Multiple sequence alignment - TraesCS7D01G438400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G438400 chr7D 100.000 2561 0 0 1 2561 557777998 557780558 0.000000e+00 4730.0
1 TraesCS7D01G438400 chr7D 87.229 830 79 14 1 804 124020477 124019649 0.000000e+00 920.0
2 TraesCS7D01G438400 chr7D 87.337 766 70 14 64 803 562820009 562820773 0.000000e+00 852.0
3 TraesCS7D01G438400 chr7D 79.954 873 87 47 831 1662 557348490 557347665 1.720000e-156 562.0
4 TraesCS7D01G438400 chr7D 91.622 370 29 1 2136 2503 557347485 557347116 6.320000e-141 510.0
5 TraesCS7D01G438400 chr7D 92.553 282 5 1 1660 1925 567665189 567664908 8.590000e-105 390.0
6 TraesCS7D01G438400 chr7D 92.527 281 5 1 1662 1926 95056391 95056111 3.090000e-104 388.0
7 TraesCS7D01G438400 chr7D 88.144 194 6 4 1918 2101 557347672 557347486 5.550000e-52 215.0
8 TraesCS7D01G438400 chr3B 89.410 831 62 9 1 806 396731683 396732512 0.000000e+00 1024.0
9 TraesCS7D01G438400 chr4B 89.385 829 63 11 1 804 490649639 490648811 0.000000e+00 1020.0
10 TraesCS7D01G438400 chr3D 89.398 830 60 11 1 804 516858947 516859774 0.000000e+00 1020.0
11 TraesCS7D01G438400 chr6D 88.429 821 76 7 1 803 456645141 456644322 0.000000e+00 972.0
12 TraesCS7D01G438400 chr6D 88.420 829 59 12 1 804 24020884 24021700 0.000000e+00 965.0
13 TraesCS7D01G438400 chr6D 87.952 830 74 5 1 804 453368026 453368855 0.000000e+00 955.0
14 TraesCS7D01G438400 chr5D 87.515 841 67 21 1 804 475518134 475518973 0.000000e+00 937.0
15 TraesCS7D01G438400 chr5D 91.409 291 6 4 1651 1923 284119409 284119698 5.170000e-102 381.0
16 TraesCS7D01G438400 chr2D 87.349 830 79 5 1 804 448192139 448192968 0.000000e+00 928.0
17 TraesCS7D01G438400 chr2D 86.364 88 8 4 1119 1204 618132590 618132675 2.710000e-15 93.5
18 TraesCS7D01G438400 chr2A 86.571 834 82 10 1 806 149422410 149421579 0.000000e+00 893.0
19 TraesCS7D01G438400 chr2A 86.331 834 84 10 1 808 154122949 154122120 0.000000e+00 881.0
20 TraesCS7D01G438400 chr2A 86.833 281 10 6 1659 1923 527696200 527696469 3.220000e-74 289.0
21 TraesCS7D01G438400 chr1A 87.206 766 59 14 64 804 557420667 557419916 0.000000e+00 835.0
22 TraesCS7D01G438400 chr1A 90.647 278 9 5 1662 1923 460600647 460600371 1.130000e-93 353.0
23 TraesCS7D01G438400 chr1A 89.286 280 14 2 1663 1926 531873720 531873441 1.140000e-88 337.0
24 TraesCS7D01G438400 chr7B 88.871 638 64 5 1918 2554 605072138 605071507 0.000000e+00 778.0
25 TraesCS7D01G438400 chr7B 88.850 287 17 7 1377 1661 605072405 605072132 3.160000e-89 339.0
26 TraesCS7D01G438400 chr7B 92.797 236 10 4 824 1054 605877932 605878165 4.080000e-88 335.0
27 TraesCS7D01G438400 chr7B 84.783 322 31 3 1066 1369 605872246 605872567 8.900000e-80 307.0
28 TraesCS7D01G438400 chr7B 82.659 346 28 11 887 1223 605112419 605112097 6.980000e-71 278.0
29 TraesCS7D01G438400 chr7B 87.603 121 10 5 1280 1395 605111130 605111010 4.440000e-28 135.0
30 TraesCS7D01G438400 chr7A 85.614 570 27 22 824 1369 643298054 643298592 4.820000e-152 547.0
31 TraesCS7D01G438400 chr7A 83.066 561 51 24 831 1374 642903470 642902937 1.070000e-128 470.0
32 TraesCS7D01G438400 chr7A 83.082 331 37 10 1066 1379 643242726 643243054 1.500000e-72 283.0
33 TraesCS7D01G438400 chr7A 86.331 278 8 5 1662 1923 161987671 161987408 2.510000e-70 276.0
34 TraesCS7D01G438400 chr7A 86.792 159 15 6 1473 1627 642902850 642902694 3.390000e-39 172.0
35 TraesCS7D01G438400 chrUn 81.552 683 63 34 843 1508 86734031 86733395 2.940000e-139 505.0
36 TraesCS7D01G438400 chr5A 85.446 426 43 2 385 804 30785568 30785980 2.360000e-115 425.0
37 TraesCS7D01G438400 chr5A 87.544 281 14 7 1659 1923 480804584 480804859 3.200000e-79 305.0
38 TraesCS7D01G438400 chr4D 92.982 285 3 2 1655 1923 24338683 24338400 1.430000e-107 399.0
39 TraesCS7D01G438400 chr4D 92.086 278 6 1 1662 1923 280787988 280788265 6.690000e-101 377.0
40 TraesCS7D01G438400 chr1D 93.165 278 3 1 1662 1923 322163814 322164091 6.640000e-106 394.0
41 TraesCS7D01G438400 chr1D 86.477 281 22 6 1662 1927 267596783 267596504 6.930000e-76 294.0
42 TraesCS7D01G438400 chr5B 82.310 277 24 13 1662 1922 350711315 350711582 1.540000e-52 217.0
43 TraesCS7D01G438400 chr6B 87.151 179 23 0 626 804 36470247 36470425 1.200000e-48 204.0
44 TraesCS7D01G438400 chr3A 84.492 187 29 0 626 812 625235798 625235984 4.350000e-43 185.0
45 TraesCS7D01G438400 chr2B 85.542 83 10 2 1118 1199 753950077 753950158 4.540000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G438400 chr7D 557777998 557780558 2560 False 4730.0 4730 100.000000 1 2561 1 chr7D.!!$F1 2560
1 TraesCS7D01G438400 chr7D 124019649 124020477 828 True 920.0 920 87.229000 1 804 1 chr7D.!!$R2 803
2 TraesCS7D01G438400 chr7D 562820009 562820773 764 False 852.0 852 87.337000 64 803 1 chr7D.!!$F2 739
3 TraesCS7D01G438400 chr7D 557347116 557348490 1374 True 429.0 562 86.573333 831 2503 3 chr7D.!!$R4 1672
4 TraesCS7D01G438400 chr3B 396731683 396732512 829 False 1024.0 1024 89.410000 1 806 1 chr3B.!!$F1 805
5 TraesCS7D01G438400 chr4B 490648811 490649639 828 True 1020.0 1020 89.385000 1 804 1 chr4B.!!$R1 803
6 TraesCS7D01G438400 chr3D 516858947 516859774 827 False 1020.0 1020 89.398000 1 804 1 chr3D.!!$F1 803
7 TraesCS7D01G438400 chr6D 456644322 456645141 819 True 972.0 972 88.429000 1 803 1 chr6D.!!$R1 802
8 TraesCS7D01G438400 chr6D 24020884 24021700 816 False 965.0 965 88.420000 1 804 1 chr6D.!!$F1 803
9 TraesCS7D01G438400 chr6D 453368026 453368855 829 False 955.0 955 87.952000 1 804 1 chr6D.!!$F2 803
10 TraesCS7D01G438400 chr5D 475518134 475518973 839 False 937.0 937 87.515000 1 804 1 chr5D.!!$F2 803
11 TraesCS7D01G438400 chr2D 448192139 448192968 829 False 928.0 928 87.349000 1 804 1 chr2D.!!$F1 803
12 TraesCS7D01G438400 chr2A 149421579 149422410 831 True 893.0 893 86.571000 1 806 1 chr2A.!!$R1 805
13 TraesCS7D01G438400 chr2A 154122120 154122949 829 True 881.0 881 86.331000 1 808 1 chr2A.!!$R2 807
14 TraesCS7D01G438400 chr1A 557419916 557420667 751 True 835.0 835 87.206000 64 804 1 chr1A.!!$R3 740
15 TraesCS7D01G438400 chr7B 605071507 605072405 898 True 558.5 778 88.860500 1377 2554 2 chr7B.!!$R1 1177
16 TraesCS7D01G438400 chr7B 605111010 605112419 1409 True 206.5 278 85.131000 887 1395 2 chr7B.!!$R2 508
17 TraesCS7D01G438400 chr7A 643298054 643298592 538 False 547.0 547 85.614000 824 1369 1 chr7A.!!$F2 545
18 TraesCS7D01G438400 chr7A 642902694 642903470 776 True 321.0 470 84.929000 831 1627 2 chr7A.!!$R2 796
19 TraesCS7D01G438400 chrUn 86733395 86734031 636 True 505.0 505 81.552000 843 1508 1 chrUn.!!$R1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
821 873 0.600557 ACACTCTTGAGTGAGCGAGG 59.399 55.0 30.2 8.65 42.02 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 2825 0.034756 CGATGACAGGGTTGACACCA 59.965 55.0 0.0 0.0 46.43 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 114 0.734253 CAGCGTCAGTGCAGTAGGAC 60.734 60.000 0.00 0.00 37.31 3.85
246 260 1.098869 GACAGAGGAGCTCGACATGA 58.901 55.000 7.83 0.00 35.36 3.07
250 264 1.658686 GAGGAGCTCGACATGACGGT 61.659 60.000 17.11 3.01 0.00 4.83
251 265 1.226717 GGAGCTCGACATGACGGTC 60.227 63.158 17.11 11.22 34.42 4.79
281 295 3.768757 AGTAGACTGCTGCTCAAAGAGAT 59.231 43.478 0.00 0.00 30.72 2.75
283 297 4.389890 AGACTGCTGCTCAAAGAGATAG 57.610 45.455 0.00 0.00 0.00 2.08
291 305 5.221621 GCTGCTCAAAGAGATAGGGAGTTAT 60.222 44.000 0.00 0.00 0.00 1.89
573 606 6.047359 AGGGAGGAGATTAGATAGGAGCTTAA 59.953 42.308 0.00 0.00 0.00 1.85
661 713 1.507141 CCTGGCTCGCGAAAAACTGT 61.507 55.000 11.33 0.00 0.00 3.55
662 714 1.144969 CTGGCTCGCGAAAAACTGTA 58.855 50.000 11.33 0.00 0.00 2.74
668 720 4.464112 GCTCGCGAAAAACTGTAGATTTT 58.536 39.130 11.33 0.29 33.60 1.82
739 791 3.876156 GCAGGCCCAATAGTAAAACCAGA 60.876 47.826 0.00 0.00 0.00 3.86
749 801 4.994907 AGTAAAACCAGACAACCAAACC 57.005 40.909 0.00 0.00 0.00 3.27
753 805 1.826054 CCAGACAACCAAACCGGCA 60.826 57.895 0.00 0.00 39.03 5.69
810 862 2.208326 GGCAACCAAACACACTCTTG 57.792 50.000 0.00 0.00 0.00 3.02
811 863 1.748493 GGCAACCAAACACACTCTTGA 59.252 47.619 0.00 0.00 0.00 3.02
812 864 2.223572 GGCAACCAAACACACTCTTGAG 60.224 50.000 0.00 0.00 0.00 3.02
813 865 2.423538 GCAACCAAACACACTCTTGAGT 59.576 45.455 0.00 0.00 0.00 3.41
814 866 3.731867 GCAACCAAACACACTCTTGAGTG 60.732 47.826 24.17 24.17 44.74 3.51
815 867 3.627395 ACCAAACACACTCTTGAGTGA 57.373 42.857 30.20 0.00 42.02 3.41
816 868 3.535561 ACCAAACACACTCTTGAGTGAG 58.464 45.455 30.20 25.34 42.02 3.51
817 869 2.289002 CCAAACACACTCTTGAGTGAGC 59.711 50.000 30.20 0.00 42.02 4.26
818 870 1.858091 AACACACTCTTGAGTGAGCG 58.142 50.000 30.20 20.96 42.02 5.03
819 871 1.032794 ACACACTCTTGAGTGAGCGA 58.967 50.000 30.20 0.00 42.02 4.93
820 872 1.000827 ACACACTCTTGAGTGAGCGAG 60.001 52.381 30.20 18.07 42.02 5.03
821 873 0.600557 ACACTCTTGAGTGAGCGAGG 59.399 55.000 30.20 8.65 42.02 4.63
822 874 0.600557 CACTCTTGAGTGAGCGAGGT 59.399 55.000 22.18 0.00 42.02 3.85
825 877 1.216710 CTTGAGTGAGCGAGGTCCC 59.783 63.158 0.00 0.00 0.00 4.46
895 950 0.739561 GGTCTGTAGTCTACTGGCCG 59.260 60.000 20.74 0.00 41.46 6.13
994 1064 4.135153 CCCCTGCTCGTCGGTGAG 62.135 72.222 0.00 1.05 39.05 3.51
995 1065 3.062466 CCCTGCTCGTCGGTGAGA 61.062 66.667 8.72 0.00 38.28 3.27
1031 1117 0.882042 ACCAGAGCACACAAGAAGCG 60.882 55.000 0.00 0.00 0.00 4.68
1047 1133 0.104304 AGCGAACAACCGAGTTCAGT 59.896 50.000 13.22 0.67 46.32 3.41
1048 1134 0.935196 GCGAACAACCGAGTTCAGTT 59.065 50.000 13.22 4.87 46.32 3.16
1049 1135 1.329599 GCGAACAACCGAGTTCAGTTT 59.670 47.619 13.22 0.00 46.32 2.66
1050 1136 2.599142 GCGAACAACCGAGTTCAGTTTC 60.599 50.000 13.22 3.29 46.32 2.78
1051 1137 2.033151 CGAACAACCGAGTTCAGTTTCC 60.033 50.000 13.22 0.00 46.32 3.13
1053 1139 0.865769 CAACCGAGTTCAGTTTCCCG 59.134 55.000 0.00 0.00 0.00 5.14
1054 1140 0.883370 AACCGAGTTCAGTTTCCCGC 60.883 55.000 0.00 0.00 0.00 6.13
1055 1141 2.380410 CCGAGTTCAGTTTCCCGCG 61.380 63.158 0.00 0.00 0.00 6.46
1072 1174 3.948719 GGGCACAACCTCCACCGA 61.949 66.667 0.00 0.00 39.10 4.69
1132 1234 2.172483 GAGTGTCGATGGTGGTGGCT 62.172 60.000 0.00 0.00 0.00 4.75
1271 1382 0.998945 CCTCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1272 1383 0.478507 CTCTCCTCCTCCTCCTCCTC 59.521 65.000 0.00 0.00 0.00 3.71
1274 1385 2.015726 TCCTCCTCCTCCTCCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
1275 1386 2.328589 CCTCCTCCTCCTCCTCCCA 61.329 68.421 0.00 0.00 0.00 4.37
1348 2384 0.034337 ACAAGGCGTACCACATCGTT 59.966 50.000 0.00 0.00 39.06 3.85
1357 2393 2.342650 CCACATCGTTTGCTGGGGG 61.343 63.158 0.00 0.00 30.86 5.40
1360 2396 3.978193 ATCGTTTGCTGGGGGCCA 61.978 61.111 4.39 0.00 40.92 5.36
1375 2434 2.492088 GGGGCCAAACTGATTGTCTAAC 59.508 50.000 4.39 0.00 37.32 2.34
1612 2694 2.608268 GAACAACTACCTCTTCGCTCC 58.392 52.381 0.00 0.00 0.00 4.70
1614 2696 2.249139 ACAACTACCTCTTCGCTCCTT 58.751 47.619 0.00 0.00 0.00 3.36
1628 2710 3.706594 TCGCTCCTTGATCTTACCAATCT 59.293 43.478 0.00 0.00 0.00 2.40
1629 2711 4.893524 TCGCTCCTTGATCTTACCAATCTA 59.106 41.667 0.00 0.00 0.00 1.98
1630 2712 5.540337 TCGCTCCTTGATCTTACCAATCTAT 59.460 40.000 0.00 0.00 0.00 1.98
1631 2713 6.042093 TCGCTCCTTGATCTTACCAATCTATT 59.958 38.462 0.00 0.00 0.00 1.73
1632 2714 6.367422 CGCTCCTTGATCTTACCAATCTATTC 59.633 42.308 0.00 0.00 0.00 1.75
1662 2746 2.408271 TTAAGGCATGGTGCTCTGAG 57.592 50.000 0.00 0.00 44.28 3.35
1663 2747 0.543277 TAAGGCATGGTGCTCTGAGG 59.457 55.000 6.83 0.00 44.28 3.86
1664 2748 2.124403 GGCATGGTGCTCTGAGGG 60.124 66.667 6.83 0.00 44.28 4.30
1665 2749 2.827642 GCATGGTGCTCTGAGGGC 60.828 66.667 0.00 0.00 40.96 5.19
1666 2750 2.672908 CATGGTGCTCTGAGGGCA 59.327 61.111 1.09 1.09 37.36 5.36
1667 2751 1.226542 CATGGTGCTCTGAGGGCAT 59.773 57.895 11.51 0.00 41.86 4.40
1668 2752 0.818445 CATGGTGCTCTGAGGGCATC 60.818 60.000 11.51 11.47 41.86 3.91
1669 2753 0.987081 ATGGTGCTCTGAGGGCATCT 60.987 55.000 19.64 1.18 40.99 2.90
1670 2754 1.145819 GGTGCTCTGAGGGCATCTC 59.854 63.158 11.51 0.00 41.86 2.75
1671 2755 1.145819 GTGCTCTGAGGGCATCTCC 59.854 63.158 11.51 0.00 41.76 3.71
1672 2756 1.306397 TGCTCTGAGGGCATCTCCA 60.306 57.895 1.09 0.00 41.76 3.86
1673 2757 0.693430 TGCTCTGAGGGCATCTCCAT 60.693 55.000 1.09 0.00 41.76 3.41
1674 2758 0.473326 GCTCTGAGGGCATCTCCATT 59.527 55.000 0.00 0.00 41.76 3.16
1675 2759 1.814634 GCTCTGAGGGCATCTCCATTG 60.815 57.143 0.00 0.00 41.76 2.82
1676 2760 0.182061 TCTGAGGGCATCTCCATTGC 59.818 55.000 0.00 0.00 41.76 3.56
1677 2761 0.183014 CTGAGGGCATCTCCATTGCT 59.817 55.000 0.00 0.00 41.76 3.91
1678 2762 0.106868 TGAGGGCATCTCCATTGCTG 60.107 55.000 0.00 0.00 41.76 4.41
1679 2763 0.822532 GAGGGCATCTCCATTGCTGG 60.823 60.000 0.00 0.00 44.64 4.85
1680 2764 1.831286 GGGCATCTCCATTGCTGGG 60.831 63.158 0.00 0.00 43.34 4.45
1681 2765 2.496291 GGCATCTCCATTGCTGGGC 61.496 63.158 0.00 0.00 43.34 5.36
1682 2766 2.842256 GCATCTCCATTGCTGGGCG 61.842 63.158 0.00 0.00 43.34 6.13
1683 2767 2.517875 ATCTCCATTGCTGGGCGC 60.518 61.111 0.00 0.00 43.34 6.53
1684 2768 3.052909 ATCTCCATTGCTGGGCGCT 62.053 57.895 7.64 0.00 43.34 5.92
1685 2769 2.563013 ATCTCCATTGCTGGGCGCTT 62.563 55.000 7.64 0.00 43.34 4.68
1686 2770 1.451927 CTCCATTGCTGGGCGCTTA 60.452 57.895 7.64 0.00 43.34 3.09
1687 2771 1.442526 CTCCATTGCTGGGCGCTTAG 61.443 60.000 7.64 7.26 43.34 2.18
1688 2772 2.484062 CCATTGCTGGGCGCTTAGG 61.484 63.158 7.64 0.00 39.04 2.69
1689 2773 2.830370 ATTGCTGGGCGCTTAGGC 60.830 61.111 7.64 7.79 45.91 3.93
1706 2790 4.077184 CCAGGCGCCAGGTTCGTA 62.077 66.667 31.54 0.00 0.00 3.43
1707 2791 2.047655 CAGGCGCCAGGTTCGTAA 60.048 61.111 31.54 0.00 0.00 3.18
1708 2792 1.449601 CAGGCGCCAGGTTCGTAAT 60.450 57.895 31.54 0.00 0.00 1.89
1709 2793 1.153429 AGGCGCCAGGTTCGTAATC 60.153 57.895 31.54 0.00 0.00 1.75
1710 2794 2.178235 GGCGCCAGGTTCGTAATCC 61.178 63.158 24.80 0.00 0.00 3.01
1711 2795 2.178235 GCGCCAGGTTCGTAATCCC 61.178 63.158 0.00 0.00 0.00 3.85
1712 2796 1.881252 CGCCAGGTTCGTAATCCCG 60.881 63.158 0.00 0.00 0.00 5.14
1713 2797 1.523032 GCCAGGTTCGTAATCCCGG 60.523 63.158 0.00 0.00 0.00 5.73
1714 2798 1.523032 CCAGGTTCGTAATCCCGGC 60.523 63.158 0.00 0.00 0.00 6.13
1715 2799 1.219664 CAGGTTCGTAATCCCGGCA 59.780 57.895 0.00 0.00 0.00 5.69
1716 2800 0.810031 CAGGTTCGTAATCCCGGCAG 60.810 60.000 0.00 0.00 0.00 4.85
1717 2801 0.974010 AGGTTCGTAATCCCGGCAGA 60.974 55.000 0.00 0.00 0.00 4.26
1718 2802 0.106149 GGTTCGTAATCCCGGCAGAT 59.894 55.000 0.00 0.00 0.00 2.90
1719 2803 1.474498 GGTTCGTAATCCCGGCAGATT 60.474 52.381 10.32 10.32 39.73 2.40
1720 2804 2.224113 GGTTCGTAATCCCGGCAGATTA 60.224 50.000 8.57 8.57 37.62 1.75
1721 2805 3.057734 GTTCGTAATCCCGGCAGATTAG 58.942 50.000 11.98 7.88 38.95 1.73
1722 2806 1.000506 TCGTAATCCCGGCAGATTAGC 59.999 52.381 11.98 7.67 38.95 3.09
1723 2807 1.429463 GTAATCCCGGCAGATTAGCG 58.571 55.000 11.98 0.00 38.95 4.26
1724 2808 0.320374 TAATCCCGGCAGATTAGCGG 59.680 55.000 8.57 0.00 37.62 5.52
1725 2809 1.696097 AATCCCGGCAGATTAGCGGT 61.696 55.000 4.31 0.00 34.69 5.68
1726 2810 1.696097 ATCCCGGCAGATTAGCGGTT 61.696 55.000 0.00 0.00 33.50 4.44
1727 2811 2.180204 CCCGGCAGATTAGCGGTTG 61.180 63.158 0.00 0.00 33.50 3.77
1728 2812 2.709475 CGGCAGATTAGCGGTTGC 59.291 61.111 0.00 0.00 43.24 4.17
1739 2823 3.493213 CGGTTGCCGGGTGTAATC 58.507 61.111 2.18 0.00 44.15 1.75
1740 2824 2.110352 CGGTTGCCGGGTGTAATCC 61.110 63.158 2.18 0.00 44.15 3.01
1741 2825 1.301954 GGTTGCCGGGTGTAATCCT 59.698 57.895 2.18 0.00 0.00 3.24
1742 2826 1.029947 GGTTGCCGGGTGTAATCCTG 61.030 60.000 2.18 0.00 0.00 3.86
1745 2829 4.954933 CCGGGTGTAATCCTGGTG 57.045 61.111 0.00 0.00 46.12 4.17
1746 2830 1.988015 CCGGGTGTAATCCTGGTGT 59.012 57.895 0.00 0.00 46.12 4.16
1747 2831 0.107848 CCGGGTGTAATCCTGGTGTC 60.108 60.000 0.00 0.00 46.12 3.67
1748 2832 0.611200 CGGGTGTAATCCTGGTGTCA 59.389 55.000 0.00 0.00 0.00 3.58
1749 2833 1.002659 CGGGTGTAATCCTGGTGTCAA 59.997 52.381 0.00 0.00 0.00 3.18
1750 2834 2.433436 GGGTGTAATCCTGGTGTCAAC 58.567 52.381 0.00 0.00 0.00 3.18
1760 2844 2.840974 GGTGTCAACCCTGTCATCG 58.159 57.895 0.00 0.00 41.04 3.84
1761 2845 0.320374 GGTGTCAACCCTGTCATCGA 59.680 55.000 0.00 0.00 41.04 3.59
1762 2846 1.429463 GTGTCAACCCTGTCATCGAC 58.571 55.000 0.00 0.00 0.00 4.20
1763 2847 0.038618 TGTCAACCCTGTCATCGACG 60.039 55.000 0.00 0.00 34.95 5.12
1764 2848 1.080093 TCAACCCTGTCATCGACGC 60.080 57.895 0.00 0.00 34.95 5.19
1765 2849 2.100631 CAACCCTGTCATCGACGCC 61.101 63.158 0.00 0.00 34.95 5.68
1766 2850 2.579657 AACCCTGTCATCGACGCCA 61.580 57.895 0.00 0.00 34.95 5.69
1767 2851 2.107041 AACCCTGTCATCGACGCCAA 62.107 55.000 0.00 0.00 34.95 4.52
1768 2852 1.375396 CCCTGTCATCGACGCCAAA 60.375 57.895 0.00 0.00 34.95 3.28
1769 2853 1.635663 CCCTGTCATCGACGCCAAAC 61.636 60.000 0.00 0.00 34.95 2.93
1770 2854 1.635663 CCTGTCATCGACGCCAAACC 61.636 60.000 0.00 0.00 34.95 3.27
1771 2855 0.948623 CTGTCATCGACGCCAAACCA 60.949 55.000 0.00 0.00 34.95 3.67
1772 2856 0.321210 TGTCATCGACGCCAAACCAT 60.321 50.000 0.00 0.00 34.95 3.55
1773 2857 0.096976 GTCATCGACGCCAAACCATG 59.903 55.000 0.00 0.00 0.00 3.66
1774 2858 1.226379 CATCGACGCCAAACCATGC 60.226 57.895 0.00 0.00 0.00 4.06
1775 2859 1.673993 ATCGACGCCAAACCATGCA 60.674 52.632 0.00 0.00 0.00 3.96
1776 2860 1.922135 ATCGACGCCAAACCATGCAC 61.922 55.000 0.00 0.00 0.00 4.57
1777 2861 2.258286 GACGCCAAACCATGCACC 59.742 61.111 0.00 0.00 0.00 5.01
1778 2862 3.281359 GACGCCAAACCATGCACCC 62.281 63.158 0.00 0.00 0.00 4.61
1779 2863 4.418401 CGCCAAACCATGCACCCG 62.418 66.667 0.00 0.00 0.00 5.28
1780 2864 4.067913 GCCAAACCATGCACCCGG 62.068 66.667 0.00 0.00 0.00 5.73
1781 2865 2.600173 CCAAACCATGCACCCGGT 60.600 61.111 0.00 0.00 36.98 5.28
1783 2867 1.288752 CAAACCATGCACCCGGTTC 59.711 57.895 15.32 0.00 44.80 3.62
1784 2868 1.906333 AAACCATGCACCCGGTTCC 60.906 57.895 15.32 0.00 44.80 3.62
1785 2869 2.648613 AAACCATGCACCCGGTTCCA 62.649 55.000 15.32 0.00 44.80 3.53
1786 2870 2.751436 CCATGCACCCGGTTCCAG 60.751 66.667 0.00 0.00 0.00 3.86
1787 2871 2.034066 CATGCACCCGGTTCCAGT 59.966 61.111 0.00 0.00 0.00 4.00
1788 2872 1.298340 CATGCACCCGGTTCCAGTA 59.702 57.895 0.00 0.00 0.00 2.74
1789 2873 1.024579 CATGCACCCGGTTCCAGTAC 61.025 60.000 0.00 0.00 0.00 2.73
1790 2874 1.198759 ATGCACCCGGTTCCAGTACT 61.199 55.000 0.00 0.00 0.00 2.73
1791 2875 1.373812 GCACCCGGTTCCAGTACTT 59.626 57.895 0.00 0.00 0.00 2.24
1792 2876 0.609662 GCACCCGGTTCCAGTACTTA 59.390 55.000 0.00 0.00 0.00 2.24
1793 2877 1.405121 GCACCCGGTTCCAGTACTTAG 60.405 57.143 0.00 0.00 0.00 2.18
1794 2878 0.900421 ACCCGGTTCCAGTACTTAGC 59.100 55.000 0.00 0.00 0.00 3.09
1795 2879 0.179119 CCCGGTTCCAGTACTTAGCG 60.179 60.000 0.00 11.84 0.00 4.26
1796 2880 0.529378 CCGGTTCCAGTACTTAGCGT 59.471 55.000 15.53 0.00 0.00 5.07
1797 2881 1.468736 CCGGTTCCAGTACTTAGCGTC 60.469 57.143 15.53 0.00 0.00 5.19
1798 2882 1.468736 CGGTTCCAGTACTTAGCGTCC 60.469 57.143 10.99 2.20 0.00 4.79
1799 2883 1.547372 GGTTCCAGTACTTAGCGTCCA 59.453 52.381 0.00 0.00 0.00 4.02
1800 2884 2.603953 GTTCCAGTACTTAGCGTCCAC 58.396 52.381 0.00 0.00 0.00 4.02
1801 2885 0.806868 TCCAGTACTTAGCGTCCACG 59.193 55.000 0.00 0.00 43.27 4.94
1802 2886 0.524862 CCAGTACTTAGCGTCCACGT 59.475 55.000 0.00 0.00 42.22 4.49
1803 2887 1.068055 CCAGTACTTAGCGTCCACGTT 60.068 52.381 0.00 0.00 42.22 3.99
1804 2888 1.983605 CAGTACTTAGCGTCCACGTTG 59.016 52.381 0.00 0.00 42.22 4.10
1805 2889 1.610522 AGTACTTAGCGTCCACGTTGT 59.389 47.619 0.36 0.00 42.22 3.32
1806 2890 2.035066 AGTACTTAGCGTCCACGTTGTT 59.965 45.455 0.36 0.00 42.22 2.83
1807 2891 1.944032 ACTTAGCGTCCACGTTGTTT 58.056 45.000 0.36 0.00 42.22 2.83
1808 2892 3.096489 ACTTAGCGTCCACGTTGTTTA 57.904 42.857 0.36 0.00 42.22 2.01
1809 2893 3.054878 ACTTAGCGTCCACGTTGTTTAG 58.945 45.455 0.36 0.00 42.22 1.85
1810 2894 2.798976 TAGCGTCCACGTTGTTTAGT 57.201 45.000 0.36 0.00 42.22 2.24
1811 2895 1.944032 AGCGTCCACGTTGTTTAGTT 58.056 45.000 0.36 0.00 42.22 2.24
1812 2896 3.096489 AGCGTCCACGTTGTTTAGTTA 57.904 42.857 0.36 0.00 42.22 2.24
1813 2897 3.456280 AGCGTCCACGTTGTTTAGTTAA 58.544 40.909 0.36 0.00 42.22 2.01
1814 2898 4.060205 AGCGTCCACGTTGTTTAGTTAAT 58.940 39.130 0.36 0.00 42.22 1.40
1815 2899 4.512571 AGCGTCCACGTTGTTTAGTTAATT 59.487 37.500 0.36 0.00 42.22 1.40
1816 2900 5.695816 AGCGTCCACGTTGTTTAGTTAATTA 59.304 36.000 0.36 0.00 42.22 1.40
1817 2901 6.011277 GCGTCCACGTTGTTTAGTTAATTAG 58.989 40.000 0.36 0.00 42.22 1.73
1818 2902 6.011277 CGTCCACGTTGTTTAGTTAATTAGC 58.989 40.000 0.00 0.00 34.11 3.09
1819 2903 6.011277 GTCCACGTTGTTTAGTTAATTAGCG 58.989 40.000 0.00 0.00 0.00 4.26
1820 2904 5.695816 TCCACGTTGTTTAGTTAATTAGCGT 59.304 36.000 0.00 0.00 0.00 5.07
1821 2905 6.011277 CCACGTTGTTTAGTTAATTAGCGTC 58.989 40.000 0.00 0.00 0.00 5.19
1822 2906 6.128742 CCACGTTGTTTAGTTAATTAGCGTCT 60.129 38.462 0.00 0.00 0.00 4.18
1823 2907 7.062138 CCACGTTGTTTAGTTAATTAGCGTCTA 59.938 37.037 0.00 0.00 0.00 2.59
1824 2908 8.100306 CACGTTGTTTAGTTAATTAGCGTCTAG 58.900 37.037 0.00 0.00 0.00 2.43
1834 2918 2.882876 GCGTCTAGCGTTGAGGGA 59.117 61.111 8.08 0.00 43.66 4.20
1835 2919 1.437986 GCGTCTAGCGTTGAGGGAT 59.562 57.895 8.08 0.00 43.66 3.85
1836 2920 0.872021 GCGTCTAGCGTTGAGGGATG 60.872 60.000 8.08 0.00 43.66 3.51
1837 2921 0.738975 CGTCTAGCGTTGAGGGATGA 59.261 55.000 0.00 0.00 35.54 2.92
1838 2922 1.268794 CGTCTAGCGTTGAGGGATGAG 60.269 57.143 0.00 0.00 35.54 2.90
1839 2923 1.067821 GTCTAGCGTTGAGGGATGAGG 59.932 57.143 0.00 0.00 0.00 3.86
1840 2924 0.249657 CTAGCGTTGAGGGATGAGGC 60.250 60.000 0.00 0.00 0.00 4.70
1841 2925 2.016393 TAGCGTTGAGGGATGAGGCG 62.016 60.000 0.00 0.00 0.00 5.52
1842 2926 2.892425 CGTTGAGGGATGAGGCGC 60.892 66.667 0.00 0.00 0.00 6.53
1843 2927 2.586792 GTTGAGGGATGAGGCGCT 59.413 61.111 7.64 0.00 0.00 5.92
1844 2928 1.078143 GTTGAGGGATGAGGCGCTT 60.078 57.895 7.64 0.00 0.00 4.68
1845 2929 0.178068 GTTGAGGGATGAGGCGCTTA 59.822 55.000 7.64 0.00 0.00 3.09
1846 2930 0.465705 TTGAGGGATGAGGCGCTTAG 59.534 55.000 7.64 0.00 0.00 2.18
1847 2931 1.369321 GAGGGATGAGGCGCTTAGG 59.631 63.158 7.64 0.00 0.00 2.69
1848 2932 1.383248 AGGGATGAGGCGCTTAGGT 60.383 57.895 7.64 0.00 0.00 3.08
1849 2933 1.227674 GGGATGAGGCGCTTAGGTG 60.228 63.158 7.64 0.00 0.00 4.00
1850 2934 1.522569 GGATGAGGCGCTTAGGTGT 59.477 57.895 7.64 0.00 0.00 4.16
1851 2935 0.811616 GGATGAGGCGCTTAGGTGTG 60.812 60.000 7.64 0.00 0.00 3.82
1852 2936 0.108138 GATGAGGCGCTTAGGTGTGT 60.108 55.000 7.64 0.00 0.00 3.72
1853 2937 0.324943 ATGAGGCGCTTAGGTGTGTT 59.675 50.000 7.64 0.00 0.00 3.32
1854 2938 0.107831 TGAGGCGCTTAGGTGTGTTT 59.892 50.000 7.64 0.00 0.00 2.83
1855 2939 0.796927 GAGGCGCTTAGGTGTGTTTC 59.203 55.000 7.64 0.00 0.00 2.78
1856 2940 0.107831 AGGCGCTTAGGTGTGTTTCA 59.892 50.000 7.64 0.00 0.00 2.69
1857 2941 0.517316 GGCGCTTAGGTGTGTTTCAG 59.483 55.000 7.64 0.00 0.00 3.02
1858 2942 1.508632 GCGCTTAGGTGTGTTTCAGA 58.491 50.000 0.00 0.00 0.00 3.27
1859 2943 2.076863 GCGCTTAGGTGTGTTTCAGAT 58.923 47.619 0.00 0.00 0.00 2.90
1860 2944 2.484264 GCGCTTAGGTGTGTTTCAGATT 59.516 45.455 0.00 0.00 0.00 2.40
1861 2945 3.058224 GCGCTTAGGTGTGTTTCAGATTT 60.058 43.478 0.00 0.00 0.00 2.17
1862 2946 4.556699 GCGCTTAGGTGTGTTTCAGATTTT 60.557 41.667 0.00 0.00 0.00 1.82
1863 2947 5.519722 CGCTTAGGTGTGTTTCAGATTTTT 58.480 37.500 0.00 0.00 0.00 1.94
1864 2948 6.664515 CGCTTAGGTGTGTTTCAGATTTTTA 58.335 36.000 0.00 0.00 0.00 1.52
1865 2949 7.305474 CGCTTAGGTGTGTTTCAGATTTTTAT 58.695 34.615 0.00 0.00 0.00 1.40
1866 2950 7.807907 CGCTTAGGTGTGTTTCAGATTTTTATT 59.192 33.333 0.00 0.00 0.00 1.40
1867 2951 9.476202 GCTTAGGTGTGTTTCAGATTTTTATTT 57.524 29.630 0.00 0.00 0.00 1.40
1897 2981 8.848474 ATTATTTTGTCTATAAGCGCCTATGT 57.152 30.769 8.81 0.00 0.00 2.29
1898 2982 9.938280 ATTATTTTGTCTATAAGCGCCTATGTA 57.062 29.630 8.81 0.00 0.00 2.29
1899 2983 9.767228 TTATTTTGTCTATAAGCGCCTATGTAA 57.233 29.630 8.81 0.00 0.00 2.41
1900 2984 7.709269 TTTTGTCTATAAGCGCCTATGTAAG 57.291 36.000 8.81 0.00 0.00 2.34
1901 2985 4.806330 TGTCTATAAGCGCCTATGTAAGC 58.194 43.478 8.81 0.00 0.00 3.09
1902 2986 4.523173 TGTCTATAAGCGCCTATGTAAGCT 59.477 41.667 8.81 0.00 42.35 3.74
1903 2987 5.096849 GTCTATAAGCGCCTATGTAAGCTC 58.903 45.833 8.81 0.00 39.25 4.09
1904 2988 2.814280 TAAGCGCCTATGTAAGCTCC 57.186 50.000 2.29 0.00 39.25 4.70
1905 2989 1.123928 AAGCGCCTATGTAAGCTCCT 58.876 50.000 2.29 0.00 39.25 3.69
1906 2990 1.996798 AGCGCCTATGTAAGCTCCTA 58.003 50.000 2.29 0.00 34.48 2.94
1907 2991 1.889829 AGCGCCTATGTAAGCTCCTAG 59.110 52.381 2.29 0.00 34.48 3.02
1908 2992 1.670380 GCGCCTATGTAAGCTCCTAGC 60.670 57.143 0.00 0.00 42.84 3.42
1909 2993 1.613925 CGCCTATGTAAGCTCCTAGCA 59.386 52.381 1.22 0.00 45.56 3.49
1910 2994 2.232452 CGCCTATGTAAGCTCCTAGCAT 59.768 50.000 1.22 0.00 45.56 3.79
1911 2995 3.306364 CGCCTATGTAAGCTCCTAGCATT 60.306 47.826 1.22 0.00 45.56 3.56
1912 2996 3.999663 GCCTATGTAAGCTCCTAGCATTG 59.000 47.826 1.22 0.00 45.56 2.82
1913 2997 4.503991 GCCTATGTAAGCTCCTAGCATTGT 60.504 45.833 1.22 0.00 45.56 2.71
1914 2998 5.279506 GCCTATGTAAGCTCCTAGCATTGTA 60.280 44.000 1.22 0.00 45.56 2.41
1915 2999 6.393990 CCTATGTAAGCTCCTAGCATTGTAG 58.606 44.000 1.22 0.00 45.56 2.74
1916 3000 6.209589 CCTATGTAAGCTCCTAGCATTGTAGA 59.790 42.308 1.22 0.00 45.56 2.59
1917 3001 6.678568 ATGTAAGCTCCTAGCATTGTAGAT 57.321 37.500 1.22 0.00 45.56 1.98
1918 3002 5.847304 TGTAAGCTCCTAGCATTGTAGATG 58.153 41.667 1.22 0.00 45.56 2.90
1919 3003 3.399440 AGCTCCTAGCATTGTAGATGC 57.601 47.619 2.90 2.90 45.56 3.91
1920 3004 2.038295 AGCTCCTAGCATTGTAGATGCC 59.962 50.000 7.33 0.00 45.56 4.40
1921 3005 2.873649 GCTCCTAGCATTGTAGATGCCC 60.874 54.545 7.33 0.00 45.59 5.36
1922 3006 2.636893 CTCCTAGCATTGTAGATGCCCT 59.363 50.000 7.33 0.00 45.59 5.19
1923 3007 2.369860 TCCTAGCATTGTAGATGCCCTG 59.630 50.000 7.33 0.00 45.59 4.45
1924 3008 2.369860 CCTAGCATTGTAGATGCCCTGA 59.630 50.000 7.33 0.00 45.59 3.86
1925 3009 2.338577 AGCATTGTAGATGCCCTGAC 57.661 50.000 7.33 0.00 45.59 3.51
1958 3042 1.340405 ACAAATTCCAGCGCTCATCCT 60.340 47.619 7.13 0.00 0.00 3.24
2018 3112 5.661458 ACAGTAGACAGGGACAAATATTCG 58.339 41.667 0.00 0.00 0.00 3.34
2042 3136 1.736681 GCATCAGAGAAGTCAGCAACC 59.263 52.381 0.00 0.00 0.00 3.77
2113 3207 1.303236 CCGGGTGCAGTTTCCATGA 60.303 57.895 0.00 0.00 0.00 3.07
2119 3213 3.429822 GGGTGCAGTTTCCATGATTCATG 60.430 47.826 18.00 18.00 41.10 3.07
2123 3217 3.444916 CAGTTTCCATGATTCATGCTGC 58.555 45.455 19.26 9.84 40.20 5.25
2139 3233 1.607628 GCTGCTTGAGCTCCCATATTG 59.392 52.381 12.15 0.00 45.21 1.90
2147 3241 3.118408 TGAGCTCCCATATTGGTGTACAC 60.118 47.826 18.01 18.01 35.17 2.90
2166 3260 4.653806 CACGATCTGGTGTTTTCTCTTC 57.346 45.455 0.00 0.00 33.24 2.87
2168 3262 4.692625 CACGATCTGGTGTTTTCTCTTCAT 59.307 41.667 0.00 0.00 33.24 2.57
2179 3273 7.257722 GTGTTTTCTCTTCATTTCAGGACAAA 58.742 34.615 0.00 0.00 0.00 2.83
2220 3314 5.163131 TGCCTAAAAGGGAGTAAACTCTTGT 60.163 40.000 9.84 0.00 42.48 3.16
2221 3315 5.181433 GCCTAAAAGGGAGTAAACTCTTGTG 59.819 44.000 9.84 0.00 42.48 3.33
2233 3328 5.779529 AAACTCTTGTGTCAGCAATGAAT 57.220 34.783 0.00 0.00 0.00 2.57
2279 3374 3.665745 AGTGGGAAAACATGACATTGC 57.334 42.857 0.00 0.00 0.00 3.56
2350 3447 5.904362 AGATTGAAGGGAGCACAAAATAC 57.096 39.130 0.00 0.00 0.00 1.89
2398 3495 6.544931 TGCTACACTACTCCTGTATTCGTAAT 59.455 38.462 0.00 0.00 0.00 1.89
2432 3529 3.726436 GCTGTCGCGCTGAATTATAATC 58.274 45.455 5.56 0.00 0.00 1.75
2454 3551 1.654105 GTTCGTTCATAGCAGACACCG 59.346 52.381 0.00 0.00 0.00 4.94
2532 3629 8.733857 CTTTAAGGAGTTTAAAGTGCAGAATG 57.266 34.615 15.85 8.08 46.89 2.67
2538 3635 6.349363 GGAGTTTAAAGTGCAGAATGTAAGGG 60.349 42.308 9.46 0.00 39.31 3.95
2554 3651 6.525578 TGTAAGGGCCAGATAATATACTCG 57.474 41.667 6.18 0.00 0.00 4.18
2555 3652 6.250711 TGTAAGGGCCAGATAATATACTCGA 58.749 40.000 6.18 0.00 0.00 4.04
2556 3653 5.662674 AAGGGCCAGATAATATACTCGAC 57.337 43.478 6.18 0.00 0.00 4.20
2557 3654 3.695060 AGGGCCAGATAATATACTCGACG 59.305 47.826 6.18 0.00 0.00 5.12
2558 3655 3.693085 GGGCCAGATAATATACTCGACGA 59.307 47.826 4.39 0.00 0.00 4.20
2559 3656 4.338682 GGGCCAGATAATATACTCGACGAT 59.661 45.833 4.39 0.00 0.00 3.73
2560 3657 5.530171 GGGCCAGATAATATACTCGACGATA 59.470 44.000 4.39 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 114 1.722677 GGCCTACTCTCTGTCGTCG 59.277 63.158 0.00 0.00 0.00 5.12
246 260 0.882474 GTCTACTGCACTGAGACCGT 59.118 55.000 6.63 0.00 34.72 4.83
281 295 4.037208 GGTTTCGACGATCATAACTCCCTA 59.963 45.833 0.00 0.00 0.00 3.53
283 297 3.121544 GGTTTCGACGATCATAACTCCC 58.878 50.000 0.00 0.00 0.00 4.30
291 305 4.886247 AAGTTTTTGGTTTCGACGATCA 57.114 36.364 0.00 0.00 0.00 2.92
573 606 5.163152 ACCTGAGTTCTTCTTCAACCTTCAT 60.163 40.000 0.00 0.00 0.00 2.57
654 706 6.334202 TGGAAACGCAAAAATCTACAGTTTT 58.666 32.000 0.00 0.00 31.57 2.43
661 713 2.809119 TCGCTGGAAACGCAAAAATCTA 59.191 40.909 0.00 0.00 0.00 1.98
662 714 1.606668 TCGCTGGAAACGCAAAAATCT 59.393 42.857 0.00 0.00 0.00 2.40
668 720 3.353836 GGCTCGCTGGAAACGCAA 61.354 61.111 0.00 0.00 0.00 4.85
698 750 1.128692 GCATCGCACGCTTCTTAAAGT 59.871 47.619 0.00 0.00 34.79 2.66
739 791 2.169561 AGAAAAATGCCGGTTTGGTTGT 59.830 40.909 1.90 0.00 41.21 3.32
753 805 2.874751 CCGCGCGGGAAGAAAAAT 59.125 55.556 40.50 0.00 38.47 1.82
808 860 1.533033 TGGGACCTCGCTCACTCAA 60.533 57.895 0.00 0.00 0.00 3.02
809 861 2.117423 TGGGACCTCGCTCACTCA 59.883 61.111 0.00 0.00 0.00 3.41
810 862 2.574399 GTGGGACCTCGCTCACTC 59.426 66.667 0.00 0.00 0.00 3.51
811 863 2.997897 GGTGGGACCTCGCTCACT 60.998 66.667 0.00 0.00 34.73 3.41
820 872 2.298661 CCAGTGGGTAGGTGGGACC 61.299 68.421 0.00 0.00 38.99 4.46
821 873 3.400188 CCAGTGGGTAGGTGGGAC 58.600 66.667 0.00 0.00 0.00 4.46
895 950 2.677979 GCTTCCGTCGCTGGTTTCC 61.678 63.158 0.00 0.00 0.00 3.13
961 1028 1.549170 AGGGGCGAGGCGTTTATATAG 59.451 52.381 0.00 0.00 0.00 1.31
993 1063 0.384309 TTGAGTCGACGCTGTGTTCT 59.616 50.000 20.11 0.00 0.00 3.01
994 1064 0.503117 GTTGAGTCGACGCTGTGTTC 59.497 55.000 20.11 6.32 0.00 3.18
995 1065 0.874607 GGTTGAGTCGACGCTGTGTT 60.875 55.000 20.11 0.00 0.00 3.32
1031 1117 2.289820 GGGAAACTGAACTCGGTTGTTC 59.710 50.000 4.71 8.98 44.10 3.18
1055 1141 2.969300 TTTCGGTGGAGGTTGTGCCC 62.969 60.000 0.00 0.00 38.26 5.36
1061 1147 0.106918 TTGTGCTTTCGGTGGAGGTT 60.107 50.000 0.00 0.00 0.00 3.50
1069 1171 2.154854 TCTCTGTCTTGTGCTTTCGG 57.845 50.000 0.00 0.00 0.00 4.30
1072 1174 3.072944 GCTCATCTCTGTCTTGTGCTTT 58.927 45.455 0.00 0.00 0.00 3.51
1114 1216 0.902984 TAGCCACCACCATCGACACT 60.903 55.000 0.00 0.00 0.00 3.55
1147 1249 3.706373 TCCTTGAGCGCCTCCACC 61.706 66.667 2.29 0.00 0.00 4.61
1348 2384 2.384933 ATCAGTTTGGCCCCCAGCAA 62.385 55.000 0.00 0.00 46.50 3.91
1357 2393 3.253188 TGCTGTTAGACAATCAGTTTGGC 59.747 43.478 0.00 0.00 44.39 4.52
1360 2396 6.639632 AATGTGCTGTTAGACAATCAGTTT 57.360 33.333 0.00 0.00 0.00 2.66
1614 2696 9.152327 ACATCTGAGAATAGATTGGTAAGATCA 57.848 33.333 0.00 0.00 35.28 2.92
1628 2710 6.543465 CCATGCCTTAAACACATCTGAGAATA 59.457 38.462 0.00 0.00 0.00 1.75
1629 2711 5.359009 CCATGCCTTAAACACATCTGAGAAT 59.641 40.000 0.00 0.00 0.00 2.40
1630 2712 4.701651 CCATGCCTTAAACACATCTGAGAA 59.298 41.667 0.00 0.00 0.00 2.87
1631 2713 4.263462 ACCATGCCTTAAACACATCTGAGA 60.263 41.667 0.00 0.00 0.00 3.27
1632 2714 4.012374 ACCATGCCTTAAACACATCTGAG 58.988 43.478 0.00 0.00 0.00 3.35
1662 2746 1.831286 CCCAGCAATGGAGATGCCC 60.831 63.158 0.00 0.00 44.91 5.36
1663 2747 2.496291 GCCCAGCAATGGAGATGCC 61.496 63.158 0.00 0.00 44.91 4.40
1664 2748 2.842256 CGCCCAGCAATGGAGATGC 61.842 63.158 0.00 0.00 44.15 3.91
1665 2749 3.428797 CGCCCAGCAATGGAGATG 58.571 61.111 0.00 0.00 0.00 2.90
1689 2773 2.869503 ATTACGAACCTGGCGCCTGG 62.870 60.000 41.29 41.29 40.33 4.45
1690 2774 1.429148 GATTACGAACCTGGCGCCTG 61.429 60.000 29.70 27.29 0.00 4.85
1691 2775 1.153429 GATTACGAACCTGGCGCCT 60.153 57.895 29.70 6.86 0.00 5.52
1692 2776 2.178235 GGATTACGAACCTGGCGCC 61.178 63.158 22.73 22.73 0.00 6.53
1693 2777 2.178235 GGGATTACGAACCTGGCGC 61.178 63.158 0.00 0.00 0.00 6.53
1694 2778 1.881252 CGGGATTACGAACCTGGCG 60.881 63.158 0.00 0.00 35.47 5.69
1695 2779 1.523032 CCGGGATTACGAACCTGGC 60.523 63.158 0.00 0.00 44.34 4.85
1696 2780 4.848685 CCGGGATTACGAACCTGG 57.151 61.111 0.00 0.00 44.78 4.45
1697 2781 0.810031 CTGCCGGGATTACGAACCTG 60.810 60.000 2.18 0.00 35.47 4.00
1698 2782 0.974010 TCTGCCGGGATTACGAACCT 60.974 55.000 2.18 0.00 35.47 3.50
1699 2783 0.106149 ATCTGCCGGGATTACGAACC 59.894 55.000 2.18 0.00 35.47 3.62
1700 2784 1.949465 AATCTGCCGGGATTACGAAC 58.051 50.000 2.18 0.00 34.59 3.95
1701 2785 2.547218 GCTAATCTGCCGGGATTACGAA 60.547 50.000 2.18 0.00 37.20 3.85
1702 2786 1.000506 GCTAATCTGCCGGGATTACGA 59.999 52.381 2.18 0.00 37.20 3.43
1703 2787 1.429463 GCTAATCTGCCGGGATTACG 58.571 55.000 2.18 4.91 37.20 3.18
1704 2788 1.429463 CGCTAATCTGCCGGGATTAC 58.571 55.000 2.18 3.83 37.20 1.89
1705 2789 0.320374 CCGCTAATCTGCCGGGATTA 59.680 55.000 2.18 8.25 37.20 1.75
1706 2790 1.071471 CCGCTAATCTGCCGGGATT 59.929 57.895 2.18 7.42 39.06 3.01
1707 2791 1.696097 AACCGCTAATCTGCCGGGAT 61.696 55.000 2.18 0.00 33.33 3.85
1708 2792 2.363975 AACCGCTAATCTGCCGGGA 61.364 57.895 2.18 0.00 33.33 5.14
1709 2793 2.180204 CAACCGCTAATCTGCCGGG 61.180 63.158 2.18 0.00 33.33 5.73
1710 2794 2.823829 GCAACCGCTAATCTGCCGG 61.824 63.158 0.00 0.00 34.30 6.13
1711 2795 2.709475 GCAACCGCTAATCTGCCG 59.291 61.111 0.00 0.00 34.30 5.69
1712 2796 3.111038 GGCAACCGCTAATCTGCC 58.889 61.111 0.00 0.00 46.95 4.85
1713 2797 2.709475 CGGCAACCGCTAATCTGC 59.291 61.111 0.00 0.00 41.17 4.26
1714 2798 2.180204 CCCGGCAACCGCTAATCTG 61.180 63.158 0.00 0.00 46.86 2.90
1715 2799 2.189521 CCCGGCAACCGCTAATCT 59.810 61.111 0.00 0.00 46.86 2.40
1716 2800 2.124860 ACCCGGCAACCGCTAATC 60.125 61.111 0.00 0.00 46.86 1.75
1717 2801 1.901654 TACACCCGGCAACCGCTAAT 61.902 55.000 0.00 0.00 46.86 1.73
1718 2802 2.109517 TTACACCCGGCAACCGCTAA 62.110 55.000 0.00 0.00 46.86 3.09
1719 2803 1.901654 ATTACACCCGGCAACCGCTA 61.902 55.000 0.00 0.00 46.86 4.26
1720 2804 3.262448 ATTACACCCGGCAACCGCT 62.262 57.895 0.00 0.00 46.86 5.52
1721 2805 2.748647 ATTACACCCGGCAACCGC 60.749 61.111 0.00 0.00 46.86 5.68
1723 2807 1.029947 CAGGATTACACCCGGCAACC 61.030 60.000 0.00 0.00 0.00 3.77
1724 2808 1.029947 CCAGGATTACACCCGGCAAC 61.030 60.000 0.00 0.00 0.00 4.17
1725 2809 1.301623 CCAGGATTACACCCGGCAA 59.698 57.895 0.00 0.00 0.00 4.52
1726 2810 1.921346 ACCAGGATTACACCCGGCA 60.921 57.895 0.00 0.00 0.00 5.69
1727 2811 1.451387 CACCAGGATTACACCCGGC 60.451 63.158 0.00 0.00 0.00 6.13
1728 2812 0.107848 GACACCAGGATTACACCCGG 60.108 60.000 0.00 0.00 0.00 5.73
1729 2813 0.611200 TGACACCAGGATTACACCCG 59.389 55.000 0.00 0.00 0.00 5.28
1730 2814 2.433436 GTTGACACCAGGATTACACCC 58.567 52.381 0.00 0.00 0.00 4.61
1731 2815 2.433436 GGTTGACACCAGGATTACACC 58.567 52.381 0.00 0.00 43.61 4.16
1732 2816 2.039879 AGGGTTGACACCAGGATTACAC 59.960 50.000 0.00 0.00 46.43 2.90
1733 2817 2.039746 CAGGGTTGACACCAGGATTACA 59.960 50.000 0.00 0.00 46.43 2.41
1734 2818 2.039879 ACAGGGTTGACACCAGGATTAC 59.960 50.000 0.00 0.00 46.43 1.89
1735 2819 2.304761 GACAGGGTTGACACCAGGATTA 59.695 50.000 0.00 0.00 46.43 1.75
1736 2820 1.073923 GACAGGGTTGACACCAGGATT 59.926 52.381 0.00 0.00 46.43 3.01
1737 2821 0.693049 GACAGGGTTGACACCAGGAT 59.307 55.000 0.00 0.00 46.43 3.24
1738 2822 0.692756 TGACAGGGTTGACACCAGGA 60.693 55.000 0.00 0.00 46.43 3.86
1739 2823 0.401738 ATGACAGGGTTGACACCAGG 59.598 55.000 0.00 0.00 46.43 4.45
1740 2824 1.813513 GATGACAGGGTTGACACCAG 58.186 55.000 0.00 0.00 46.43 4.00
1741 2825 0.034756 CGATGACAGGGTTGACACCA 59.965 55.000 0.00 0.00 46.43 4.17
1742 2826 0.320374 TCGATGACAGGGTTGACACC 59.680 55.000 0.00 0.00 43.37 4.16
1743 2827 1.429463 GTCGATGACAGGGTTGACAC 58.571 55.000 0.00 0.00 32.06 3.67
1744 2828 0.038618 CGTCGATGACAGGGTTGACA 60.039 55.000 0.00 0.00 33.71 3.58
1745 2829 1.352156 GCGTCGATGACAGGGTTGAC 61.352 60.000 9.31 0.00 32.09 3.18
1746 2830 1.080093 GCGTCGATGACAGGGTTGA 60.080 57.895 9.31 0.00 32.09 3.18
1747 2831 2.100631 GGCGTCGATGACAGGGTTG 61.101 63.158 9.31 0.00 32.09 3.77
1748 2832 2.107041 TTGGCGTCGATGACAGGGTT 62.107 55.000 13.96 0.00 32.09 4.11
1749 2833 2.107041 TTTGGCGTCGATGACAGGGT 62.107 55.000 13.96 0.00 32.09 4.34
1750 2834 1.375396 TTTGGCGTCGATGACAGGG 60.375 57.895 13.96 0.00 32.09 4.45
1751 2835 1.635663 GGTTTGGCGTCGATGACAGG 61.636 60.000 13.96 0.00 32.09 4.00
1752 2836 0.948623 TGGTTTGGCGTCGATGACAG 60.949 55.000 13.96 0.00 32.09 3.51
1753 2837 0.321210 ATGGTTTGGCGTCGATGACA 60.321 50.000 9.73 9.73 32.09 3.58
1754 2838 0.096976 CATGGTTTGGCGTCGATGAC 59.903 55.000 9.31 6.06 0.00 3.06
1755 2839 1.643868 GCATGGTTTGGCGTCGATGA 61.644 55.000 9.31 0.00 0.00 2.92
1756 2840 1.226379 GCATGGTTTGGCGTCGATG 60.226 57.895 0.00 0.00 0.00 3.84
1757 2841 1.673993 TGCATGGTTTGGCGTCGAT 60.674 52.632 0.00 0.00 0.00 3.59
1758 2842 2.281139 TGCATGGTTTGGCGTCGA 60.281 55.556 0.00 0.00 0.00 4.20
1759 2843 2.126888 GTGCATGGTTTGGCGTCG 60.127 61.111 0.00 0.00 0.00 5.12
1760 2844 2.258286 GGTGCATGGTTTGGCGTC 59.742 61.111 0.00 0.00 0.00 5.19
1761 2845 3.302344 GGGTGCATGGTTTGGCGT 61.302 61.111 0.00 0.00 0.00 5.68
1762 2846 4.418401 CGGGTGCATGGTTTGGCG 62.418 66.667 0.00 0.00 0.00 5.69
1763 2847 4.067913 CCGGGTGCATGGTTTGGC 62.068 66.667 0.00 0.00 0.00 4.52
1764 2848 2.206536 AACCGGGTGCATGGTTTGG 61.207 57.895 6.32 2.73 46.04 3.28
1765 2849 3.453988 AACCGGGTGCATGGTTTG 58.546 55.556 6.32 0.00 46.04 2.93
1768 2852 3.567579 CTGGAACCGGGTGCATGGT 62.568 63.158 16.41 2.69 41.20 3.55
1769 2853 2.191786 TACTGGAACCGGGTGCATGG 62.192 60.000 16.41 6.40 0.00 3.66
1770 2854 1.024579 GTACTGGAACCGGGTGCATG 61.025 60.000 16.41 11.58 0.00 4.06
1771 2855 1.198759 AGTACTGGAACCGGGTGCAT 61.199 55.000 16.41 7.69 0.00 3.96
1772 2856 1.412453 AAGTACTGGAACCGGGTGCA 61.412 55.000 14.98 14.98 0.00 4.57
1773 2857 0.609662 TAAGTACTGGAACCGGGTGC 59.390 55.000 2.93 2.93 0.00 5.01
1774 2858 1.405121 GCTAAGTACTGGAACCGGGTG 60.405 57.143 6.32 0.00 0.00 4.61
1775 2859 0.900421 GCTAAGTACTGGAACCGGGT 59.100 55.000 6.32 0.00 0.00 5.28
1776 2860 0.179119 CGCTAAGTACTGGAACCGGG 60.179 60.000 6.32 0.00 0.00 5.73
1777 2861 0.529378 ACGCTAAGTACTGGAACCGG 59.471 55.000 0.00 0.00 0.00 5.28
1778 2862 1.468736 GGACGCTAAGTACTGGAACCG 60.469 57.143 0.00 0.00 0.00 4.44
1779 2863 1.547372 TGGACGCTAAGTACTGGAACC 59.453 52.381 0.00 0.00 33.83 3.62
1780 2864 2.603953 GTGGACGCTAAGTACTGGAAC 58.396 52.381 0.00 0.00 33.83 3.62
1781 2865 1.200716 CGTGGACGCTAAGTACTGGAA 59.799 52.381 0.00 0.00 33.83 3.53
1782 2866 0.806868 CGTGGACGCTAAGTACTGGA 59.193 55.000 0.00 0.00 33.83 3.86
1783 2867 0.524862 ACGTGGACGCTAAGTACTGG 59.475 55.000 0.00 0.00 44.43 4.00
1784 2868 1.983605 CAACGTGGACGCTAAGTACTG 59.016 52.381 0.00 0.00 44.43 2.74
1785 2869 1.610522 ACAACGTGGACGCTAAGTACT 59.389 47.619 0.00 0.00 44.43 2.73
1786 2870 2.056094 ACAACGTGGACGCTAAGTAC 57.944 50.000 0.00 0.00 44.43 2.73
1787 2871 2.798976 AACAACGTGGACGCTAAGTA 57.201 45.000 0.00 0.00 44.43 2.24
1788 2872 1.944032 AAACAACGTGGACGCTAAGT 58.056 45.000 0.00 0.00 44.43 2.24
1789 2873 3.054878 ACTAAACAACGTGGACGCTAAG 58.945 45.455 0.00 0.00 44.43 2.18
1790 2874 3.096489 ACTAAACAACGTGGACGCTAA 57.904 42.857 0.00 0.00 44.43 3.09
1791 2875 2.798976 ACTAAACAACGTGGACGCTA 57.201 45.000 0.00 0.00 44.43 4.26
1792 2876 1.944032 AACTAAACAACGTGGACGCT 58.056 45.000 0.00 0.00 44.43 5.07
1793 2877 3.857923 TTAACTAAACAACGTGGACGC 57.142 42.857 0.00 0.00 44.43 5.19
1794 2878 6.011277 GCTAATTAACTAAACAACGTGGACG 58.989 40.000 0.00 0.00 46.33 4.79
1795 2879 6.011277 CGCTAATTAACTAAACAACGTGGAC 58.989 40.000 0.00 0.00 0.00 4.02
1796 2880 5.695816 ACGCTAATTAACTAAACAACGTGGA 59.304 36.000 0.00 0.00 0.00 4.02
1797 2881 5.919196 ACGCTAATTAACTAAACAACGTGG 58.081 37.500 0.00 0.00 0.00 4.94
1798 2882 6.814343 AGACGCTAATTAACTAAACAACGTG 58.186 36.000 0.00 0.00 0.00 4.49
1799 2883 7.201384 GCTAGACGCTAATTAACTAAACAACGT 60.201 37.037 0.00 0.00 35.14 3.99
1800 2884 7.109257 GCTAGACGCTAATTAACTAAACAACG 58.891 38.462 0.00 0.00 35.14 4.10
1801 2885 7.109257 CGCTAGACGCTAATTAACTAAACAAC 58.891 38.462 0.00 0.00 36.13 3.32
1802 2886 7.213252 CGCTAGACGCTAATTAACTAAACAA 57.787 36.000 0.00 0.00 36.13 2.83
1803 2887 6.801367 CGCTAGACGCTAATTAACTAAACA 57.199 37.500 0.00 0.00 36.13 2.83
1819 2903 1.067821 CCTCATCCCTCAACGCTAGAC 59.932 57.143 0.00 0.00 0.00 2.59
1820 2904 1.403814 CCTCATCCCTCAACGCTAGA 58.596 55.000 0.00 0.00 0.00 2.43
1821 2905 0.249657 GCCTCATCCCTCAACGCTAG 60.250 60.000 0.00 0.00 0.00 3.42
1822 2906 1.823295 GCCTCATCCCTCAACGCTA 59.177 57.895 0.00 0.00 0.00 4.26
1823 2907 2.586792 GCCTCATCCCTCAACGCT 59.413 61.111 0.00 0.00 0.00 5.07
1824 2908 2.892425 CGCCTCATCCCTCAACGC 60.892 66.667 0.00 0.00 0.00 4.84
1825 2909 2.859273 AAGCGCCTCATCCCTCAACG 62.859 60.000 2.29 0.00 0.00 4.10
1826 2910 0.178068 TAAGCGCCTCATCCCTCAAC 59.822 55.000 2.29 0.00 0.00 3.18
1827 2911 0.465705 CTAAGCGCCTCATCCCTCAA 59.534 55.000 2.29 0.00 0.00 3.02
1828 2912 1.402896 CCTAAGCGCCTCATCCCTCA 61.403 60.000 2.29 0.00 0.00 3.86
1829 2913 1.369321 CCTAAGCGCCTCATCCCTC 59.631 63.158 2.29 0.00 0.00 4.30
1830 2914 1.383248 ACCTAAGCGCCTCATCCCT 60.383 57.895 2.29 0.00 0.00 4.20
1831 2915 1.227674 CACCTAAGCGCCTCATCCC 60.228 63.158 2.29 0.00 0.00 3.85
1832 2916 0.811616 CACACCTAAGCGCCTCATCC 60.812 60.000 2.29 0.00 0.00 3.51
1833 2917 0.108138 ACACACCTAAGCGCCTCATC 60.108 55.000 2.29 0.00 0.00 2.92
1834 2918 0.324943 AACACACCTAAGCGCCTCAT 59.675 50.000 2.29 0.00 0.00 2.90
1835 2919 0.107831 AAACACACCTAAGCGCCTCA 59.892 50.000 2.29 0.00 0.00 3.86
1836 2920 0.796927 GAAACACACCTAAGCGCCTC 59.203 55.000 2.29 0.00 0.00 4.70
1837 2921 0.107831 TGAAACACACCTAAGCGCCT 59.892 50.000 2.29 0.00 0.00 5.52
1838 2922 0.517316 CTGAAACACACCTAAGCGCC 59.483 55.000 2.29 0.00 0.00 6.53
1839 2923 1.508632 TCTGAAACACACCTAAGCGC 58.491 50.000 0.00 0.00 0.00 5.92
1840 2924 4.749245 AAATCTGAAACACACCTAAGCG 57.251 40.909 0.00 0.00 0.00 4.68
1841 2925 9.476202 AAATAAAAATCTGAAACACACCTAAGC 57.524 29.630 0.00 0.00 0.00 3.09
1871 2955 9.938280 ACATAGGCGCTTATAGACAAAATAATA 57.062 29.630 12.10 0.00 0.00 0.98
1872 2956 8.848474 ACATAGGCGCTTATAGACAAAATAAT 57.152 30.769 12.10 0.00 0.00 1.28
1873 2957 9.767228 TTACATAGGCGCTTATAGACAAAATAA 57.233 29.630 12.10 0.00 0.00 1.40
1874 2958 9.419297 CTTACATAGGCGCTTATAGACAAAATA 57.581 33.333 12.10 0.00 0.00 1.40
1875 2959 7.095187 GCTTACATAGGCGCTTATAGACAAAAT 60.095 37.037 12.10 0.00 0.00 1.82
1876 2960 6.202188 GCTTACATAGGCGCTTATAGACAAAA 59.798 38.462 12.10 0.62 0.00 2.44
1877 2961 5.694910 GCTTACATAGGCGCTTATAGACAAA 59.305 40.000 12.10 2.19 0.00 2.83
1878 2962 5.010719 AGCTTACATAGGCGCTTATAGACAA 59.989 40.000 12.10 3.47 33.04 3.18
1879 2963 4.523173 AGCTTACATAGGCGCTTATAGACA 59.477 41.667 12.10 0.00 33.04 3.41
1880 2964 5.061920 AGCTTACATAGGCGCTTATAGAC 57.938 43.478 12.10 3.57 33.04 2.59
1881 2965 4.158025 GGAGCTTACATAGGCGCTTATAGA 59.842 45.833 12.10 0.09 33.04 1.98
1882 2966 4.158764 AGGAGCTTACATAGGCGCTTATAG 59.841 45.833 12.10 7.51 33.04 1.31
1883 2967 4.087182 AGGAGCTTACATAGGCGCTTATA 58.913 43.478 12.10 0.73 33.04 0.98
1884 2968 2.900546 AGGAGCTTACATAGGCGCTTAT 59.099 45.455 7.64 6.83 33.04 1.73
1885 2969 2.317040 AGGAGCTTACATAGGCGCTTA 58.683 47.619 7.64 3.82 33.04 3.09
1886 2970 1.123928 AGGAGCTTACATAGGCGCTT 58.876 50.000 7.64 0.52 33.04 4.68
1887 2971 1.889829 CTAGGAGCTTACATAGGCGCT 59.110 52.381 7.64 0.00 33.04 5.92
1888 2972 1.670380 GCTAGGAGCTTACATAGGCGC 60.670 57.143 0.00 0.00 38.45 6.53
1889 2973 1.613925 TGCTAGGAGCTTACATAGGCG 59.386 52.381 0.00 0.00 42.97 5.52
1890 2974 3.971245 ATGCTAGGAGCTTACATAGGC 57.029 47.619 0.00 0.00 42.97 3.93
1891 2975 5.220710 ACAATGCTAGGAGCTTACATAGG 57.779 43.478 0.00 0.00 42.97 2.57
1892 2976 7.220741 TCTACAATGCTAGGAGCTTACATAG 57.779 40.000 0.00 0.00 42.97 2.23
1893 2977 7.606349 CATCTACAATGCTAGGAGCTTACATA 58.394 38.462 0.00 0.00 42.97 2.29
1894 2978 6.462500 CATCTACAATGCTAGGAGCTTACAT 58.538 40.000 0.00 0.00 42.97 2.29
1895 2979 5.740224 GCATCTACAATGCTAGGAGCTTACA 60.740 44.000 2.84 0.00 42.97 2.41
1896 2980 4.688413 GCATCTACAATGCTAGGAGCTTAC 59.312 45.833 2.84 0.00 42.97 2.34
1897 2981 4.262635 GGCATCTACAATGCTAGGAGCTTA 60.263 45.833 9.62 0.00 42.97 3.09
1898 2982 3.495806 GGCATCTACAATGCTAGGAGCTT 60.496 47.826 9.62 0.00 42.97 3.74
1899 2983 2.038295 GGCATCTACAATGCTAGGAGCT 59.962 50.000 9.62 0.00 42.97 4.09
1900 2984 2.421619 GGCATCTACAATGCTAGGAGC 58.578 52.381 9.62 0.00 44.02 4.70
1901 2985 2.636893 AGGGCATCTACAATGCTAGGAG 59.363 50.000 9.62 0.00 44.02 3.69
1902 2986 2.369860 CAGGGCATCTACAATGCTAGGA 59.630 50.000 9.62 0.00 44.02 2.94
1903 2987 2.369860 TCAGGGCATCTACAATGCTAGG 59.630 50.000 9.62 0.83 44.02 3.02
1904 2988 3.397482 GTCAGGGCATCTACAATGCTAG 58.603 50.000 9.62 0.00 44.02 3.42
1905 2989 2.224042 CGTCAGGGCATCTACAATGCTA 60.224 50.000 9.62 0.00 44.02 3.49
1906 2990 1.473965 CGTCAGGGCATCTACAATGCT 60.474 52.381 9.62 0.00 44.02 3.79
1907 2991 0.940126 CGTCAGGGCATCTACAATGC 59.060 55.000 1.40 1.40 43.85 3.56
1908 2992 2.602257 TCGTCAGGGCATCTACAATG 57.398 50.000 0.00 0.00 0.00 2.82
1909 2993 2.700371 TGATCGTCAGGGCATCTACAAT 59.300 45.455 0.00 0.00 0.00 2.71
1910 2994 2.101415 CTGATCGTCAGGGCATCTACAA 59.899 50.000 7.01 0.00 40.71 2.41
1911 2995 1.683385 CTGATCGTCAGGGCATCTACA 59.317 52.381 7.01 0.00 40.71 2.74
1912 2996 1.957177 TCTGATCGTCAGGGCATCTAC 59.043 52.381 12.89 0.00 44.39 2.59
1913 2997 2.364972 TCTGATCGTCAGGGCATCTA 57.635 50.000 12.89 0.00 44.39 1.98
1914 2998 1.617850 GATCTGATCGTCAGGGCATCT 59.382 52.381 12.89 0.00 44.39 2.90
1915 2999 1.617850 AGATCTGATCGTCAGGGCATC 59.382 52.381 11.73 9.59 44.39 3.91
1916 3000 1.617850 GAGATCTGATCGTCAGGGCAT 59.382 52.381 11.73 2.67 44.39 4.40
1917 3001 1.035923 GAGATCTGATCGTCAGGGCA 58.964 55.000 11.73 0.00 44.39 5.36
1918 3002 1.035923 TGAGATCTGATCGTCAGGGC 58.964 55.000 11.73 7.24 44.39 5.19
1919 3003 2.428530 TGTTGAGATCTGATCGTCAGGG 59.571 50.000 11.73 0.00 44.39 4.45
1920 3004 3.790152 TGTTGAGATCTGATCGTCAGG 57.210 47.619 11.73 0.00 44.39 3.86
1921 3005 6.238049 GGAATTTGTTGAGATCTGATCGTCAG 60.238 42.308 11.73 8.24 45.59 3.51
1922 3006 5.582269 GGAATTTGTTGAGATCTGATCGTCA 59.418 40.000 11.73 12.27 0.00 4.35
1923 3007 5.582269 TGGAATTTGTTGAGATCTGATCGTC 59.418 40.000 11.73 10.14 0.00 4.20
1924 3008 5.491070 TGGAATTTGTTGAGATCTGATCGT 58.509 37.500 11.73 1.16 0.00 3.73
1925 3009 5.503683 GCTGGAATTTGTTGAGATCTGATCG 60.504 44.000 11.73 0.00 0.00 3.69
1958 3042 4.040217 TCTGCCACTTAACTTAACCGGTTA 59.960 41.667 23.17 23.17 0.00 2.85
2018 3112 2.211806 GCTGACTTCTCTGATGCATCC 58.788 52.381 23.67 6.32 0.00 3.51
2069 3163 0.613012 GCAGTTGAGGCCTCCCAAAT 60.613 55.000 29.95 15.54 0.00 2.32
2101 3195 3.444916 CAGCATGAATCATGGAAACTGC 58.555 45.455 22.95 9.70 41.64 4.40
2119 3213 3.649738 CCAATATGGGAGCTCAAGCAGC 61.650 54.545 17.19 0.00 40.47 5.25
2123 3217 3.287867 ACACCAATATGGGAGCTCAAG 57.712 47.619 17.19 0.00 43.37 3.02
2131 3225 4.058124 CAGATCGTGTACACCAATATGGG 58.942 47.826 20.11 3.80 43.37 4.00
2139 3233 2.450609 AACACCAGATCGTGTACACC 57.549 50.000 20.11 6.53 46.19 4.16
2147 3241 5.869753 AATGAAGAGAAAACACCAGATCG 57.130 39.130 0.00 0.00 0.00 3.69
2220 3314 6.413892 TGTCTTACCATATTCATTGCTGACA 58.586 36.000 0.00 0.00 0.00 3.58
2221 3315 6.540189 ACTGTCTTACCATATTCATTGCTGAC 59.460 38.462 0.00 0.00 0.00 3.51
2233 3328 6.938698 TCCCTTGTTTACTGTCTTACCATA 57.061 37.500 0.00 0.00 0.00 2.74
2279 3374 0.740149 TGGAACAGCAGCAACACTTG 59.260 50.000 0.00 0.00 0.00 3.16
2350 3447 2.030007 GCTGAGACCTGCTATGCTCTAG 60.030 54.545 0.00 0.00 34.82 2.43
2398 3495 0.669318 CGACAGCGGGCAAGAAAGTA 60.669 55.000 0.00 0.00 0.00 2.24
2432 3529 2.668457 GGTGTCTGCTATGAACGAACTG 59.332 50.000 0.00 0.00 0.00 3.16
2454 3551 5.235616 TCTGAATCAACGTTGTTACCTTGTC 59.764 40.000 26.47 12.57 0.00 3.18
2508 3605 8.232913 ACATTCTGCACTTTAAACTCCTTAAA 57.767 30.769 0.00 0.00 37.18 1.52
2509 3606 7.817418 ACATTCTGCACTTTAAACTCCTTAA 57.183 32.000 0.00 0.00 0.00 1.85
2522 3619 0.698238 TGGCCCTTACATTCTGCACT 59.302 50.000 0.00 0.00 0.00 4.40
2532 3629 6.562518 GTCGAGTATATTATCTGGCCCTTAC 58.437 44.000 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.