Multiple sequence alignment - TraesCS7D01G439700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G439700 chr7D 100.000 2672 0 0 1 2672 559269142 559266471 0.000000e+00 4935.0
1 TraesCS7D01G439700 chr7D 87.427 342 36 6 3 340 453089362 453089700 1.160000e-103 387.0
2 TraesCS7D01G439700 chr7D 90.991 111 10 0 2562 2672 560587596 560587706 1.660000e-32 150.0
3 TraesCS7D01G439700 chr7D 86.239 109 9 6 2300 2405 476777260 476777365 2.170000e-21 113.0
4 TraesCS7D01G439700 chr7D 97.500 40 1 0 348 387 208214656 208214695 4.770000e-08 69.4
5 TraesCS7D01G439700 chr7B 92.354 1648 85 21 465 2083 607428066 607426431 0.000000e+00 2307.0
6 TraesCS7D01G439700 chr7B 86.648 352 41 5 1 346 665571109 665570758 4.170000e-103 385.0
7 TraesCS7D01G439700 chr7B 80.473 169 28 3 2300 2465 606396195 606396029 1.000000e-24 124.0
8 TraesCS7D01G439700 chr7A 96.855 1272 35 3 347 1613 644029397 644028126 0.000000e+00 2122.0
9 TraesCS7D01G439700 chr7A 92.286 350 21 3 2 345 644029784 644029435 2.390000e-135 492.0
10 TraesCS7D01G439700 chr7A 86.895 351 41 4 1 346 493091896 493092246 3.230000e-104 388.0
11 TraesCS7D01G439700 chr7A 79.268 164 27 7 2300 2460 85361905 85361746 1.010000e-19 108.0
12 TraesCS7D01G439700 chr7A 97.619 42 1 0 347 388 121553990 121553949 3.690000e-09 73.1
13 TraesCS7D01G439700 chr3D 88.312 385 37 4 2294 2672 45558660 45559042 3.140000e-124 455.0
14 TraesCS7D01G439700 chr3D 86.610 351 39 6 1 344 302225492 302225143 5.400000e-102 381.0
15 TraesCS7D01G439700 chr3D 83.333 84 14 0 2337 2420 565051857 565051940 7.930000e-11 78.7
16 TraesCS7D01G439700 chr4D 86.684 383 42 6 2295 2672 36421366 36421744 1.480000e-112 416.0
17 TraesCS7D01G439700 chr1A 88.000 350 35 5 1 345 484294558 484294211 8.910000e-110 407.0
18 TraesCS7D01G439700 chr1A 97.500 40 1 0 348 387 344120195 344120156 4.770000e-08 69.4
19 TraesCS7D01G439700 chr1A 97.368 38 1 0 353 390 127841027 127840990 6.170000e-07 65.8
20 TraesCS7D01G439700 chr2A 87.714 350 38 3 1 345 306178543 306178194 1.150000e-108 403.0
21 TraesCS7D01G439700 chr2A 88.270 341 34 4 2299 2634 601805294 601805633 1.150000e-108 403.0
22 TraesCS7D01G439700 chr2A 81.977 172 24 7 2298 2465 385316442 385316274 3.590000e-29 139.0
23 TraesCS7D01G439700 chr2A 81.395 172 24 8 2298 2465 561013635 561013802 1.670000e-27 134.0
24 TraesCS7D01G439700 chr6D 86.723 354 36 7 1 345 399022277 399021926 1.500000e-102 383.0
25 TraesCS7D01G439700 chr2B 86.610 351 39 6 1 345 413035698 413035350 5.400000e-102 381.0
26 TraesCS7D01G439700 chr3B 83.908 174 22 5 2298 2466 229009232 229009404 7.650000e-36 161.0
27 TraesCS7D01G439700 chr5D 74.444 360 78 13 2312 2660 3935300 3935656 2.770000e-30 143.0
28 TraesCS7D01G439700 chr5D 81.977 172 28 2 2297 2465 235701417 235701588 2.770000e-30 143.0
29 TraesCS7D01G439700 chr6B 97.500 40 1 0 348 387 114308681 114308642 4.770000e-08 69.4
30 TraesCS7D01G439700 chr2D 97.561 41 0 1 348 387 99258697 99258737 4.770000e-08 69.4
31 TraesCS7D01G439700 chr2D 100.000 37 0 0 348 384 481447159 481447195 4.770000e-08 69.4
32 TraesCS7D01G439700 chr2D 91.489 47 2 2 338 384 446655445 446655489 2.220000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G439700 chr7D 559266471 559269142 2671 True 4935 4935 100.0000 1 2672 1 chr7D.!!$R1 2671
1 TraesCS7D01G439700 chr7B 607426431 607428066 1635 True 2307 2307 92.3540 465 2083 1 chr7B.!!$R2 1618
2 TraesCS7D01G439700 chr7A 644028126 644029784 1658 True 1307 2122 94.5705 2 1613 2 chr7A.!!$R3 1611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.249911 AGAACGACACAGGCTTGGAC 60.25 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2134 2211 0.026027 CGTACTACTCCAGTCGCGTC 59.974 60.0 5.77 0.0 38.8 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.000701 TAGGGCCTGGTGTCCCATG 61.001 63.158 18.53 0.00 45.07 3.66
54 55 1.546961 CCTGTCTCCCGTGTTCTACT 58.453 55.000 0.00 0.00 0.00 2.57
55 56 1.473278 CCTGTCTCCCGTGTTCTACTC 59.527 57.143 0.00 0.00 0.00 2.59
66 67 2.740981 GTGTTCTACTCTTCCTCGTCGA 59.259 50.000 0.00 0.00 0.00 4.20
81 82 1.006571 TCGAAGACCGCACCTTCAC 60.007 57.895 0.00 0.00 39.86 3.18
136 137 0.458543 CGGATGGAGAACGACACAGG 60.459 60.000 0.00 0.00 0.00 4.00
143 144 0.249911 AGAACGACACAGGCTTGGAC 60.250 55.000 0.00 0.00 0.00 4.02
183 184 4.656454 AGGATAGGTTTAGGGGTAGGTT 57.344 45.455 0.00 0.00 0.00 3.50
263 270 7.013529 GTCATGTTTATATTAAATCCGTCCGC 58.986 38.462 0.00 0.00 0.00 5.54
271 278 1.582610 AAATCCGTCCGCGTTTGCAT 61.583 50.000 4.92 0.00 42.97 3.96
282 289 2.279659 CGCGTTTGCATGAATTTCATCC 59.720 45.455 8.95 0.95 42.97 3.51
283 290 2.279659 GCGTTTGCATGAATTTCATCCG 59.720 45.455 8.95 7.86 42.15 4.18
367 410 1.428448 GAGAAAATTTGCGGGTTGCC 58.572 50.000 0.00 0.00 45.60 4.52
437 481 0.784778 GACTGTGTTGCACGAGTAGC 59.215 55.000 0.00 0.00 37.14 3.58
852 920 1.552337 CGTCTCCTCCCCATATCCATG 59.448 57.143 0.00 0.00 0.00 3.66
916 984 5.830457 TGGTAGTGTTGTCCAATTCATTCAA 59.170 36.000 0.00 0.00 0.00 2.69
1027 1095 1.978542 CGTGAACCTTCGACTACCTG 58.021 55.000 0.00 0.00 0.00 4.00
1692 1765 1.070038 GCGCATGGAAATGTTTGTGG 58.930 50.000 0.30 0.00 0.00 4.17
1736 1809 4.039603 TCTCTGTTGGTGAGAGAGATCA 57.960 45.455 0.00 0.00 46.54 2.92
1766 1839 3.796717 TCGCAGATCAATGCTAACTTACG 59.203 43.478 5.51 0.00 44.24 3.18
1769 1842 5.402568 CGCAGATCAATGCTAACTTACGTAT 59.597 40.000 0.00 0.00 44.24 3.06
1811 1884 9.817809 AGTATGTAATCGTGTCATACAAAATCT 57.182 29.630 14.14 0.00 43.35 2.40
1905 1979 1.455959 CCTAGGCTAGGCGTCCACT 60.456 63.158 26.79 0.00 39.48 4.00
1906 1980 1.457009 CCTAGGCTAGGCGTCCACTC 61.457 65.000 26.79 0.00 39.48 3.51
1907 1981 0.466555 CTAGGCTAGGCGTCCACTCT 60.467 60.000 13.92 0.00 0.00 3.24
1908 1982 0.033405 TAGGCTAGGCGTCCACTCTT 60.033 55.000 11.10 0.00 0.00 2.85
1909 1983 0.033405 AGGCTAGGCGTCCACTCTTA 60.033 55.000 11.10 0.00 0.00 2.10
2037 2111 8.630278 TCTCAGCAGATTTTACTAATACGTTC 57.370 34.615 0.00 0.00 0.00 3.95
2065 2142 6.369340 ACAAATCGTCACCGTGATATAACAAA 59.631 34.615 4.13 0.00 35.01 2.83
2067 2144 6.764877 ATCGTCACCGTGATATAACAAATC 57.235 37.500 4.13 0.00 35.01 2.17
2068 2145 5.045215 TCGTCACCGTGATATAACAAATCC 58.955 41.667 4.13 0.00 35.01 3.01
2083 2160 6.899393 AACAAATCCTTCATCTAGTGCAAA 57.101 33.333 0.00 0.00 0.00 3.68
2084 2161 6.899393 ACAAATCCTTCATCTAGTGCAAAA 57.101 33.333 0.00 0.00 0.00 2.44
2085 2162 7.288810 ACAAATCCTTCATCTAGTGCAAAAA 57.711 32.000 0.00 0.00 0.00 1.94
2086 2163 7.899973 ACAAATCCTTCATCTAGTGCAAAAAT 58.100 30.769 0.00 0.00 0.00 1.82
2087 2164 8.370182 ACAAATCCTTCATCTAGTGCAAAAATT 58.630 29.630 0.00 0.00 0.00 1.82
2088 2165 9.211485 CAAATCCTTCATCTAGTGCAAAAATTT 57.789 29.630 0.00 0.00 0.00 1.82
2139 2216 5.968387 ATAAGAACCTTAAATGAGACGCG 57.032 39.130 3.53 3.53 0.00 6.01
2140 2217 3.587797 AGAACCTTAAATGAGACGCGA 57.412 42.857 15.93 0.00 0.00 5.87
2141 2218 3.251571 AGAACCTTAAATGAGACGCGAC 58.748 45.455 15.93 6.86 0.00 5.19
2142 2219 3.056749 AGAACCTTAAATGAGACGCGACT 60.057 43.478 15.93 13.61 0.00 4.18
2143 2220 2.607187 ACCTTAAATGAGACGCGACTG 58.393 47.619 17.32 1.10 0.00 3.51
2144 2221 1.927174 CCTTAAATGAGACGCGACTGG 59.073 52.381 17.32 5.12 0.00 4.00
2145 2222 2.416836 CCTTAAATGAGACGCGACTGGA 60.417 50.000 17.32 2.35 0.00 3.86
2146 2223 2.561733 TAAATGAGACGCGACTGGAG 57.438 50.000 17.32 0.00 0.00 3.86
2147 2224 0.603569 AAATGAGACGCGACTGGAGT 59.396 50.000 17.32 0.00 0.00 3.85
2148 2225 1.460504 AATGAGACGCGACTGGAGTA 58.539 50.000 17.32 0.00 0.00 2.59
2149 2226 1.018148 ATGAGACGCGACTGGAGTAG 58.982 55.000 17.32 0.00 0.00 2.57
2150 2227 0.321387 TGAGACGCGACTGGAGTAGT 60.321 55.000 17.32 0.00 44.02 2.73
2151 2228 1.066645 TGAGACGCGACTGGAGTAGTA 60.067 52.381 17.32 0.00 40.53 1.82
2152 2229 1.327156 GAGACGCGACTGGAGTAGTAC 59.673 57.143 17.32 0.00 40.53 2.73
2153 2230 0.026027 GACGCGACTGGAGTAGTACG 59.974 60.000 15.93 0.00 40.53 3.67
2154 2231 0.390340 ACGCGACTGGAGTAGTACGA 60.390 55.000 15.93 0.00 40.53 3.43
2155 2232 0.723414 CGCGACTGGAGTAGTACGAA 59.277 55.000 0.00 0.00 40.53 3.85
2156 2233 1.329906 CGCGACTGGAGTAGTACGAAT 59.670 52.381 0.00 0.00 40.53 3.34
2157 2234 2.541346 CGCGACTGGAGTAGTACGAATA 59.459 50.000 0.00 0.00 40.53 1.75
2158 2235 3.362791 CGCGACTGGAGTAGTACGAATAG 60.363 52.174 0.00 0.00 40.53 1.73
2159 2236 3.559242 GCGACTGGAGTAGTACGAATAGT 59.441 47.826 0.00 0.00 40.53 2.12
2160 2237 4.747108 GCGACTGGAGTAGTACGAATAGTA 59.253 45.833 0.00 0.00 40.53 1.82
2161 2238 5.107530 GCGACTGGAGTAGTACGAATAGTAG 60.108 48.000 0.00 1.34 40.53 2.57
2162 2239 5.107530 CGACTGGAGTAGTACGAATAGTAGC 60.108 48.000 0.00 0.00 40.53 3.58
2163 2240 5.927819 ACTGGAGTAGTACGAATAGTAGCT 58.072 41.667 0.00 0.00 38.04 3.32
2164 2241 5.990996 ACTGGAGTAGTACGAATAGTAGCTC 59.009 44.000 0.00 0.00 38.04 4.09
2165 2242 6.172136 TGGAGTAGTACGAATAGTAGCTCT 57.828 41.667 0.00 0.00 35.72 4.09
2166 2243 6.590068 TGGAGTAGTACGAATAGTAGCTCTT 58.410 40.000 0.00 0.00 35.72 2.85
2167 2244 6.705381 TGGAGTAGTACGAATAGTAGCTCTTC 59.295 42.308 0.00 0.00 35.72 2.87
2168 2245 6.147656 GGAGTAGTACGAATAGTAGCTCTTCC 59.852 46.154 0.00 0.00 35.72 3.46
2169 2246 6.590068 AGTAGTACGAATAGTAGCTCTTCCA 58.410 40.000 0.00 0.00 35.72 3.53
2170 2247 7.052873 AGTAGTACGAATAGTAGCTCTTCCAA 58.947 38.462 0.00 0.00 35.72 3.53
2171 2248 6.770746 AGTACGAATAGTAGCTCTTCCAAA 57.229 37.500 0.00 0.00 35.72 3.28
2172 2249 7.349412 AGTACGAATAGTAGCTCTTCCAAAT 57.651 36.000 0.00 0.00 35.72 2.32
2173 2250 7.783042 AGTACGAATAGTAGCTCTTCCAAATT 58.217 34.615 0.00 0.00 35.72 1.82
2174 2251 6.910536 ACGAATAGTAGCTCTTCCAAATTG 57.089 37.500 0.00 0.00 0.00 2.32
2175 2252 5.294552 ACGAATAGTAGCTCTTCCAAATTGC 59.705 40.000 0.00 0.00 0.00 3.56
2176 2253 5.294306 CGAATAGTAGCTCTTCCAAATTGCA 59.706 40.000 0.00 0.00 0.00 4.08
2177 2254 6.017605 CGAATAGTAGCTCTTCCAAATTGCAT 60.018 38.462 0.00 0.00 0.00 3.96
2178 2255 4.978083 AGTAGCTCTTCCAAATTGCATG 57.022 40.909 0.00 0.00 0.00 4.06
2179 2256 4.338879 AGTAGCTCTTCCAAATTGCATGT 58.661 39.130 0.00 0.00 0.00 3.21
2180 2257 3.587797 AGCTCTTCCAAATTGCATGTG 57.412 42.857 0.00 0.00 0.00 3.21
2181 2258 3.159472 AGCTCTTCCAAATTGCATGTGA 58.841 40.909 0.00 0.00 0.00 3.58
2182 2259 3.767673 AGCTCTTCCAAATTGCATGTGAT 59.232 39.130 0.00 0.00 0.00 3.06
2183 2260 3.863424 GCTCTTCCAAATTGCATGTGATG 59.137 43.478 0.00 0.00 0.00 3.07
2195 2272 2.892374 CATGTGATGCCGACTACTTCA 58.108 47.619 0.00 0.00 0.00 3.02
2196 2273 3.461061 CATGTGATGCCGACTACTTCAT 58.539 45.455 0.00 0.00 0.00 2.57
2197 2274 4.620982 CATGTGATGCCGACTACTTCATA 58.379 43.478 0.00 0.00 0.00 2.15
2198 2275 4.041740 TGTGATGCCGACTACTTCATAC 57.958 45.455 0.00 0.00 0.00 2.39
2199 2276 3.699538 TGTGATGCCGACTACTTCATACT 59.300 43.478 0.00 0.00 0.00 2.12
2200 2277 4.202020 TGTGATGCCGACTACTTCATACTC 60.202 45.833 0.00 0.00 0.00 2.59
2201 2278 3.318275 TGATGCCGACTACTTCATACTCC 59.682 47.826 0.00 0.00 0.00 3.85
2202 2279 2.730382 TGCCGACTACTTCATACTCCA 58.270 47.619 0.00 0.00 0.00 3.86
2203 2280 2.426024 TGCCGACTACTTCATACTCCAC 59.574 50.000 0.00 0.00 0.00 4.02
2204 2281 2.426024 GCCGACTACTTCATACTCCACA 59.574 50.000 0.00 0.00 0.00 4.17
2205 2282 3.068307 GCCGACTACTTCATACTCCACAT 59.932 47.826 0.00 0.00 0.00 3.21
2206 2283 4.611943 CCGACTACTTCATACTCCACATG 58.388 47.826 0.00 0.00 0.00 3.21
2207 2284 4.499865 CCGACTACTTCATACTCCACATGG 60.500 50.000 0.00 0.00 0.00 3.66
2208 2285 4.372656 GACTACTTCATACTCCACATGGC 58.627 47.826 0.00 0.00 34.44 4.40
2209 2286 4.033709 ACTACTTCATACTCCACATGGCT 58.966 43.478 0.00 0.00 34.44 4.75
2210 2287 3.550437 ACTTCATACTCCACATGGCTC 57.450 47.619 0.00 0.00 34.44 4.70
2211 2288 2.840038 ACTTCATACTCCACATGGCTCA 59.160 45.455 0.00 0.00 34.44 4.26
2212 2289 3.457380 ACTTCATACTCCACATGGCTCAT 59.543 43.478 0.00 0.00 34.44 2.90
2213 2290 3.480505 TCATACTCCACATGGCTCATG 57.519 47.619 12.06 12.06 46.18 3.07
2214 2291 2.105306 TCATACTCCACATGGCTCATGG 59.895 50.000 16.39 0.00 45.16 3.66
2215 2292 0.181114 TACTCCACATGGCTCATGGC 59.819 55.000 16.39 0.00 45.16 4.40
2227 2304 2.557317 GCTCATGGCCATTTCATTTGG 58.443 47.619 17.92 1.73 37.31 3.28
2228 2305 2.093341 GCTCATGGCCATTTCATTTGGT 60.093 45.455 17.92 0.00 36.57 3.67
2229 2306 3.788937 CTCATGGCCATTTCATTTGGTC 58.211 45.455 17.92 0.00 39.38 4.02
2232 2309 2.607499 TGGCCATTTCATTTGGTCACT 58.393 42.857 0.00 0.00 43.71 3.41
2233 2310 3.772387 TGGCCATTTCATTTGGTCACTA 58.228 40.909 0.00 0.00 43.71 2.74
2234 2311 3.763360 TGGCCATTTCATTTGGTCACTAG 59.237 43.478 0.00 0.00 43.71 2.57
2235 2312 3.763897 GGCCATTTCATTTGGTCACTAGT 59.236 43.478 0.00 0.00 38.76 2.57
2236 2313 4.380867 GGCCATTTCATTTGGTCACTAGTG 60.381 45.833 17.17 17.17 38.76 2.74
2237 2314 4.218417 GCCATTTCATTTGGTCACTAGTGT 59.782 41.667 21.99 0.00 36.57 3.55
2238 2315 5.619981 GCCATTTCATTTGGTCACTAGTGTC 60.620 44.000 21.99 16.48 36.57 3.67
2239 2316 5.707298 CCATTTCATTTGGTCACTAGTGTCT 59.293 40.000 21.99 0.00 0.00 3.41
2240 2317 6.878923 CCATTTCATTTGGTCACTAGTGTCTA 59.121 38.462 21.99 12.21 0.00 2.59
2241 2318 7.390440 CCATTTCATTTGGTCACTAGTGTCTAA 59.610 37.037 21.99 17.34 0.00 2.10
2242 2319 7.962964 TTTCATTTGGTCACTAGTGTCTAAG 57.037 36.000 21.99 10.16 0.00 2.18
2243 2320 6.911250 TCATTTGGTCACTAGTGTCTAAGA 57.089 37.500 21.99 12.08 0.00 2.10
2244 2321 7.297936 TCATTTGGTCACTAGTGTCTAAGAA 57.702 36.000 21.99 7.74 0.00 2.52
2245 2322 7.378966 TCATTTGGTCACTAGTGTCTAAGAAG 58.621 38.462 21.99 13.20 0.00 2.85
2246 2323 5.723672 TTGGTCACTAGTGTCTAAGAAGG 57.276 43.478 21.99 0.00 0.00 3.46
2247 2324 4.737578 TGGTCACTAGTGTCTAAGAAGGT 58.262 43.478 21.99 0.00 0.00 3.50
2248 2325 4.523173 TGGTCACTAGTGTCTAAGAAGGTG 59.477 45.833 21.99 0.00 0.00 4.00
2249 2326 4.765856 GGTCACTAGTGTCTAAGAAGGTGA 59.234 45.833 21.99 0.00 0.00 4.02
2250 2327 5.106078 GGTCACTAGTGTCTAAGAAGGTGAG 60.106 48.000 21.99 0.00 33.96 3.51
2251 2328 5.010933 TCACTAGTGTCTAAGAAGGTGAGG 58.989 45.833 21.99 0.00 0.00 3.86
2252 2329 5.010933 CACTAGTGTCTAAGAAGGTGAGGA 58.989 45.833 15.06 0.00 0.00 3.71
2253 2330 5.124776 CACTAGTGTCTAAGAAGGTGAGGAG 59.875 48.000 15.06 0.00 0.00 3.69
2254 2331 4.390129 AGTGTCTAAGAAGGTGAGGAGA 57.610 45.455 0.00 0.00 0.00 3.71
2255 2332 4.340617 AGTGTCTAAGAAGGTGAGGAGAG 58.659 47.826 0.00 0.00 0.00 3.20
2256 2333 4.043561 AGTGTCTAAGAAGGTGAGGAGAGA 59.956 45.833 0.00 0.00 0.00 3.10
2257 2334 4.953579 GTGTCTAAGAAGGTGAGGAGAGAT 59.046 45.833 0.00 0.00 0.00 2.75
2258 2335 6.069323 AGTGTCTAAGAAGGTGAGGAGAGATA 60.069 42.308 0.00 0.00 0.00 1.98
2259 2336 6.603997 GTGTCTAAGAAGGTGAGGAGAGATAA 59.396 42.308 0.00 0.00 0.00 1.75
2260 2337 7.286775 GTGTCTAAGAAGGTGAGGAGAGATAAT 59.713 40.741 0.00 0.00 0.00 1.28
2261 2338 7.841729 TGTCTAAGAAGGTGAGGAGAGATAATT 59.158 37.037 0.00 0.00 0.00 1.40
2262 2339 8.700973 GTCTAAGAAGGTGAGGAGAGATAATTT 58.299 37.037 0.00 0.00 0.00 1.82
2263 2340 8.919145 TCTAAGAAGGTGAGGAGAGATAATTTC 58.081 37.037 0.00 0.00 0.00 2.17
2264 2341 7.502060 AAGAAGGTGAGGAGAGATAATTTCA 57.498 36.000 0.00 0.00 0.00 2.69
2265 2342 7.688918 AGAAGGTGAGGAGAGATAATTTCAT 57.311 36.000 0.00 0.00 0.00 2.57
2266 2343 7.507829 AGAAGGTGAGGAGAGATAATTTCATG 58.492 38.462 0.00 0.00 0.00 3.07
2267 2344 6.821616 AGGTGAGGAGAGATAATTTCATGT 57.178 37.500 0.00 0.00 0.00 3.21
2268 2345 7.205515 AGGTGAGGAGAGATAATTTCATGTT 57.794 36.000 0.00 0.00 0.00 2.71
2269 2346 7.052873 AGGTGAGGAGAGATAATTTCATGTTG 58.947 38.462 0.00 0.00 0.00 3.33
2270 2347 6.825721 GGTGAGGAGAGATAATTTCATGTTGT 59.174 38.462 0.00 0.00 0.00 3.32
2271 2348 7.201679 GGTGAGGAGAGATAATTTCATGTTGTG 60.202 40.741 0.00 0.00 0.00 3.33
2272 2349 6.825213 TGAGGAGAGATAATTTCATGTTGTGG 59.175 38.462 0.00 0.00 0.00 4.17
2273 2350 6.962182 AGGAGAGATAATTTCATGTTGTGGA 58.038 36.000 0.00 0.00 0.00 4.02
2274 2351 7.405292 AGGAGAGATAATTTCATGTTGTGGAA 58.595 34.615 0.00 0.00 0.00 3.53
2275 2352 8.057623 AGGAGAGATAATTTCATGTTGTGGAAT 58.942 33.333 0.00 0.00 37.65 3.01
2276 2353 8.133627 GGAGAGATAATTTCATGTTGTGGAATG 58.866 37.037 0.00 0.00 36.13 2.67
2277 2354 7.486647 AGAGATAATTTCATGTTGTGGAATGC 58.513 34.615 0.00 0.00 36.13 3.56
2278 2355 7.123098 AGAGATAATTTCATGTTGTGGAATGCA 59.877 33.333 0.00 0.00 36.13 3.96
2279 2356 7.037438 AGATAATTTCATGTTGTGGAATGCAC 58.963 34.615 0.00 0.00 36.13 4.57
2280 2357 4.603989 ATTTCATGTTGTGGAATGCACA 57.396 36.364 2.74 2.74 34.63 4.57
2281 2358 4.603989 TTTCATGTTGTGGAATGCACAT 57.396 36.364 8.70 0.00 32.12 3.21
2282 2359 5.718724 TTTCATGTTGTGGAATGCACATA 57.281 34.783 8.70 1.57 32.12 2.29
2283 2360 5.918426 TTCATGTTGTGGAATGCACATAT 57.082 34.783 8.70 4.00 32.12 1.78
2284 2361 5.503662 TCATGTTGTGGAATGCACATATC 57.496 39.130 8.70 3.65 32.12 1.63
2285 2362 5.195185 TCATGTTGTGGAATGCACATATCT 58.805 37.500 8.70 0.00 32.12 1.98
2286 2363 5.653330 TCATGTTGTGGAATGCACATATCTT 59.347 36.000 8.70 0.00 32.12 2.40
2287 2364 5.313520 TGTTGTGGAATGCACATATCTTG 57.686 39.130 8.70 0.00 32.12 3.02
2288 2365 4.158209 TGTTGTGGAATGCACATATCTTGG 59.842 41.667 8.70 0.00 32.12 3.61
2289 2366 4.233632 TGTGGAATGCACATATCTTGGA 57.766 40.909 2.74 0.00 0.00 3.53
2290 2367 4.201657 TGTGGAATGCACATATCTTGGAG 58.798 43.478 2.74 0.00 0.00 3.86
2291 2368 4.080413 TGTGGAATGCACATATCTTGGAGA 60.080 41.667 2.74 0.00 0.00 3.71
2292 2369 5.068636 GTGGAATGCACATATCTTGGAGAT 58.931 41.667 0.00 0.00 38.70 2.75
2293 2370 5.180868 GTGGAATGCACATATCTTGGAGATC 59.819 44.000 0.00 0.00 36.20 2.75
2294 2371 5.163174 TGGAATGCACATATCTTGGAGATCA 60.163 40.000 0.00 0.00 36.20 2.92
2295 2372 5.766670 GGAATGCACATATCTTGGAGATCAA 59.233 40.000 0.00 0.00 36.20 2.57
2321 2398 1.779569 TTTTGAGAGAGAACGTCGGC 58.220 50.000 0.00 0.00 0.00 5.54
2322 2399 0.959553 TTTGAGAGAGAACGTCGGCT 59.040 50.000 0.00 0.00 0.00 5.52
2323 2400 0.959553 TTGAGAGAGAACGTCGGCTT 59.040 50.000 0.00 0.00 0.00 4.35
2324 2401 0.959553 TGAGAGAGAACGTCGGCTTT 59.040 50.000 0.00 0.00 0.00 3.51
2325 2402 2.156917 TGAGAGAGAACGTCGGCTTTA 58.843 47.619 0.00 0.00 0.00 1.85
2326 2403 2.753452 TGAGAGAGAACGTCGGCTTTAT 59.247 45.455 0.00 0.00 0.00 1.40
2327 2404 3.181499 TGAGAGAGAACGTCGGCTTTATC 60.181 47.826 0.00 0.00 0.00 1.75
2328 2405 2.110226 GAGAGAACGTCGGCTTTATCG 58.890 52.381 0.00 0.00 0.00 2.92
2329 2406 1.741706 AGAGAACGTCGGCTTTATCGA 59.258 47.619 0.00 0.00 0.00 3.59
2330 2407 2.358267 AGAGAACGTCGGCTTTATCGAT 59.642 45.455 2.16 2.16 38.93 3.59
2331 2408 2.720067 GAGAACGTCGGCTTTATCGATC 59.280 50.000 0.00 0.00 38.93 3.69
2332 2409 2.098607 AGAACGTCGGCTTTATCGATCA 59.901 45.455 0.00 0.00 38.93 2.92
2333 2410 1.836383 ACGTCGGCTTTATCGATCAC 58.164 50.000 0.00 0.00 38.93 3.06
2334 2411 1.133598 ACGTCGGCTTTATCGATCACA 59.866 47.619 0.00 0.00 38.93 3.58
2335 2412 2.223735 ACGTCGGCTTTATCGATCACAT 60.224 45.455 0.00 0.00 38.93 3.21
2336 2413 3.004002 ACGTCGGCTTTATCGATCACATA 59.996 43.478 0.00 0.00 38.93 2.29
2337 2414 3.978855 CGTCGGCTTTATCGATCACATAA 59.021 43.478 0.00 0.00 38.93 1.90
2338 2415 4.143597 CGTCGGCTTTATCGATCACATAAC 60.144 45.833 0.00 0.00 38.93 1.89
2339 2416 3.978855 TCGGCTTTATCGATCACATAACG 59.021 43.478 0.00 0.00 0.00 3.18
2340 2417 3.978855 CGGCTTTATCGATCACATAACGA 59.021 43.478 0.00 0.00 40.18 3.85
2341 2418 4.621460 CGGCTTTATCGATCACATAACGAT 59.379 41.667 0.00 0.00 46.07 3.73
2342 2419 5.443301 CGGCTTTATCGATCACATAACGATG 60.443 44.000 0.00 0.00 44.47 3.84
2344 2421 6.073765 GGCTTTATCGATCACATAACGATGTT 60.074 38.462 0.00 0.00 44.18 2.71
2345 2422 7.115805 GGCTTTATCGATCACATAACGATGTTA 59.884 37.037 0.00 0.00 44.18 2.41
2346 2423 7.945178 GCTTTATCGATCACATAACGATGTTAC 59.055 37.037 0.00 0.00 44.18 2.50
2347 2424 8.859517 TTTATCGATCACATAACGATGTTACA 57.140 30.769 0.00 0.00 44.18 2.41
2348 2425 6.749216 ATCGATCACATAACGATGTTACAC 57.251 37.500 0.00 0.00 44.18 2.90
2349 2426 5.642686 TCGATCACATAACGATGTTACACA 58.357 37.500 0.00 0.00 44.18 3.72
2350 2427 5.741982 TCGATCACATAACGATGTTACACAG 59.258 40.000 0.00 0.00 44.18 3.66
2351 2428 5.741982 CGATCACATAACGATGTTACACAGA 59.258 40.000 0.00 0.00 44.18 3.41
2352 2429 6.075362 CGATCACATAACGATGTTACACAGAG 60.075 42.308 0.00 0.00 44.18 3.35
2353 2430 6.020971 TCACATAACGATGTTACACAGAGT 57.979 37.500 0.00 0.00 44.18 3.24
2354 2431 6.090783 TCACATAACGATGTTACACAGAGTC 58.909 40.000 0.00 0.00 44.18 3.36
2355 2432 6.072119 TCACATAACGATGTTACACAGAGTCT 60.072 38.462 0.00 0.00 44.18 3.24
2356 2433 6.586463 CACATAACGATGTTACACAGAGTCTT 59.414 38.462 0.00 0.00 44.18 3.01
2357 2434 6.807230 ACATAACGATGTTACACAGAGTCTTC 59.193 38.462 0.00 0.00 44.18 2.87
2358 2435 4.175787 ACGATGTTACACAGAGTCTTCC 57.824 45.455 0.00 0.00 0.00 3.46
2359 2436 3.172050 CGATGTTACACAGAGTCTTCCG 58.828 50.000 0.00 0.00 0.00 4.30
2360 2437 3.512680 GATGTTACACAGAGTCTTCCGG 58.487 50.000 0.00 0.00 0.00 5.14
2361 2438 2.589720 TGTTACACAGAGTCTTCCGGA 58.410 47.619 0.00 0.00 0.00 5.14
2362 2439 3.162666 TGTTACACAGAGTCTTCCGGAT 58.837 45.455 4.15 0.00 0.00 4.18
2363 2440 4.338012 TGTTACACAGAGTCTTCCGGATA 58.662 43.478 4.15 0.00 0.00 2.59
2364 2441 4.157289 TGTTACACAGAGTCTTCCGGATAC 59.843 45.833 4.15 7.23 0.00 2.24
2365 2442 2.803956 ACACAGAGTCTTCCGGATACA 58.196 47.619 4.15 0.00 0.00 2.29
2366 2443 3.162666 ACACAGAGTCTTCCGGATACAA 58.837 45.455 4.15 0.00 0.00 2.41
2367 2444 3.769844 ACACAGAGTCTTCCGGATACAAT 59.230 43.478 4.15 0.00 0.00 2.71
2368 2445 4.142138 ACACAGAGTCTTCCGGATACAATC 60.142 45.833 4.15 0.57 0.00 2.67
2369 2446 3.385111 ACAGAGTCTTCCGGATACAATCC 59.615 47.826 4.15 0.00 46.22 3.01
2378 2455 2.910688 GGATACAATCCGGAGCAGAA 57.089 50.000 11.34 0.00 40.13 3.02
2379 2456 3.409026 GGATACAATCCGGAGCAGAAT 57.591 47.619 11.34 0.00 40.13 2.40
2380 2457 3.070018 GGATACAATCCGGAGCAGAATG 58.930 50.000 11.34 4.53 40.13 2.67
2381 2458 3.244215 GGATACAATCCGGAGCAGAATGA 60.244 47.826 11.34 0.00 40.13 2.57
2382 2459 2.787473 ACAATCCGGAGCAGAATGAA 57.213 45.000 11.34 0.00 39.69 2.57
2383 2460 3.071874 ACAATCCGGAGCAGAATGAAA 57.928 42.857 11.34 0.00 39.69 2.69
2384 2461 3.420893 ACAATCCGGAGCAGAATGAAAA 58.579 40.909 11.34 0.00 39.69 2.29
2385 2462 3.826157 ACAATCCGGAGCAGAATGAAAAA 59.174 39.130 11.34 0.00 39.69 1.94
2386 2463 4.168760 CAATCCGGAGCAGAATGAAAAAC 58.831 43.478 11.34 0.00 39.69 2.43
2387 2464 2.857483 TCCGGAGCAGAATGAAAAACA 58.143 42.857 0.00 0.00 39.69 2.83
2388 2465 3.218453 TCCGGAGCAGAATGAAAAACAA 58.782 40.909 0.00 0.00 39.69 2.83
2389 2466 3.004315 TCCGGAGCAGAATGAAAAACAAC 59.996 43.478 0.00 0.00 39.69 3.32
2390 2467 3.243367 CCGGAGCAGAATGAAAAACAACA 60.243 43.478 0.00 0.00 39.69 3.33
2391 2468 4.358851 CGGAGCAGAATGAAAAACAACAA 58.641 39.130 0.00 0.00 39.69 2.83
2392 2469 4.442073 CGGAGCAGAATGAAAAACAACAAG 59.558 41.667 0.00 0.00 39.69 3.16
2393 2470 5.591099 GGAGCAGAATGAAAAACAACAAGA 58.409 37.500 0.00 0.00 39.69 3.02
2394 2471 5.460091 GGAGCAGAATGAAAAACAACAAGAC 59.540 40.000 0.00 0.00 39.69 3.01
2395 2472 6.212888 AGCAGAATGAAAAACAACAAGACT 57.787 33.333 0.00 0.00 39.69 3.24
2396 2473 7.333528 AGCAGAATGAAAAACAACAAGACTA 57.666 32.000 0.00 0.00 39.69 2.59
2397 2474 7.420800 AGCAGAATGAAAAACAACAAGACTAG 58.579 34.615 0.00 0.00 39.69 2.57
2398 2475 7.283127 AGCAGAATGAAAAACAACAAGACTAGA 59.717 33.333 0.00 0.00 39.69 2.43
2399 2476 7.915397 GCAGAATGAAAAACAACAAGACTAGAA 59.085 33.333 0.00 0.00 39.69 2.10
2400 2477 9.443283 CAGAATGAAAAACAACAAGACTAGAAG 57.557 33.333 0.00 0.00 39.69 2.85
2401 2478 9.396022 AGAATGAAAAACAACAAGACTAGAAGA 57.604 29.630 0.00 0.00 0.00 2.87
2402 2479 9.657121 GAATGAAAAACAACAAGACTAGAAGAG 57.343 33.333 0.00 0.00 0.00 2.85
2403 2480 8.738645 ATGAAAAACAACAAGACTAGAAGAGT 57.261 30.769 0.00 0.00 42.90 3.24
2404 2481 8.561738 TGAAAAACAACAAGACTAGAAGAGTT 57.438 30.769 0.00 0.00 39.06 3.01
2405 2482 9.010029 TGAAAAACAACAAGACTAGAAGAGTTT 57.990 29.630 0.00 0.00 39.06 2.66
2406 2483 9.841880 GAAAAACAACAAGACTAGAAGAGTTTT 57.158 29.630 0.00 0.00 39.06 2.43
2410 2487 9.444600 AACAACAAGACTAGAAGAGTTTTTACA 57.555 29.630 0.00 0.00 39.06 2.41
2411 2488 9.444600 ACAACAAGACTAGAAGAGTTTTTACAA 57.555 29.630 0.00 0.00 39.06 2.41
2433 2510 7.472543 ACAAAACTTAGCTAATAAATGAGCCG 58.527 34.615 6.64 0.00 39.65 5.52
2434 2511 5.674933 AACTTAGCTAATAAATGAGCCGC 57.325 39.130 6.64 0.00 39.65 6.53
2435 2512 4.962155 ACTTAGCTAATAAATGAGCCGCT 58.038 39.130 6.64 0.00 39.65 5.52
2436 2513 6.097915 ACTTAGCTAATAAATGAGCCGCTA 57.902 37.500 6.64 0.00 39.65 4.26
2437 2514 5.927115 ACTTAGCTAATAAATGAGCCGCTAC 59.073 40.000 6.64 0.00 39.65 3.58
2438 2515 4.336889 AGCTAATAAATGAGCCGCTACA 57.663 40.909 0.00 0.00 39.65 2.74
2439 2516 4.899502 AGCTAATAAATGAGCCGCTACAT 58.100 39.130 0.00 0.00 39.65 2.29
2440 2517 5.308825 AGCTAATAAATGAGCCGCTACATT 58.691 37.500 10.48 10.48 39.65 2.71
2441 2518 6.464222 AGCTAATAAATGAGCCGCTACATTA 58.536 36.000 14.50 6.23 39.65 1.90
2442 2519 6.934645 AGCTAATAAATGAGCCGCTACATTAA 59.065 34.615 14.50 0.00 39.65 1.40
2443 2520 7.118390 AGCTAATAAATGAGCCGCTACATTAAG 59.882 37.037 14.50 11.67 39.65 1.85
2444 2521 7.095187 GCTAATAAATGAGCCGCTACATTAAGT 60.095 37.037 14.50 6.20 35.99 2.24
2445 2522 7.568199 AATAAATGAGCCGCTACATTAAGTT 57.432 32.000 14.50 9.38 35.99 2.66
2446 2523 4.882671 AATGAGCCGCTACATTAAGTTG 57.117 40.909 13.23 0.00 35.39 3.16
2447 2524 2.006888 TGAGCCGCTACATTAAGTTGC 58.993 47.619 0.00 0.00 44.06 4.17
2448 2525 1.330829 GAGCCGCTACATTAAGTTGCC 59.669 52.381 0.00 0.00 44.56 4.52
2449 2526 0.027586 GCCGCTACATTAAGTTGCCG 59.972 55.000 0.00 0.00 44.56 5.69
2450 2527 1.647346 CCGCTACATTAAGTTGCCGA 58.353 50.000 0.00 0.00 44.56 5.54
2451 2528 1.326548 CCGCTACATTAAGTTGCCGAC 59.673 52.381 0.00 0.00 44.56 4.79
2452 2529 1.006391 CGCTACATTAAGTTGCCGACG 60.006 52.381 0.00 0.00 44.56 5.12
2453 2530 2.264813 GCTACATTAAGTTGCCGACGA 58.735 47.619 0.00 0.00 42.13 4.20
2454 2531 2.669434 GCTACATTAAGTTGCCGACGAA 59.331 45.455 0.00 0.00 42.13 3.85
2455 2532 3.483085 GCTACATTAAGTTGCCGACGAAC 60.483 47.826 0.00 0.00 42.13 3.95
2456 2533 2.485903 ACATTAAGTTGCCGACGAACA 58.514 42.857 0.00 0.00 0.00 3.18
2457 2534 3.071479 ACATTAAGTTGCCGACGAACAT 58.929 40.909 0.00 0.00 0.00 2.71
2458 2535 3.120338 ACATTAAGTTGCCGACGAACATG 60.120 43.478 0.00 0.00 0.00 3.21
2459 2536 0.793861 TAAGTTGCCGACGAACATGC 59.206 50.000 0.00 0.00 0.00 4.06
2460 2537 0.884704 AAGTTGCCGACGAACATGCT 60.885 50.000 0.00 0.00 0.00 3.79
2461 2538 0.884704 AGTTGCCGACGAACATGCTT 60.885 50.000 0.00 0.00 0.00 3.91
2462 2539 0.725784 GTTGCCGACGAACATGCTTG 60.726 55.000 0.00 0.00 0.00 4.01
2463 2540 0.882484 TTGCCGACGAACATGCTTGA 60.882 50.000 6.60 0.00 0.00 3.02
2464 2541 0.882484 TGCCGACGAACATGCTTGAA 60.882 50.000 6.60 0.00 0.00 2.69
2465 2542 0.452784 GCCGACGAACATGCTTGAAC 60.453 55.000 6.60 0.00 0.00 3.18
2466 2543 0.865111 CCGACGAACATGCTTGAACA 59.135 50.000 6.60 0.00 0.00 3.18
2467 2544 1.398451 CCGACGAACATGCTTGAACAC 60.398 52.381 6.60 0.00 0.00 3.32
2468 2545 1.526887 CGACGAACATGCTTGAACACT 59.473 47.619 6.60 0.00 0.00 3.55
2469 2546 2.660094 CGACGAACATGCTTGAACACTG 60.660 50.000 6.60 0.00 0.00 3.66
2470 2547 1.002468 ACGAACATGCTTGAACACTGC 60.002 47.619 6.60 0.00 0.00 4.40
2471 2548 1.664016 CGAACATGCTTGAACACTGCC 60.664 52.381 6.60 0.00 0.00 4.85
2472 2549 0.311790 AACATGCTTGAACACTGCCG 59.688 50.000 6.60 0.00 0.00 5.69
2473 2550 0.534877 ACATGCTTGAACACTGCCGA 60.535 50.000 6.60 0.00 0.00 5.54
2474 2551 0.592637 CATGCTTGAACACTGCCGAA 59.407 50.000 0.00 0.00 0.00 4.30
2475 2552 1.001487 CATGCTTGAACACTGCCGAAA 60.001 47.619 0.00 0.00 0.00 3.46
2476 2553 1.317613 TGCTTGAACACTGCCGAAAT 58.682 45.000 0.00 0.00 0.00 2.17
2477 2554 2.499197 TGCTTGAACACTGCCGAAATA 58.501 42.857 0.00 0.00 0.00 1.40
2478 2555 2.881513 TGCTTGAACACTGCCGAAATAA 59.118 40.909 0.00 0.00 0.00 1.40
2479 2556 3.316588 TGCTTGAACACTGCCGAAATAAA 59.683 39.130 0.00 0.00 0.00 1.40
2480 2557 3.914364 GCTTGAACACTGCCGAAATAAAG 59.086 43.478 0.00 0.00 0.00 1.85
2481 2558 3.552604 TGAACACTGCCGAAATAAAGC 57.447 42.857 0.00 0.00 0.00 3.51
2482 2559 2.227865 TGAACACTGCCGAAATAAAGCC 59.772 45.455 0.00 0.00 0.00 4.35
2483 2560 1.904287 ACACTGCCGAAATAAAGCCA 58.096 45.000 0.00 0.00 0.00 4.75
2484 2561 1.539827 ACACTGCCGAAATAAAGCCAC 59.460 47.619 0.00 0.00 0.00 5.01
2485 2562 0.802494 ACTGCCGAAATAAAGCCACG 59.198 50.000 0.00 0.00 0.00 4.94
2486 2563 1.083489 CTGCCGAAATAAAGCCACGA 58.917 50.000 0.00 0.00 0.00 4.35
2487 2564 1.062587 CTGCCGAAATAAAGCCACGAG 59.937 52.381 0.00 0.00 0.00 4.18
2488 2565 1.338294 TGCCGAAATAAAGCCACGAGA 60.338 47.619 0.00 0.00 0.00 4.04
2489 2566 1.735571 GCCGAAATAAAGCCACGAGAA 59.264 47.619 0.00 0.00 0.00 2.87
2490 2567 2.223044 GCCGAAATAAAGCCACGAGAAG 60.223 50.000 0.00 0.00 0.00 2.85
2491 2568 2.223044 CCGAAATAAAGCCACGAGAAGC 60.223 50.000 0.00 0.00 0.00 3.86
2492 2569 2.415168 CGAAATAAAGCCACGAGAAGCA 59.585 45.455 0.00 0.00 0.00 3.91
2493 2570 3.120338 CGAAATAAAGCCACGAGAAGCAA 60.120 43.478 0.00 0.00 0.00 3.91
2494 2571 4.406943 GAAATAAAGCCACGAGAAGCAAG 58.593 43.478 0.00 0.00 0.00 4.01
2495 2572 2.543777 TAAAGCCACGAGAAGCAAGT 57.456 45.000 0.00 0.00 0.00 3.16
2496 2573 1.680338 AAAGCCACGAGAAGCAAGTT 58.320 45.000 0.00 0.00 0.00 2.66
2497 2574 1.680338 AAGCCACGAGAAGCAAGTTT 58.320 45.000 0.00 0.00 0.00 2.66
2498 2575 0.947244 AGCCACGAGAAGCAAGTTTG 59.053 50.000 0.00 0.00 0.00 2.93
2499 2576 0.944386 GCCACGAGAAGCAAGTTTGA 59.056 50.000 0.00 0.00 0.00 2.69
2500 2577 1.537202 GCCACGAGAAGCAAGTTTGAT 59.463 47.619 0.00 0.00 0.00 2.57
2501 2578 2.030805 GCCACGAGAAGCAAGTTTGATT 60.031 45.455 0.00 0.00 39.84 2.57
2502 2579 3.550842 GCCACGAGAAGCAAGTTTGATTT 60.551 43.478 0.00 0.00 36.85 2.17
2503 2580 4.222114 CCACGAGAAGCAAGTTTGATTTC 58.778 43.478 0.00 0.32 36.85 2.17
2504 2581 4.023707 CCACGAGAAGCAAGTTTGATTTCT 60.024 41.667 10.07 10.07 36.85 2.52
2505 2582 5.506317 CCACGAGAAGCAAGTTTGATTTCTT 60.506 40.000 11.03 0.06 36.85 2.52
2506 2583 5.973565 CACGAGAAGCAAGTTTGATTTCTTT 59.026 36.000 11.03 3.24 36.85 2.52
2507 2584 7.132213 CACGAGAAGCAAGTTTGATTTCTTTA 58.868 34.615 11.03 0.00 36.85 1.85
2508 2585 7.643764 CACGAGAAGCAAGTTTGATTTCTTTAA 59.356 33.333 11.03 0.00 36.85 1.52
2509 2586 7.644157 ACGAGAAGCAAGTTTGATTTCTTTAAC 59.356 33.333 11.03 0.00 36.85 2.01
2510 2587 7.643764 CGAGAAGCAAGTTTGATTTCTTTAACA 59.356 33.333 11.03 0.00 36.85 2.41
2511 2588 9.301153 GAGAAGCAAGTTTGATTTCTTTAACAA 57.699 29.630 11.03 0.00 36.85 2.83
2512 2589 9.087424 AGAAGCAAGTTTGATTTCTTTAACAAC 57.913 29.630 0.00 0.00 36.85 3.32
2513 2590 9.087424 GAAGCAAGTTTGATTTCTTTAACAACT 57.913 29.630 0.00 0.00 36.85 3.16
2514 2591 8.411318 AGCAAGTTTGATTTCTTTAACAACTG 57.589 30.769 0.00 0.00 0.00 3.16
2515 2592 8.250332 AGCAAGTTTGATTTCTTTAACAACTGA 58.750 29.630 0.00 0.00 0.00 3.41
2516 2593 8.868916 GCAAGTTTGATTTCTTTAACAACTGAA 58.131 29.630 0.00 0.00 0.00 3.02
2518 2595 8.926715 AGTTTGATTTCTTTAACAACTGAACC 57.073 30.769 0.00 0.00 0.00 3.62
2519 2596 8.527810 AGTTTGATTTCTTTAACAACTGAACCA 58.472 29.630 0.00 0.00 0.00 3.67
2520 2597 9.145865 GTTTGATTTCTTTAACAACTGAACCAA 57.854 29.630 0.00 0.00 0.00 3.67
2521 2598 9.883142 TTTGATTTCTTTAACAACTGAACCAAT 57.117 25.926 0.00 0.00 0.00 3.16
2522 2599 8.870160 TGATTTCTTTAACAACTGAACCAATG 57.130 30.769 0.00 0.00 0.00 2.82
2523 2600 7.437862 TGATTTCTTTAACAACTGAACCAATGC 59.562 33.333 0.00 0.00 0.00 3.56
2524 2601 5.195001 TCTTTAACAACTGAACCAATGCC 57.805 39.130 0.00 0.00 0.00 4.40
2525 2602 4.892934 TCTTTAACAACTGAACCAATGCCT 59.107 37.500 0.00 0.00 0.00 4.75
2526 2603 4.582701 TTAACAACTGAACCAATGCCTG 57.417 40.909 0.00 0.00 0.00 4.85
2527 2604 2.363306 ACAACTGAACCAATGCCTGA 57.637 45.000 0.00 0.00 0.00 3.86
2528 2605 2.233271 ACAACTGAACCAATGCCTGAG 58.767 47.619 0.00 0.00 0.00 3.35
2529 2606 1.068055 CAACTGAACCAATGCCTGAGC 60.068 52.381 0.00 0.00 40.48 4.26
2530 2607 0.957395 ACTGAACCAATGCCTGAGCG 60.957 55.000 0.00 0.00 44.31 5.03
2531 2608 0.674581 CTGAACCAATGCCTGAGCGA 60.675 55.000 0.00 0.00 44.31 4.93
2532 2609 0.035152 TGAACCAATGCCTGAGCGAT 60.035 50.000 0.00 0.00 44.31 4.58
2533 2610 0.659957 GAACCAATGCCTGAGCGATC 59.340 55.000 0.00 0.00 44.31 3.69
2534 2611 0.035152 AACCAATGCCTGAGCGATCA 60.035 50.000 2.19 2.19 44.31 2.92
2535 2612 0.182061 ACCAATGCCTGAGCGATCAT 59.818 50.000 2.72 0.00 44.31 2.45
2536 2613 0.591659 CCAATGCCTGAGCGATCATG 59.408 55.000 2.72 1.88 44.31 3.07
2537 2614 1.306148 CAATGCCTGAGCGATCATGT 58.694 50.000 2.72 0.00 44.31 3.21
2538 2615 1.263484 CAATGCCTGAGCGATCATGTC 59.737 52.381 2.72 0.00 44.31 3.06
2539 2616 0.250209 ATGCCTGAGCGATCATGTCC 60.250 55.000 2.72 0.00 44.31 4.02
2540 2617 1.144716 GCCTGAGCGATCATGTCCA 59.855 57.895 2.72 0.00 0.00 4.02
2541 2618 0.879400 GCCTGAGCGATCATGTCCAG 60.879 60.000 2.72 0.00 0.00 3.86
2542 2619 0.749049 CCTGAGCGATCATGTCCAGA 59.251 55.000 2.72 0.00 0.00 3.86
2543 2620 1.269673 CCTGAGCGATCATGTCCAGAG 60.270 57.143 2.72 0.00 0.00 3.35
2544 2621 1.408340 CTGAGCGATCATGTCCAGAGT 59.592 52.381 2.72 0.00 0.00 3.24
2545 2622 2.620585 CTGAGCGATCATGTCCAGAGTA 59.379 50.000 2.72 0.00 0.00 2.59
2546 2623 3.225940 TGAGCGATCATGTCCAGAGTAT 58.774 45.455 0.00 0.00 0.00 2.12
2547 2624 3.254411 TGAGCGATCATGTCCAGAGTATC 59.746 47.826 0.00 0.00 0.00 2.24
2561 2638 3.438297 GAGTATCTTCCGCACTAGCAA 57.562 47.619 0.00 0.00 42.27 3.91
2562 2639 3.983741 GAGTATCTTCCGCACTAGCAAT 58.016 45.455 0.00 0.00 42.27 3.56
2563 2640 4.372656 GAGTATCTTCCGCACTAGCAATT 58.627 43.478 0.00 0.00 42.27 2.32
2564 2641 4.122776 AGTATCTTCCGCACTAGCAATTG 58.877 43.478 0.00 0.00 42.27 2.32
2565 2642 1.737838 TCTTCCGCACTAGCAATTGG 58.262 50.000 7.72 0.00 42.27 3.16
2566 2643 0.099436 CTTCCGCACTAGCAATTGGC 59.901 55.000 7.72 0.38 42.27 4.52
2576 2653 1.433471 GCAATTGGCGGTAAGAGGC 59.567 57.895 7.72 0.00 0.00 4.70
2577 2654 1.312371 GCAATTGGCGGTAAGAGGCA 61.312 55.000 7.72 0.00 42.55 4.75
2580 2657 4.713946 TGGCGGTAAGAGGCAAAG 57.286 55.556 0.00 0.00 41.29 2.77
2581 2658 2.062922 TGGCGGTAAGAGGCAAAGA 58.937 52.632 0.00 0.00 41.29 2.52
2582 2659 0.618458 TGGCGGTAAGAGGCAAAGAT 59.382 50.000 0.00 0.00 41.29 2.40
2583 2660 1.834896 TGGCGGTAAGAGGCAAAGATA 59.165 47.619 0.00 0.00 41.29 1.98
2584 2661 2.237643 TGGCGGTAAGAGGCAAAGATAA 59.762 45.455 0.00 0.00 41.29 1.75
2585 2662 2.612672 GGCGGTAAGAGGCAAAGATAAC 59.387 50.000 0.00 0.00 0.00 1.89
2586 2663 2.612672 GCGGTAAGAGGCAAAGATAACC 59.387 50.000 0.00 0.00 0.00 2.85
2587 2664 3.681874 GCGGTAAGAGGCAAAGATAACCT 60.682 47.826 0.00 0.00 36.19 3.50
2588 2665 4.514401 CGGTAAGAGGCAAAGATAACCTT 58.486 43.478 0.00 0.00 36.47 3.50
2589 2666 4.332819 CGGTAAGAGGCAAAGATAACCTTG 59.667 45.833 0.00 0.00 34.79 3.61
2590 2667 4.640647 GGTAAGAGGCAAAGATAACCTTGG 59.359 45.833 0.00 0.00 34.79 3.61
2591 2668 4.388577 AAGAGGCAAAGATAACCTTGGT 57.611 40.909 0.00 0.00 34.79 3.67
2592 2669 3.690460 AGAGGCAAAGATAACCTTGGTG 58.310 45.455 0.00 0.00 34.79 4.17
2593 2670 3.330701 AGAGGCAAAGATAACCTTGGTGA 59.669 43.478 0.00 0.00 34.79 4.02
2594 2671 4.079253 GAGGCAAAGATAACCTTGGTGAA 58.921 43.478 0.00 0.00 34.79 3.18
2595 2672 4.479158 AGGCAAAGATAACCTTGGTGAAA 58.521 39.130 0.00 0.00 34.79 2.69
2596 2673 4.280929 AGGCAAAGATAACCTTGGTGAAAC 59.719 41.667 0.00 0.00 34.79 2.78
2597 2674 8.452817 GAGGCAAAGATAACCTTGGTGAAACC 62.453 46.154 0.00 0.00 46.77 3.27
2610 2687 2.087646 GTGAAACCTTCATCTCTGGCC 58.912 52.381 0.00 0.00 42.47 5.36
2611 2688 1.704628 TGAAACCTTCATCTCTGGCCA 59.295 47.619 4.71 4.71 34.08 5.36
2612 2689 2.290514 TGAAACCTTCATCTCTGGCCAG 60.291 50.000 27.87 27.87 34.08 4.85
2613 2690 0.622665 AACCTTCATCTCTGGCCAGG 59.377 55.000 32.23 22.04 0.00 4.45
2614 2691 0.548682 ACCTTCATCTCTGGCCAGGT 60.549 55.000 32.23 17.80 0.00 4.00
2615 2692 1.273838 ACCTTCATCTCTGGCCAGGTA 60.274 52.381 32.23 20.52 32.66 3.08
2616 2693 1.139853 CCTTCATCTCTGGCCAGGTAC 59.860 57.143 32.23 0.00 0.00 3.34
2617 2694 1.833630 CTTCATCTCTGGCCAGGTACA 59.166 52.381 32.23 12.44 0.00 2.90
2618 2695 1.195115 TCATCTCTGGCCAGGTACAC 58.805 55.000 32.23 0.00 0.00 2.90
2619 2696 1.198713 CATCTCTGGCCAGGTACACT 58.801 55.000 32.23 8.94 0.00 3.55
2621 2698 1.078848 CTCTGGCCAGGTACACTGC 60.079 63.158 32.23 0.00 46.14 4.40
2622 2699 2.045926 CTGGCCAGGTACACTGCC 60.046 66.667 26.14 10.80 46.14 4.85
2623 2700 3.628646 CTGGCCAGGTACACTGCCC 62.629 68.421 26.14 9.52 44.89 5.36
2624 2701 3.330720 GGCCAGGTACACTGCCCT 61.331 66.667 0.00 0.00 46.14 5.19
2625 2702 2.269241 GCCAGGTACACTGCCCTC 59.731 66.667 0.00 0.00 46.14 4.30
2626 2703 2.990479 CCAGGTACACTGCCCTCC 59.010 66.667 0.00 0.00 46.14 4.30
2627 2704 1.613630 CCAGGTACACTGCCCTCCT 60.614 63.158 0.00 0.00 46.14 3.69
2628 2705 1.201429 CCAGGTACACTGCCCTCCTT 61.201 60.000 0.00 0.00 46.14 3.36
2629 2706 1.568504 CAGGTACACTGCCCTCCTTA 58.431 55.000 0.00 0.00 40.97 2.69
2630 2707 1.482593 CAGGTACACTGCCCTCCTTAG 59.517 57.143 0.00 0.00 40.97 2.18
2631 2708 1.361543 AGGTACACTGCCCTCCTTAGA 59.638 52.381 0.00 0.00 0.00 2.10
2632 2709 1.757699 GGTACACTGCCCTCCTTAGAG 59.242 57.143 0.00 0.00 40.09 2.43
2633 2710 1.137282 GTACACTGCCCTCCTTAGAGC 59.863 57.143 0.00 0.00 38.96 4.09
2634 2711 0.545309 ACACTGCCCTCCTTAGAGCA 60.545 55.000 0.00 0.00 38.96 4.26
2635 2712 0.615331 CACTGCCCTCCTTAGAGCAA 59.385 55.000 0.00 0.00 38.96 3.91
2636 2713 0.908198 ACTGCCCTCCTTAGAGCAAG 59.092 55.000 0.00 0.00 38.96 4.01
2645 2722 2.307934 CTTAGAGCAAGGGTCTCTGC 57.692 55.000 0.64 0.00 40.94 4.26
2646 2723 0.905357 TTAGAGCAAGGGTCTCTGCC 59.095 55.000 0.64 0.00 40.94 4.85
2647 2724 0.252239 TAGAGCAAGGGTCTCTGCCA 60.252 55.000 0.64 0.00 40.94 4.92
2648 2725 1.130054 AGAGCAAGGGTCTCTGCCAA 61.130 55.000 0.00 0.00 39.29 4.52
2649 2726 0.034670 GAGCAAGGGTCTCTGCCAAT 60.035 55.000 0.00 0.00 0.00 3.16
2650 2727 0.407139 AGCAAGGGTCTCTGCCAATT 59.593 50.000 0.00 0.00 0.00 2.32
2651 2728 1.203100 AGCAAGGGTCTCTGCCAATTT 60.203 47.619 0.00 0.00 0.00 1.82
2652 2729 1.620323 GCAAGGGTCTCTGCCAATTTT 59.380 47.619 0.00 0.00 0.00 1.82
2653 2730 2.611224 GCAAGGGTCTCTGCCAATTTTG 60.611 50.000 0.00 0.00 0.00 2.44
2663 2740 3.933879 CCAATTTTGGTTCCAGGGC 57.066 52.632 0.95 0.00 43.43 5.19
2664 2741 1.055040 CCAATTTTGGTTCCAGGGCA 58.945 50.000 0.95 0.00 43.43 5.36
2665 2742 1.270785 CCAATTTTGGTTCCAGGGCAC 60.271 52.381 0.95 0.00 43.43 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.468689 GACACCAGGCCCTACCGC 62.469 72.222 0.00 0.00 46.52 5.68
35 36 1.473278 GAGTAGAACACGGGAGACAGG 59.527 57.143 0.00 0.00 0.00 4.00
37 38 2.581216 AGAGTAGAACACGGGAGACA 57.419 50.000 0.00 0.00 0.00 3.41
44 45 2.474196 CGACGAGGAAGAGTAGAACACG 60.474 54.545 0.00 0.00 0.00 4.49
55 56 1.514443 GCGGTCTTCGACGAGGAAG 60.514 63.158 11.59 9.85 43.78 3.46
66 67 0.468226 TGAAGTGAAGGTGCGGTCTT 59.532 50.000 0.00 0.00 0.00 3.01
81 82 0.870307 CGGCGATAAGACCCGTGAAG 60.870 60.000 0.00 0.00 37.36 3.02
157 158 1.622312 CCCCTAAACCTATCCTACGGC 59.378 57.143 0.00 0.00 0.00 5.68
199 205 4.156922 ACGGCGGATTTTCATTACATTTCA 59.843 37.500 13.24 0.00 0.00 2.69
217 223 1.063469 GGGATTCATACAAACACGGCG 59.937 52.381 4.80 4.80 0.00 6.46
263 270 2.853594 CCGGATGAAATTCATGCAAACG 59.146 45.455 23.55 14.28 44.18 3.60
271 278 5.521906 TTCAACAAACCGGATGAAATTCA 57.478 34.783 9.46 0.00 0.00 2.57
282 289 6.698359 TTCAAACTCTTTTTCAACAAACCG 57.302 33.333 0.00 0.00 0.00 4.44
283 290 8.503196 ACATTTCAAACTCTTTTTCAACAAACC 58.497 29.630 0.00 0.00 0.00 3.27
345 352 2.926586 GCAACCCGCAAATTTTCTCCTC 60.927 50.000 0.00 0.00 41.79 3.71
367 410 1.942657 CATGTTAGGGCATCTCCAACG 59.057 52.381 0.00 0.00 36.21 4.10
852 920 0.682855 TGGCGGGATTGATTTGGTCC 60.683 55.000 0.00 0.00 0.00 4.46
1012 1080 0.974383 CCCACAGGTAGTCGAAGGTT 59.026 55.000 0.00 0.00 0.00 3.50
1050 1118 1.457831 GAGGAGGGCAGATACGGGT 60.458 63.158 0.00 0.00 0.00 5.28
1230 1301 4.862092 CCGATGCTCGCGCTCTGT 62.862 66.667 5.56 0.00 38.82 3.41
1263 1334 1.300620 CACGAACTCGCCCTTGTGA 60.301 57.895 0.00 0.00 44.43 3.58
1692 1765 6.205853 AGAGATCACGACCAGAGTAATGTATC 59.794 42.308 0.00 0.00 0.00 2.24
1703 1776 2.416566 CCAACAGAGAGATCACGACCAG 60.417 54.545 0.00 0.00 0.00 4.00
1736 1809 0.812811 ATTGATCTGCGAGCATGCGT 60.813 50.000 13.01 0.00 37.81 5.24
1862 1935 8.092687 GGTGAGACAATCAAAGGTTAGTAGTTA 58.907 37.037 0.00 0.00 40.43 2.24
2002 2076 9.236006 AGTAAAATCTGCTGAGATAACACATTT 57.764 29.630 0.00 0.00 38.03 2.32
2003 2077 8.798859 AGTAAAATCTGCTGAGATAACACATT 57.201 30.769 0.00 0.00 38.03 2.71
2004 2078 9.890629 TTAGTAAAATCTGCTGAGATAACACAT 57.109 29.630 0.00 0.00 38.03 3.21
2033 2107 2.294479 GGTGACGATTTGTGTGAACG 57.706 50.000 0.00 0.00 0.00 3.95
2113 2190 8.548721 CGCGTCTCATTTAAGGTTCTTATTTAT 58.451 33.333 0.00 0.00 0.00 1.40
2114 2191 7.760794 TCGCGTCTCATTTAAGGTTCTTATTTA 59.239 33.333 5.77 0.00 0.00 1.40
2115 2192 6.592607 TCGCGTCTCATTTAAGGTTCTTATTT 59.407 34.615 5.77 0.00 0.00 1.40
2116 2193 6.035758 GTCGCGTCTCATTTAAGGTTCTTATT 59.964 38.462 5.77 0.00 0.00 1.40
2117 2194 5.519206 GTCGCGTCTCATTTAAGGTTCTTAT 59.481 40.000 5.77 0.00 0.00 1.73
2118 2195 4.860907 GTCGCGTCTCATTTAAGGTTCTTA 59.139 41.667 5.77 0.00 0.00 2.10
2119 2196 3.678548 GTCGCGTCTCATTTAAGGTTCTT 59.321 43.478 5.77 0.00 0.00 2.52
2120 2197 3.056749 AGTCGCGTCTCATTTAAGGTTCT 60.057 43.478 5.77 0.00 0.00 3.01
2121 2198 3.060895 CAGTCGCGTCTCATTTAAGGTTC 59.939 47.826 5.77 0.00 0.00 3.62
2122 2199 2.993899 CAGTCGCGTCTCATTTAAGGTT 59.006 45.455 5.77 0.00 0.00 3.50
2123 2200 2.607187 CAGTCGCGTCTCATTTAAGGT 58.393 47.619 5.77 0.00 0.00 3.50
2124 2201 1.927174 CCAGTCGCGTCTCATTTAAGG 59.073 52.381 5.77 0.00 0.00 2.69
2125 2202 2.854777 CTCCAGTCGCGTCTCATTTAAG 59.145 50.000 5.77 0.00 0.00 1.85
2126 2203 2.230508 ACTCCAGTCGCGTCTCATTTAA 59.769 45.455 5.77 0.00 0.00 1.52
2127 2204 1.816835 ACTCCAGTCGCGTCTCATTTA 59.183 47.619 5.77 0.00 0.00 1.40
2128 2205 0.603569 ACTCCAGTCGCGTCTCATTT 59.396 50.000 5.77 0.00 0.00 2.32
2129 2206 1.402259 CTACTCCAGTCGCGTCTCATT 59.598 52.381 5.77 0.00 0.00 2.57
2130 2207 1.018148 CTACTCCAGTCGCGTCTCAT 58.982 55.000 5.77 0.00 0.00 2.90
2131 2208 0.321387 ACTACTCCAGTCGCGTCTCA 60.321 55.000 5.77 0.00 28.33 3.27
2132 2209 1.327156 GTACTACTCCAGTCGCGTCTC 59.673 57.143 5.77 0.00 38.80 3.36
2133 2210 1.367659 GTACTACTCCAGTCGCGTCT 58.632 55.000 5.77 1.88 38.80 4.18
2134 2211 0.026027 CGTACTACTCCAGTCGCGTC 59.974 60.000 5.77 0.00 38.80 5.19
2135 2212 0.390340 TCGTACTACTCCAGTCGCGT 60.390 55.000 5.77 0.00 38.80 6.01
2136 2213 0.723414 TTCGTACTACTCCAGTCGCG 59.277 55.000 0.00 0.00 38.80 5.87
2137 2214 3.559242 ACTATTCGTACTACTCCAGTCGC 59.441 47.826 0.00 0.00 38.80 5.19
2138 2215 5.107530 GCTACTATTCGTACTACTCCAGTCG 60.108 48.000 0.00 0.00 38.80 4.18
2139 2216 5.990996 AGCTACTATTCGTACTACTCCAGTC 59.009 44.000 0.00 0.00 38.80 3.51
2140 2217 5.927819 AGCTACTATTCGTACTACTCCAGT 58.072 41.667 0.00 0.00 41.62 4.00
2141 2218 6.225318 AGAGCTACTATTCGTACTACTCCAG 58.775 44.000 0.00 0.00 0.00 3.86
2142 2219 6.172136 AGAGCTACTATTCGTACTACTCCA 57.828 41.667 0.00 0.00 0.00 3.86
2143 2220 6.147656 GGAAGAGCTACTATTCGTACTACTCC 59.852 46.154 0.00 0.00 33.12 3.85
2144 2221 6.705381 TGGAAGAGCTACTATTCGTACTACTC 59.295 42.308 0.00 0.00 33.12 2.59
2145 2222 6.590068 TGGAAGAGCTACTATTCGTACTACT 58.410 40.000 0.00 0.00 33.12 2.57
2146 2223 6.857777 TGGAAGAGCTACTATTCGTACTAC 57.142 41.667 0.00 0.00 33.12 2.73
2147 2224 7.870509 TTTGGAAGAGCTACTATTCGTACTA 57.129 36.000 0.00 0.00 33.12 1.82
2148 2225 6.770746 TTTGGAAGAGCTACTATTCGTACT 57.229 37.500 0.00 0.00 33.12 2.73
2149 2226 7.516943 GCAATTTGGAAGAGCTACTATTCGTAC 60.517 40.741 0.00 0.00 33.12 3.67
2150 2227 6.479001 GCAATTTGGAAGAGCTACTATTCGTA 59.521 38.462 0.00 0.00 33.12 3.43
2151 2228 5.294552 GCAATTTGGAAGAGCTACTATTCGT 59.705 40.000 0.00 0.00 33.12 3.85
2152 2229 5.294306 TGCAATTTGGAAGAGCTACTATTCG 59.706 40.000 0.00 0.00 33.12 3.34
2153 2230 6.683974 TGCAATTTGGAAGAGCTACTATTC 57.316 37.500 0.00 0.00 31.75 1.75
2154 2231 6.604795 ACATGCAATTTGGAAGAGCTACTATT 59.395 34.615 0.00 0.00 0.00 1.73
2155 2232 6.039047 CACATGCAATTTGGAAGAGCTACTAT 59.961 38.462 0.00 0.00 0.00 2.12
2156 2233 5.355071 CACATGCAATTTGGAAGAGCTACTA 59.645 40.000 0.00 0.00 0.00 1.82
2157 2234 4.157289 CACATGCAATTTGGAAGAGCTACT 59.843 41.667 0.00 0.00 0.00 2.57
2158 2235 4.156556 TCACATGCAATTTGGAAGAGCTAC 59.843 41.667 0.00 0.00 0.00 3.58
2159 2236 4.334552 TCACATGCAATTTGGAAGAGCTA 58.665 39.130 0.00 0.00 0.00 3.32
2160 2237 3.159472 TCACATGCAATTTGGAAGAGCT 58.841 40.909 0.00 0.00 0.00 4.09
2161 2238 3.581024 TCACATGCAATTTGGAAGAGC 57.419 42.857 0.00 0.00 0.00 4.09
2175 2252 2.892374 TGAAGTAGTCGGCATCACATG 58.108 47.619 0.00 0.00 0.00 3.21
2176 2253 3.827008 ATGAAGTAGTCGGCATCACAT 57.173 42.857 0.00 0.00 0.00 3.21
2177 2254 3.699538 AGTATGAAGTAGTCGGCATCACA 59.300 43.478 0.00 0.00 0.00 3.58
2178 2255 4.291783 GAGTATGAAGTAGTCGGCATCAC 58.708 47.826 0.00 0.00 0.00 3.06
2179 2256 3.318275 GGAGTATGAAGTAGTCGGCATCA 59.682 47.826 0.00 0.00 34.18 3.07
2180 2257 3.318275 TGGAGTATGAAGTAGTCGGCATC 59.682 47.826 0.00 0.00 34.18 3.91
2181 2258 3.068307 GTGGAGTATGAAGTAGTCGGCAT 59.932 47.826 0.00 0.00 34.18 4.40
2182 2259 2.426024 GTGGAGTATGAAGTAGTCGGCA 59.574 50.000 0.00 0.00 34.18 5.69
2183 2260 2.426024 TGTGGAGTATGAAGTAGTCGGC 59.574 50.000 0.00 0.00 34.18 5.54
2184 2261 4.499865 CCATGTGGAGTATGAAGTAGTCGG 60.500 50.000 0.00 0.00 37.39 4.79
2185 2262 4.611943 CCATGTGGAGTATGAAGTAGTCG 58.388 47.826 0.00 0.00 37.39 4.18
2186 2263 4.100189 AGCCATGTGGAGTATGAAGTAGTC 59.900 45.833 2.55 0.00 37.39 2.59
2187 2264 4.033709 AGCCATGTGGAGTATGAAGTAGT 58.966 43.478 2.55 0.00 37.39 2.73
2188 2265 4.100035 TGAGCCATGTGGAGTATGAAGTAG 59.900 45.833 2.55 0.00 37.39 2.57
2189 2266 4.030216 TGAGCCATGTGGAGTATGAAGTA 58.970 43.478 2.55 0.00 37.39 2.24
2190 2267 2.840038 TGAGCCATGTGGAGTATGAAGT 59.160 45.455 2.55 0.00 37.39 3.01
2191 2268 3.548745 TGAGCCATGTGGAGTATGAAG 57.451 47.619 2.55 0.00 37.39 3.02
2192 2269 3.434024 CCATGAGCCATGTGGAGTATGAA 60.434 47.826 2.55 0.00 39.94 2.57
2193 2270 2.105306 CCATGAGCCATGTGGAGTATGA 59.895 50.000 2.55 0.00 39.94 2.15
2194 2271 2.501261 CCATGAGCCATGTGGAGTATG 58.499 52.381 2.55 3.52 39.94 2.39
2195 2272 1.202855 GCCATGAGCCATGTGGAGTAT 60.203 52.381 2.55 0.00 39.94 2.12
2196 2273 0.181114 GCCATGAGCCATGTGGAGTA 59.819 55.000 2.55 0.00 39.94 2.59
2197 2274 1.077212 GCCATGAGCCATGTGGAGT 60.077 57.895 2.55 0.00 39.94 3.85
2198 2275 3.837578 GCCATGAGCCATGTGGAG 58.162 61.111 2.55 1.44 39.94 3.86
2207 2284 2.093341 ACCAAATGAAATGGCCATGAGC 60.093 45.455 21.63 12.27 41.89 4.26
2208 2285 3.196039 TGACCAAATGAAATGGCCATGAG 59.804 43.478 21.63 4.60 41.89 2.90
2209 2286 3.055963 GTGACCAAATGAAATGGCCATGA 60.056 43.478 21.63 6.93 41.89 3.07
2210 2287 3.055675 AGTGACCAAATGAAATGGCCATG 60.056 43.478 21.63 6.08 41.89 3.66
2211 2288 3.175594 AGTGACCAAATGAAATGGCCAT 58.824 40.909 14.09 14.09 41.89 4.40
2212 2289 2.607499 AGTGACCAAATGAAATGGCCA 58.393 42.857 8.56 8.56 41.89 5.36
2213 2290 3.763897 ACTAGTGACCAAATGAAATGGCC 59.236 43.478 0.00 0.00 41.89 5.36
2214 2291 4.218417 ACACTAGTGACCAAATGAAATGGC 59.782 41.667 29.30 0.00 41.89 4.40
2215 2292 5.707298 AGACACTAGTGACCAAATGAAATGG 59.293 40.000 29.30 0.00 43.84 3.16
2216 2293 6.808008 AGACACTAGTGACCAAATGAAATG 57.192 37.500 29.30 0.00 0.00 2.32
2217 2294 8.375506 TCTTAGACACTAGTGACCAAATGAAAT 58.624 33.333 29.30 6.54 0.00 2.17
2218 2295 7.732025 TCTTAGACACTAGTGACCAAATGAAA 58.268 34.615 29.30 8.62 0.00 2.69
2219 2296 7.297936 TCTTAGACACTAGTGACCAAATGAA 57.702 36.000 29.30 9.84 0.00 2.57
2220 2297 6.911250 TCTTAGACACTAGTGACCAAATGA 57.089 37.500 29.30 14.61 0.00 2.57
2221 2298 6.591834 CCTTCTTAGACACTAGTGACCAAATG 59.408 42.308 29.30 12.84 0.00 2.32
2222 2299 6.270231 ACCTTCTTAGACACTAGTGACCAAAT 59.730 38.462 29.30 9.68 0.00 2.32
2223 2300 5.601313 ACCTTCTTAGACACTAGTGACCAAA 59.399 40.000 29.30 17.52 0.00 3.28
2224 2301 5.010719 CACCTTCTTAGACACTAGTGACCAA 59.989 44.000 29.30 16.77 0.00 3.67
2225 2302 4.523173 CACCTTCTTAGACACTAGTGACCA 59.477 45.833 29.30 9.74 0.00 4.02
2226 2303 4.765856 TCACCTTCTTAGACACTAGTGACC 59.234 45.833 29.30 18.69 0.00 4.02
2227 2304 5.106078 CCTCACCTTCTTAGACACTAGTGAC 60.106 48.000 29.30 22.53 0.00 3.67
2228 2305 5.010933 CCTCACCTTCTTAGACACTAGTGA 58.989 45.833 29.30 4.07 0.00 3.41
2229 2306 5.010933 TCCTCACCTTCTTAGACACTAGTG 58.989 45.833 21.44 21.44 0.00 2.74
2230 2307 5.014333 TCTCCTCACCTTCTTAGACACTAGT 59.986 44.000 0.00 0.00 0.00 2.57
2231 2308 5.502079 TCTCCTCACCTTCTTAGACACTAG 58.498 45.833 0.00 0.00 0.00 2.57
2232 2309 5.251005 TCTCTCCTCACCTTCTTAGACACTA 59.749 44.000 0.00 0.00 0.00 2.74
2233 2310 4.043561 TCTCTCCTCACCTTCTTAGACACT 59.956 45.833 0.00 0.00 0.00 3.55
2234 2311 4.337145 TCTCTCCTCACCTTCTTAGACAC 58.663 47.826 0.00 0.00 0.00 3.67
2235 2312 4.659529 TCTCTCCTCACCTTCTTAGACA 57.340 45.455 0.00 0.00 0.00 3.41
2236 2313 7.833285 ATTATCTCTCCTCACCTTCTTAGAC 57.167 40.000 0.00 0.00 0.00 2.59
2237 2314 8.846423 AAATTATCTCTCCTCACCTTCTTAGA 57.154 34.615 0.00 0.00 0.00 2.10
2238 2315 8.700051 TGAAATTATCTCTCCTCACCTTCTTAG 58.300 37.037 0.00 0.00 0.00 2.18
2239 2316 8.609617 TGAAATTATCTCTCCTCACCTTCTTA 57.390 34.615 0.00 0.00 0.00 2.10
2240 2317 7.502060 TGAAATTATCTCTCCTCACCTTCTT 57.498 36.000 0.00 0.00 0.00 2.52
2241 2318 7.127032 ACATGAAATTATCTCTCCTCACCTTCT 59.873 37.037 0.00 0.00 0.00 2.85
2242 2319 7.278875 ACATGAAATTATCTCTCCTCACCTTC 58.721 38.462 0.00 0.00 0.00 3.46
2243 2320 7.205515 ACATGAAATTATCTCTCCTCACCTT 57.794 36.000 0.00 0.00 0.00 3.50
2244 2321 6.821616 ACATGAAATTATCTCTCCTCACCT 57.178 37.500 0.00 0.00 0.00 4.00
2245 2322 6.825721 ACAACATGAAATTATCTCTCCTCACC 59.174 38.462 0.00 0.00 0.00 4.02
2246 2323 7.201679 CCACAACATGAAATTATCTCTCCTCAC 60.202 40.741 0.00 0.00 0.00 3.51
2247 2324 6.825213 CCACAACATGAAATTATCTCTCCTCA 59.175 38.462 0.00 0.00 0.00 3.86
2248 2325 7.050377 TCCACAACATGAAATTATCTCTCCTC 58.950 38.462 0.00 0.00 0.00 3.71
2249 2326 6.962182 TCCACAACATGAAATTATCTCTCCT 58.038 36.000 0.00 0.00 0.00 3.69
2250 2327 7.630242 TTCCACAACATGAAATTATCTCTCC 57.370 36.000 0.00 0.00 0.00 3.71
2251 2328 7.646922 GCATTCCACAACATGAAATTATCTCTC 59.353 37.037 0.00 0.00 0.00 3.20
2252 2329 7.123098 TGCATTCCACAACATGAAATTATCTCT 59.877 33.333 0.00 0.00 0.00 3.10
2253 2330 7.221452 GTGCATTCCACAACATGAAATTATCTC 59.779 37.037 0.00 0.00 44.06 2.75
2254 2331 7.037438 GTGCATTCCACAACATGAAATTATCT 58.963 34.615 0.00 0.00 44.06 1.98
2255 2332 7.225523 GTGCATTCCACAACATGAAATTATC 57.774 36.000 0.00 0.00 44.06 1.75
2267 2344 8.599979 GATCTCCAAGATATGTGCATTCCACAA 61.600 40.741 0.00 0.00 45.39 3.33
2268 2345 7.188385 GATCTCCAAGATATGTGCATTCCACA 61.188 42.308 0.00 0.00 45.88 4.17
2269 2346 4.454678 TCTCCAAGATATGTGCATTCCAC 58.545 43.478 0.00 0.00 44.90 4.02
2270 2347 4.776435 TCTCCAAGATATGTGCATTCCA 57.224 40.909 0.00 0.00 0.00 3.53
2271 2348 5.311265 TGATCTCCAAGATATGTGCATTCC 58.689 41.667 0.00 0.00 34.53 3.01
2272 2349 6.872628 TTGATCTCCAAGATATGTGCATTC 57.127 37.500 0.00 0.00 34.53 2.67
2301 2378 2.132762 GCCGACGTTCTCTCTCAAAAA 58.867 47.619 0.00 0.00 0.00 1.94
2302 2379 1.340248 AGCCGACGTTCTCTCTCAAAA 59.660 47.619 0.00 0.00 0.00 2.44
2303 2380 0.959553 AGCCGACGTTCTCTCTCAAA 59.040 50.000 0.00 0.00 0.00 2.69
2304 2381 0.959553 AAGCCGACGTTCTCTCTCAA 59.040 50.000 0.00 0.00 0.00 3.02
2305 2382 0.959553 AAAGCCGACGTTCTCTCTCA 59.040 50.000 0.00 0.00 0.00 3.27
2306 2383 2.915738 TAAAGCCGACGTTCTCTCTC 57.084 50.000 0.00 0.00 0.00 3.20
2307 2384 2.223294 CGATAAAGCCGACGTTCTCTCT 60.223 50.000 0.00 0.00 0.00 3.10
2308 2385 2.110226 CGATAAAGCCGACGTTCTCTC 58.890 52.381 0.00 0.00 0.00 3.20
2309 2386 1.741706 TCGATAAAGCCGACGTTCTCT 59.258 47.619 0.00 0.00 0.00 3.10
2310 2387 2.184385 TCGATAAAGCCGACGTTCTC 57.816 50.000 0.00 0.00 0.00 2.87
2311 2388 2.098607 TGATCGATAAAGCCGACGTTCT 59.901 45.455 0.00 0.00 38.97 3.01
2312 2389 2.215812 GTGATCGATAAAGCCGACGTTC 59.784 50.000 0.00 0.00 38.97 3.95
2313 2390 2.190981 GTGATCGATAAAGCCGACGTT 58.809 47.619 0.00 0.00 38.97 3.99
2314 2391 1.133598 TGTGATCGATAAAGCCGACGT 59.866 47.619 0.00 0.00 38.97 4.34
2315 2392 1.835121 TGTGATCGATAAAGCCGACG 58.165 50.000 0.00 0.00 38.97 5.12
2316 2393 4.143597 CGTTATGTGATCGATAAAGCCGAC 60.144 45.833 0.00 0.00 38.97 4.79
2317 2394 3.978855 CGTTATGTGATCGATAAAGCCGA 59.021 43.478 0.00 0.00 40.53 5.54
2318 2395 3.978855 TCGTTATGTGATCGATAAAGCCG 59.021 43.478 0.00 0.00 0.00 5.52
2319 2396 5.405571 ACATCGTTATGTGATCGATAAAGCC 59.594 40.000 0.00 0.00 44.79 4.35
2320 2397 6.453643 ACATCGTTATGTGATCGATAAAGC 57.546 37.500 0.00 0.00 44.79 3.51
2321 2398 8.964150 TGTAACATCGTTATGTGATCGATAAAG 58.036 33.333 0.00 0.00 45.79 1.85
2322 2399 8.748582 GTGTAACATCGTTATGTGATCGATAAA 58.251 33.333 0.00 0.00 45.79 1.40
2323 2400 7.916450 TGTGTAACATCGTTATGTGATCGATAA 59.084 33.333 0.00 0.00 45.67 1.75
2324 2401 7.419204 TGTGTAACATCGTTATGTGATCGATA 58.581 34.615 0.00 0.00 45.67 2.92
2325 2402 6.270064 TGTGTAACATCGTTATGTGATCGAT 58.730 36.000 0.00 0.00 45.67 3.59
2326 2403 5.642686 TGTGTAACATCGTTATGTGATCGA 58.357 37.500 0.00 0.00 45.67 3.59
2327 2404 5.942325 TGTGTAACATCGTTATGTGATCG 57.058 39.130 0.00 0.00 45.67 3.69
2342 2419 3.870633 ATCCGGAAGACTCTGTGTAAC 57.129 47.619 9.01 0.00 37.35 2.50
2343 2420 4.338012 TGTATCCGGAAGACTCTGTGTAA 58.662 43.478 9.01 0.00 0.00 2.41
2344 2421 3.959293 TGTATCCGGAAGACTCTGTGTA 58.041 45.455 9.01 0.00 0.00 2.90
2345 2422 2.803956 TGTATCCGGAAGACTCTGTGT 58.196 47.619 9.01 0.00 0.00 3.72
2346 2423 3.868757 TTGTATCCGGAAGACTCTGTG 57.131 47.619 9.01 0.00 0.00 3.66
2347 2424 3.385111 GGATTGTATCCGGAAGACTCTGT 59.615 47.826 9.01 0.00 40.13 3.41
2348 2425 3.983741 GGATTGTATCCGGAAGACTCTG 58.016 50.000 9.01 0.00 40.13 3.35
2359 2436 2.910688 TTCTGCTCCGGATTGTATCC 57.089 50.000 3.57 0.00 46.22 2.59
2360 2437 3.995199 TCATTCTGCTCCGGATTGTATC 58.005 45.455 3.57 0.00 0.00 2.24
2361 2438 4.422073 TTCATTCTGCTCCGGATTGTAT 57.578 40.909 3.57 0.00 0.00 2.29
2362 2439 3.904800 TTCATTCTGCTCCGGATTGTA 57.095 42.857 3.57 0.00 0.00 2.41
2363 2440 2.787473 TTCATTCTGCTCCGGATTGT 57.213 45.000 3.57 0.00 0.00 2.71
2364 2441 4.168760 GTTTTTCATTCTGCTCCGGATTG 58.831 43.478 3.57 0.00 0.00 2.67
2365 2442 3.826157 TGTTTTTCATTCTGCTCCGGATT 59.174 39.130 3.57 0.00 0.00 3.01
2366 2443 3.420893 TGTTTTTCATTCTGCTCCGGAT 58.579 40.909 3.57 0.00 0.00 4.18
2367 2444 2.857483 TGTTTTTCATTCTGCTCCGGA 58.143 42.857 2.93 2.93 0.00 5.14
2368 2445 3.243367 TGTTGTTTTTCATTCTGCTCCGG 60.243 43.478 0.00 0.00 0.00 5.14
2369 2446 3.963665 TGTTGTTTTTCATTCTGCTCCG 58.036 40.909 0.00 0.00 0.00 4.63
2370 2447 5.460091 GTCTTGTTGTTTTTCATTCTGCTCC 59.540 40.000 0.00 0.00 0.00 4.70
2371 2448 6.268566 AGTCTTGTTGTTTTTCATTCTGCTC 58.731 36.000 0.00 0.00 0.00 4.26
2372 2449 6.212888 AGTCTTGTTGTTTTTCATTCTGCT 57.787 33.333 0.00 0.00 0.00 4.24
2373 2450 7.417612 TCTAGTCTTGTTGTTTTTCATTCTGC 58.582 34.615 0.00 0.00 0.00 4.26
2374 2451 9.443283 CTTCTAGTCTTGTTGTTTTTCATTCTG 57.557 33.333 0.00 0.00 0.00 3.02
2375 2452 9.396022 TCTTCTAGTCTTGTTGTTTTTCATTCT 57.604 29.630 0.00 0.00 0.00 2.40
2376 2453 9.657121 CTCTTCTAGTCTTGTTGTTTTTCATTC 57.343 33.333 0.00 0.00 0.00 2.67
2377 2454 9.178758 ACTCTTCTAGTCTTGTTGTTTTTCATT 57.821 29.630 0.00 0.00 30.33 2.57
2378 2455 8.738645 ACTCTTCTAGTCTTGTTGTTTTTCAT 57.261 30.769 0.00 0.00 30.33 2.57
2379 2456 8.561738 AACTCTTCTAGTCTTGTTGTTTTTCA 57.438 30.769 0.00 0.00 37.50 2.69
2380 2457 9.841880 AAAACTCTTCTAGTCTTGTTGTTTTTC 57.158 29.630 0.00 0.00 37.50 2.29
2384 2461 9.444600 TGTAAAAACTCTTCTAGTCTTGTTGTT 57.555 29.630 0.00 0.00 37.50 2.83
2385 2462 9.444600 TTGTAAAAACTCTTCTAGTCTTGTTGT 57.555 29.630 0.00 0.00 37.50 3.32
2407 2484 8.609176 CGGCTCATTTATTAGCTAAGTTTTGTA 58.391 33.333 12.54 0.00 38.80 2.41
2408 2485 7.472543 CGGCTCATTTATTAGCTAAGTTTTGT 58.527 34.615 12.54 0.00 38.80 2.83
2409 2486 6.414987 GCGGCTCATTTATTAGCTAAGTTTTG 59.585 38.462 12.54 7.48 38.80 2.44
2410 2487 6.318900 AGCGGCTCATTTATTAGCTAAGTTTT 59.681 34.615 12.54 0.00 38.80 2.43
2411 2488 5.823045 AGCGGCTCATTTATTAGCTAAGTTT 59.177 36.000 12.54 0.00 38.80 2.66
2412 2489 5.368989 AGCGGCTCATTTATTAGCTAAGTT 58.631 37.500 12.54 0.00 38.80 2.66
2413 2490 4.962155 AGCGGCTCATTTATTAGCTAAGT 58.038 39.130 12.54 3.33 38.80 2.24
2414 2491 5.926542 TGTAGCGGCTCATTTATTAGCTAAG 59.073 40.000 5.39 0.00 37.45 2.18
2415 2492 5.849510 TGTAGCGGCTCATTTATTAGCTAA 58.150 37.500 5.39 8.99 37.45 3.09
2416 2493 5.462530 TGTAGCGGCTCATTTATTAGCTA 57.537 39.130 5.39 0.00 38.80 3.32
2417 2494 4.336889 TGTAGCGGCTCATTTATTAGCT 57.663 40.909 5.39 0.00 38.80 3.32
2418 2495 5.613358 AATGTAGCGGCTCATTTATTAGC 57.387 39.130 5.39 0.00 38.03 3.09
2419 2496 8.311650 ACTTAATGTAGCGGCTCATTTATTAG 57.688 34.615 23.07 18.32 36.06 1.73
2420 2497 8.556194 CAACTTAATGTAGCGGCTCATTTATTA 58.444 33.333 23.07 13.04 36.06 0.98
2421 2498 7.417612 CAACTTAATGTAGCGGCTCATTTATT 58.582 34.615 23.07 15.68 36.06 1.40
2422 2499 6.513393 GCAACTTAATGTAGCGGCTCATTTAT 60.513 38.462 23.07 12.41 36.06 1.40
2423 2500 5.220777 GCAACTTAATGTAGCGGCTCATTTA 60.221 40.000 23.07 16.86 36.06 1.40
2424 2501 4.438744 GCAACTTAATGTAGCGGCTCATTT 60.439 41.667 23.07 12.31 36.06 2.32
2425 2502 3.065371 GCAACTTAATGTAGCGGCTCATT 59.935 43.478 22.17 22.17 37.85 2.57
2426 2503 2.614057 GCAACTTAATGTAGCGGCTCAT 59.386 45.455 5.39 7.43 0.00 2.90
2427 2504 2.006888 GCAACTTAATGTAGCGGCTCA 58.993 47.619 5.39 5.11 0.00 4.26
2428 2505 1.330829 GGCAACTTAATGTAGCGGCTC 59.669 52.381 5.39 0.00 0.00 4.70
2429 2506 1.379527 GGCAACTTAATGTAGCGGCT 58.620 50.000 7.98 7.98 0.00 5.52
2430 2507 0.027586 CGGCAACTTAATGTAGCGGC 59.972 55.000 0.00 0.00 0.00 6.53
2431 2508 1.326548 GTCGGCAACTTAATGTAGCGG 59.673 52.381 0.00 0.00 0.00 5.52
2432 2509 1.006391 CGTCGGCAACTTAATGTAGCG 60.006 52.381 0.00 0.00 0.00 4.26
2433 2510 2.264813 TCGTCGGCAACTTAATGTAGC 58.735 47.619 0.00 0.00 0.00 3.58
2434 2511 3.676172 TGTTCGTCGGCAACTTAATGTAG 59.324 43.478 0.00 0.00 0.00 2.74
2435 2512 3.651206 TGTTCGTCGGCAACTTAATGTA 58.349 40.909 0.00 0.00 0.00 2.29
2436 2513 2.485903 TGTTCGTCGGCAACTTAATGT 58.514 42.857 0.00 0.00 0.00 2.71
2437 2514 3.416277 CATGTTCGTCGGCAACTTAATG 58.584 45.455 0.00 0.00 0.00 1.90
2438 2515 2.159572 GCATGTTCGTCGGCAACTTAAT 60.160 45.455 0.00 0.00 0.00 1.40
2439 2516 1.195900 GCATGTTCGTCGGCAACTTAA 59.804 47.619 0.00 0.00 0.00 1.85
2440 2517 0.793861 GCATGTTCGTCGGCAACTTA 59.206 50.000 0.00 0.00 0.00 2.24
2441 2518 0.884704 AGCATGTTCGTCGGCAACTT 60.885 50.000 0.00 0.00 0.00 2.66
2442 2519 0.884704 AAGCATGTTCGTCGGCAACT 60.885 50.000 0.00 0.00 0.00 3.16
2443 2520 0.725784 CAAGCATGTTCGTCGGCAAC 60.726 55.000 0.00 0.00 0.00 4.17
2444 2521 0.882484 TCAAGCATGTTCGTCGGCAA 60.882 50.000 0.00 0.00 0.00 4.52
2445 2522 0.882484 TTCAAGCATGTTCGTCGGCA 60.882 50.000 0.00 0.00 0.00 5.69
2446 2523 0.452784 GTTCAAGCATGTTCGTCGGC 60.453 55.000 0.00 0.00 0.00 5.54
2447 2524 0.865111 TGTTCAAGCATGTTCGTCGG 59.135 50.000 0.00 0.00 0.00 4.79
2448 2525 1.526887 AGTGTTCAAGCATGTTCGTCG 59.473 47.619 0.00 0.00 0.00 5.12
2449 2526 2.908634 CAGTGTTCAAGCATGTTCGTC 58.091 47.619 0.00 0.00 0.00 4.20
2450 2527 1.002468 GCAGTGTTCAAGCATGTTCGT 60.002 47.619 0.00 0.00 0.00 3.85
2451 2528 1.664016 GGCAGTGTTCAAGCATGTTCG 60.664 52.381 0.00 0.00 0.00 3.95
2452 2529 1.664016 CGGCAGTGTTCAAGCATGTTC 60.664 52.381 0.00 0.00 0.00 3.18
2453 2530 0.311790 CGGCAGTGTTCAAGCATGTT 59.688 50.000 0.00 0.00 0.00 2.71
2454 2531 0.534877 TCGGCAGTGTTCAAGCATGT 60.535 50.000 0.00 0.00 0.00 3.21
2455 2532 0.592637 TTCGGCAGTGTTCAAGCATG 59.407 50.000 0.00 0.00 0.00 4.06
2456 2533 1.317613 TTTCGGCAGTGTTCAAGCAT 58.682 45.000 0.00 0.00 0.00 3.79
2457 2534 1.317613 ATTTCGGCAGTGTTCAAGCA 58.682 45.000 0.00 0.00 0.00 3.91
2458 2535 3.552604 TTATTTCGGCAGTGTTCAAGC 57.447 42.857 0.00 0.00 0.00 4.01
2459 2536 3.914364 GCTTTATTTCGGCAGTGTTCAAG 59.086 43.478 0.00 0.00 0.00 3.02
2460 2537 3.305064 GGCTTTATTTCGGCAGTGTTCAA 60.305 43.478 0.00 0.00 0.00 2.69
2461 2538 2.227865 GGCTTTATTTCGGCAGTGTTCA 59.772 45.455 0.00 0.00 0.00 3.18
2462 2539 2.227865 TGGCTTTATTTCGGCAGTGTTC 59.772 45.455 0.00 0.00 0.00 3.18
2463 2540 2.030274 GTGGCTTTATTTCGGCAGTGTT 60.030 45.455 0.00 0.00 36.31 3.32
2464 2541 1.539827 GTGGCTTTATTTCGGCAGTGT 59.460 47.619 0.00 0.00 36.31 3.55
2465 2542 1.465689 CGTGGCTTTATTTCGGCAGTG 60.466 52.381 0.00 0.00 36.31 3.66
2466 2543 0.802494 CGTGGCTTTATTTCGGCAGT 59.198 50.000 0.00 0.00 36.31 4.40
2467 2544 1.062587 CTCGTGGCTTTATTTCGGCAG 59.937 52.381 0.00 0.00 36.31 4.85
2468 2545 1.083489 CTCGTGGCTTTATTTCGGCA 58.917 50.000 0.00 0.00 0.00 5.69
2469 2546 1.365699 TCTCGTGGCTTTATTTCGGC 58.634 50.000 0.00 0.00 0.00 5.54
2470 2547 2.223044 GCTTCTCGTGGCTTTATTTCGG 60.223 50.000 0.00 0.00 0.00 4.30
2471 2548 2.415168 TGCTTCTCGTGGCTTTATTTCG 59.585 45.455 0.00 0.00 0.00 3.46
2472 2549 4.083271 ACTTGCTTCTCGTGGCTTTATTTC 60.083 41.667 0.00 0.00 0.00 2.17
2473 2550 3.821033 ACTTGCTTCTCGTGGCTTTATTT 59.179 39.130 0.00 0.00 0.00 1.40
2474 2551 3.412386 ACTTGCTTCTCGTGGCTTTATT 58.588 40.909 0.00 0.00 0.00 1.40
2475 2552 3.059352 ACTTGCTTCTCGTGGCTTTAT 57.941 42.857 0.00 0.00 0.00 1.40
2476 2553 2.543777 ACTTGCTTCTCGTGGCTTTA 57.456 45.000 0.00 0.00 0.00 1.85
2477 2554 1.680338 AACTTGCTTCTCGTGGCTTT 58.320 45.000 0.00 0.00 0.00 3.51
2478 2555 1.334869 CAAACTTGCTTCTCGTGGCTT 59.665 47.619 0.00 0.00 0.00 4.35
2479 2556 0.947244 CAAACTTGCTTCTCGTGGCT 59.053 50.000 0.00 0.00 0.00 4.75
2480 2557 0.944386 TCAAACTTGCTTCTCGTGGC 59.056 50.000 0.00 0.00 0.00 5.01
2481 2558 3.904136 AATCAAACTTGCTTCTCGTGG 57.096 42.857 0.00 0.00 0.00 4.94
2482 2559 5.100751 AGAAATCAAACTTGCTTCTCGTG 57.899 39.130 0.00 0.00 29.65 4.35
2483 2560 5.757850 AAGAAATCAAACTTGCTTCTCGT 57.242 34.783 6.93 0.00 32.48 4.18
2484 2561 7.643764 TGTTAAAGAAATCAAACTTGCTTCTCG 59.356 33.333 6.93 0.00 32.48 4.04
2485 2562 8.856490 TGTTAAAGAAATCAAACTTGCTTCTC 57.144 30.769 6.93 0.00 32.48 2.87
2486 2563 9.087424 GTTGTTAAAGAAATCAAACTTGCTTCT 57.913 29.630 0.00 2.51 33.98 2.85
2487 2564 9.087424 AGTTGTTAAAGAAATCAAACTTGCTTC 57.913 29.630 0.00 0.00 0.00 3.86
2488 2565 8.872845 CAGTTGTTAAAGAAATCAAACTTGCTT 58.127 29.630 0.00 0.00 0.00 3.91
2489 2566 8.250332 TCAGTTGTTAAAGAAATCAAACTTGCT 58.750 29.630 0.00 0.00 0.00 3.91
2490 2567 8.406172 TCAGTTGTTAAAGAAATCAAACTTGC 57.594 30.769 0.00 0.00 0.00 4.01
2492 2569 9.366216 GGTTCAGTTGTTAAAGAAATCAAACTT 57.634 29.630 0.00 0.00 0.00 2.66
2493 2570 8.527810 TGGTTCAGTTGTTAAAGAAATCAAACT 58.472 29.630 0.00 0.00 0.00 2.66
2494 2571 8.696410 TGGTTCAGTTGTTAAAGAAATCAAAC 57.304 30.769 0.00 0.00 0.00 2.93
2495 2572 9.883142 ATTGGTTCAGTTGTTAAAGAAATCAAA 57.117 25.926 0.00 0.00 0.00 2.69
2496 2573 9.311916 CATTGGTTCAGTTGTTAAAGAAATCAA 57.688 29.630 0.00 0.00 0.00 2.57
2497 2574 7.437862 GCATTGGTTCAGTTGTTAAAGAAATCA 59.562 33.333 0.00 0.00 0.00 2.57
2498 2575 7.095649 GGCATTGGTTCAGTTGTTAAAGAAATC 60.096 37.037 0.00 0.00 0.00 2.17
2499 2576 6.705825 GGCATTGGTTCAGTTGTTAAAGAAAT 59.294 34.615 0.00 0.00 0.00 2.17
2500 2577 6.045955 GGCATTGGTTCAGTTGTTAAAGAAA 58.954 36.000 0.00 0.00 0.00 2.52
2501 2578 5.362430 AGGCATTGGTTCAGTTGTTAAAGAA 59.638 36.000 0.00 0.00 0.00 2.52
2502 2579 4.892934 AGGCATTGGTTCAGTTGTTAAAGA 59.107 37.500 0.00 0.00 0.00 2.52
2503 2580 4.984161 CAGGCATTGGTTCAGTTGTTAAAG 59.016 41.667 0.00 0.00 0.00 1.85
2504 2581 4.646945 TCAGGCATTGGTTCAGTTGTTAAA 59.353 37.500 0.00 0.00 0.00 1.52
2505 2582 4.211125 TCAGGCATTGGTTCAGTTGTTAA 58.789 39.130 0.00 0.00 0.00 2.01
2506 2583 3.820467 CTCAGGCATTGGTTCAGTTGTTA 59.180 43.478 0.00 0.00 0.00 2.41
2507 2584 2.624838 CTCAGGCATTGGTTCAGTTGTT 59.375 45.455 0.00 0.00 0.00 2.83
2508 2585 2.233271 CTCAGGCATTGGTTCAGTTGT 58.767 47.619 0.00 0.00 0.00 3.32
2509 2586 1.068055 GCTCAGGCATTGGTTCAGTTG 60.068 52.381 0.00 0.00 38.54 3.16
2510 2587 1.251251 GCTCAGGCATTGGTTCAGTT 58.749 50.000 0.00 0.00 38.54 3.16
2511 2588 0.957395 CGCTCAGGCATTGGTTCAGT 60.957 55.000 0.00 0.00 38.60 3.41
2512 2589 0.674581 TCGCTCAGGCATTGGTTCAG 60.675 55.000 0.00 0.00 38.60 3.02
2513 2590 0.035152 ATCGCTCAGGCATTGGTTCA 60.035 50.000 0.00 0.00 38.60 3.18
2514 2591 0.659957 GATCGCTCAGGCATTGGTTC 59.340 55.000 0.00 0.00 38.60 3.62
2515 2592 0.035152 TGATCGCTCAGGCATTGGTT 60.035 50.000 0.00 0.00 38.60 3.67
2516 2593 0.182061 ATGATCGCTCAGGCATTGGT 59.818 50.000 0.00 0.00 38.60 3.67
2517 2594 0.591659 CATGATCGCTCAGGCATTGG 59.408 55.000 0.00 0.00 38.60 3.16
2518 2595 1.263484 GACATGATCGCTCAGGCATTG 59.737 52.381 0.00 0.00 36.65 2.82
2519 2596 1.590932 GACATGATCGCTCAGGCATT 58.409 50.000 0.00 0.00 36.65 3.56
2520 2597 0.250209 GGACATGATCGCTCAGGCAT 60.250 55.000 0.00 0.00 36.65 4.40
2521 2598 1.144716 GGACATGATCGCTCAGGCA 59.855 57.895 0.00 0.00 36.65 4.75
2522 2599 0.879400 CTGGACATGATCGCTCAGGC 60.879 60.000 0.00 0.00 36.65 4.85
2523 2600 0.749049 TCTGGACATGATCGCTCAGG 59.251 55.000 0.00 0.00 39.09 3.86
2524 2601 1.408340 ACTCTGGACATGATCGCTCAG 59.592 52.381 0.00 0.00 34.12 3.35
2525 2602 1.478631 ACTCTGGACATGATCGCTCA 58.521 50.000 0.00 0.00 35.41 4.26
2526 2603 3.505680 AGATACTCTGGACATGATCGCTC 59.494 47.826 0.00 0.00 0.00 5.03
2527 2604 3.495331 AGATACTCTGGACATGATCGCT 58.505 45.455 0.00 0.00 0.00 4.93
2528 2605 3.932545 AGATACTCTGGACATGATCGC 57.067 47.619 0.00 0.00 0.00 4.58
2529 2606 4.614764 CGGAAGATACTCTGGACATGATCG 60.615 50.000 0.00 0.00 0.00 3.69
2530 2607 4.804108 CGGAAGATACTCTGGACATGATC 58.196 47.826 0.00 0.00 0.00 2.92
2531 2608 3.006323 GCGGAAGATACTCTGGACATGAT 59.994 47.826 0.00 0.00 0.00 2.45
2532 2609 2.362397 GCGGAAGATACTCTGGACATGA 59.638 50.000 0.00 0.00 0.00 3.07
2533 2610 2.101415 TGCGGAAGATACTCTGGACATG 59.899 50.000 0.00 0.00 0.00 3.21
2534 2611 2.101582 GTGCGGAAGATACTCTGGACAT 59.898 50.000 0.00 0.00 41.37 3.06
2535 2612 1.476891 GTGCGGAAGATACTCTGGACA 59.523 52.381 0.00 0.00 41.37 4.02
2536 2613 1.751924 AGTGCGGAAGATACTCTGGAC 59.248 52.381 0.00 0.00 41.88 4.02
2537 2614 2.145397 AGTGCGGAAGATACTCTGGA 57.855 50.000 0.00 0.00 0.00 3.86
2538 2615 2.287909 GCTAGTGCGGAAGATACTCTGG 60.288 54.545 0.00 0.00 33.23 3.86
2539 2616 2.359214 TGCTAGTGCGGAAGATACTCTG 59.641 50.000 0.00 0.00 43.34 3.35
2540 2617 2.656002 TGCTAGTGCGGAAGATACTCT 58.344 47.619 0.00 0.00 43.34 3.24
2541 2618 3.438297 TTGCTAGTGCGGAAGATACTC 57.562 47.619 0.00 0.00 43.34 2.59
2542 2619 4.122776 CAATTGCTAGTGCGGAAGATACT 58.877 43.478 0.00 0.00 43.34 2.12
2543 2620 3.248602 CCAATTGCTAGTGCGGAAGATAC 59.751 47.826 0.00 0.00 43.34 2.24
2544 2621 3.466836 CCAATTGCTAGTGCGGAAGATA 58.533 45.455 0.00 0.00 43.34 1.98
2545 2622 2.292267 CCAATTGCTAGTGCGGAAGAT 58.708 47.619 0.00 0.00 43.34 2.40
2546 2623 1.737838 CCAATTGCTAGTGCGGAAGA 58.262 50.000 0.00 0.00 43.34 2.87
2547 2624 0.099436 GCCAATTGCTAGTGCGGAAG 59.901 55.000 0.00 0.00 43.34 3.46
2548 2625 1.643868 CGCCAATTGCTAGTGCGGAA 61.644 55.000 15.49 0.00 43.34 4.30
2549 2626 2.106074 CGCCAATTGCTAGTGCGGA 61.106 57.895 15.49 0.00 43.34 5.54
2550 2627 2.404789 CGCCAATTGCTAGTGCGG 59.595 61.111 15.49 0.00 43.34 5.69
2551 2628 1.087202 TACCGCCAATTGCTAGTGCG 61.087 55.000 16.11 16.11 44.47 5.34
2552 2629 1.064060 CTTACCGCCAATTGCTAGTGC 59.936 52.381 0.00 0.00 38.05 4.40
2553 2630 2.609459 CTCTTACCGCCAATTGCTAGTG 59.391 50.000 0.00 0.00 38.05 2.74
2554 2631 2.420129 CCTCTTACCGCCAATTGCTAGT 60.420 50.000 0.00 0.00 38.05 2.57
2555 2632 2.213499 CCTCTTACCGCCAATTGCTAG 58.787 52.381 0.00 0.00 38.05 3.42
2556 2633 1.745827 GCCTCTTACCGCCAATTGCTA 60.746 52.381 0.00 0.00 38.05 3.49
2557 2634 1.032114 GCCTCTTACCGCCAATTGCT 61.032 55.000 0.00 0.00 38.05 3.91
2558 2635 1.312371 TGCCTCTTACCGCCAATTGC 61.312 55.000 0.00 0.00 0.00 3.56
2559 2636 1.173043 TTGCCTCTTACCGCCAATTG 58.827 50.000 0.00 0.00 0.00 2.32
2560 2637 1.818674 CTTTGCCTCTTACCGCCAATT 59.181 47.619 0.00 0.00 0.00 2.32
2561 2638 1.004277 TCTTTGCCTCTTACCGCCAAT 59.996 47.619 0.00 0.00 0.00 3.16
2562 2639 0.398696 TCTTTGCCTCTTACCGCCAA 59.601 50.000 0.00 0.00 0.00 4.52
2563 2640 0.618458 ATCTTTGCCTCTTACCGCCA 59.382 50.000 0.00 0.00 0.00 5.69
2564 2641 2.612672 GTTATCTTTGCCTCTTACCGCC 59.387 50.000 0.00 0.00 0.00 6.13
2565 2642 2.612672 GGTTATCTTTGCCTCTTACCGC 59.387 50.000 0.00 0.00 0.00 5.68
2566 2643 4.138487 AGGTTATCTTTGCCTCTTACCG 57.862 45.455 0.00 0.00 0.00 4.02
2567 2644 4.640647 CCAAGGTTATCTTTGCCTCTTACC 59.359 45.833 0.00 0.00 32.41 2.85
2568 2645 5.123979 CACCAAGGTTATCTTTGCCTCTTAC 59.876 44.000 0.00 0.00 32.41 2.34
2569 2646 5.013704 TCACCAAGGTTATCTTTGCCTCTTA 59.986 40.000 0.00 0.00 32.41 2.10
2570 2647 4.082125 CACCAAGGTTATCTTTGCCTCTT 58.918 43.478 0.00 0.00 32.41 2.85
2571 2648 3.330701 TCACCAAGGTTATCTTTGCCTCT 59.669 43.478 0.00 0.00 32.41 3.69
2572 2649 3.686016 TCACCAAGGTTATCTTTGCCTC 58.314 45.455 0.00 0.00 32.41 4.70
2573 2650 3.806949 TCACCAAGGTTATCTTTGCCT 57.193 42.857 0.00 0.00 32.41 4.75
2574 2651 4.556233 GTTTCACCAAGGTTATCTTTGCC 58.444 43.478 0.00 0.00 32.41 4.52
2575 2652 4.280929 AGGTTTCACCAAGGTTATCTTTGC 59.719 41.667 0.00 0.00 41.95 3.68
2576 2653 6.040391 TGAAGGTTTCACCAAGGTTATCTTTG 59.960 38.462 0.00 0.00 41.95 2.77
2577 2654 6.133356 TGAAGGTTTCACCAAGGTTATCTTT 58.867 36.000 0.00 0.00 41.95 2.52
2578 2655 5.701224 TGAAGGTTTCACCAAGGTTATCTT 58.299 37.500 0.00 0.00 41.95 2.40
2579 2656 5.319043 TGAAGGTTTCACCAAGGTTATCT 57.681 39.130 0.00 0.00 41.95 1.98
2580 2657 5.946377 AGATGAAGGTTTCACCAAGGTTATC 59.054 40.000 0.00 0.00 43.48 1.75
2581 2658 5.892348 AGATGAAGGTTTCACCAAGGTTAT 58.108 37.500 0.00 0.00 43.48 1.89
2582 2659 5.073144 AGAGATGAAGGTTTCACCAAGGTTA 59.927 40.000 0.00 0.00 43.48 2.85
2583 2660 4.141158 AGAGATGAAGGTTTCACCAAGGTT 60.141 41.667 0.00 0.00 43.48 3.50
2584 2661 3.395941 AGAGATGAAGGTTTCACCAAGGT 59.604 43.478 0.00 0.00 43.48 3.50
2585 2662 3.755378 CAGAGATGAAGGTTTCACCAAGG 59.245 47.826 0.00 0.00 43.48 3.61
2586 2663 3.755378 CCAGAGATGAAGGTTTCACCAAG 59.245 47.826 0.00 0.00 43.48 3.61
2587 2664 3.754965 CCAGAGATGAAGGTTTCACCAA 58.245 45.455 0.00 0.00 43.48 3.67
2588 2665 2.553028 GCCAGAGATGAAGGTTTCACCA 60.553 50.000 0.00 0.00 43.48 4.17
2589 2666 2.087646 GCCAGAGATGAAGGTTTCACC 58.912 52.381 0.00 0.00 43.48 4.02
2590 2667 2.087646 GGCCAGAGATGAAGGTTTCAC 58.912 52.381 0.00 0.00 43.48 3.18
2591 2668 1.704628 TGGCCAGAGATGAAGGTTTCA 59.295 47.619 0.00 0.00 45.01 2.69
2592 2669 2.363683 CTGGCCAGAGATGAAGGTTTC 58.636 52.381 29.88 0.00 0.00 2.78
2593 2670 1.005215 CCTGGCCAGAGATGAAGGTTT 59.995 52.381 34.91 0.00 0.00 3.27
2594 2671 0.622665 CCTGGCCAGAGATGAAGGTT 59.377 55.000 34.91 0.00 0.00 3.50
2595 2672 0.548682 ACCTGGCCAGAGATGAAGGT 60.549 55.000 34.91 18.77 33.19 3.50
2596 2673 1.139853 GTACCTGGCCAGAGATGAAGG 59.860 57.143 34.91 18.04 0.00 3.46
2597 2674 1.833630 TGTACCTGGCCAGAGATGAAG 59.166 52.381 34.91 17.47 0.00 3.02
2598 2675 1.555075 GTGTACCTGGCCAGAGATGAA 59.445 52.381 34.91 11.33 0.00 2.57
2599 2676 1.195115 GTGTACCTGGCCAGAGATGA 58.805 55.000 34.91 10.74 0.00 2.92
2600 2677 1.134580 CAGTGTACCTGGCCAGAGATG 60.135 57.143 34.91 19.40 37.54 2.90
2601 2678 1.198713 CAGTGTACCTGGCCAGAGAT 58.801 55.000 34.91 20.47 37.54 2.75
2602 2679 1.544825 GCAGTGTACCTGGCCAGAGA 61.545 60.000 34.91 18.27 41.81 3.10
2603 2680 1.078848 GCAGTGTACCTGGCCAGAG 60.079 63.158 34.91 24.76 41.81 3.35
2604 2681 3.068881 GCAGTGTACCTGGCCAGA 58.931 61.111 34.91 12.85 41.81 3.86
2609 2686 1.201429 AAGGAGGGCAGTGTACCTGG 61.201 60.000 12.45 0.00 41.81 4.45
2610 2687 1.482593 CTAAGGAGGGCAGTGTACCTG 59.517 57.143 12.45 6.91 44.53 4.00
2611 2688 1.361543 TCTAAGGAGGGCAGTGTACCT 59.638 52.381 8.07 8.07 40.54 3.08
2612 2689 1.757699 CTCTAAGGAGGGCAGTGTACC 59.242 57.143 0.00 0.00 36.03 3.34
2626 2703 1.134551 GGCAGAGACCCTTGCTCTAAG 60.135 57.143 0.00 0.00 40.60 2.18
2627 2704 0.905357 GGCAGAGACCCTTGCTCTAA 59.095 55.000 0.00 0.00 40.60 2.10
2628 2705 0.252239 TGGCAGAGACCCTTGCTCTA 60.252 55.000 0.00 0.00 40.60 2.43
2629 2706 1.130054 TTGGCAGAGACCCTTGCTCT 61.130 55.000 0.00 0.00 43.21 4.09
2630 2707 0.034670 ATTGGCAGAGACCCTTGCTC 60.035 55.000 0.00 0.00 0.00 4.26
2631 2708 0.407139 AATTGGCAGAGACCCTTGCT 59.593 50.000 0.00 0.00 0.00 3.91
2632 2709 1.260544 AAATTGGCAGAGACCCTTGC 58.739 50.000 0.00 0.00 0.00 4.01
2633 2710 2.028748 CCAAAATTGGCAGAGACCCTTG 60.029 50.000 0.00 0.00 42.21 3.61
2634 2711 2.250924 CCAAAATTGGCAGAGACCCTT 58.749 47.619 0.00 0.00 42.21 3.95
2635 2712 1.928868 CCAAAATTGGCAGAGACCCT 58.071 50.000 0.00 0.00 42.21 4.34
2646 2723 1.270785 GGTGCCCTGGAACCAAAATTG 60.271 52.381 8.60 0.00 43.41 2.32
2647 2724 1.055849 GGTGCCCTGGAACCAAAATT 58.944 50.000 8.60 0.00 43.41 1.82
2648 2725 0.190815 AGGTGCCCTGGAACCAAAAT 59.809 50.000 15.95 0.00 46.39 1.82
2649 2726 0.031616 AAGGTGCCCTGGAACCAAAA 60.032 50.000 15.95 0.00 46.39 2.44
2650 2727 0.758685 CAAGGTGCCCTGGAACCAAA 60.759 55.000 15.95 0.00 46.39 3.28
2651 2728 1.152567 CAAGGTGCCCTGGAACCAA 60.153 57.895 15.95 0.00 46.39 3.67
2652 2729 1.650242 TTCAAGGTGCCCTGGAACCA 61.650 55.000 15.95 0.00 46.39 3.67
2653 2730 1.152830 TTCAAGGTGCCCTGGAACC 59.847 57.895 5.04 5.04 38.54 3.62
2654 2731 4.920828 TTCAAGGTGCCCTGGAAC 57.079 55.556 6.90 0.00 38.54 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.