Multiple sequence alignment - TraesCS7D01G438500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G438500 chr7D 100.000 3545 0 0 1 3545 557783891 557780347 0.000000e+00 6547
1 TraesCS7D01G438500 chr7D 87.861 1211 98 25 1807 2990 557345928 557347116 0.000000e+00 1376
2 TraesCS7D01G438500 chr7D 87.599 1008 86 14 757 1730 557344839 557345841 0.000000e+00 1133
3 TraesCS7D01G438500 chr7D 77.881 1944 278 75 1462 3312 557400502 557402386 0.000000e+00 1068
4 TraesCS7D01G438500 chr7D 87.017 932 102 9 446 1372 557397396 557398313 0.000000e+00 1033
5 TraesCS7D01G438500 chr7D 86.987 853 79 14 1375 2223 557398370 557399194 0.000000e+00 931
6 TraesCS7D01G438500 chr7D 79.067 879 152 17 1948 2814 557398979 557399837 3.070000e-160 575
7 TraesCS7D01G438500 chr7D 84.753 223 24 9 2035 2252 557346111 557346328 7.710000e-52 215
8 TraesCS7D01G438500 chr7D 90.789 152 14 0 3392 3543 557347116 557347267 1.670000e-48 204
9 TraesCS7D01G438500 chrUn 86.874 1478 127 31 289 1730 86729932 86731378 0.000000e+00 1592
10 TraesCS7D01G438500 chrUn 86.862 784 68 13 1777 2547 86731458 86732219 0.000000e+00 845
11 TraesCS7D01G438500 chrUn 86.089 762 63 18 2576 3314 86732215 86732956 0.000000e+00 780
12 TraesCS7D01G438500 chrUn 84.375 224 23 11 2035 2252 86731674 86731891 3.590000e-50 209
13 TraesCS7D01G438500 chr7A 88.213 1298 112 15 459 1730 642899142 642900424 0.000000e+00 1511
14 TraesCS7D01G438500 chr7A 83.277 1483 185 31 1375 2814 642939817 642941279 0.000000e+00 1306
15 TraesCS7D01G438500 chr7A 86.910 932 109 7 446 1372 642938837 642939760 0.000000e+00 1033
16 TraesCS7D01G438500 chr7A 86.544 654 65 15 2026 2663 642900711 642901357 0.000000e+00 699
17 TraesCS7D01G438500 chr7A 76.112 1461 221 61 1939 3312 642941519 642942938 0.000000e+00 647
18 TraesCS7D01G438500 chr7A 82.888 374 44 7 1777 2146 642900504 642900861 5.710000e-83 318
19 TraesCS7D01G438500 chr7A 93.048 187 13 0 2066 2252 642900721 642900907 1.250000e-69 274
20 TraesCS7D01G438500 chr7A 76.446 242 23 9 3076 3314 642901788 642901998 2.250000e-17 100
21 TraesCS7D01G438500 chr7A 92.453 53 2 1 931 981 642864482 642864534 1.360000e-09 75
22 TraesCS7D01G438500 chr7B 86.424 906 112 5 475 1372 605420232 605421134 0.000000e+00 981
23 TraesCS7D01G438500 chr7B 87.004 908 70 20 1769 2663 605102468 605103340 0.000000e+00 979
24 TraesCS7D01G438500 chr7B 86.523 883 95 11 1375 2252 605421191 605422054 0.000000e+00 950
25 TraesCS7D01G438500 chr7B 87.338 695 61 11 1062 1730 605101705 605102398 0.000000e+00 771
26 TraesCS7D01G438500 chr7B 80.664 1024 155 25 1459 2469 605424374 605425367 0.000000e+00 754
27 TraesCS7D01G438500 chr7B 90.737 529 47 1 540 1066 605098441 605098969 0.000000e+00 704
28 TraesCS7D01G438500 chr7B 75.607 865 126 40 2504 3312 605425369 605426204 2.030000e-92 350
29 TraesCS7D01G438500 chr7B 93.596 203 12 1 3341 3543 605071507 605071708 5.750000e-78 302
30 TraesCS7D01G438500 chr7B 87.160 257 29 3 478 731 605089345 605089600 4.480000e-74 289
31 TraesCS7D01G438500 chr7B 88.430 242 21 5 3076 3314 605108735 605108972 5.790000e-73 285
32 TraesCS7D01G438500 chr7B 92.000 150 10 1 3178 3325 605071184 605071333 3.590000e-50 209
33 TraesCS7D01G438500 chr7B 85.567 97 12 2 3076 3172 605424020 605424114 2.250000e-17 100
34 TraesCS7D01G438500 chr5B 77.124 765 151 18 612 1364 400446055 400446807 4.230000e-114 422
35 TraesCS7D01G438500 chr5A 76.441 798 142 38 585 1364 442276749 442277518 1.190000e-104 390


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G438500 chr7D 557780347 557783891 3544 True 6547.000000 6547 100.000000 1 3545 1 chr7D.!!$R1 3544
1 TraesCS7D01G438500 chr7D 557397396 557402386 4990 False 901.750000 1068 82.738000 446 3312 4 chr7D.!!$F2 2866
2 TraesCS7D01G438500 chr7D 557344839 557347267 2428 False 732.000000 1376 87.750500 757 3543 4 chr7D.!!$F1 2786
3 TraesCS7D01G438500 chrUn 86729932 86732956 3024 False 856.500000 1592 86.050000 289 3314 4 chrUn.!!$F1 3025
4 TraesCS7D01G438500 chr7A 642938837 642942938 4101 False 995.333333 1306 82.099667 446 3312 3 chr7A.!!$F3 2866
5 TraesCS7D01G438500 chr7A 642899142 642901998 2856 False 580.400000 1511 85.427800 459 3314 5 chr7A.!!$F2 2855
6 TraesCS7D01G438500 chr7B 605098441 605103340 4899 False 818.000000 979 88.359667 540 2663 3 chr7B.!!$F4 2123
7 TraesCS7D01G438500 chr7B 605420232 605426204 5972 False 627.000000 981 82.957000 475 3312 5 chr7B.!!$F5 2837
8 TraesCS7D01G438500 chr7B 605071184 605071708 524 False 255.500000 302 92.798000 3178 3543 2 chr7B.!!$F3 365
9 TraesCS7D01G438500 chr5B 400446055 400446807 752 False 422.000000 422 77.124000 612 1364 1 chr5B.!!$F1 752
10 TraesCS7D01G438500 chr5A 442276749 442277518 769 False 390.000000 390 76.441000 585 1364 1 chr5A.!!$F1 779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 448 0.035343 GTTAACTGGAGGCCCTGTCC 60.035 60.0 0.00 0.0 42.83 4.02 F
1182 3952 0.100682 TCTACTTCATCAGCGTCGCC 59.899 55.0 14.86 0.0 0.00 5.54 F
1492 4319 0.179009 CATGCCATCCGGGTTGATCT 60.179 55.0 0.00 0.0 39.65 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1558 4393 0.037232 ACTAACCTGGCACGAGCTTC 60.037 55.0 4.48 0.00 41.70 3.86 R
2088 4987 0.104671 GCTCATCTCCCTCTGACAGC 59.895 60.0 0.00 0.00 0.00 4.40 R
3272 11442 0.668535 CATGGCATGATGCTGTCAGG 59.331 55.0 22.91 4.92 44.28 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.515020 CAACAATAACAACAACAATTAGAGTGT 57.485 29.630 0.00 0.00 0.00 3.55
37 38 9.730420 ACAACAATTAGAGTGTTATGTTTTCAC 57.270 29.630 0.00 0.00 37.09 3.18
38 39 9.729023 CAACAATTAGAGTGTTATGTTTTCACA 57.271 29.630 0.00 0.00 37.09 3.58
39 40 9.730420 AACAATTAGAGTGTTATGTTTTCACAC 57.270 29.630 0.00 0.00 37.44 3.82
40 41 9.120538 ACAATTAGAGTGTTATGTTTTCACACT 57.879 29.630 3.88 3.88 43.36 3.55
43 44 9.998106 ATTAGAGTGTTATGTTTTCACACTACT 57.002 29.630 4.22 6.54 41.12 2.57
44 45 7.948278 AGAGTGTTATGTTTTCACACTACTC 57.052 36.000 4.22 0.00 41.12 2.59
45 46 6.929606 AGAGTGTTATGTTTTCACACTACTCC 59.070 38.462 4.22 0.00 41.12 3.85
46 47 6.827727 AGTGTTATGTTTTCACACTACTCCT 58.172 36.000 2.35 0.00 39.53 3.69
47 48 7.280356 AGTGTTATGTTTTCACACTACTCCTT 58.720 34.615 2.35 0.00 39.53 3.36
48 49 7.226720 AGTGTTATGTTTTCACACTACTCCTTG 59.773 37.037 2.35 0.00 39.53 3.61
49 50 7.012044 GTGTTATGTTTTCACACTACTCCTTGT 59.988 37.037 0.00 0.00 35.03 3.16
50 51 7.554835 TGTTATGTTTTCACACTACTCCTTGTT 59.445 33.333 0.00 0.00 35.03 2.83
51 52 8.403236 GTTATGTTTTCACACTACTCCTTGTTT 58.597 33.333 0.00 0.00 35.03 2.83
52 53 6.189677 TGTTTTCACACTACTCCTTGTTTG 57.810 37.500 0.00 0.00 0.00 2.93
53 54 5.708230 TGTTTTCACACTACTCCTTGTTTGT 59.292 36.000 0.00 0.00 0.00 2.83
54 55 6.207810 TGTTTTCACACTACTCCTTGTTTGTT 59.792 34.615 0.00 0.00 0.00 2.83
55 56 5.811399 TTCACACTACTCCTTGTTTGTTG 57.189 39.130 0.00 0.00 0.00 3.33
56 57 4.839121 TCACACTACTCCTTGTTTGTTGT 58.161 39.130 0.00 0.00 0.00 3.32
57 58 5.979993 TCACACTACTCCTTGTTTGTTGTA 58.020 37.500 0.00 0.00 0.00 2.41
58 59 6.588204 TCACACTACTCCTTGTTTGTTGTAT 58.412 36.000 0.00 0.00 0.00 2.29
59 60 7.051623 TCACACTACTCCTTGTTTGTTGTATT 58.948 34.615 0.00 0.00 0.00 1.89
60 61 7.554835 TCACACTACTCCTTGTTTGTTGTATTT 59.445 33.333 0.00 0.00 0.00 1.40
61 62 8.832521 CACACTACTCCTTGTTTGTTGTATTTA 58.167 33.333 0.00 0.00 0.00 1.40
62 63 8.833493 ACACTACTCCTTGTTTGTTGTATTTAC 58.167 33.333 0.00 0.00 0.00 2.01
63 64 8.287503 CACTACTCCTTGTTTGTTGTATTTACC 58.712 37.037 0.00 0.00 0.00 2.85
64 65 7.994334 ACTACTCCTTGTTTGTTGTATTTACCA 59.006 33.333 0.00 0.00 0.00 3.25
65 66 7.833285 ACTCCTTGTTTGTTGTATTTACCAT 57.167 32.000 0.00 0.00 0.00 3.55
66 67 7.882179 ACTCCTTGTTTGTTGTATTTACCATC 58.118 34.615 0.00 0.00 0.00 3.51
67 68 7.724061 ACTCCTTGTTTGTTGTATTTACCATCT 59.276 33.333 0.00 0.00 0.00 2.90
68 69 8.472007 TCCTTGTTTGTTGTATTTACCATCTT 57.528 30.769 0.00 0.00 0.00 2.40
69 70 8.573035 TCCTTGTTTGTTGTATTTACCATCTTC 58.427 33.333 0.00 0.00 0.00 2.87
70 71 8.356657 CCTTGTTTGTTGTATTTACCATCTTCA 58.643 33.333 0.00 0.00 0.00 3.02
71 72 9.912634 CTTGTTTGTTGTATTTACCATCTTCAT 57.087 29.630 0.00 0.00 0.00 2.57
73 74 9.689976 TGTTTGTTGTATTTACCATCTTCATTG 57.310 29.630 0.00 0.00 0.00 2.82
74 75 9.906660 GTTTGTTGTATTTACCATCTTCATTGA 57.093 29.630 0.00 0.00 0.00 2.57
77 78 9.460019 TGTTGTATTTACCATCTTCATTGATGA 57.540 29.630 4.87 4.87 44.71 2.92
84 85 8.578448 TTACCATCTTCATTGATGATTTGACA 57.422 30.769 11.29 0.00 44.71 3.58
85 86 7.655521 ACCATCTTCATTGATGATTTGACAT 57.344 32.000 11.29 0.00 44.71 3.06
86 87 8.074613 ACCATCTTCATTGATGATTTGACATT 57.925 30.769 11.29 0.00 44.71 2.71
87 88 9.192642 ACCATCTTCATTGATGATTTGACATTA 57.807 29.630 11.29 0.00 44.71 1.90
139 140 7.840342 AAAAACTAAATCATGCACAACAACA 57.160 28.000 0.00 0.00 0.00 3.33
140 141 8.436046 AAAAACTAAATCATGCACAACAACAT 57.564 26.923 0.00 0.00 0.00 2.71
141 142 9.539825 AAAAACTAAATCATGCACAACAACATA 57.460 25.926 0.00 0.00 0.00 2.29
142 143 9.709495 AAAACTAAATCATGCACAACAACATAT 57.291 25.926 0.00 0.00 0.00 1.78
143 144 8.692110 AACTAAATCATGCACAACAACATATG 57.308 30.769 0.00 0.00 0.00 1.78
144 145 7.259882 ACTAAATCATGCACAACAACATATGG 58.740 34.615 7.80 0.00 0.00 2.74
145 146 5.918426 AATCATGCACAACAACATATGGA 57.082 34.783 7.80 0.00 0.00 3.41
146 147 4.968812 TCATGCACAACAACATATGGAG 57.031 40.909 7.80 1.31 0.00 3.86
147 148 4.334552 TCATGCACAACAACATATGGAGT 58.665 39.130 7.80 1.99 0.00 3.85
148 149 4.766373 TCATGCACAACAACATATGGAGTT 59.234 37.500 7.80 8.31 0.00 3.01
149 150 5.243507 TCATGCACAACAACATATGGAGTTT 59.756 36.000 7.80 0.85 0.00 2.66
150 151 6.432472 TCATGCACAACAACATATGGAGTTTA 59.568 34.615 7.80 0.00 0.00 2.01
151 152 6.641169 TGCACAACAACATATGGAGTTTAA 57.359 33.333 7.80 0.00 0.00 1.52
152 153 6.442952 TGCACAACAACATATGGAGTTTAAC 58.557 36.000 7.80 3.81 0.00 2.01
153 154 6.039829 TGCACAACAACATATGGAGTTTAACA 59.960 34.615 7.80 6.01 0.00 2.41
154 155 6.582295 GCACAACAACATATGGAGTTTAACAG 59.418 38.462 7.80 2.32 0.00 3.16
155 156 7.083858 CACAACAACATATGGAGTTTAACAGG 58.916 38.462 7.80 1.69 0.00 4.00
156 157 5.897377 ACAACATATGGAGTTTAACAGGC 57.103 39.130 7.80 0.00 0.00 4.85
157 158 4.394920 ACAACATATGGAGTTTAACAGGCG 59.605 41.667 7.80 0.00 0.00 5.52
158 159 4.216411 ACATATGGAGTTTAACAGGCGT 57.784 40.909 7.80 0.00 0.00 5.68
159 160 3.938963 ACATATGGAGTTTAACAGGCGTG 59.061 43.478 7.80 4.53 0.00 5.34
160 161 1.821216 ATGGAGTTTAACAGGCGTGG 58.179 50.000 11.67 0.00 0.00 4.94
161 162 0.759959 TGGAGTTTAACAGGCGTGGA 59.240 50.000 11.67 0.00 0.00 4.02
162 163 1.141254 TGGAGTTTAACAGGCGTGGAA 59.859 47.619 11.67 1.65 0.00 3.53
163 164 2.224670 TGGAGTTTAACAGGCGTGGAAT 60.225 45.455 11.67 0.00 0.00 3.01
164 165 2.418976 GGAGTTTAACAGGCGTGGAATC 59.581 50.000 11.67 4.20 0.00 2.52
165 166 3.335579 GAGTTTAACAGGCGTGGAATCT 58.664 45.455 11.67 8.61 0.00 2.40
166 167 3.751518 AGTTTAACAGGCGTGGAATCTT 58.248 40.909 11.67 0.00 0.00 2.40
167 168 4.901868 AGTTTAACAGGCGTGGAATCTTA 58.098 39.130 11.67 0.00 0.00 2.10
168 169 4.935808 AGTTTAACAGGCGTGGAATCTTAG 59.064 41.667 11.67 0.00 0.00 2.18
169 170 4.811969 TTAACAGGCGTGGAATCTTAGA 57.188 40.909 11.67 0.00 0.00 2.10
170 171 3.695830 AACAGGCGTGGAATCTTAGAA 57.304 42.857 11.67 0.00 0.00 2.10
171 172 3.695830 ACAGGCGTGGAATCTTAGAAA 57.304 42.857 11.67 0.00 0.00 2.52
172 173 4.015872 ACAGGCGTGGAATCTTAGAAAA 57.984 40.909 11.67 0.00 0.00 2.29
173 174 4.589908 ACAGGCGTGGAATCTTAGAAAAT 58.410 39.130 11.67 0.00 0.00 1.82
174 175 4.396166 ACAGGCGTGGAATCTTAGAAAATG 59.604 41.667 11.67 0.00 0.00 2.32
175 176 4.396166 CAGGCGTGGAATCTTAGAAAATGT 59.604 41.667 0.00 0.00 0.00 2.71
176 177 5.584649 CAGGCGTGGAATCTTAGAAAATGTA 59.415 40.000 0.00 0.00 0.00 2.29
177 178 5.585047 AGGCGTGGAATCTTAGAAAATGTAC 59.415 40.000 0.00 0.00 0.00 2.90
178 179 5.220796 GGCGTGGAATCTTAGAAAATGTACC 60.221 44.000 0.00 0.00 0.00 3.34
179 180 5.501897 GCGTGGAATCTTAGAAAATGTACCG 60.502 44.000 0.00 0.00 0.00 4.02
180 181 5.579511 CGTGGAATCTTAGAAAATGTACCGT 59.420 40.000 0.00 0.00 0.00 4.83
181 182 6.455113 CGTGGAATCTTAGAAAATGTACCGTG 60.455 42.308 0.00 0.00 0.00 4.94
182 183 6.592607 GTGGAATCTTAGAAAATGTACCGTGA 59.407 38.462 0.00 0.00 0.00 4.35
183 184 7.280205 GTGGAATCTTAGAAAATGTACCGTGAT 59.720 37.037 0.00 0.00 0.00 3.06
184 185 7.279981 TGGAATCTTAGAAAATGTACCGTGATG 59.720 37.037 0.00 0.00 0.00 3.07
185 186 7.254795 GGAATCTTAGAAAATGTACCGTGATGG 60.255 40.741 0.00 0.00 46.41 3.51
196 197 2.945447 CCGTGATGGTGCAAATCAAT 57.055 45.000 13.42 0.00 35.87 2.57
197 198 3.235157 CCGTGATGGTGCAAATCAATT 57.765 42.857 13.42 0.00 35.87 2.32
198 199 2.924926 CCGTGATGGTGCAAATCAATTG 59.075 45.455 13.42 0.00 42.21 2.32
199 200 3.577667 CGTGATGGTGCAAATCAATTGT 58.422 40.909 13.42 0.00 41.32 2.71
200 201 3.609373 CGTGATGGTGCAAATCAATTGTC 59.391 43.478 13.42 2.68 41.32 3.18
201 202 4.558178 GTGATGGTGCAAATCAATTGTCA 58.442 39.130 13.42 0.00 41.32 3.58
202 203 4.624024 GTGATGGTGCAAATCAATTGTCAG 59.376 41.667 13.42 0.00 41.32 3.51
203 204 4.281435 TGATGGTGCAAATCAATTGTCAGT 59.719 37.500 10.19 0.00 41.32 3.41
204 205 5.476254 TGATGGTGCAAATCAATTGTCAGTA 59.524 36.000 10.19 0.00 41.32 2.74
205 206 5.119931 TGGTGCAAATCAATTGTCAGTAC 57.880 39.130 5.13 4.36 41.32 2.73
206 207 4.022416 TGGTGCAAATCAATTGTCAGTACC 60.022 41.667 16.52 16.52 41.32 3.34
207 208 4.218417 GGTGCAAATCAATTGTCAGTACCT 59.782 41.667 5.13 0.00 41.32 3.08
208 209 5.393962 GTGCAAATCAATTGTCAGTACCTC 58.606 41.667 5.13 0.00 41.32 3.85
209 210 4.154015 TGCAAATCAATTGTCAGTACCTCG 59.846 41.667 5.13 0.00 41.32 4.63
210 211 4.437390 GCAAATCAATTGTCAGTACCTCGG 60.437 45.833 5.13 0.00 41.32 4.63
211 212 4.553330 AATCAATTGTCAGTACCTCGGT 57.447 40.909 5.13 0.00 0.00 4.69
212 213 3.587797 TCAATTGTCAGTACCTCGGTC 57.412 47.619 5.13 0.00 0.00 4.79
213 214 2.232941 TCAATTGTCAGTACCTCGGTCC 59.767 50.000 5.13 0.00 0.00 4.46
214 215 1.192428 ATTGTCAGTACCTCGGTCCC 58.808 55.000 0.00 0.00 0.00 4.46
215 216 0.178955 TTGTCAGTACCTCGGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
216 217 0.178955 TGTCAGTACCTCGGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
217 218 0.971386 GTCAGTACCTCGGTCCCAAA 59.029 55.000 0.00 0.00 0.00 3.28
218 219 1.345415 GTCAGTACCTCGGTCCCAAAA 59.655 52.381 0.00 0.00 0.00 2.44
219 220 2.027469 GTCAGTACCTCGGTCCCAAAAT 60.027 50.000 0.00 0.00 0.00 1.82
220 221 3.196254 GTCAGTACCTCGGTCCCAAAATA 59.804 47.826 0.00 0.00 0.00 1.40
221 222 3.196254 TCAGTACCTCGGTCCCAAAATAC 59.804 47.826 0.00 0.00 0.00 1.89
222 223 2.502947 AGTACCTCGGTCCCAAAATACC 59.497 50.000 0.00 0.00 0.00 2.73
223 224 1.364269 ACCTCGGTCCCAAAATACCA 58.636 50.000 0.00 0.00 35.35 3.25
224 225 1.706305 ACCTCGGTCCCAAAATACCAA 59.294 47.619 0.00 0.00 35.35 3.67
225 226 2.290705 ACCTCGGTCCCAAAATACCAAG 60.291 50.000 0.00 0.00 35.35 3.61
226 227 2.026636 CCTCGGTCCCAAAATACCAAGA 60.027 50.000 0.00 0.00 35.35 3.02
227 228 3.007635 CTCGGTCCCAAAATACCAAGAC 58.992 50.000 0.00 0.00 35.35 3.01
228 229 1.735571 CGGTCCCAAAATACCAAGACG 59.264 52.381 0.00 0.00 35.35 4.18
229 230 2.786777 GGTCCCAAAATACCAAGACGT 58.213 47.619 0.00 0.00 35.73 4.34
230 231 3.151554 GGTCCCAAAATACCAAGACGTT 58.848 45.455 0.00 0.00 35.73 3.99
231 232 3.570975 GGTCCCAAAATACCAAGACGTTT 59.429 43.478 0.00 0.00 35.73 3.60
232 233 4.038282 GGTCCCAAAATACCAAGACGTTTT 59.962 41.667 0.00 0.00 35.73 2.43
233 234 5.452216 GGTCCCAAAATACCAAGACGTTTTT 60.452 40.000 0.00 0.00 35.73 1.94
234 235 5.460748 GTCCCAAAATACCAAGACGTTTTTG 59.539 40.000 10.83 10.83 37.14 2.44
235 236 5.127356 TCCCAAAATACCAAGACGTTTTTGT 59.873 36.000 14.73 9.03 36.18 2.83
236 237 6.320672 TCCCAAAATACCAAGACGTTTTTGTA 59.679 34.615 14.73 10.64 36.18 2.41
237 238 6.418523 CCCAAAATACCAAGACGTTTTTGTAC 59.581 38.462 14.73 0.00 36.18 2.90
238 239 6.141053 CCAAAATACCAAGACGTTTTTGTACG 59.859 38.462 14.73 0.00 46.52 3.67
239 240 2.742954 ACCAAGACGTTTTTGTACGC 57.257 45.000 11.31 0.00 45.06 4.42
240 241 2.282407 ACCAAGACGTTTTTGTACGCT 58.718 42.857 11.31 0.00 45.06 5.07
241 242 2.031191 ACCAAGACGTTTTTGTACGCTG 59.969 45.455 11.31 0.00 45.06 5.18
242 243 2.285756 CCAAGACGTTTTTGTACGCTGA 59.714 45.455 11.31 0.00 45.06 4.26
243 244 3.059188 CCAAGACGTTTTTGTACGCTGAT 60.059 43.478 11.31 0.00 45.06 2.90
244 245 4.523813 CAAGACGTTTTTGTACGCTGATT 58.476 39.130 0.00 0.00 45.06 2.57
245 246 4.128554 AGACGTTTTTGTACGCTGATTG 57.871 40.909 0.00 0.00 45.06 2.67
246 247 3.558418 AGACGTTTTTGTACGCTGATTGT 59.442 39.130 0.00 0.00 45.06 2.71
247 248 4.746115 AGACGTTTTTGTACGCTGATTGTA 59.254 37.500 0.00 0.00 45.06 2.41
248 249 5.013861 ACGTTTTTGTACGCTGATTGTAG 57.986 39.130 0.00 0.00 45.06 2.74
249 250 4.746115 ACGTTTTTGTACGCTGATTGTAGA 59.254 37.500 0.00 0.00 45.06 2.59
250 251 5.407387 ACGTTTTTGTACGCTGATTGTAGAT 59.593 36.000 0.00 0.00 45.06 1.98
251 252 5.728049 CGTTTTTGTACGCTGATTGTAGATG 59.272 40.000 0.00 0.00 34.45 2.90
252 253 6.599437 GTTTTTGTACGCTGATTGTAGATGT 58.401 36.000 0.00 0.00 0.00 3.06
253 254 6.795098 TTTTGTACGCTGATTGTAGATGTT 57.205 33.333 0.00 0.00 0.00 2.71
254 255 7.892778 TTTTGTACGCTGATTGTAGATGTTA 57.107 32.000 0.00 0.00 0.00 2.41
255 256 7.892778 TTTGTACGCTGATTGTAGATGTTAA 57.107 32.000 0.00 0.00 0.00 2.01
256 257 6.880822 TGTACGCTGATTGTAGATGTTAAC 57.119 37.500 0.00 0.00 0.00 2.01
257 258 6.627243 TGTACGCTGATTGTAGATGTTAACT 58.373 36.000 7.22 0.00 0.00 2.24
258 259 7.094631 TGTACGCTGATTGTAGATGTTAACTT 58.905 34.615 7.22 0.00 0.00 2.66
259 260 7.601130 TGTACGCTGATTGTAGATGTTAACTTT 59.399 33.333 7.22 0.00 0.00 2.66
260 261 7.435068 ACGCTGATTGTAGATGTTAACTTTT 57.565 32.000 7.22 0.00 0.00 2.27
261 262 7.871853 ACGCTGATTGTAGATGTTAACTTTTT 58.128 30.769 7.22 0.00 0.00 1.94
280 281 5.508200 TTTTTGTCACTGGCGTAAATTCT 57.492 34.783 0.00 0.00 0.00 2.40
281 282 5.508200 TTTTGTCACTGGCGTAAATTCTT 57.492 34.783 0.00 0.00 0.00 2.52
282 283 6.621316 TTTTGTCACTGGCGTAAATTCTTA 57.379 33.333 0.00 0.00 0.00 2.10
283 284 5.856126 TTGTCACTGGCGTAAATTCTTAG 57.144 39.130 0.00 0.00 0.00 2.18
284 285 5.142061 TGTCACTGGCGTAAATTCTTAGA 57.858 39.130 0.00 0.00 0.00 2.10
285 286 5.543714 TGTCACTGGCGTAAATTCTTAGAA 58.456 37.500 0.00 0.00 0.00 2.10
286 287 5.992829 TGTCACTGGCGTAAATTCTTAGAAA 59.007 36.000 0.00 0.00 0.00 2.52
287 288 6.483974 TGTCACTGGCGTAAATTCTTAGAAAA 59.516 34.615 0.00 0.00 0.00 2.29
311 312 6.995511 TGTACTGTAAATTCATTGTAGCCC 57.004 37.500 0.00 0.00 0.00 5.19
327 328 1.702491 GCCCGTGACTGGCGTAAATC 61.702 60.000 1.37 0.00 39.48 2.17
329 330 0.390603 CCGTGACTGGCGTAAATCCA 60.391 55.000 0.00 0.00 0.00 3.41
330 331 1.651987 CGTGACTGGCGTAAATCCAT 58.348 50.000 0.00 0.00 32.37 3.41
342 343 9.097257 CTGGCGTAAATCCATTTTTGATAAATT 57.903 29.630 0.00 0.00 32.37 1.82
343 344 8.877779 TGGCGTAAATCCATTTTTGATAAATTG 58.122 29.630 0.00 0.00 0.00 2.32
344 345 8.878769 GGCGTAAATCCATTTTTGATAAATTGT 58.121 29.630 0.00 0.00 0.00 2.71
366 367 5.299279 TGTTGTCCTCCAGAAAACTCATTTC 59.701 40.000 0.00 0.00 42.47 2.17
389 393 1.563924 TGTACACCGATAAGCCCACT 58.436 50.000 0.00 0.00 0.00 4.00
398 402 0.107165 ATAAGCCCACTTCCTTCCGC 60.107 55.000 0.00 0.00 37.33 5.54
399 403 1.485294 TAAGCCCACTTCCTTCCGCA 61.485 55.000 0.00 0.00 37.33 5.69
444 448 0.035343 GTTAACTGGAGGCCCTGTCC 60.035 60.000 0.00 0.00 42.83 4.02
448 452 2.930019 TGGAGGCCCTGTCCAGTG 60.930 66.667 8.12 0.00 39.28 3.66
449 453 2.930562 GGAGGCCCTGTCCAGTGT 60.931 66.667 0.00 0.00 33.84 3.55
450 454 2.529744 GGAGGCCCTGTCCAGTGTT 61.530 63.158 0.00 0.00 33.84 3.32
452 456 0.690762 GAGGCCCTGTCCAGTGTTAA 59.309 55.000 0.00 0.00 0.00 2.01
453 457 0.400594 AGGCCCTGTCCAGTGTTAAC 59.599 55.000 0.00 0.00 0.00 2.01
454 458 0.608308 GGCCCTGTCCAGTGTTAACC 60.608 60.000 2.48 0.00 0.00 2.85
455 459 0.400594 GCCCTGTCCAGTGTTAACCT 59.599 55.000 2.48 0.00 0.00 3.50
456 460 1.610886 GCCCTGTCCAGTGTTAACCTC 60.611 57.143 2.48 0.00 0.00 3.85
457 461 1.978580 CCCTGTCCAGTGTTAACCTCT 59.021 52.381 2.48 0.00 0.00 3.69
470 474 3.141488 CCTCTGAGGTCCGACGGG 61.141 72.222 15.25 0.00 0.00 5.28
500 513 4.054455 CGTCGGCGTCAAACGTGG 62.054 66.667 6.85 0.00 44.73 4.94
839 861 0.970937 TCGCCCTCTCCTTCGACATT 60.971 55.000 0.00 0.00 0.00 2.71
849 877 1.424493 CTTCGACATTGGCGAGCTCC 61.424 60.000 15.19 0.47 39.14 4.70
878 906 4.634703 TTCCGCCGCTGCCTTGAA 62.635 61.111 0.00 0.00 0.00 2.69
920 948 2.357517 GACCTGCACGTCCACCTG 60.358 66.667 4.65 0.00 0.00 4.00
1037 1067 3.775654 CTCCTTCTCCGCCCGCTT 61.776 66.667 0.00 0.00 0.00 4.68
1099 3869 3.188786 GCATCTCCGACGGCACAC 61.189 66.667 9.66 0.00 0.00 3.82
1102 3872 2.711922 ATCTCCGACGGCACACTCC 61.712 63.158 9.66 0.00 0.00 3.85
1171 3941 0.532573 CTGCGAAGGCCTCTACTTCA 59.467 55.000 5.23 0.00 43.43 3.02
1182 3952 0.100682 TCTACTTCATCAGCGTCGCC 59.899 55.000 14.86 0.00 0.00 5.54
1219 3989 3.050275 GGAGCCTCACCGTTGCAC 61.050 66.667 0.00 0.00 0.00 4.57
1309 4079 1.227973 GCCTACATGCCTGCCTACC 60.228 63.158 0.00 0.00 0.00 3.18
1365 4138 0.541998 TCTGCTTCGGAGGACCTGAA 60.542 55.000 0.00 0.00 0.00 3.02
1443 4270 1.194121 TGCTTACCCTCTGCAGCAGA 61.194 55.000 23.98 23.98 37.35 4.26
1492 4319 0.179009 CATGCCATCCGGGTTGATCT 60.179 55.000 0.00 0.00 39.65 2.75
1642 4477 2.967599 TCAGCTACTGATGTTCGCAT 57.032 45.000 0.00 0.00 41.22 4.73
1673 4508 5.072823 CGACAACATGAACGACATTTACTG 58.927 41.667 0.00 0.00 37.07 2.74
1680 4515 5.917541 TGAACGACATTTACTGTTTCCTC 57.082 39.130 0.00 0.00 38.54 3.71
1731 4566 4.394920 AGGTTATTTGTGCAGGTGAATACG 59.605 41.667 0.00 0.00 0.00 3.06
1753 4588 4.273235 CGAGCTGTTGTATATTCCATTGCA 59.727 41.667 0.00 0.00 0.00 4.08
1771 4606 3.051327 TGCATGATGACTTTTGTTTGCG 58.949 40.909 0.00 0.00 0.00 4.85
1773 4608 4.225984 GCATGATGACTTTTGTTTGCGTA 58.774 39.130 0.00 0.00 0.00 4.42
1789 4676 6.908284 TGTTTGCGTACACTGTTAAAGAAATC 59.092 34.615 0.00 0.00 0.00 2.17
1790 4677 6.606234 TTGCGTACACTGTTAAAGAAATCA 57.394 33.333 0.00 0.00 0.00 2.57
1808 4698 5.505181 AATCACCTTATGACCTTGACTGT 57.495 39.130 0.00 0.00 41.24 3.55
1815 4705 6.440647 ACCTTATGACCTTGACTGTATTCAGA 59.559 38.462 6.32 0.00 43.76 3.27
1893 4792 1.377994 CACCCTCTTGCAGCTTCCT 59.622 57.895 0.00 0.00 0.00 3.36
1909 4808 6.256757 GCAGCTTCCTACAAGTAGTTATCAAG 59.743 42.308 6.50 2.58 0.00 3.02
1951 4850 5.511716 CCATCAGGATCAGAATCAGAGGAAG 60.512 48.000 0.00 0.00 36.89 3.46
2011 4910 6.747125 TCAGATGAAGATGAGCTAGATGAAC 58.253 40.000 0.00 0.00 0.00 3.18
2016 4915 6.705302 TGAAGATGAGCTAGATGAACACTTT 58.295 36.000 0.00 0.00 0.00 2.66
2064 4963 1.687996 GGGCTAGAGGAAGAGCTGTCT 60.688 57.143 0.00 0.00 38.79 3.41
2085 4984 4.073201 GGAGATGCCCTGGAGGAA 57.927 61.111 0.00 0.00 38.24 3.36
2086 4985 1.835693 GGAGATGCCCTGGAGGAAG 59.164 63.158 0.00 0.00 38.24 3.46
2087 4986 0.692419 GGAGATGCCCTGGAGGAAGA 60.692 60.000 0.00 0.00 38.24 2.87
2088 4987 0.758123 GAGATGCCCTGGAGGAAGAG 59.242 60.000 0.00 0.00 38.24 2.85
2089 4988 1.148048 GATGCCCTGGAGGAAGAGC 59.852 63.158 0.00 0.00 38.24 4.09
2090 4989 1.307691 ATGCCCTGGAGGAAGAGCT 60.308 57.895 0.00 0.00 38.24 4.09
2091 4990 1.633915 ATGCCCTGGAGGAAGAGCTG 61.634 60.000 0.00 0.00 38.24 4.24
2092 4991 2.297129 GCCCTGGAGGAAGAGCTGT 61.297 63.158 0.00 0.00 38.24 4.40
2093 4992 1.904032 CCCTGGAGGAAGAGCTGTC 59.096 63.158 0.00 0.00 38.24 3.51
2094 4993 0.906756 CCCTGGAGGAAGAGCTGTCA 60.907 60.000 0.00 0.00 38.24 3.58
2099 4998 0.823460 GAGGAAGAGCTGTCAGAGGG 59.177 60.000 3.32 0.00 0.00 4.30
2153 5052 3.176924 TGACCTAGAGGAAGAGCTGTT 57.823 47.619 1.60 0.00 38.94 3.16
2154 5053 2.828520 TGACCTAGAGGAAGAGCTGTTG 59.171 50.000 0.00 0.00 38.94 3.33
2262 5239 4.515028 ATCTGATGGAGATGGCTTTGAA 57.485 40.909 0.00 0.00 40.19 2.69
2346 5323 5.930135 AGCCTTTTCTTGAAGAAGTCTACA 58.070 37.500 7.76 0.00 35.37 2.74
2597 7586 9.720667 CAGATAATGCGAAATATCAGAAACAAA 57.279 29.630 1.28 0.00 32.17 2.83
2598 7587 9.941664 AGATAATGCGAAATATCAGAAACAAAG 57.058 29.630 1.28 0.00 32.17 2.77
2667 10764 2.416747 TGCTGTGTTCTGTAGTGCATC 58.583 47.619 0.00 0.00 0.00 3.91
2677 10774 5.363562 TCTGTAGTGCATCAAGGATCATT 57.636 39.130 0.00 0.00 0.00 2.57
2686 10783 6.039047 GTGCATCAAGGATCATTGAGTATGTT 59.961 38.462 25.11 7.31 42.20 2.71
2692 10789 6.550938 AGGATCATTGAGTATGTTGTCTGA 57.449 37.500 0.00 0.00 35.64 3.27
2694 10791 6.382282 AGGATCATTGAGTATGTTGTCTGAGA 59.618 38.462 0.00 0.00 35.64 3.27
2710 10807 4.568760 GTCTGAGACTTATACTTTGCAGCC 59.431 45.833 5.12 0.00 0.00 4.85
2817 10936 3.641436 TGTAGAAAGCTGAGACTTGGTGA 59.359 43.478 0.00 0.00 0.00 4.02
2818 10937 3.118905 AGAAAGCTGAGACTTGGTGAC 57.881 47.619 0.00 0.00 0.00 3.67
2819 10938 2.435805 AGAAAGCTGAGACTTGGTGACA 59.564 45.455 0.00 0.00 39.83 3.58
2820 10939 2.540265 AAGCTGAGACTTGGTGACAG 57.460 50.000 0.00 0.00 44.54 3.51
2821 10940 0.683973 AGCTGAGACTTGGTGACAGG 59.316 55.000 0.00 0.00 44.54 4.00
2822 10941 0.681733 GCTGAGACTTGGTGACAGGA 59.318 55.000 0.00 0.00 44.54 3.86
2824 10943 2.485479 GCTGAGACTTGGTGACAGGAAA 60.485 50.000 0.00 0.00 44.54 3.13
2825 10944 3.397482 CTGAGACTTGGTGACAGGAAAG 58.603 50.000 0.00 0.00 44.54 2.62
2827 10946 3.964688 TGAGACTTGGTGACAGGAAAGTA 59.035 43.478 0.00 0.00 44.54 2.24
2829 10948 5.071788 TGAGACTTGGTGACAGGAAAGTATT 59.928 40.000 0.00 0.00 44.54 1.89
2832 10951 6.042781 AGACTTGGTGACAGGAAAGTATTACA 59.957 38.462 0.00 0.00 44.54 2.41
2835 10968 6.428083 TGGTGACAGGAAAGTATTACAAGA 57.572 37.500 0.00 0.00 35.01 3.02
2874 11015 1.029947 CCGGTATGGCAGTGGGTTTC 61.030 60.000 0.00 0.00 0.00 2.78
2960 11104 2.072298 CTTTTCCTGGCGTCAAGAGAG 58.928 52.381 0.00 0.00 0.00 3.20
2982 11126 7.927048 AGAGAAACCAAAACATGTACAGTAAC 58.073 34.615 0.00 0.00 0.00 2.50
2997 11141 6.824196 TGTACAGTAACATGGAGTTTCAACAA 59.176 34.615 0.00 0.00 41.64 2.83
3052 11196 7.012044 GGTACTAGTTGTGGCCAAATTATGTAG 59.988 40.741 7.24 5.10 30.40 2.74
3060 11207 4.278170 TGGCCAAATTATGTAGTGCTATGC 59.722 41.667 0.61 0.00 0.00 3.14
3135 11301 9.938280 ATGTGTAGTATTGTTAACTCAGCTTAA 57.062 29.630 7.22 0.00 0.00 1.85
3136 11302 9.938280 TGTGTAGTATTGTTAACTCAGCTTAAT 57.062 29.630 7.22 0.00 0.00 1.40
3183 11351 6.504398 ACATATGACTACACAATACAGGTCG 58.496 40.000 10.38 0.00 0.00 4.79
3186 11354 3.442625 TGACTACACAATACAGGTCGAGG 59.557 47.826 0.00 0.00 0.00 4.63
3208 11376 4.044426 GCTGCCACTTTTAGTTCTTTGTG 58.956 43.478 0.00 0.00 0.00 3.33
3249 11417 2.325484 TCAGTTAAGCCTGTCACTGGA 58.675 47.619 4.57 0.00 37.77 3.86
3272 11442 2.206576 ACTCAGGGAATTTGTGGCTC 57.793 50.000 0.00 0.00 0.00 4.70
3285 11455 0.107312 GTGGCTCCTGACAGCATCAT 60.107 55.000 0.00 0.00 41.65 2.45
3361 11691 6.562518 GTCGAGTATATTATCTGGCCCTTAC 58.437 44.000 0.00 0.00 0.00 2.34
3371 11701 0.698238 TGGCCCTTACATTCTGCACT 59.302 50.000 0.00 0.00 0.00 4.40
3384 11714 7.817418 ACATTCTGCACTTTAAACTCCTTAA 57.183 32.000 0.00 0.00 0.00 1.85
3385 11715 8.232913 ACATTCTGCACTTTAAACTCCTTAAA 57.767 30.769 0.00 0.00 37.18 1.52
3439 11769 5.235616 TCTGAATCAACGTTGTTACCTTGTC 59.764 40.000 26.47 12.57 0.00 3.18
3461 11791 2.668457 GGTGTCTGCTATGAACGAACTG 59.332 50.000 0.00 0.00 0.00 3.16
3495 11825 0.669318 CGACAGCGGGCAAGAAAGTA 60.669 55.000 0.00 0.00 0.00 2.24
3543 11873 2.030007 GCTGAGACCTGCTATGCTCTAG 60.030 54.545 0.00 0.00 34.82 2.43
3544 11874 3.221771 CTGAGACCTGCTATGCTCTAGT 58.778 50.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.730420 GTGAAAACATAACACTCTAATTGTTGT 57.270 29.630 0.00 0.00 37.73 3.32
12 13 9.729023 TGTGAAAACATAACACTCTAATTGTTG 57.271 29.630 0.00 0.00 37.73 3.33
13 14 9.730420 GTGTGAAAACATAACACTCTAATTGTT 57.270 29.630 0.00 0.00 40.79 2.83
23 24 7.012044 ACAAGGAGTAGTGTGAAAACATAACAC 59.988 37.037 0.00 0.00 43.60 3.32
24 25 7.051623 ACAAGGAGTAGTGTGAAAACATAACA 58.948 34.615 0.00 0.00 0.00 2.41
25 26 7.492352 ACAAGGAGTAGTGTGAAAACATAAC 57.508 36.000 0.00 0.00 0.00 1.89
26 27 8.402472 CAAACAAGGAGTAGTGTGAAAACATAA 58.598 33.333 0.00 0.00 0.00 1.90
27 28 7.554835 ACAAACAAGGAGTAGTGTGAAAACATA 59.445 33.333 0.00 0.00 29.99 2.29
28 29 6.377146 ACAAACAAGGAGTAGTGTGAAAACAT 59.623 34.615 0.00 0.00 29.99 2.71
29 30 5.708230 ACAAACAAGGAGTAGTGTGAAAACA 59.292 36.000 0.00 0.00 29.99 2.83
30 31 6.190954 ACAAACAAGGAGTAGTGTGAAAAC 57.809 37.500 0.00 0.00 29.99 2.43
31 32 6.207810 ACAACAAACAAGGAGTAGTGTGAAAA 59.792 34.615 0.00 0.00 31.17 2.29
32 33 5.708230 ACAACAAACAAGGAGTAGTGTGAAA 59.292 36.000 0.00 0.00 31.17 2.69
33 34 5.250200 ACAACAAACAAGGAGTAGTGTGAA 58.750 37.500 0.00 0.00 31.17 3.18
34 35 4.839121 ACAACAAACAAGGAGTAGTGTGA 58.161 39.130 0.00 0.00 31.17 3.58
35 36 6.861065 ATACAACAAACAAGGAGTAGTGTG 57.139 37.500 0.00 0.00 31.17 3.82
36 37 7.875327 AAATACAACAAACAAGGAGTAGTGT 57.125 32.000 0.00 0.00 31.83 3.55
37 38 8.287503 GGTAAATACAACAAACAAGGAGTAGTG 58.712 37.037 0.00 0.00 0.00 2.74
38 39 7.994334 TGGTAAATACAACAAACAAGGAGTAGT 59.006 33.333 0.00 0.00 0.00 2.73
39 40 8.385898 TGGTAAATACAACAAACAAGGAGTAG 57.614 34.615 0.00 0.00 0.00 2.57
40 41 8.927675 ATGGTAAATACAACAAACAAGGAGTA 57.072 30.769 0.00 0.00 0.00 2.59
41 42 7.724061 AGATGGTAAATACAACAAACAAGGAGT 59.276 33.333 0.00 0.00 0.00 3.85
42 43 8.110860 AGATGGTAAATACAACAAACAAGGAG 57.889 34.615 0.00 0.00 0.00 3.69
43 44 8.472007 AAGATGGTAAATACAACAAACAAGGA 57.528 30.769 0.00 0.00 0.00 3.36
44 45 8.356657 TGAAGATGGTAAATACAACAAACAAGG 58.643 33.333 0.00 0.00 0.00 3.61
45 46 9.912634 ATGAAGATGGTAAATACAACAAACAAG 57.087 29.630 0.00 0.00 0.00 3.16
47 48 9.689976 CAATGAAGATGGTAAATACAACAAACA 57.310 29.630 0.00 0.00 0.00 2.83
48 49 9.906660 TCAATGAAGATGGTAAATACAACAAAC 57.093 29.630 0.00 0.00 0.00 2.93
51 52 9.460019 TCATCAATGAAGATGGTAAATACAACA 57.540 29.630 4.33 0.00 44.30 3.33
58 59 9.022884 TGTCAAATCATCAATGAAGATGGTAAA 57.977 29.630 1.47 0.00 44.30 2.01
59 60 8.578448 TGTCAAATCATCAATGAAGATGGTAA 57.422 30.769 1.47 0.00 44.30 2.85
60 61 8.756486 ATGTCAAATCATCAATGAAGATGGTA 57.244 30.769 1.47 0.00 44.30 3.25
61 62 7.655521 ATGTCAAATCATCAATGAAGATGGT 57.344 32.000 1.47 0.00 44.30 3.55
115 116 7.840342 TGTTGTTGTGCATGATTTAGTTTTT 57.160 28.000 0.00 0.00 0.00 1.94
116 117 9.709495 ATATGTTGTTGTGCATGATTTAGTTTT 57.291 25.926 0.00 0.00 0.00 2.43
117 118 9.142515 CATATGTTGTTGTGCATGATTTAGTTT 57.857 29.630 0.00 0.00 0.00 2.66
118 119 7.760794 CCATATGTTGTTGTGCATGATTTAGTT 59.239 33.333 0.00 0.00 0.00 2.24
119 120 7.122501 TCCATATGTTGTTGTGCATGATTTAGT 59.877 33.333 0.00 0.00 0.00 2.24
120 121 7.482474 TCCATATGTTGTTGTGCATGATTTAG 58.518 34.615 0.00 0.00 0.00 1.85
121 122 7.122501 ACTCCATATGTTGTTGTGCATGATTTA 59.877 33.333 0.00 0.00 0.00 1.40
122 123 6.071221 ACTCCATATGTTGTTGTGCATGATTT 60.071 34.615 0.00 0.00 0.00 2.17
123 124 5.419788 ACTCCATATGTTGTTGTGCATGATT 59.580 36.000 0.00 0.00 0.00 2.57
124 125 4.951715 ACTCCATATGTTGTTGTGCATGAT 59.048 37.500 0.00 0.00 0.00 2.45
125 126 4.334552 ACTCCATATGTTGTTGTGCATGA 58.665 39.130 0.00 0.00 0.00 3.07
126 127 4.707030 ACTCCATATGTTGTTGTGCATG 57.293 40.909 1.24 0.00 0.00 4.06
127 128 5.726980 AAACTCCATATGTTGTTGTGCAT 57.273 34.783 10.14 0.00 0.00 3.96
128 129 6.039829 TGTTAAACTCCATATGTTGTTGTGCA 59.960 34.615 10.14 0.00 0.00 4.57
129 130 6.442952 TGTTAAACTCCATATGTTGTTGTGC 58.557 36.000 10.14 5.71 0.00 4.57
130 131 7.083858 CCTGTTAAACTCCATATGTTGTTGTG 58.916 38.462 10.14 0.00 0.00 3.33
131 132 6.294508 GCCTGTTAAACTCCATATGTTGTTGT 60.295 38.462 10.14 5.36 0.00 3.32
132 133 6.092748 GCCTGTTAAACTCCATATGTTGTTG 58.907 40.000 10.14 1.20 0.00 3.33
133 134 5.106317 CGCCTGTTAAACTCCATATGTTGTT 60.106 40.000 1.24 3.59 0.00 2.83
134 135 4.394920 CGCCTGTTAAACTCCATATGTTGT 59.605 41.667 1.24 0.00 0.00 3.32
135 136 4.394920 ACGCCTGTTAAACTCCATATGTTG 59.605 41.667 1.24 0.00 0.00 3.33
136 137 4.394920 CACGCCTGTTAAACTCCATATGTT 59.605 41.667 1.24 0.00 0.00 2.71
137 138 3.938963 CACGCCTGTTAAACTCCATATGT 59.061 43.478 1.24 0.00 0.00 2.29
138 139 3.312421 CCACGCCTGTTAAACTCCATATG 59.688 47.826 0.00 0.00 0.00 1.78
139 140 3.199071 TCCACGCCTGTTAAACTCCATAT 59.801 43.478 0.00 0.00 0.00 1.78
140 141 2.568062 TCCACGCCTGTTAAACTCCATA 59.432 45.455 0.00 0.00 0.00 2.74
141 142 1.349688 TCCACGCCTGTTAAACTCCAT 59.650 47.619 0.00 0.00 0.00 3.41
142 143 0.759959 TCCACGCCTGTTAAACTCCA 59.240 50.000 0.00 0.00 0.00 3.86
143 144 1.886886 TTCCACGCCTGTTAAACTCC 58.113 50.000 0.00 0.00 0.00 3.85
144 145 3.335579 AGATTCCACGCCTGTTAAACTC 58.664 45.455 0.00 0.00 0.00 3.01
145 146 3.418684 AGATTCCACGCCTGTTAAACT 57.581 42.857 0.00 0.00 0.00 2.66
146 147 4.933400 TCTAAGATTCCACGCCTGTTAAAC 59.067 41.667 0.00 0.00 0.00 2.01
147 148 5.155278 TCTAAGATTCCACGCCTGTTAAA 57.845 39.130 0.00 0.00 0.00 1.52
148 149 4.811969 TCTAAGATTCCACGCCTGTTAA 57.188 40.909 0.00 0.00 0.00 2.01
149 150 4.811969 TTCTAAGATTCCACGCCTGTTA 57.188 40.909 0.00 0.00 0.00 2.41
150 151 3.695830 TTCTAAGATTCCACGCCTGTT 57.304 42.857 0.00 0.00 0.00 3.16
151 152 3.695830 TTTCTAAGATTCCACGCCTGT 57.304 42.857 0.00 0.00 0.00 4.00
152 153 4.396166 ACATTTTCTAAGATTCCACGCCTG 59.604 41.667 0.00 0.00 0.00 4.85
153 154 4.589908 ACATTTTCTAAGATTCCACGCCT 58.410 39.130 0.00 0.00 0.00 5.52
154 155 4.965119 ACATTTTCTAAGATTCCACGCC 57.035 40.909 0.00 0.00 0.00 5.68
155 156 5.501897 CGGTACATTTTCTAAGATTCCACGC 60.502 44.000 0.00 0.00 0.00 5.34
156 157 5.579511 ACGGTACATTTTCTAAGATTCCACG 59.420 40.000 0.00 0.00 0.00 4.94
157 158 6.592607 TCACGGTACATTTTCTAAGATTCCAC 59.407 38.462 0.00 0.00 0.00 4.02
158 159 6.703319 TCACGGTACATTTTCTAAGATTCCA 58.297 36.000 0.00 0.00 0.00 3.53
159 160 7.254795 CCATCACGGTACATTTTCTAAGATTCC 60.255 40.741 0.00 0.00 0.00 3.01
160 161 7.630924 CCATCACGGTACATTTTCTAAGATTC 58.369 38.462 0.00 0.00 0.00 2.52
161 162 7.553881 CCATCACGGTACATTTTCTAAGATT 57.446 36.000 0.00 0.00 0.00 2.40
174 175 8.710277 ACAATTGATTTGCACCATCACGGTAC 62.710 42.308 13.59 0.00 42.32 3.34
175 176 6.781543 ACAATTGATTTGCACCATCACGGTA 61.782 40.000 13.59 0.00 42.32 4.02
176 177 6.064478 ACAATTGATTTGCACCATCACGGT 62.064 41.667 13.59 4.23 43.46 4.83
177 178 2.924926 CAATTGATTTGCACCATCACGG 59.075 45.455 0.00 0.00 42.50 4.94
178 179 3.577667 ACAATTGATTTGCACCATCACG 58.422 40.909 13.59 3.13 39.03 4.35
179 180 4.558178 TGACAATTGATTTGCACCATCAC 58.442 39.130 13.59 0.00 39.03 3.06
180 181 4.281435 ACTGACAATTGATTTGCACCATCA 59.719 37.500 13.59 3.98 39.03 3.07
181 182 4.813027 ACTGACAATTGATTTGCACCATC 58.187 39.130 13.59 0.00 39.03 3.51
182 183 4.877378 ACTGACAATTGATTTGCACCAT 57.123 36.364 13.59 0.00 39.03 3.55
183 184 4.022416 GGTACTGACAATTGATTTGCACCA 60.022 41.667 13.59 0.00 39.03 4.17
184 185 4.218417 AGGTACTGACAATTGATTTGCACC 59.782 41.667 13.59 11.31 36.43 5.01
185 186 5.376854 AGGTACTGACAATTGATTTGCAC 57.623 39.130 13.59 2.71 36.43 4.57
186 187 4.154015 CGAGGTACTGACAATTGATTTGCA 59.846 41.667 13.59 1.47 41.55 4.08
187 188 4.437390 CCGAGGTACTGACAATTGATTTGC 60.437 45.833 13.59 0.00 41.55 3.68
188 189 4.695455 ACCGAGGTACTGACAATTGATTTG 59.305 41.667 13.59 1.96 41.55 2.32
189 190 4.906618 ACCGAGGTACTGACAATTGATTT 58.093 39.130 13.59 0.00 41.55 2.17
190 191 4.504858 GACCGAGGTACTGACAATTGATT 58.495 43.478 13.59 0.00 41.55 2.57
191 192 3.118738 GGACCGAGGTACTGACAATTGAT 60.119 47.826 13.59 0.00 41.55 2.57
192 193 2.232941 GGACCGAGGTACTGACAATTGA 59.767 50.000 13.59 0.00 41.55 2.57
193 194 2.618053 GGACCGAGGTACTGACAATTG 58.382 52.381 3.24 3.24 41.55 2.32
194 195 1.553704 GGGACCGAGGTACTGACAATT 59.446 52.381 4.27 0.00 41.55 2.32
195 196 1.192428 GGGACCGAGGTACTGACAAT 58.808 55.000 4.27 0.00 41.55 2.71
196 197 0.178955 TGGGACCGAGGTACTGACAA 60.179 55.000 4.27 0.00 41.55 3.18
197 198 0.178955 TTGGGACCGAGGTACTGACA 60.179 55.000 4.27 0.00 41.55 3.58
198 199 0.971386 TTTGGGACCGAGGTACTGAC 59.029 55.000 4.27 0.00 41.55 3.51
199 200 1.719529 TTTTGGGACCGAGGTACTGA 58.280 50.000 4.27 0.00 41.55 3.41
200 201 2.781681 ATTTTGGGACCGAGGTACTG 57.218 50.000 4.27 0.00 41.55 2.74
201 202 4.078339 TGGTATTTTGGGACCGAGGTACT 61.078 47.826 4.27 0.00 38.69 2.73
202 203 2.236893 TGGTATTTTGGGACCGAGGTAC 59.763 50.000 0.00 0.00 38.69 3.34
203 204 2.549082 TGGTATTTTGGGACCGAGGTA 58.451 47.619 0.00 0.00 38.69 3.08
204 205 1.364269 TGGTATTTTGGGACCGAGGT 58.636 50.000 0.00 0.00 38.69 3.85
205 206 2.026636 TCTTGGTATTTTGGGACCGAGG 60.027 50.000 8.18 0.00 44.51 4.63
206 207 3.007635 GTCTTGGTATTTTGGGACCGAG 58.992 50.000 2.36 2.36 45.40 4.63
207 208 2.613474 CGTCTTGGTATTTTGGGACCGA 60.613 50.000 0.00 0.00 38.69 4.69
208 209 1.735571 CGTCTTGGTATTTTGGGACCG 59.264 52.381 0.00 0.00 38.69 4.79
209 210 2.786777 ACGTCTTGGTATTTTGGGACC 58.213 47.619 0.00 0.00 36.17 4.46
210 211 4.841443 AAACGTCTTGGTATTTTGGGAC 57.159 40.909 0.00 0.00 0.00 4.46
211 212 5.127356 ACAAAAACGTCTTGGTATTTTGGGA 59.873 36.000 18.41 0.00 42.38 4.37
212 213 5.353111 ACAAAAACGTCTTGGTATTTTGGG 58.647 37.500 18.41 1.57 42.38 4.12
213 214 6.141053 CGTACAAAAACGTCTTGGTATTTTGG 59.859 38.462 18.41 2.18 42.38 3.28
214 215 6.344390 GCGTACAAAAACGTCTTGGTATTTTG 60.344 38.462 14.58 14.58 44.64 2.44
215 216 5.682422 GCGTACAAAAACGTCTTGGTATTTT 59.318 36.000 13.20 1.49 44.64 1.82
216 217 5.007921 AGCGTACAAAAACGTCTTGGTATTT 59.992 36.000 13.20 0.00 44.64 1.40
217 218 4.512571 AGCGTACAAAAACGTCTTGGTATT 59.487 37.500 13.20 0.00 44.64 1.89
218 219 4.060205 AGCGTACAAAAACGTCTTGGTAT 58.940 39.130 13.20 0.00 44.64 2.73
219 220 3.245754 CAGCGTACAAAAACGTCTTGGTA 59.754 43.478 13.20 0.29 44.64 3.25
220 221 2.031191 CAGCGTACAAAAACGTCTTGGT 59.969 45.455 13.20 1.26 44.64 3.67
221 222 2.285756 TCAGCGTACAAAAACGTCTTGG 59.714 45.455 13.20 0.00 44.64 3.61
222 223 3.579147 TCAGCGTACAAAAACGTCTTG 57.421 42.857 8.40 8.40 44.64 3.02
223 224 4.034742 ACAATCAGCGTACAAAAACGTCTT 59.965 37.500 0.00 0.00 44.64 3.01
224 225 3.558418 ACAATCAGCGTACAAAAACGTCT 59.442 39.130 0.00 0.00 44.64 4.18
225 226 3.868835 ACAATCAGCGTACAAAAACGTC 58.131 40.909 0.00 0.00 44.64 4.34
226 227 3.955771 ACAATCAGCGTACAAAAACGT 57.044 38.095 0.00 0.00 44.64 3.99
227 228 5.258685 TCTACAATCAGCGTACAAAAACG 57.741 39.130 0.00 0.00 45.58 3.60
228 229 6.599437 ACATCTACAATCAGCGTACAAAAAC 58.401 36.000 0.00 0.00 0.00 2.43
229 230 6.795098 ACATCTACAATCAGCGTACAAAAA 57.205 33.333 0.00 0.00 0.00 1.94
230 231 6.795098 AACATCTACAATCAGCGTACAAAA 57.205 33.333 0.00 0.00 0.00 2.44
231 232 7.601130 AGTTAACATCTACAATCAGCGTACAAA 59.399 33.333 8.61 0.00 0.00 2.83
232 233 7.094631 AGTTAACATCTACAATCAGCGTACAA 58.905 34.615 8.61 0.00 0.00 2.41
233 234 6.627243 AGTTAACATCTACAATCAGCGTACA 58.373 36.000 8.61 0.00 0.00 2.90
234 235 7.521509 AAGTTAACATCTACAATCAGCGTAC 57.478 36.000 8.61 0.00 0.00 3.67
235 236 8.542497 AAAAGTTAACATCTACAATCAGCGTA 57.458 30.769 8.61 0.00 0.00 4.42
236 237 7.435068 AAAAGTTAACATCTACAATCAGCGT 57.565 32.000 8.61 0.00 0.00 5.07
258 259 5.508200 AGAATTTACGCCAGTGACAAAAA 57.492 34.783 0.00 0.00 0.00 1.94
259 260 5.508200 AAGAATTTACGCCAGTGACAAAA 57.492 34.783 0.00 0.00 0.00 2.44
260 261 5.992829 TCTAAGAATTTACGCCAGTGACAAA 59.007 36.000 0.00 0.00 0.00 2.83
261 262 5.543714 TCTAAGAATTTACGCCAGTGACAA 58.456 37.500 0.00 0.00 0.00 3.18
262 263 5.142061 TCTAAGAATTTACGCCAGTGACA 57.858 39.130 0.00 0.00 0.00 3.58
263 264 6.476243 TTTCTAAGAATTTACGCCAGTGAC 57.524 37.500 0.00 0.00 0.00 3.67
264 265 7.174253 ACATTTTCTAAGAATTTACGCCAGTGA 59.826 33.333 0.00 0.00 0.00 3.41
265 266 7.305474 ACATTTTCTAAGAATTTACGCCAGTG 58.695 34.615 0.00 0.00 0.00 3.66
266 267 7.448748 ACATTTTCTAAGAATTTACGCCAGT 57.551 32.000 0.00 0.00 0.00 4.00
267 268 8.665685 AGTACATTTTCTAAGAATTTACGCCAG 58.334 33.333 0.00 0.00 29.43 4.85
268 269 8.447833 CAGTACATTTTCTAAGAATTTACGCCA 58.552 33.333 0.00 0.00 29.43 5.69
269 270 8.448615 ACAGTACATTTTCTAAGAATTTACGCC 58.551 33.333 0.00 0.00 29.43 5.68
284 285 9.855021 GGCTACAATGAATTTACAGTACATTTT 57.145 29.630 0.00 0.00 0.00 1.82
285 286 8.466798 GGGCTACAATGAATTTACAGTACATTT 58.533 33.333 0.00 0.00 0.00 2.32
286 287 7.201696 CGGGCTACAATGAATTTACAGTACATT 60.202 37.037 0.00 0.00 0.00 2.71
287 288 6.260050 CGGGCTACAATGAATTTACAGTACAT 59.740 38.462 0.00 0.00 0.00 2.29
309 310 1.087771 GGATTTACGCCAGTCACGGG 61.088 60.000 0.00 0.00 34.00 5.28
311 312 1.651987 ATGGATTTACGCCAGTCACG 58.348 50.000 0.00 0.00 39.11 4.35
327 328 7.877097 TGGAGGACAACAATTTATCAAAAATGG 59.123 33.333 0.00 0.00 31.02 3.16
329 330 8.869109 TCTGGAGGACAACAATTTATCAAAAAT 58.131 29.630 0.00 0.00 0.00 1.82
330 331 8.243961 TCTGGAGGACAACAATTTATCAAAAA 57.756 30.769 0.00 0.00 0.00 1.94
342 343 3.924114 TGAGTTTTCTGGAGGACAACA 57.076 42.857 0.00 0.00 37.16 3.33
343 344 5.763088 GAAATGAGTTTTCTGGAGGACAAC 58.237 41.667 0.00 0.00 40.54 3.32
366 367 3.126343 GTGGGCTTATCGGTGTACAAAAG 59.874 47.826 0.00 0.00 0.00 2.27
371 372 2.547826 GAAGTGGGCTTATCGGTGTAC 58.452 52.381 0.00 0.00 34.61 2.90
373 374 0.252197 GGAAGTGGGCTTATCGGTGT 59.748 55.000 0.00 0.00 34.61 4.16
398 402 0.447801 CGATCGGCCCAAAACTTCTG 59.552 55.000 7.38 0.00 0.00 3.02
399 403 0.323629 TCGATCGGCCCAAAACTTCT 59.676 50.000 16.41 0.00 0.00 2.85
453 457 3.141488 CCCGTCGGACCTCAGAGG 61.141 72.222 15.72 15.72 42.49 3.69
454 458 3.141488 CCCCGTCGGACCTCAGAG 61.141 72.222 14.39 0.00 0.00 3.35
455 459 3.975591 ACCCCGTCGGACCTCAGA 61.976 66.667 14.39 0.00 34.64 3.27
456 460 3.760035 CACCCCGTCGGACCTCAG 61.760 72.222 14.39 0.00 34.64 3.35
491 495 1.969064 CGCCATTCCCCACGTTTGA 60.969 57.895 0.00 0.00 0.00 2.69
520 539 2.798675 CGCCGAGATCGAGATGCG 60.799 66.667 3.31 6.51 43.02 4.73
521 540 2.429907 CCGCCGAGATCGAGATGC 60.430 66.667 3.31 0.00 43.02 3.91
927 955 3.995199 TGAAGAAGATGTTGAAGACGCT 58.005 40.909 0.00 0.00 0.00 5.07
1099 3869 4.208686 GGCGACCAGGCTACGGAG 62.209 72.222 0.00 0.00 42.90 4.63
1199 3969 2.125912 CAACGGTGAGGCTCCTCG 60.126 66.667 19.98 19.98 45.48 4.63
1219 3989 3.041940 GGTGTCCGAACCGCACTG 61.042 66.667 0.00 0.00 33.96 3.66
1485 4312 8.247562 AGACAGTAACTGAGTATTGAGATCAAC 58.752 37.037 0.00 0.00 35.54 3.18
1514 4349 6.371548 AGCATAGCAACGAAGAAAGTTATCAA 59.628 34.615 0.00 0.00 0.00 2.57
1522 4357 3.004210 TGCAAAGCATAGCAACGAAGAAA 59.996 39.130 0.00 0.00 37.90 2.52
1558 4393 0.037232 ACTAACCTGGCACGAGCTTC 60.037 55.000 4.48 0.00 41.70 3.86
1642 4477 2.993220 CGTTCATGTTGTCGATCTCCAA 59.007 45.455 0.00 0.00 0.00 3.53
1673 4508 0.249911 ACAGCAGGTCACGAGGAAAC 60.250 55.000 0.00 0.00 0.00 2.78
1731 4566 5.756195 TGCAATGGAATATACAACAGCTC 57.244 39.130 0.00 0.00 0.00 4.09
1753 4588 5.008613 AGTGTACGCAAACAAAAGTCATCAT 59.991 36.000 9.48 0.00 0.00 2.45
1773 4608 8.784043 GTCATAAGGTGATTTCTTTAACAGTGT 58.216 33.333 0.00 0.00 39.48 3.55
1789 4676 6.406370 TGAATACAGTCAAGGTCATAAGGTG 58.594 40.000 0.00 0.00 0.00 4.00
1790 4677 6.440647 TCTGAATACAGTCAAGGTCATAAGGT 59.559 38.462 0.00 0.00 43.81 3.50
1815 4705 7.829211 ACCAAGCAACAATACAATGACTACTAT 59.171 33.333 0.00 0.00 0.00 2.12
1893 4792 9.197306 TCTGGCTTATCTTGATAACTACTTGTA 57.803 33.333 0.00 0.00 0.00 2.41
1909 4808 3.845781 TGGTTCATCCTCTGGCTTATC 57.154 47.619 0.00 0.00 37.07 1.75
1951 4850 0.908198 AGCTCTTCCACTGACCCATC 59.092 55.000 0.00 0.00 0.00 3.51
1987 4886 6.323225 TGTTCATCTAGCTCATCTTCATCTGA 59.677 38.462 0.00 0.00 0.00 3.27
1989 4888 6.324512 AGTGTTCATCTAGCTCATCTTCATCT 59.675 38.462 0.00 0.00 0.00 2.90
1992 4891 5.929058 AGTGTTCATCTAGCTCATCTTCA 57.071 39.130 0.00 0.00 0.00 3.02
2011 4910 5.220931 CCAGTGTTTCTCCTTCTGAAAAGTG 60.221 44.000 0.00 0.00 35.54 3.16
2016 4915 3.967326 TCTCCAGTGTTTCTCCTTCTGAA 59.033 43.478 0.00 0.00 0.00 3.02
2080 4979 0.823460 CCCTCTGACAGCTCTTCCTC 59.177 60.000 0.00 0.00 0.00 3.71
2081 4980 0.411452 TCCCTCTGACAGCTCTTCCT 59.589 55.000 0.00 0.00 0.00 3.36
2082 4981 0.823460 CTCCCTCTGACAGCTCTTCC 59.177 60.000 0.00 0.00 0.00 3.46
2083 4982 1.846007 TCTCCCTCTGACAGCTCTTC 58.154 55.000 0.00 0.00 0.00 2.87
2084 4983 2.109774 CATCTCCCTCTGACAGCTCTT 58.890 52.381 0.00 0.00 0.00 2.85
2085 4984 1.287442 TCATCTCCCTCTGACAGCTCT 59.713 52.381 0.00 0.00 0.00 4.09
2086 4985 1.682854 CTCATCTCCCTCTGACAGCTC 59.317 57.143 0.00 0.00 0.00 4.09
2087 4986 1.779221 CTCATCTCCCTCTGACAGCT 58.221 55.000 0.00 0.00 0.00 4.24
2088 4987 0.104671 GCTCATCTCCCTCTGACAGC 59.895 60.000 0.00 0.00 0.00 4.40
2089 4988 1.779221 AGCTCATCTCCCTCTGACAG 58.221 55.000 0.00 0.00 0.00 3.51
2090 4989 2.511637 TCTAGCTCATCTCCCTCTGACA 59.488 50.000 0.00 0.00 0.00 3.58
2091 4990 3.149196 CTCTAGCTCATCTCCCTCTGAC 58.851 54.545 0.00 0.00 0.00 3.51
2092 4991 2.108075 CCTCTAGCTCATCTCCCTCTGA 59.892 54.545 0.00 0.00 0.00 3.27
2093 4992 2.108075 TCCTCTAGCTCATCTCCCTCTG 59.892 54.545 0.00 0.00 0.00 3.35
2094 4993 2.427872 TCCTCTAGCTCATCTCCCTCT 58.572 52.381 0.00 0.00 0.00 3.69
2099 4998 3.254166 CAGCTCTTCCTCTAGCTCATCTC 59.746 52.174 0.00 0.00 45.92 2.75
2153 5052 1.555075 CCTCGAGTTCAATTCCCTCCA 59.445 52.381 12.31 0.00 0.00 3.86
2154 5053 1.831736 TCCTCGAGTTCAATTCCCTCC 59.168 52.381 12.31 0.00 0.00 4.30
2290 5267 2.053865 CATTGTGGCGCCCCTTGAT 61.054 57.895 26.77 8.04 0.00 2.57
2346 5323 5.552870 ACAGTATCAGTTGGTTGAGACTT 57.447 39.130 0.94 0.00 44.74 3.01
2436 5413 4.377839 TCTGAGAGGCGATAGTTTTCTG 57.622 45.455 0.00 0.00 39.35 3.02
2597 7586 5.179452 TCTTTGCCTTGCCTAATAGTTCT 57.821 39.130 0.00 0.00 0.00 3.01
2598 7587 5.183140 TGTTCTTTGCCTTGCCTAATAGTTC 59.817 40.000 0.00 0.00 0.00 3.01
2667 10764 6.820152 TCAGACAACATACTCAATGATCCTTG 59.180 38.462 4.48 4.48 39.07 3.61
2677 10774 8.809468 AGTATAAGTCTCAGACAACATACTCA 57.191 34.615 7.77 0.00 32.75 3.41
2686 10783 5.171476 GCTGCAAAGTATAAGTCTCAGACA 58.829 41.667 7.77 0.00 34.60 3.41
2692 10789 6.301169 AGTTAGGCTGCAAAGTATAAGTCT 57.699 37.500 0.50 0.00 0.00 3.24
2694 10791 5.189934 AGGAGTTAGGCTGCAAAGTATAAGT 59.810 40.000 0.50 0.00 38.09 2.24
2802 10919 0.683973 CCTGTCACCAAGTCTCAGCT 59.316 55.000 0.00 0.00 0.00 4.24
2817 10936 8.211629 ACTCTTGTTCTTGTAATACTTTCCTGT 58.788 33.333 0.00 0.00 0.00 4.00
2818 10937 8.499162 CACTCTTGTTCTTGTAATACTTTCCTG 58.501 37.037 0.00 0.00 0.00 3.86
2819 10938 7.173390 GCACTCTTGTTCTTGTAATACTTTCCT 59.827 37.037 0.00 0.00 0.00 3.36
2820 10939 7.173390 AGCACTCTTGTTCTTGTAATACTTTCC 59.827 37.037 0.00 0.00 0.00 3.13
2821 10940 8.089115 AGCACTCTTGTTCTTGTAATACTTTC 57.911 34.615 0.00 0.00 0.00 2.62
2822 10941 8.451908 AAGCACTCTTGTTCTTGTAATACTTT 57.548 30.769 0.00 0.00 29.00 2.66
2824 10943 9.555727 TTAAAGCACTCTTGTTCTTGTAATACT 57.444 29.630 0.00 0.00 30.52 2.12
2827 10946 9.066892 TGATTAAAGCACTCTTGTTCTTGTAAT 57.933 29.630 0.00 0.00 30.52 1.89
2829 10948 7.307989 GCTGATTAAAGCACTCTTGTTCTTGTA 60.308 37.037 0.00 0.00 43.01 2.41
2832 10951 5.048434 GGCTGATTAAAGCACTCTTGTTCTT 60.048 40.000 1.77 0.00 45.43 2.52
2835 10968 3.189287 CGGCTGATTAAAGCACTCTTGTT 59.811 43.478 1.77 0.00 45.43 2.83
2960 11104 8.280909 CATGTTACTGTACATGTTTTGGTTTC 57.719 34.615 2.30 0.00 46.53 2.78
2982 11126 8.960591 AGGATTTATACTTGTTGAAACTCCATG 58.039 33.333 0.00 0.00 0.00 3.66
2997 11141 6.068670 GGGTATGTTTGCCAGGATTTATACT 58.931 40.000 0.00 0.00 0.00 2.12
3060 11207 5.924786 CAGACAAGTCAACATCTGCTAAAG 58.075 41.667 2.72 0.00 32.76 1.85
3135 11301 2.171448 GAGGATTACACCAGTGGCAGAT 59.829 50.000 9.78 0.00 34.19 2.90
3136 11302 1.555075 GAGGATTACACCAGTGGCAGA 59.445 52.381 9.78 0.00 34.19 4.26
3183 11351 2.784347 AGAACTAAAAGTGGCAGCCTC 58.216 47.619 14.15 9.57 0.00 4.70
3186 11354 4.044426 CACAAAGAACTAAAAGTGGCAGC 58.956 43.478 0.00 0.00 0.00 5.25
3208 11376 2.791383 TTTACAGCACAACACATGCC 57.209 45.000 0.00 0.00 44.53 4.40
3249 11417 4.677182 AGCCACAAATTCCCTGAGTTATT 58.323 39.130 0.00 0.00 0.00 1.40
3272 11442 0.668535 CATGGCATGATGCTGTCAGG 59.331 55.000 22.91 4.92 44.28 3.86
3285 11455 2.230992 GGTAAGCAAACATGACATGGCA 59.769 45.455 19.39 2.18 33.60 4.92
3330 11502 8.781196 GGCCAGATAATATACTCGACGATAATA 58.219 37.037 0.00 0.00 0.00 0.98
3331 11503 7.255520 GGGCCAGATAATATACTCGACGATAAT 60.256 40.741 4.39 0.00 0.00 1.28
3332 11504 6.039047 GGGCCAGATAATATACTCGACGATAA 59.961 42.308 4.39 0.00 0.00 1.75
3333 11505 5.530171 GGGCCAGATAATATACTCGACGATA 59.470 44.000 4.39 0.00 0.00 2.92
3334 11506 4.338682 GGGCCAGATAATATACTCGACGAT 59.661 45.833 4.39 0.00 0.00 3.73
3336 11508 3.695060 AGGGCCAGATAATATACTCGACG 59.305 47.826 6.18 0.00 0.00 5.12
3339 11511 6.525578 TGTAAGGGCCAGATAATATACTCG 57.474 41.667 6.18 0.00 0.00 4.18
3355 11685 6.349363 GGAGTTTAAAGTGCAGAATGTAAGGG 60.349 42.308 9.46 0.00 39.31 3.95
3361 11691 8.733857 CTTTAAGGAGTTTAAAGTGCAGAATG 57.266 34.615 15.85 8.08 46.89 2.67
3439 11769 1.654105 GTTCGTTCATAGCAGACACCG 59.346 52.381 0.00 0.00 0.00 4.94
3461 11791 3.726436 GCTGTCGCGCTGAATTATAATC 58.274 45.455 5.56 0.00 0.00 1.75
3495 11825 6.544931 TGCTACACTACTCCTGTATTCGTAAT 59.455 38.462 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.