.024 72.222 0.00 0.00 0.00 4.45
121 122 3.023735 CCCTTCCCCCTTCCCCTG 61.024 72.222 0.00 0.00 0.00 4.45
122 123 4.387765 CCCCTTCCCCCTTCCCCT 62.388 72.222 0.00 0.00 0.00 4.79
125 126 2.106923 AAAAGCCCCTTCCCCCTTCC 62.107 60.000 0.00 0.00 0.00 3.46
126 127 0.904865 CAAAAGCCCCTTCCCCCTTC 60.905 60.000 0.00 0.00 0.00 3.46
127 128 1.158466 CAAAAGCCCCTTCCCCCTT 59.842 57.895 0.00 0.00 0.00 3.95
128 129 2.861730 CAAAAGCCCCTTCCCCCT 59.138 61.111 0.00 0.00 0.00 4.79
129 130 3.003173 GCAAAAGCCCCTTCCCCC 61.003 66.667 0.00 0.00 0.00 5.40
130 131 3.381983 CGCAAAAGCCCCTTCCCC 61.382 66.667 0.00 0.00 0.00 4.81
131 132 2.600470 ACGCAAAAGCCCCTTCCC 60.600 61.111 0.00 0.00 0.00 3.97
132 133 1.866853 CTGACGCAAAAGCCCCTTCC 61.867 60.000 0.00 0.00 0.00 3.46
133 134 1.581447 CTGACGCAAAAGCCCCTTC 59.419 57.895 0.00 0.00 0.00 3.46
134 135 2.564721 GCTGACGCAAAAGCCCCTT 61.565 57.895 0.00 0.00 35.78 3.95
135 136 2.985847 GCTGACGCAAAAGCCCCT 60.986 61.111 0.00 0.00 35.78 4.79
139 140 1.081840 GACTGGCTGACGCAAAAGC 60.082 57.895 0.00 0.00 38.10 3.51
140 141 0.662619 TTGACTGGCTGACGCAAAAG 59.337 50.000 0.00 0.00 38.10 2.27
141 142 1.098869 TTTGACTGGCTGACGCAAAA 58.901 45.000 0.00 0.00 38.10 2.44
142 143 1.317613 ATTTGACTGGCTGACGCAAA 58.682 45.000 0.00 6.37 38.10 3.68
143 144 2.177394 TATTTGACTGGCTGACGCAA 57.823 45.000 0.00 0.00 38.10 4.85
144 145 2.093500 AGATATTTGACTGGCTGACGCA 60.093 45.455 0.00 0.00 38.10 5.24
145 146 2.555199 AGATATTTGACTGGCTGACGC 58.445 47.619 0.00 0.00 0.00 5.19
146 147 6.851222 AAATAGATATTTGACTGGCTGACG 57.149 37.500 0.00 0.00 34.79 4.35
174 175 9.884465 CGAATTTCAAAGTTTTCTCTCACTATT 57.116 29.630 0.00 0.00 0.00 1.73
175 176 9.273016 TCGAATTTCAAAGTTTTCTCTCACTAT 57.727 29.630 0.00 0.00 0.00 2.12
176 177 8.657074 TCGAATTTCAAAGTTTTCTCTCACTA 57.343 30.769 0.00 0.00 0.00 2.74
177 178 7.495934 TCTCGAATTTCAAAGTTTTCTCTCACT 59.504 33.333 0.00 0.00 0.00 3.41
178 179 7.584485 GTCTCGAATTTCAAAGTTTTCTCTCAC 59.416 37.037 0.00 0.00 0.00 3.51
179 180 7.279981 TGTCTCGAATTTCAAAGTTTTCTCTCA 59.720 33.333 0.00 0.00 0.00 3.27
180 181 7.630924 TGTCTCGAATTTCAAAGTTTTCTCTC 58.369 34.615 0.00 0.00 0.00 3.20
181 182 7.495934 TCTGTCTCGAATTTCAAAGTTTTCTCT 59.504 33.333 0.00 0.00 0.00 3.10
182 183 7.630924 TCTGTCTCGAATTTCAAAGTTTTCTC 58.369 34.615 0.00 0.00 0.00 2.87
183 184 7.553881 TCTGTCTCGAATTTCAAAGTTTTCT 57.446 32.000 0.00 0.00 0.00 2.52
184 185 8.070171 TGATCTGTCTCGAATTTCAAAGTTTTC 58.930 33.333 0.00 0.00 0.00 2.29
185 186 7.930217 TGATCTGTCTCGAATTTCAAAGTTTT 58.070 30.769 0.00 0.00 0.00 2.43
186 187 7.496529 TGATCTGTCTCGAATTTCAAAGTTT 57.503 32.000 0.00 0.00 0.00 2.66
187 188 7.361542 CCATGATCTGTCTCGAATTTCAAAGTT 60.362 37.037 0.00 0.00 0.00 2.66
188 189 6.093219 CCATGATCTGTCTCGAATTTCAAAGT 59.907 38.462 0.00 0.00 0.00 2.66
189 190 6.457934 CCCATGATCTGTCTCGAATTTCAAAG 60.458 42.308 0.00 0.00 0.00 2.77
190 191 5.355071 CCCATGATCTGTCTCGAATTTCAAA 59.645 40.000 0.00 0.00 0.00 2.69
191 192 4.877823 CCCATGATCTGTCTCGAATTTCAA 59.122 41.667 0.00 0.00 0.00 2.69
192 193 4.445453 CCCATGATCTGTCTCGAATTTCA 58.555 43.478 0.00 0.00 0.00 2.69
193 194 3.249559 GCCCATGATCTGTCTCGAATTTC 59.750 47.826 0.00 0.00 0.00 2.17
194 195 3.118112 AGCCCATGATCTGTCTCGAATTT 60.118 43.478 0.00 0.00 0.00 1.82
195 196 2.437281 AGCCCATGATCTGTCTCGAATT 59.563 45.455 0.00 0.00 0.00 2.17
196 197 2.045524 AGCCCATGATCTGTCTCGAAT 58.954 47.619 0.00 0.00 0.00 3.34
197 198 1.137675 CAGCCCATGATCTGTCTCGAA 59.862 52.381 0.00 0.00 0.00 3.71
198 199 0.749049 CAGCCCATGATCTGTCTCGA 59.251 55.000 0.00 0.00 0.00 4.04
199 200 0.249784 CCAGCCCATGATCTGTCTCG 60.250 60.000 11.48 0.00 0.00 4.04
200 201 0.835941 ACCAGCCCATGATCTGTCTC 59.164 55.000 11.48 0.00 0.00 3.36
201 202 1.293062 AACCAGCCCATGATCTGTCT 58.707 50.000 11.48 0.00 0.00 3.41
202 203 2.134789 AAACCAGCCCATGATCTGTC 57.865 50.000 11.48 0.00 0.00 3.51
203 204 3.737559 TTAAACCAGCCCATGATCTGT 57.262 42.857 11.48 0.00 0.00 3.41
204 205 4.646040 TCATTTAAACCAGCCCATGATCTG 59.354 41.667 0.00 0.40 0.00 2.90
205 206 4.870636 TCATTTAAACCAGCCCATGATCT 58.129 39.130 0.00 0.00 0.00 2.75
206 207 5.796424 ATCATTTAAACCAGCCCATGATC 57.204 39.130 0.00 0.00 27.27 2.92
207 208 5.539955 GGTATCATTTAAACCAGCCCATGAT 59.460 40.000 0.00 0.00 35.87 2.45
208 209 4.892934 GGTATCATTTAAACCAGCCCATGA 59.107 41.667 0.00 0.00 33.28 3.07
209 210 4.648762 TGGTATCATTTAAACCAGCCCATG 59.351 41.667 0.00 0.00 38.36 3.66
210 211 4.877773 TGGTATCATTTAAACCAGCCCAT 58.122 39.130 0.00 0.00 38.36 4.00
211 212 4.323569 TGGTATCATTTAAACCAGCCCA 57.676 40.909 0.00 0.00 38.36 5.36
212 213 4.464597 TGTTGGTATCATTTAAACCAGCCC 59.535 41.667 7.42 0.00 43.82 5.19
213 214 5.407502 GTGTTGGTATCATTTAAACCAGCC 58.592 41.667 7.42 0.80 43.82 4.85
214 215 5.092781 CGTGTTGGTATCATTTAAACCAGC 58.907 41.667 3.81 3.81 43.82 4.85
215 216 6.249035 ACGTGTTGGTATCATTTAAACCAG 57.751 37.500 0.00 0.00 43.82 4.00
216 217 7.925043 ATACGTGTTGGTATCATTTAAACCA 57.075 32.000 0.00 0.00 41.47 3.67
217 218 9.628746 AAAATACGTGTTGGTATCATTTAAACC 57.371 29.630 0.00 0.00 32.07 3.27
243 244 9.377312 GGATTTTGGCAGCATTTACTTTATAAA 57.623 29.630 0.00 0.00 0.00 1.40
244 245 8.757877 AGGATTTTGGCAGCATTTACTTTATAA 58.242 29.630 0.00 0.00 0.00 0.98
245 246 8.305046 AGGATTTTGGCAGCATTTACTTTATA 57.695 30.769 0.00 0.00 0.00 0.98
246 247 7.186570 AGGATTTTGGCAGCATTTACTTTAT 57.813 32.000 0.00 0.00 0.00 1.40
247 248 6.603940 AGGATTTTGGCAGCATTTACTTTA 57.396 33.333 0.00 0.00 0.00 1.85
248 249 5.488262 AGGATTTTGGCAGCATTTACTTT 57.512 34.783 0.00 0.00 0.00 2.66
249 250 5.393027 CGTAGGATTTTGGCAGCATTTACTT 60.393 40.000 0.00 0.00 0.00 2.24
250 251 4.096382 CGTAGGATTTTGGCAGCATTTACT 59.904 41.667 0.00 0.00 0.00 2.24
251 252 4.095782 TCGTAGGATTTTGGCAGCATTTAC 59.904 41.667 0.00 0.00 0.00 2.01
252 253 4.265893 TCGTAGGATTTTGGCAGCATTTA 58.734 39.130 0.00 0.00 0.00 1.40
253 254 3.088532 TCGTAGGATTTTGGCAGCATTT 58.911 40.909 0.00 0.00 0.00 2.32
254 255 2.722094 TCGTAGGATTTTGGCAGCATT 58.278 42.857 0.00 0.00 0.00 3.56
255 256 2.418368 TCGTAGGATTTTGGCAGCAT 57.582 45.000 0.00 0.00 0.00 3.79
256 257 2.192664 TTCGTAGGATTTTGGCAGCA 57.807 45.000 0.00 0.00 0.00 4.41
257 258 2.945668 AGATTCGTAGGATTTTGGCAGC 59.054 45.455 0.00 0.00 0.00 5.25
258 259 5.360591 ACTAGATTCGTAGGATTTTGGCAG 58.639 41.667 0.00 0.00 0.00 4.85
259 260 5.353394 ACTAGATTCGTAGGATTTTGGCA 57.647 39.130 0.00 0.00 0.00 4.92
260 261 5.401674 CGTACTAGATTCGTAGGATTTTGGC 59.598 44.000 0.00 0.00 0.00 4.52
261 262 5.919141 CCGTACTAGATTCGTAGGATTTTGG 59.081 44.000 0.00 0.00 0.00 3.28
262 263 6.501781 ACCGTACTAGATTCGTAGGATTTTG 58.498 40.000 0.00 0.00 0.00 2.44
263 264 6.512415 CGACCGTACTAGATTCGTAGGATTTT 60.512 42.308 0.00 0.00 0.00 1.82
264 265 5.049818 CGACCGTACTAGATTCGTAGGATTT 60.050 44.000 0.00 0.00 0.00 2.17
265 266 4.450419 CGACCGTACTAGATTCGTAGGATT 59.550 45.833 0.00 0.00 0.00 3.01
266 267 3.993081 CGACCGTACTAGATTCGTAGGAT 59.007 47.826 0.00 0.00 0.00 3.24
267 268 3.384668 CGACCGTACTAGATTCGTAGGA 58.615 50.000 0.00 0.00 0.00 2.94
268 269 2.096516 GCGACCGTACTAGATTCGTAGG 60.097 54.545 0.00 0.00 32.26 3.18
269 270 2.409497 CGCGACCGTACTAGATTCGTAG 60.409 54.545 0.00 0.00 32.26 3.51
270 271 1.522676 CGCGACCGTACTAGATTCGTA 59.477 52.381 0.00 0.00 32.26 3.43
271 272 0.302890 CGCGACCGTACTAGATTCGT 59.697 55.000 0.00 0.00 32.26 3.85
272 273 3.054144 CGCGACCGTACTAGATTCG 57.946 57.895 0.00 0.00 0.00 3.34
283 284 2.099831 GTCTACCTCACGCGACCG 59.900 66.667 15.93 0.00 41.14 4.79
284 285 0.745845 TAGGTCTACCTCACGCGACC 60.746 60.000 15.93 7.27 44.77 4.79
285 286 0.656785 CTAGGTCTACCTCACGCGAC 59.343 60.000 15.93 0.00 44.77 5.19
286 287 0.538584 TCTAGGTCTACCTCACGCGA 59.461 55.000 15.93 0.00 44.77 5.87
287 288 1.595466 ATCTAGGTCTACCTCACGCG 58.405 55.000 3.53 3.53 44.77 6.01
288 289 3.075884 CCTATCTAGGTCTACCTCACGC 58.924 54.545 4.57 0.00 44.77 5.34
289 290 3.072768 ACCCTATCTAGGTCTACCTCACG 59.927 52.174 4.57 0.00 44.77 4.35
290 291 4.727792 ACCCTATCTAGGTCTACCTCAC 57.272 50.000 4.57 0.00 44.77 3.51
299 300 3.053095 TCTTTCCGTGACCCTATCTAGGT 60.053 47.826 2.69 0.00 42.03 3.08
300 301 3.318557 GTCTTTCCGTGACCCTATCTAGG 59.681 52.174 0.00 0.00 43.25 3.02
301 302 3.003482 CGTCTTTCCGTGACCCTATCTAG 59.997 52.174 0.00 0.00 0.00 2.43
302 303 2.947652 CGTCTTTCCGTGACCCTATCTA 59.052 50.000 0.00 0.00 0.00 1.98
303 304 1.749634 CGTCTTTCCGTGACCCTATCT 59.250 52.381 0.00 0.00 0.00 1.98
304 305 1.475682 ACGTCTTTCCGTGACCCTATC 59.524 52.381 0.00 0.00 40.08 2.08
305 306 1.553706 ACGTCTTTCCGTGACCCTAT 58.446 50.000 0.00 0.00 40.08 2.57
306 307 1.270550 GAACGTCTTTCCGTGACCCTA 59.729 52.381 0.00 0.00 41.65 3.53
307 308 0.033090 GAACGTCTTTCCGTGACCCT 59.967 55.000 0.00 0.00 41.65 4.34
308 309 0.033090 AGAACGTCTTTCCGTGACCC 59.967 55.000 0.00 0.00 41.65 4.46
309 310 1.861971 AAGAACGTCTTTCCGTGACC 58.138 50.000 0.00 0.00 41.65 4.02
310 311 3.893720 TCTAAGAACGTCTTTCCGTGAC 58.106 45.455 5.74 0.00 41.65 3.67
311 312 3.057736 CCTCTAAGAACGTCTTTCCGTGA 60.058 47.826 5.74 0.00 41.65 4.35
312 313 3.243336 CCTCTAAGAACGTCTTTCCGTG 58.757 50.000 5.74 0.00 41.65 4.94
313 314 2.352519 GCCTCTAAGAACGTCTTTCCGT 60.353 50.000 5.74 0.00 44.23 4.69
314 315 2.094649 AGCCTCTAAGAACGTCTTTCCG 60.095 50.000 5.74 0.00 37.89 4.30
315 316 3.596310 AGCCTCTAAGAACGTCTTTCC 57.404 47.619 5.74 0.00 37.89 3.13
316 317 5.103687 CCTTAGCCTCTAAGAACGTCTTTC 58.896 45.833 13.51 0.00 37.89 2.62
317 318 4.771054 TCCTTAGCCTCTAAGAACGTCTTT 59.229 41.667 13.51 0.00 37.89 2.52
318 319 4.342359 TCCTTAGCCTCTAAGAACGTCTT 58.658 43.478 13.51 0.00 40.35 3.01
319 320 3.965694 TCCTTAGCCTCTAAGAACGTCT 58.034 45.455 13.51 0.00 0.00 4.18
320 321 4.715527 TTCCTTAGCCTCTAAGAACGTC 57.284 45.455 13.51 0.00 0.00 4.34
321 322 4.282703 TGTTTCCTTAGCCTCTAAGAACGT 59.717 41.667 13.51 0.00 0.00 3.99
322 323 4.626172 GTGTTTCCTTAGCCTCTAAGAACG 59.374 45.833 13.51 0.26 0.00 3.95
323 324 5.548406 TGTGTTTCCTTAGCCTCTAAGAAC 58.452 41.667 13.51 11.19 0.00 3.01
339 340 6.918022 CCAATTCCACTAGTTTCTTGTGTTTC 59.082 38.462 0.00 0.00 35.95 2.78
344 345 4.729868 AGCCAATTCCACTAGTTTCTTGT 58.270 39.130 0.00 0.00 0.00 3.16
346 347 4.021981 GCAAGCCAATTCCACTAGTTTCTT 60.022 41.667 0.00 0.00 0.00 2.52
352 353 0.734889 CCGCAAGCCAATTCCACTAG 59.265 55.000 0.00 0.00 0.00 2.57
358 359 2.125952 GCCACCGCAAGCCAATTC 60.126 61.111 0.00 0.00 34.03 2.17
373 374 1.007580 GTAACTTGGCTTCTAGCGCC 58.992 55.000 2.29 13.99 43.62 6.53
375 376 1.135199 TCCGTAACTTGGCTTCTAGCG 60.135 52.381 0.00 0.00 43.62 4.26
376 377 2.667473 TCCGTAACTTGGCTTCTAGC 57.333 50.000 0.00 0.00 41.46 3.42
377 378 3.194968 TCCTTCCGTAACTTGGCTTCTAG 59.805 47.826 0.00 0.00 0.00 2.43
394 405 5.520649 GGTTGATACGACAATCTTCTCCTTC 59.479 44.000 0.00 0.00 32.36 3.46
410 421 8.141909 TCTAAGCATATGTACAGTGGTTGATAC 58.858 37.037 26.10 6.60 35.47 2.24
430 441 9.267084 CTTCTATGGTTTTCTTATCCTCTAAGC 57.733 37.037 0.00 0.00 0.00 3.09
439 450 5.193728 TGGCCCTCTTCTATGGTTTTCTTAT 59.806 40.000 0.00 0.00 0.00 1.73
464 475 0.607489 AGTGCCAGTGACAGCCAATC 60.607 55.000 0.00 0.00 0.00 2.67
479 490 2.603560 GAGCGTTGACAACCTATAGTGC 59.396 50.000 12.66 8.16 0.00 4.40
480 491 4.111375 AGAGCGTTGACAACCTATAGTG 57.889 45.455 12.66 0.00 0.00 2.74
481 492 4.803098 AAGAGCGTTGACAACCTATAGT 57.197 40.909 12.66 0.00 0.00 2.12
484 495 4.273148 AGAAAGAGCGTTGACAACCTAT 57.727 40.909 12.66 5.58 0.00 2.57
485 496 3.746045 AGAAAGAGCGTTGACAACCTA 57.254 42.857 12.66 0.00 0.00 3.08
486 497 2.622064 AGAAAGAGCGTTGACAACCT 57.378 45.000 12.66 10.35 0.00 3.50
489 500 3.562557 GGGTTAAGAAAGAGCGTTGACAA 59.437 43.478 0.00 0.00 0.00 3.18
537 556 2.387445 TTAGCATGCGTGGCACGTC 61.387 57.895 36.68 28.60 44.73 4.34
541 560 1.003959 TCTGTTAGCATGCGTGGCA 60.004 52.632 13.01 9.33 44.86 4.92
543 562 1.709760 CGTCTGTTAGCATGCGTGG 59.290 57.895 13.01 2.57 0.00 4.94
545 578 0.670546 AAGCGTCTGTTAGCATGCGT 60.671 50.000 13.01 3.35 35.48 5.24
550 583 0.388134 GACCGAAGCGTCTGTTAGCA 60.388 55.000 0.00 0.00 35.48 3.49
551 584 1.403972 CGACCGAAGCGTCTGTTAGC 61.404 60.000 0.00 0.00 0.00 3.09
553 586 1.210931 CCGACCGAAGCGTCTGTTA 59.789 57.895 0.00 0.00 0.00 2.41
558 591 0.942884 AAAGAACCGACCGAAGCGTC 60.943 55.000 0.00 0.00 0.00 5.19
566 599 0.721718 CGATGCTGAAAGAACCGACC 59.278 55.000 0.00 0.00 15.04 4.79
567 600 0.095417 GCGATGCTGAAAGAACCGAC 59.905 55.000 0.00 0.00 15.04 4.79
571 604 1.425428 CGGGCGATGCTGAAAGAAC 59.575 57.895 0.00 0.00 34.07 3.01
599 633 0.390603 TCATCGCGGGTAAGTGTTGG 60.391 55.000 6.13 0.00 0.00 3.77
605 639 1.480219 GCGTCTTCATCGCGGGTAAG 61.480 60.000 6.13 7.58 43.94 2.34
616 650 3.889134 CTGCCTGGCTGCGTCTTCA 62.889 63.158 21.03 0.00 0.00 3.02
637 671 1.269723 GTTGGCTACTTGCTTGGGTTC 59.730 52.381 0.00 0.00 42.39 3.62
644 682 2.742372 CCGCGTTGGCTACTTGCT 60.742 61.111 4.92 0.00 42.39 3.91
879 1003 3.330998 GAGGGAATAAATAGTGGGGAGGG 59.669 52.174 0.00 0.00 0.00 4.30
905 1029 1.528309 GTTGTGGAGGTGTGTGGGG 60.528 63.158 0.00 0.00 0.00 4.96
909 1033 0.110486 GGATGGTTGTGGAGGTGTGT 59.890 55.000 0.00 0.00 0.00 3.72
914 1038 0.035056 GTGGAGGATGGTTGTGGAGG 60.035 60.000 0.00 0.00 0.00 4.30
915 1039 0.692476 TGTGGAGGATGGTTGTGGAG 59.308 55.000 0.00 0.00 0.00 3.86
988 1147 1.642037 GCCGCCATGGATGATGATCG 61.642 60.000 18.40 6.54 42.00 3.69
1014 1173 4.052229 GGTTGCTGCTGCTGCTGG 62.052 66.667 27.67 12.95 40.48 4.85
1036 1195 4.531912 CTGCGATTGCTGCTGCGG 62.532 66.667 11.21 3.55 43.34 5.69
1042 1201 2.100410 CTGCTGCTGCGATTGCTG 59.900 61.111 11.21 6.99 43.34 4.41
1043 1202 3.132139 CCTGCTGCTGCGATTGCT 61.132 61.111 11.21 0.00 43.34 3.91
1044 1203 4.849329 GCCTGCTGCTGCGATTGC 62.849 66.667 11.21 0.00 43.34 3.56
1164 1323 1.144936 GAAGGTGATGAGGCCGGAG 59.855 63.158 5.05 0.00 0.00 4.63
1167 1326 1.450312 GTGGAAGGTGATGAGGCCG 60.450 63.158 0.00 0.00 0.00 6.13
1408 1567 2.554370 TAATTTTCCTATCCGGCCGG 57.446 50.000 39.13 39.13 0.00 6.13
1440 1611 3.875134 GGGAGAGAAGAAACAACAACGAA 59.125 43.478 0.00 0.00 0.00 3.85
1442 1613 2.548480 GGGGAGAGAAGAAACAACAACG 59.452 50.000 0.00 0.00 0.00 4.10
1449 1620 0.391793 CAGCGGGGGAGAGAAGAAAC 60.392 60.000 0.00 0.00 0.00 2.78
1487 1658 3.560068 TCGACAGTGCCTTTTCTTTTCTC 59.440 43.478 0.00 0.00 0.00 2.87
1552 1723 8.859156 GCTTATGTCGATTAATTCAGAGAGATC 58.141 37.037 0.00 0.00 0.00 2.75
1592 1772 0.172578 CAGAGCAATGTGGCATGTGG 59.827 55.000 0.00 0.00 35.83 4.17
1612 1795 1.063327 CGTGAGTAGCGGCAGAGAG 59.937 63.158 1.45 0.00 0.00 3.20
1640 1823 3.245519 GCGTAAAGAGATGGACGGATTTC 59.754 47.826 0.00 0.00 35.87 2.17
1651 1834 2.358939 ACGGTTTCGCGTAAAGAGAT 57.641 45.000 5.77 0.00 40.63 2.75
1673 1856 2.004017 TCACACACTGTTCAACGTTCC 58.996 47.619 0.00 0.00 0.00 3.62
1690 1873 0.246086 CACCTCTGGCTCTCTGTCAC 59.754 60.000 0.00 0.00 0.00 3.67
1693 1876 0.470833 ACACACCTCTGGCTCTCTGT 60.471 55.000 0.00 0.00 0.00 3.41
1710 1894 0.323816 AGCGATCAGAGTGGGAGACA 60.324 55.000 0.00 0.00 0.00 3.41
1714 1898 2.121538 CGGAGCGATCAGAGTGGGA 61.122 63.158 1.84 0.00 0.00 4.37
1734 1918 4.150804 GTCGATTAATTCAGAGATTCCGGC 59.849 45.833 0.00 0.00 0.00 6.13
1736 1920 6.642540 TCATGTCGATTAATTCAGAGATTCCG 59.357 38.462 0.00 0.00 0.00 4.30
1747 1931 6.273825 ACGTAGAAGCTCATGTCGATTAATT 58.726 36.000 0.00 0.00 0.00 1.40
1775 1959 2.229784 GAGAAGGGGCAATGTCTTGTTG 59.770 50.000 0.00 0.00 34.69 3.33
1776 1960 2.108952 AGAGAAGGGGCAATGTCTTGTT 59.891 45.455 0.00 0.00 34.69 2.83
1778 1962 2.089980 CAGAGAAGGGGCAATGTCTTG 58.910 52.381 0.00 0.00 35.36 3.02
1779 1963 1.988107 TCAGAGAAGGGGCAATGTCTT 59.012 47.619 0.00 0.00 0.00 3.01
1780 1964 1.661463 TCAGAGAAGGGGCAATGTCT 58.339 50.000 0.00 0.00 0.00 3.41
1788 1992 5.417266 GGAAGAAAAAGAATCAGAGAAGGGG 59.583 44.000 0.00 0.00 0.00 4.79
1799 2003 4.999311 GCCATTTGCTGGAAGAAAAAGAAT 59.001 37.500 0.00 0.00 46.53 2.40
1812 2016 0.815734 CAGAGAAGGGCCATTTGCTG 59.184 55.000 15.58 15.58 40.92 4.41
1821 2025 1.825474 TGTGTAGTAGCAGAGAAGGGC 59.175 52.381 0.00 0.00 0.00 5.19
1824 2028 4.159857 GTTCGTGTGTAGTAGCAGAGAAG 58.840 47.826 0.00 0.00 0.00 2.85
1836 2040 2.349060 GCGCTTCAATTGTTCGTGTGTA 60.349 45.455 5.13 0.00 0.00 2.90
1839 2043 0.384230 CGCGCTTCAATTGTTCGTGT 60.384 50.000 5.56 0.00 0.00 4.49
1840 2044 0.384230 ACGCGCTTCAATTGTTCGTG 60.384 50.000 5.73 19.91 36.81 4.35
1843 2047 0.789383 CGGACGCGCTTCAATTGTTC 60.789 55.000 16.33 0.00 0.00 3.18
1844 2048 1.206578 CGGACGCGCTTCAATTGTT 59.793 52.632 16.33 0.00 0.00 2.83
1847 2051 0.949105 AAGACGGACGCGCTTCAATT 60.949 50.000 16.33 1.65 0.00 2.32
1849 2053 1.155424 AAAAGACGGACGCGCTTCAA 61.155 50.000 16.33 0.00 0.00 2.69
1850 2054 1.554042 GAAAAGACGGACGCGCTTCA 61.554 55.000 16.33 0.00 0.00 3.02
1854 2058 2.308039 ACAGAAAAGACGGACGCGC 61.308 57.895 5.73 0.00 0.00 6.86
1855 2059 0.937699 TCACAGAAAAGACGGACGCG 60.938 55.000 3.53 3.53 0.00 6.01
1856 2060 1.214367 TTCACAGAAAAGACGGACGC 58.786 50.000 0.00 0.00 0.00 5.19
1858 2062 2.033151 CGGTTTCACAGAAAAGACGGAC 60.033 50.000 0.00 0.00 0.00 4.79
1859 2063 2.206750 CGGTTTCACAGAAAAGACGGA 58.793 47.619 0.00 0.00 0.00 4.69
1861 2065 3.668596 AACGGTTTCACAGAAAAGACG 57.331 42.857 9.41 9.41 0.00 4.18
1863 2067 5.049680 GCTCATAACGGTTTCACAGAAAAGA 60.050 40.000 0.00 0.00 0.00 2.52
1864 2068 5.147162 GCTCATAACGGTTTCACAGAAAAG 58.853 41.667 0.00 0.00 0.00 2.27
1866 2070 3.185594 CGCTCATAACGGTTTCACAGAAA 59.814 43.478 0.00 0.00 0.00 2.52
1867 2071 2.734606 CGCTCATAACGGTTTCACAGAA 59.265 45.455 0.00 0.00 0.00 3.02
1868 2072 2.288579 ACGCTCATAACGGTTTCACAGA 60.289 45.455 0.00 0.00 34.00 3.41
1869 2073 2.066262 ACGCTCATAACGGTTTCACAG 58.934 47.619 0.00 0.00 34.00 3.66
1870 2074 2.063266 GACGCTCATAACGGTTTCACA 58.937 47.619 0.00 0.00 34.00 3.58
1871 2075 1.058695 CGACGCTCATAACGGTTTCAC 59.941 52.381 0.00 0.00 34.00 3.18
1872 2076 1.068402 TCGACGCTCATAACGGTTTCA 60.068 47.619 0.00 0.00 34.00 2.69
1873 2077 1.621107 TCGACGCTCATAACGGTTTC 58.379 50.000 0.00 0.00 34.00 2.78
1874 2078 1.723003 GTTCGACGCTCATAACGGTTT 59.277 47.619 0.00 0.00 34.00 3.27
1875 2079 1.336148 TGTTCGACGCTCATAACGGTT 60.336 47.619 0.00 0.00 34.00 4.44
1876 2080 0.241749 TGTTCGACGCTCATAACGGT 59.758 50.000 0.00 0.00 34.00 4.83
1877 2081 0.914551 CTGTTCGACGCTCATAACGG 59.085 55.000 0.00 0.00 34.00 4.44
1878 2082 0.294887 GCTGTTCGACGCTCATAACG 59.705 55.000 0.00 0.00 0.00 3.18
1879 2083 0.294887 CGCTGTTCGACGCTCATAAC 59.705 55.000 0.00 0.00 41.67 1.89
1880 2084 0.109458 ACGCTGTTCGACGCTCATAA 60.109 50.000 0.00 0.00 41.67 1.90
1881 2085 0.796870 CACGCTGTTCGACGCTCATA 60.797 55.000 0.00 0.00 41.67 2.15
1882 2086 2.088763 CACGCTGTTCGACGCTCAT 61.089 57.895 0.00 0.00 41.67 2.90
1883 2087 2.729491 CACGCTGTTCGACGCTCA 60.729 61.111 0.00 0.00 41.67 4.26
1884 2088 4.122515 GCACGCTGTTCGACGCTC 62.123 66.667 0.00 0.00 41.67 5.03
1887 2091 4.104633 GTCGCACGCTGTTCGACG 62.105 66.667 14.81 0.00 41.33 5.12
1888 2092 4.104633 CGTCGCACGCTGTTCGAC 62.105 66.667 18.04 18.04 45.43 4.20
1889 2093 4.316571 TCGTCGCACGCTGTTCGA 62.317 61.111 4.15 0.28 42.21 3.71
1890 2094 4.104633 GTCGTCGCACGCTGTTCG 62.105 66.667 4.15 0.00 42.21 3.95
1891 2095 1.886861 AATGTCGTCGCACGCTGTTC 61.887 55.000 4.15 0.00 42.21 3.18
1892 2096 1.954146 AATGTCGTCGCACGCTGTT 60.954 52.632 4.15 0.00 42.21 3.16
1893 2097 2.355837 AATGTCGTCGCACGCTGT 60.356 55.556 4.15 0.00 42.21 4.40
1894 2098 2.094539 CAATGTCGTCGCACGCTG 59.905 61.111 4.15 0.00 42.21 5.18
1895 2099 3.112075 CCAATGTCGTCGCACGCT 61.112 61.111 4.15 0.00 42.21 5.07
1896 2100 4.794241 GCCAATGTCGTCGCACGC 62.794 66.667 4.15 1.51 42.21 5.34
1897 2101 3.410516 TGCCAATGTCGTCGCACG 61.411 61.111 2.79 2.79 44.19 5.34
1898 2102 2.173382 GTGCCAATGTCGTCGCAC 59.827 61.111 0.00 0.00 44.17 5.34
1899 2103 3.410516 CGTGCCAATGTCGTCGCA 61.411 61.111 0.00 0.00 0.00 5.10
1900 2104 4.147322 CCGTGCCAATGTCGTCGC 62.147 66.667 0.00 0.00 0.00 5.19
1901 2105 4.147322 GCCGTGCCAATGTCGTCG 62.147 66.667 0.00 0.00 0.00 5.12
1902 2106 3.047280 TGCCGTGCCAATGTCGTC 61.047 61.111 0.00 0.00 0.00 4.20
1903 2107 3.353836 GTGCCGTGCCAATGTCGT 61.354 61.111 0.00 0.00 0.00 4.34
1904 2108 4.444024 CGTGCCGTGCCAATGTCG 62.444 66.667 0.00 0.00 0.00 4.35
1905 2109 4.759096 GCGTGCCGTGCCAATGTC 62.759 66.667 0.00 0.00 0.00 3.06
1912 2116 2.502510 CAAGATTGCGTGCCGTGC 60.503 61.111 0.00 0.00 0.00 5.34
1923 2127 3.136763 CTGATCGTATGGCTGCAAGATT 58.863 45.455 0.50 0.00 34.07 2.40
1926 2130 0.585357 GCTGATCGTATGGCTGCAAG 59.415 55.000 0.50 0.00 0.00 4.01
1932 2136 3.044305 GGCCGCTGATCGTATGGC 61.044 66.667 8.98 8.98 44.98 4.40
1953 2157 1.293924 CATCTTGCTGATGGACCGAC 58.706 55.000 10.93 0.00 46.55 4.79
1966 2170 0.870393 ACACACGCTGCTTCATCTTG 59.130 50.000 0.00 0.00 0.00 3.02
1993 2197 2.002018 TTTGGGCCTTCTTCCGGTGT 62.002 55.000 4.53 0.00 0.00 4.16
1995 2199 0.323451 GATTTGGGCCTTCTTCCGGT 60.323 55.000 4.53 0.00 0.00 5.28
2005 2209 0.610785 TCGGTGAAAGGATTTGGGCC 60.611 55.000 0.00 0.00 39.27 5.80
2027 2231 0.468226 TCTCAACGGTTCTTGCCAGT 59.532 50.000 0.00 0.00 0.00 4.00
2029 2233 1.140052 TCTTCTCAACGGTTCTTGCCA 59.860 47.619 0.00 0.00 0.00 4.92
2030 2234 1.801178 CTCTTCTCAACGGTTCTTGCC 59.199 52.381 0.00 0.00 0.00 4.52
2032 2236 2.802816 CCACTCTTCTCAACGGTTCTTG 59.197 50.000 0.00 0.00 0.00 3.02
2034 2238 1.270358 GCCACTCTTCTCAACGGTTCT 60.270 52.381 0.00 0.00 0.00 3.01
2035 2239 1.149148 GCCACTCTTCTCAACGGTTC 58.851 55.000 0.00 0.00 0.00 3.62
2036 2240 0.759346 AGCCACTCTTCTCAACGGTT 59.241 50.000 0.00 0.00 0.00 4.44
2038 2242 0.318441 TCAGCCACTCTTCTCAACGG 59.682 55.000 0.00 0.00 0.00 4.44
2064 2315 0.034059 CGGAGTTCAAGTCTGCACCT 59.966 55.000 0.00 0.00 0.00 4.00
2065 2316 0.951040 CCGGAGTTCAAGTCTGCACC 60.951 60.000 0.00 0.00 0.00 5.01
2075 2326 2.599281 TGCGAGGACCGGAGTTCA 60.599 61.111 9.46 0.00 39.04 3.18
2121 2442 6.687604 TCGTGGAAGTATGTATGTATGGATG 58.312 40.000 0.00 0.00 0.00 3.51
2128 2449 2.102588 GGCCTCGTGGAAGTATGTATGT 59.897 50.000 7.92 0.00 34.57 2.29
2175 2496 1.791555 CGAATTTCAGCCATGACGTGC 60.792 52.381 0.00 0.00 34.35 5.34
2186 2507 3.124466 TGACGTATTGCACCGAATTTCAG 59.876 43.478 6.61 0.00 0.00 3.02
2226 2547 1.375523 CTACCACCGCTTGACCACC 60.376 63.158 0.00 0.00 0.00 4.61
2228 2549 2.345991 GCTACCACCGCTTGACCA 59.654 61.111 0.00 0.00 0.00 4.02
2229 2550 1.741770 CTGCTACCACCGCTTGACC 60.742 63.158 0.00 0.00 0.00 4.02
2230 2551 2.391389 GCTGCTACCACCGCTTGAC 61.391 63.158 0.00 0.00 0.00 3.18
2231 2552 2.047274 GCTGCTACCACCGCTTGA 60.047 61.111 0.00 0.00 0.00 3.02
2232 2553 3.127533 GGCTGCTACCACCGCTTG 61.128 66.667 0.00 0.00 0.00 4.01
2235 2556 4.840005 GGAGGCTGCTACCACCGC 62.840 72.222 0.00 0.00 30.33 5.68
2325 2680 2.217964 AAATTCGGCGTACGTGCGTG 62.218 55.000 26.31 18.92 44.69 5.34
2326 2681 1.947934 GAAATTCGGCGTACGTGCGT 61.948 55.000 26.31 5.30 44.69 5.24
2327 2682 1.295645 GAAATTCGGCGTACGTGCG 60.296 57.895 22.15 22.15 44.69 5.34
2328 2683 0.372334 ATGAAATTCGGCGTACGTGC 59.628 50.000 17.90 0.00 44.69 5.34
2329 2684 2.689635 GAATGAAATTCGGCGTACGTG 58.310 47.619 17.90 10.15 44.37 4.49
2344 2699 2.236146 ACATCTAGGCCGTGTTGAATGA 59.764 45.455 13.48 0.00 0.00 2.57
2345 2700 2.609459 GACATCTAGGCCGTGTTGAATG 59.391 50.000 13.48 7.57 0.00 2.67
2358 2713 4.749099 GCAGTAGCAGGAATTGACATCTAG 59.251 45.833 0.00 0.00 41.58 2.43
2361 2716 3.539604 AGCAGTAGCAGGAATTGACATC 58.460 45.455 0.00 0.00 45.49 3.06
2380 2739 1.080995 CAGCTGAACGGAGCACTAGC 61.081 60.000 8.42 0.00 41.83 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.