Multiple sequence alignment - TraesCS7D01G438300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G438300 chr7D 100.000 3425 0 0 1 3425 557582296 557578872 0.000000e+00 6325.0
1 TraesCS7D01G438300 chr7D 86.431 538 33 15 1541 2077 54150046 54149548 1.390000e-153 553.0
2 TraesCS7D01G438300 chr7D 90.184 163 13 3 3197 3359 635714247 635714088 3.460000e-50 209.0
3 TraesCS7D01G438300 chr7D 90.184 163 13 3 3197 3359 636297187 636297346 3.460000e-50 209.0
4 TraesCS7D01G438300 chr7D 83.871 217 18 10 2513 2726 207589420 207589218 1.250000e-44 191.0
5 TraesCS7D01G438300 chr7D 92.157 102 8 0 2625 2726 470591895 470591996 9.910000e-31 145.0
6 TraesCS7D01G438300 chr7A 89.575 2379 150 48 560 2865 643086091 643083738 0.000000e+00 2929.0
7 TraesCS7D01G438300 chr7A 84.875 562 49 15 2864 3425 643083701 643083176 5.030000e-148 534.0
8 TraesCS7D01G438300 chr7A 84.867 489 36 17 2864 3352 643081437 643080987 3.110000e-125 459.0
9 TraesCS7D01G438300 chr7A 88.276 290 23 5 560 845 643086831 643086549 1.520000e-88 337.0
10 TraesCS7D01G438300 chr7A 92.432 185 7 2 2557 2735 643081745 643081562 1.220000e-64 257.0
11 TraesCS7D01G438300 chr7A 90.789 152 11 3 3208 3359 471737379 471737231 2.080000e-47 200.0
12 TraesCS7D01G438300 chr7A 89.437 142 12 2 2587 2726 643083611 643083471 3.510000e-40 176.0
13 TraesCS7D01G438300 chr7A 95.455 88 4 0 3338 3425 643080970 643080883 1.280000e-29 141.0
14 TraesCS7D01G438300 chr7A 94.186 86 4 1 2422 2506 643082643 643082558 2.770000e-26 130.0
15 TraesCS7D01G438300 chr7A 84.524 84 13 0 2423 2506 643079114 643079031 2.190000e-12 84.2
16 TraesCS7D01G438300 chr7A 97.297 37 0 1 346 381 643086957 643086921 1.030000e-05 62.1
17 TraesCS7D01G438300 chr7B 91.426 1936 92 29 980 2863 605652243 605650330 0.000000e+00 2588.0
18 TraesCS7D01G438300 chr7B 89.065 567 43 9 2864 3425 605650284 605649732 0.000000e+00 686.0
19 TraesCS7D01G438300 chr7B 86.174 311 24 11 506 813 605652588 605652294 5.520000e-83 318.0
20 TraesCS7D01G438300 chr5D 87.239 431 42 8 3005 3425 434898113 434897686 2.390000e-131 479.0
21 TraesCS7D01G438300 chr5D 87.150 428 42 9 3005 3422 369534060 369534484 1.110000e-129 473.0
22 TraesCS7D01G438300 chr5D 86.775 431 43 9 3005 3425 449435465 449435039 5.180000e-128 468.0
23 TraesCS7D01G438300 chr5D 82.629 213 18 12 2625 2833 434898113 434897916 1.630000e-38 171.0
24 TraesCS7D01G438300 chr5D 82.160 213 19 11 2625 2833 369534060 369534257 7.600000e-37 165.0
25 TraesCS7D01G438300 chr1B 85.043 234 26 3 37 269 15233941 15234166 2.660000e-56 230.0
26 TraesCS7D01G438300 chr1B 84.615 234 29 2 37 269 6249811 6249584 3.440000e-55 226.0
27 TraesCS7D01G438300 chr1B 83.197 244 33 3 23 264 629922878 629922641 2.070000e-52 217.0
28 TraesCS7D01G438300 chr4B 82.937 252 35 3 23 273 37870255 37870499 1.600000e-53 220.0
29 TraesCS7D01G438300 chr4B 91.589 107 8 1 2759 2865 669670494 669670389 2.750000e-31 147.0
30 TraesCS7D01G438300 chr2D 84.188 234 30 5 37 269 582187090 582186863 1.600000e-53 220.0
31 TraesCS7D01G438300 chr2B 84.188 234 30 2 37 269 543196339 543196112 1.600000e-53 220.0
32 TraesCS7D01G438300 chr2B 83.898 236 31 2 37 271 235579455 235579684 5.750000e-53 219.0
33 TraesCS7D01G438300 chr2B 93.458 107 6 1 2759 2865 219710319 219710424 1.270000e-34 158.0
34 TraesCS7D01G438300 chr2B 89.524 105 7 3 3144 3248 40154194 40154094 2.770000e-26 130.0
35 TraesCS7D01G438300 chr6D 84.188 234 28 3 37 269 424671739 424671964 5.750000e-53 219.0
36 TraesCS7D01G438300 chr6A 82.731 249 35 3 23 269 4631261 4631503 7.440000e-52 215.0
37 TraesCS7D01G438300 chr6A 90.654 107 9 1 2759 2865 576844237 576844132 1.280000e-29 141.0
38 TraesCS7D01G438300 chr3A 94.393 107 5 1 2759 2865 298753173 298753068 2.730000e-36 163.0
39 TraesCS7D01G438300 chr3B 92.523 107 7 1 2759 2865 639824563 639824458 5.920000e-33 152.0
40 TraesCS7D01G438300 chr6B 91.429 105 5 3 3144 3248 65620490 65620390 1.280000e-29 141.0
41 TraesCS7D01G438300 chr6B 91.429 105 5 3 3144 3248 65658064 65657964 1.280000e-29 141.0
42 TraesCS7D01G438300 chr6B 95.652 46 1 1 1913 1958 53636486 53636530 4.740000e-09 73.1
43 TraesCS7D01G438300 chr1D 98.551 69 1 0 3354 3422 406100336 406100404 4.640000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G438300 chr7D 557578872 557582296 3424 True 6325.000000 6325 100.000000 1 3425 1 chr7D.!!$R3 3424
1 TraesCS7D01G438300 chr7A 643079031 643086957 7926 True 510.930000 2929 90.092400 346 3425 10 chr7A.!!$R2 3079
2 TraesCS7D01G438300 chr7B 605649732 605652588 2856 True 1197.333333 2588 88.888333 506 3425 3 chr7B.!!$R1 2919

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.040958 CTTTATTCAGCGCCGCCATC 60.041 55.0 4.98 0.00 0.00 3.51 F
282 283 0.103390 GGCGGAAGAGCTCTCCTAAC 59.897 60.0 18.55 11.23 37.29 2.34 F
285 286 0.103390 GGAAGAGCTCTCCTAACGGC 59.897 60.0 18.55 0.00 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2850 1.159713 TGTCTTGTGTTGCAGCTCCG 61.160 55.000 1.17 0.00 0.00 4.63 R
2277 3087 0.530870 CGAAGAAGGATCGCTTCCCC 60.531 60.000 15.99 9.85 46.81 4.81 R
2474 3317 1.005748 GCTGCAAAAAGCCTCACCC 60.006 57.895 0.00 0.00 44.83 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.557942 CATCACAACGGCAAAGCC 57.442 55.556 0.00 0.00 46.75 4.35
28 29 2.355010 GGCAAAGCCCTATGATGTCT 57.645 50.000 0.00 0.00 44.06 3.41
29 30 2.225467 GGCAAAGCCCTATGATGTCTC 58.775 52.381 0.00 0.00 44.06 3.36
30 31 2.225467 GCAAAGCCCTATGATGTCTCC 58.775 52.381 0.00 0.00 0.00 3.71
31 32 2.421952 GCAAAGCCCTATGATGTCTCCA 60.422 50.000 0.00 0.00 0.00 3.86
32 33 3.209410 CAAAGCCCTATGATGTCTCCAC 58.791 50.000 0.00 0.00 0.00 4.02
33 34 2.180946 AGCCCTATGATGTCTCCACA 57.819 50.000 0.00 0.00 36.78 4.17
34 35 2.045524 AGCCCTATGATGTCTCCACAG 58.954 52.381 0.00 0.00 35.41 3.66
35 36 1.071385 GCCCTATGATGTCTCCACAGG 59.929 57.143 0.00 0.00 35.41 4.00
36 37 1.071385 CCCTATGATGTCTCCACAGGC 59.929 57.143 0.00 0.00 35.41 4.85
37 38 1.764723 CCTATGATGTCTCCACAGGCA 59.235 52.381 0.00 0.00 39.08 4.75
38 39 2.484417 CCTATGATGTCTCCACAGGCAC 60.484 54.545 0.00 0.00 36.96 5.01
39 40 0.107993 ATGATGTCTCCACAGGCACG 60.108 55.000 0.00 0.00 36.96 5.34
40 41 2.046892 ATGTCTCCACAGGCACGC 60.047 61.111 0.00 0.00 36.96 5.34
41 42 3.612247 ATGTCTCCACAGGCACGCC 62.612 63.158 0.00 0.00 36.96 5.68
42 43 4.314440 GTCTCCACAGGCACGCCA 62.314 66.667 11.35 0.00 38.92 5.69
43 44 3.321648 TCTCCACAGGCACGCCAT 61.322 61.111 11.35 0.00 38.92 4.40
44 45 2.821366 CTCCACAGGCACGCCATC 60.821 66.667 11.35 0.00 38.92 3.51
45 46 4.408821 TCCACAGGCACGCCATCC 62.409 66.667 11.35 0.00 38.92 3.51
46 47 4.415150 CCACAGGCACGCCATCCT 62.415 66.667 11.35 0.00 38.92 3.24
47 48 2.360350 CACAGGCACGCCATCCTT 60.360 61.111 11.35 0.00 38.92 3.36
48 49 1.078497 CACAGGCACGCCATCCTTA 60.078 57.895 11.35 0.00 38.92 2.69
49 50 1.078426 ACAGGCACGCCATCCTTAC 60.078 57.895 11.35 0.00 38.92 2.34
50 51 1.221840 CAGGCACGCCATCCTTACT 59.778 57.895 11.35 0.00 38.92 2.24
51 52 0.392998 CAGGCACGCCATCCTTACTT 60.393 55.000 11.35 0.00 38.92 2.24
52 53 0.392998 AGGCACGCCATCCTTACTTG 60.393 55.000 11.35 0.00 38.92 3.16
53 54 0.392461 GGCACGCCATCCTTACTTGA 60.392 55.000 2.36 0.00 35.81 3.02
54 55 1.448985 GCACGCCATCCTTACTTGAA 58.551 50.000 0.00 0.00 0.00 2.69
55 56 1.130561 GCACGCCATCCTTACTTGAAC 59.869 52.381 0.00 0.00 0.00 3.18
56 57 1.393539 CACGCCATCCTTACTTGAACG 59.606 52.381 0.00 0.00 0.00 3.95
57 58 1.006832 CGCCATCCTTACTTGAACGG 58.993 55.000 0.00 0.00 0.00 4.44
58 59 1.404986 CGCCATCCTTACTTGAACGGA 60.405 52.381 0.00 0.00 0.00 4.69
59 60 2.007608 GCCATCCTTACTTGAACGGAC 58.992 52.381 0.00 0.00 0.00 4.79
60 61 2.354805 GCCATCCTTACTTGAACGGACT 60.355 50.000 0.00 0.00 0.00 3.85
61 62 3.262420 CCATCCTTACTTGAACGGACTG 58.738 50.000 0.00 0.00 0.00 3.51
62 63 3.262420 CATCCTTACTTGAACGGACTGG 58.738 50.000 0.00 0.00 0.00 4.00
63 64 2.322658 TCCTTACTTGAACGGACTGGT 58.677 47.619 0.00 0.00 0.00 4.00
64 65 2.701951 TCCTTACTTGAACGGACTGGTT 59.298 45.455 0.00 0.00 0.00 3.67
65 66 3.135167 TCCTTACTTGAACGGACTGGTTT 59.865 43.478 0.00 0.00 0.00 3.27
66 67 3.881089 CCTTACTTGAACGGACTGGTTTT 59.119 43.478 0.00 0.00 0.00 2.43
67 68 5.058490 CCTTACTTGAACGGACTGGTTTTA 58.942 41.667 0.00 0.00 0.00 1.52
68 69 5.528320 CCTTACTTGAACGGACTGGTTTTAA 59.472 40.000 0.00 0.00 0.00 1.52
69 70 6.038492 CCTTACTTGAACGGACTGGTTTTAAA 59.962 38.462 0.00 0.00 0.00 1.52
70 71 5.900865 ACTTGAACGGACTGGTTTTAAAA 57.099 34.783 0.00 0.00 0.00 1.52
71 72 6.459670 ACTTGAACGGACTGGTTTTAAAAT 57.540 33.333 3.52 0.00 0.00 1.82
72 73 6.500910 ACTTGAACGGACTGGTTTTAAAATC 58.499 36.000 3.52 3.85 0.00 2.17
73 74 5.441709 TGAACGGACTGGTTTTAAAATCC 57.558 39.130 8.70 8.23 0.00 3.01
74 75 4.888239 TGAACGGACTGGTTTTAAAATCCA 59.112 37.500 15.32 15.88 0.00 3.41
75 76 5.536916 TGAACGGACTGGTTTTAAAATCCAT 59.463 36.000 17.18 7.58 0.00 3.41
76 77 5.385509 ACGGACTGGTTTTAAAATCCATG 57.614 39.130 17.18 14.33 0.00 3.66
77 78 4.173256 CGGACTGGTTTTAAAATCCATGC 58.827 43.478 17.18 13.30 0.00 4.06
78 79 4.503910 GGACTGGTTTTAAAATCCATGCC 58.496 43.478 17.18 16.55 0.00 4.40
79 80 4.503910 GACTGGTTTTAAAATCCATGCCC 58.496 43.478 17.18 8.10 0.00 5.36
80 81 3.906846 ACTGGTTTTAAAATCCATGCCCA 59.093 39.130 17.18 11.35 0.00 5.36
81 82 4.349342 ACTGGTTTTAAAATCCATGCCCAA 59.651 37.500 17.18 0.00 0.00 4.12
82 83 4.646572 TGGTTTTAAAATCCATGCCCAAC 58.353 39.130 8.70 0.00 0.00 3.77
83 84 4.103153 TGGTTTTAAAATCCATGCCCAACA 59.897 37.500 8.70 0.00 0.00 3.33
84 85 5.066593 GGTTTTAAAATCCATGCCCAACAA 58.933 37.500 3.52 0.00 0.00 2.83
85 86 5.709631 GGTTTTAAAATCCATGCCCAACAAT 59.290 36.000 3.52 0.00 0.00 2.71
86 87 6.881602 GGTTTTAAAATCCATGCCCAACAATA 59.118 34.615 3.52 0.00 0.00 1.90
87 88 7.065683 GGTTTTAAAATCCATGCCCAACAATAG 59.934 37.037 3.52 0.00 0.00 1.73
88 89 4.758773 AAAATCCATGCCCAACAATAGG 57.241 40.909 0.00 0.00 0.00 2.57
89 90 3.686227 AATCCATGCCCAACAATAGGA 57.314 42.857 0.00 0.00 33.83 2.94
90 91 2.435372 TCCATGCCCAACAATAGGAC 57.565 50.000 0.00 0.00 0.00 3.85
91 92 1.922447 TCCATGCCCAACAATAGGACT 59.078 47.619 0.00 0.00 0.00 3.85
92 93 2.026641 CCATGCCCAACAATAGGACTG 58.973 52.381 0.00 0.00 0.00 3.51
93 94 2.357050 CCATGCCCAACAATAGGACTGA 60.357 50.000 0.00 0.00 0.00 3.41
94 95 3.559069 CATGCCCAACAATAGGACTGAT 58.441 45.455 0.00 0.00 0.00 2.90
95 96 3.281727 TGCCCAACAATAGGACTGATC 57.718 47.619 0.00 0.00 0.00 2.92
96 97 2.213499 GCCCAACAATAGGACTGATCG 58.787 52.381 0.00 0.00 0.00 3.69
97 98 2.213499 CCCAACAATAGGACTGATCGC 58.787 52.381 0.00 0.00 0.00 4.58
98 99 2.213499 CCAACAATAGGACTGATCGCC 58.787 52.381 0.00 0.00 0.00 5.54
99 100 2.158900 CCAACAATAGGACTGATCGCCT 60.159 50.000 6.79 6.79 38.31 5.52
100 101 3.126831 CAACAATAGGACTGATCGCCTC 58.873 50.000 5.01 0.00 35.73 4.70
101 102 2.388735 ACAATAGGACTGATCGCCTCA 58.611 47.619 5.01 0.00 35.73 3.86
102 103 2.968574 ACAATAGGACTGATCGCCTCAT 59.031 45.455 5.01 0.00 35.73 2.90
103 104 3.006323 ACAATAGGACTGATCGCCTCATC 59.994 47.826 5.01 0.00 35.73 2.92
104 105 1.239347 TAGGACTGATCGCCTCATCG 58.761 55.000 5.01 0.00 35.73 3.84
105 106 1.006805 GGACTGATCGCCTCATCGG 60.007 63.158 0.00 0.00 35.53 4.18
106 107 1.006805 GACTGATCGCCTCATCGGG 60.007 63.158 0.00 0.00 33.90 5.14
107 108 1.455773 ACTGATCGCCTCATCGGGA 60.456 57.895 0.00 0.00 33.90 5.14
108 109 1.043116 ACTGATCGCCTCATCGGGAA 61.043 55.000 0.00 0.00 33.90 3.97
109 110 0.319383 CTGATCGCCTCATCGGGAAG 60.319 60.000 0.00 0.00 32.10 3.46
110 111 1.005630 GATCGCCTCATCGGGAAGG 60.006 63.158 0.00 0.00 0.00 3.46
111 112 2.441822 GATCGCCTCATCGGGAAGGG 62.442 65.000 0.00 0.00 0.00 3.95
112 113 3.470888 CGCCTCATCGGGAAGGGT 61.471 66.667 0.00 0.00 0.00 4.34
113 114 2.506472 GCCTCATCGGGAAGGGTC 59.494 66.667 0.00 0.00 0.00 4.46
114 115 2.066999 GCCTCATCGGGAAGGGTCT 61.067 63.158 0.00 0.00 0.00 3.85
115 116 1.826024 CCTCATCGGGAAGGGTCTG 59.174 63.158 0.00 0.00 0.00 3.51
116 117 0.687757 CCTCATCGGGAAGGGTCTGA 60.688 60.000 0.00 0.00 0.00 3.27
117 118 1.195115 CTCATCGGGAAGGGTCTGAA 58.805 55.000 0.00 0.00 0.00 3.02
118 119 1.765314 CTCATCGGGAAGGGTCTGAAT 59.235 52.381 0.00 0.00 0.00 2.57
119 120 2.965831 CTCATCGGGAAGGGTCTGAATA 59.034 50.000 0.00 0.00 0.00 1.75
120 121 3.380393 TCATCGGGAAGGGTCTGAATAA 58.620 45.455 0.00 0.00 0.00 1.40
121 122 3.973973 TCATCGGGAAGGGTCTGAATAAT 59.026 43.478 0.00 0.00 0.00 1.28
122 123 4.040461 TCATCGGGAAGGGTCTGAATAATC 59.960 45.833 0.00 0.00 0.00 1.75
123 124 3.654273 TCGGGAAGGGTCTGAATAATCT 58.346 45.455 0.00 0.00 0.00 2.40
124 125 4.037927 TCGGGAAGGGTCTGAATAATCTT 58.962 43.478 0.00 0.00 0.00 2.40
125 126 4.473559 TCGGGAAGGGTCTGAATAATCTTT 59.526 41.667 0.00 0.00 0.00 2.52
126 127 5.664006 TCGGGAAGGGTCTGAATAATCTTTA 59.336 40.000 0.00 0.00 0.00 1.85
127 128 6.329197 TCGGGAAGGGTCTGAATAATCTTTAT 59.671 38.462 0.00 0.00 0.00 1.40
128 129 6.998673 CGGGAAGGGTCTGAATAATCTTTATT 59.001 38.462 0.00 0.00 0.00 1.40
129 130 7.173390 CGGGAAGGGTCTGAATAATCTTTATTC 59.827 40.741 11.35 11.35 35.20 1.75
130 131 7.998964 GGGAAGGGTCTGAATAATCTTTATTCA 59.001 37.037 17.28 17.28 40.43 2.57
136 137 5.342806 TGAATAATCTTTATTCAGCGCCG 57.657 39.130 15.29 0.00 38.55 6.46
137 138 3.813529 ATAATCTTTATTCAGCGCCGC 57.186 42.857 2.29 0.00 0.00 6.53
138 139 0.663153 AATCTTTATTCAGCGCCGCC 59.337 50.000 4.98 0.00 0.00 6.13
139 140 0.463654 ATCTTTATTCAGCGCCGCCA 60.464 50.000 4.98 0.00 0.00 5.69
140 141 0.463654 TCTTTATTCAGCGCCGCCAT 60.464 50.000 4.98 0.00 0.00 4.40
141 142 0.040958 CTTTATTCAGCGCCGCCATC 60.041 55.000 4.98 0.00 0.00 3.51
142 143 1.771073 TTTATTCAGCGCCGCCATCG 61.771 55.000 4.98 0.00 0.00 3.84
143 144 2.916502 TTATTCAGCGCCGCCATCGT 62.917 55.000 4.98 0.00 0.00 3.73
149 150 3.630148 CGCCGCCATCGTCATCAC 61.630 66.667 0.00 0.00 0.00 3.06
150 151 3.272334 GCCGCCATCGTCATCACC 61.272 66.667 0.00 0.00 0.00 4.02
151 152 2.961721 CCGCCATCGTCATCACCG 60.962 66.667 0.00 0.00 0.00 4.94
152 153 3.630148 CGCCATCGTCATCACCGC 61.630 66.667 0.00 0.00 0.00 5.68
153 154 3.272334 GCCATCGTCATCACCGCC 61.272 66.667 0.00 0.00 0.00 6.13
154 155 2.961721 CCATCGTCATCACCGCCG 60.962 66.667 0.00 0.00 0.00 6.46
155 156 3.630148 CATCGTCATCACCGCCGC 61.630 66.667 0.00 0.00 0.00 6.53
156 157 4.891727 ATCGTCATCACCGCCGCC 62.892 66.667 0.00 0.00 0.00 6.13
160 161 4.812476 TCATCACCGCCGCCGAAG 62.812 66.667 0.00 0.00 36.29 3.79
162 163 4.814294 ATCACCGCCGCCGAAGTC 62.814 66.667 0.00 0.00 36.29 3.01
166 167 4.735132 CCGCCGCCGAAGTCAAGA 62.735 66.667 0.00 0.00 36.29 3.02
167 168 3.479269 CGCCGCCGAAGTCAAGAC 61.479 66.667 0.00 0.00 36.29 3.01
168 169 3.479269 GCCGCCGAAGTCAAGACG 61.479 66.667 0.00 0.00 36.20 4.18
169 170 2.257371 CCGCCGAAGTCAAGACGA 59.743 61.111 0.00 0.00 36.20 4.20
170 171 1.153823 CCGCCGAAGTCAAGACGAT 60.154 57.895 0.00 0.00 36.20 3.73
171 172 1.140407 CCGCCGAAGTCAAGACGATC 61.140 60.000 0.00 0.00 36.20 3.69
172 173 0.456142 CGCCGAAGTCAAGACGATCA 60.456 55.000 0.00 0.00 36.20 2.92
173 174 1.710013 GCCGAAGTCAAGACGATCAA 58.290 50.000 0.00 0.00 36.20 2.57
174 175 1.390463 GCCGAAGTCAAGACGATCAAC 59.610 52.381 0.00 0.00 36.20 3.18
175 176 2.672714 CCGAAGTCAAGACGATCAACA 58.327 47.619 0.00 0.00 36.20 3.33
176 177 3.057019 CCGAAGTCAAGACGATCAACAA 58.943 45.455 0.00 0.00 36.20 2.83
177 178 3.120991 CCGAAGTCAAGACGATCAACAAC 60.121 47.826 0.00 0.00 36.20 3.32
178 179 3.120991 CGAAGTCAAGACGATCAACAACC 60.121 47.826 0.00 0.00 36.20 3.77
179 180 3.753294 AGTCAAGACGATCAACAACCT 57.247 42.857 0.00 0.00 36.20 3.50
180 181 4.866508 AGTCAAGACGATCAACAACCTA 57.133 40.909 0.00 0.00 36.20 3.08
181 182 5.209818 AGTCAAGACGATCAACAACCTAA 57.790 39.130 0.00 0.00 36.20 2.69
182 183 5.607477 AGTCAAGACGATCAACAACCTAAA 58.393 37.500 0.00 0.00 36.20 1.85
183 184 6.053005 AGTCAAGACGATCAACAACCTAAAA 58.947 36.000 0.00 0.00 36.20 1.52
184 185 6.540914 AGTCAAGACGATCAACAACCTAAAAA 59.459 34.615 0.00 0.00 36.20 1.94
185 186 6.631636 GTCAAGACGATCAACAACCTAAAAAC 59.368 38.462 0.00 0.00 0.00 2.43
186 187 5.684550 AGACGATCAACAACCTAAAAACC 57.315 39.130 0.00 0.00 0.00 3.27
187 188 5.374071 AGACGATCAACAACCTAAAAACCT 58.626 37.500 0.00 0.00 0.00 3.50
188 189 6.527423 AGACGATCAACAACCTAAAAACCTA 58.473 36.000 0.00 0.00 0.00 3.08
189 190 6.649557 AGACGATCAACAACCTAAAAACCTAG 59.350 38.462 0.00 0.00 0.00 3.02
190 191 6.527423 ACGATCAACAACCTAAAAACCTAGA 58.473 36.000 0.00 0.00 0.00 2.43
191 192 6.426025 ACGATCAACAACCTAAAAACCTAGAC 59.574 38.462 0.00 0.00 0.00 2.59
192 193 6.649557 CGATCAACAACCTAAAAACCTAGACT 59.350 38.462 0.00 0.00 0.00 3.24
193 194 7.816031 CGATCAACAACCTAAAAACCTAGACTA 59.184 37.037 0.00 0.00 0.00 2.59
194 195 8.843885 ATCAACAACCTAAAAACCTAGACTAC 57.156 34.615 0.00 0.00 0.00 2.73
195 196 6.925165 TCAACAACCTAAAAACCTAGACTACG 59.075 38.462 0.00 0.00 0.00 3.51
196 197 6.655078 ACAACCTAAAAACCTAGACTACGA 57.345 37.500 0.00 0.00 0.00 3.43
197 198 6.685657 ACAACCTAAAAACCTAGACTACGAG 58.314 40.000 0.00 0.00 0.00 4.18
198 199 6.491403 ACAACCTAAAAACCTAGACTACGAGA 59.509 38.462 0.00 0.00 0.00 4.04
199 200 6.756299 ACCTAAAAACCTAGACTACGAGAG 57.244 41.667 0.00 0.00 0.00 3.20
200 201 5.125257 ACCTAAAAACCTAGACTACGAGAGC 59.875 44.000 0.00 0.00 0.00 4.09
201 202 4.453177 AAAAACCTAGACTACGAGAGCC 57.547 45.455 0.00 0.00 0.00 4.70
202 203 3.369242 AAACCTAGACTACGAGAGCCT 57.631 47.619 0.00 0.00 0.00 4.58
203 204 4.500499 AAACCTAGACTACGAGAGCCTA 57.500 45.455 0.00 0.00 0.00 3.93
204 205 4.500499 AACCTAGACTACGAGAGCCTAA 57.500 45.455 0.00 0.00 0.00 2.69
205 206 4.500499 ACCTAGACTACGAGAGCCTAAA 57.500 45.455 0.00 0.00 0.00 1.85
206 207 4.853007 ACCTAGACTACGAGAGCCTAAAA 58.147 43.478 0.00 0.00 0.00 1.52
207 208 4.883006 ACCTAGACTACGAGAGCCTAAAAG 59.117 45.833 0.00 0.00 0.00 2.27
208 209 3.786516 AGACTACGAGAGCCTAAAAGC 57.213 47.619 0.00 0.00 0.00 3.51
209 210 2.097791 AGACTACGAGAGCCTAAAAGCG 59.902 50.000 0.00 0.00 38.01 4.68
210 211 2.089980 ACTACGAGAGCCTAAAAGCGA 58.910 47.619 0.00 0.00 38.01 4.93
211 212 2.688958 ACTACGAGAGCCTAAAAGCGAT 59.311 45.455 0.00 0.00 38.01 4.58
212 213 2.211353 ACGAGAGCCTAAAAGCGATC 57.789 50.000 0.00 0.00 38.01 3.69
213 214 1.202428 ACGAGAGCCTAAAAGCGATCC 60.202 52.381 0.00 0.00 38.01 3.36
214 215 1.202417 CGAGAGCCTAAAAGCGATCCA 60.202 52.381 0.00 0.00 38.01 3.41
215 216 2.205911 GAGAGCCTAAAAGCGATCCAC 58.794 52.381 0.00 0.00 38.01 4.02
216 217 1.555075 AGAGCCTAAAAGCGATCCACA 59.445 47.619 0.00 0.00 38.01 4.17
217 218 1.666189 GAGCCTAAAAGCGATCCACAC 59.334 52.381 0.00 0.00 38.01 3.82
218 219 0.373716 GCCTAAAAGCGATCCACACG 59.626 55.000 0.00 0.00 0.00 4.49
219 220 1.722011 CCTAAAAGCGATCCACACGT 58.278 50.000 0.00 0.00 0.00 4.49
220 221 1.393539 CCTAAAAGCGATCCACACGTG 59.606 52.381 15.48 15.48 0.00 4.49
221 222 2.066262 CTAAAAGCGATCCACACGTGT 58.934 47.619 17.22 17.22 0.00 4.49
222 223 0.586319 AAAAGCGATCCACACGTGTG 59.414 50.000 36.13 36.13 45.23 3.82
231 232 4.238385 ACACGTGTGAATCCGACG 57.762 55.556 22.71 0.00 39.03 5.12
232 233 1.655885 ACACGTGTGAATCCGACGA 59.344 52.632 22.71 0.00 36.90 4.20
233 234 0.242825 ACACGTGTGAATCCGACGAT 59.757 50.000 22.71 0.00 36.90 3.73
234 235 0.914551 CACGTGTGAATCCGACGATC 59.085 55.000 7.58 0.00 36.90 3.69
235 236 0.179145 ACGTGTGAATCCGACGATCC 60.179 55.000 7.93 0.00 36.90 3.36
236 237 0.870307 CGTGTGAATCCGACGATCCC 60.870 60.000 0.00 0.00 35.05 3.85
237 238 0.529992 GTGTGAATCCGACGATCCCC 60.530 60.000 0.00 0.00 0.00 4.81
238 239 1.069258 GTGAATCCGACGATCCCCC 59.931 63.158 0.00 0.00 0.00 5.40
239 240 1.075525 TGAATCCGACGATCCCCCT 60.076 57.895 0.00 0.00 0.00 4.79
240 241 1.113517 TGAATCCGACGATCCCCCTC 61.114 60.000 0.00 0.00 0.00 4.30
241 242 1.075525 AATCCGACGATCCCCCTCA 60.076 57.895 0.00 0.00 0.00 3.86
242 243 1.400530 AATCCGACGATCCCCCTCAC 61.401 60.000 0.00 0.00 0.00 3.51
243 244 3.537874 CCGACGATCCCCCTCACC 61.538 72.222 0.00 0.00 0.00 4.02
244 245 2.758327 CGACGATCCCCCTCACCA 60.758 66.667 0.00 0.00 0.00 4.17
245 246 2.901042 GACGATCCCCCTCACCAC 59.099 66.667 0.00 0.00 0.00 4.16
246 247 2.687566 ACGATCCCCCTCACCACC 60.688 66.667 0.00 0.00 0.00 4.61
247 248 3.849951 CGATCCCCCTCACCACCG 61.850 72.222 0.00 0.00 0.00 4.94
248 249 3.480133 GATCCCCCTCACCACCGG 61.480 72.222 0.00 0.00 0.00 5.28
255 256 4.308458 CTCACCACCGGCGACCAA 62.308 66.667 9.30 0.00 0.00 3.67
256 257 4.308458 TCACCACCGGCGACCAAG 62.308 66.667 9.30 0.00 0.00 3.61
269 270 4.367023 CCAAGGTCGTCGGCGGAA 62.367 66.667 10.62 0.00 38.89 4.30
270 271 2.809601 CAAGGTCGTCGGCGGAAG 60.810 66.667 10.62 0.00 38.89 3.46
271 272 2.987547 AAGGTCGTCGGCGGAAGA 60.988 61.111 10.62 5.82 38.89 2.87
272 273 2.991076 AAGGTCGTCGGCGGAAGAG 61.991 63.158 10.62 0.00 38.89 2.85
274 275 4.117661 GTCGTCGGCGGAAGAGCT 62.118 66.667 10.62 0.00 38.89 4.09
275 276 3.812019 TCGTCGGCGGAAGAGCTC 61.812 66.667 10.62 5.27 38.89 4.09
276 277 3.816524 CGTCGGCGGAAGAGCTCT 61.817 66.667 11.45 11.45 37.29 4.09
277 278 2.103340 GTCGGCGGAAGAGCTCTC 59.897 66.667 18.55 10.50 37.29 3.20
278 279 3.141488 TCGGCGGAAGAGCTCTCC 61.141 66.667 18.55 17.91 37.29 3.71
279 280 3.144193 CGGCGGAAGAGCTCTCCT 61.144 66.667 18.55 1.10 37.29 3.69
280 281 1.824329 CGGCGGAAGAGCTCTCCTA 60.824 63.158 18.55 0.00 37.29 2.94
281 282 1.384989 CGGCGGAAGAGCTCTCCTAA 61.385 60.000 18.55 0.00 37.29 2.69
282 283 0.103390 GGCGGAAGAGCTCTCCTAAC 59.897 60.000 18.55 11.23 37.29 2.34
283 284 0.248702 GCGGAAGAGCTCTCCTAACG 60.249 60.000 18.55 17.05 0.00 3.18
284 285 0.382515 CGGAAGAGCTCTCCTAACGG 59.617 60.000 18.55 7.24 0.00 4.44
285 286 0.103390 GGAAGAGCTCTCCTAACGGC 59.897 60.000 18.55 0.00 0.00 5.68
286 287 0.248702 GAAGAGCTCTCCTAACGGCG 60.249 60.000 18.55 4.80 0.00 6.46
287 288 1.668101 AAGAGCTCTCCTAACGGCGG 61.668 60.000 18.55 0.00 0.00 6.13
288 289 3.776659 GAGCTCTCCTAACGGCGGC 62.777 68.421 13.24 0.00 0.00 6.53
289 290 3.839432 GCTCTCCTAACGGCGGCT 61.839 66.667 13.24 0.00 0.00 5.52
290 291 2.105128 CTCTCCTAACGGCGGCTG 59.895 66.667 13.24 7.39 0.00 4.85
291 292 4.143333 TCTCCTAACGGCGGCTGC 62.143 66.667 13.24 9.72 41.71 5.25
292 293 4.148825 CTCCTAACGGCGGCTGCT 62.149 66.667 18.85 0.00 42.25 4.24
293 294 3.665675 CTCCTAACGGCGGCTGCTT 62.666 63.158 18.85 7.41 42.25 3.91
294 295 3.499737 CCTAACGGCGGCTGCTTG 61.500 66.667 18.85 13.00 42.25 4.01
295 296 4.166011 CTAACGGCGGCTGCTTGC 62.166 66.667 18.85 4.13 42.25 4.01
301 302 3.934684 GCGGCTGCTTGCGAGATC 61.935 66.667 11.21 0.00 44.05 2.75
302 303 3.624300 CGGCTGCTTGCGAGATCG 61.624 66.667 4.70 0.00 44.05 3.69
315 316 1.849219 CGAGATCGCCTTCTTTCTTCG 59.151 52.381 0.00 0.00 0.00 3.79
316 317 2.197577 GAGATCGCCTTCTTTCTTCGG 58.802 52.381 0.00 0.00 0.00 4.30
317 318 1.134670 AGATCGCCTTCTTTCTTCGGG 60.135 52.381 0.00 0.00 0.00 5.14
318 319 0.613777 ATCGCCTTCTTTCTTCGGGT 59.386 50.000 0.00 0.00 0.00 5.28
319 320 0.320421 TCGCCTTCTTTCTTCGGGTG 60.320 55.000 0.00 0.00 0.00 4.61
320 321 1.876664 GCCTTCTTTCTTCGGGTGC 59.123 57.895 0.00 0.00 0.00 5.01
321 322 0.889186 GCCTTCTTTCTTCGGGTGCA 60.889 55.000 0.00 0.00 0.00 4.57
322 323 1.604604 CCTTCTTTCTTCGGGTGCAA 58.395 50.000 0.00 0.00 0.00 4.08
323 324 1.537202 CCTTCTTTCTTCGGGTGCAAG 59.463 52.381 0.00 0.00 0.00 4.01
324 325 2.494059 CTTCTTTCTTCGGGTGCAAGA 58.506 47.619 0.00 0.00 0.00 3.02
325 326 2.631160 TCTTTCTTCGGGTGCAAGAA 57.369 45.000 0.00 0.00 37.96 2.52
326 327 2.925724 TCTTTCTTCGGGTGCAAGAAA 58.074 42.857 9.53 9.53 44.12 2.52
328 329 2.631160 TTCTTCGGGTGCAAGAAAGA 57.369 45.000 0.00 0.00 37.01 2.52
329 330 2.631160 TCTTCGGGTGCAAGAAAGAA 57.369 45.000 0.00 0.00 0.00 2.52
330 331 2.925724 TCTTCGGGTGCAAGAAAGAAA 58.074 42.857 0.00 0.00 0.00 2.52
331 332 2.616842 TCTTCGGGTGCAAGAAAGAAAC 59.383 45.455 0.00 0.00 0.00 2.78
332 333 2.341846 TCGGGTGCAAGAAAGAAACT 57.658 45.000 0.00 0.00 0.00 2.66
333 334 3.478857 TCGGGTGCAAGAAAGAAACTA 57.521 42.857 0.00 0.00 0.00 2.24
334 335 4.015872 TCGGGTGCAAGAAAGAAACTAT 57.984 40.909 0.00 0.00 0.00 2.12
335 336 5.155278 TCGGGTGCAAGAAAGAAACTATA 57.845 39.130 0.00 0.00 0.00 1.31
336 337 4.933400 TCGGGTGCAAGAAAGAAACTATAC 59.067 41.667 0.00 0.00 0.00 1.47
337 338 4.201685 CGGGTGCAAGAAAGAAACTATACG 60.202 45.833 0.00 0.00 0.00 3.06
338 339 4.694037 GGGTGCAAGAAAGAAACTATACGT 59.306 41.667 0.00 0.00 0.00 3.57
339 340 5.180680 GGGTGCAAGAAAGAAACTATACGTT 59.819 40.000 0.00 0.00 37.47 3.99
340 341 6.304882 GGTGCAAGAAAGAAACTATACGTTC 58.695 40.000 0.00 0.00 33.90 3.95
341 342 6.304882 GTGCAAGAAAGAAACTATACGTTCC 58.695 40.000 0.00 0.00 33.90 3.62
342 343 6.147328 GTGCAAGAAAGAAACTATACGTTCCT 59.853 38.462 0.00 0.00 33.90 3.36
343 344 7.330208 GTGCAAGAAAGAAACTATACGTTCCTA 59.670 37.037 0.00 0.00 33.90 2.94
344 345 8.038944 TGCAAGAAAGAAACTATACGTTCCTAT 58.961 33.333 0.00 0.00 33.90 2.57
377 378 6.923012 TCACCTGTATTCATTGTTGGATTTG 58.077 36.000 0.00 0.00 0.00 2.32
378 379 6.493115 TCACCTGTATTCATTGTTGGATTTGT 59.507 34.615 0.00 0.00 0.00 2.83
382 383 9.054922 CCTGTATTCATTGTTGGATTTGTTTTT 57.945 29.630 0.00 0.00 0.00 1.94
386 387 8.655651 ATTCATTGTTGGATTTGTTTTTACGT 57.344 26.923 0.00 0.00 0.00 3.57
387 388 9.751542 ATTCATTGTTGGATTTGTTTTTACGTA 57.248 25.926 0.00 0.00 0.00 3.57
388 389 8.563289 TCATTGTTGGATTTGTTTTTACGTAC 57.437 30.769 0.00 0.00 0.00 3.67
389 390 8.407064 TCATTGTTGGATTTGTTTTTACGTACT 58.593 29.630 0.00 0.00 0.00 2.73
390 391 8.687301 CATTGTTGGATTTGTTTTTACGTACTC 58.313 33.333 0.00 0.00 0.00 2.59
391 392 6.727215 TGTTGGATTTGTTTTTACGTACTCC 58.273 36.000 0.00 0.00 0.00 3.85
392 393 6.318144 TGTTGGATTTGTTTTTACGTACTCCA 59.682 34.615 0.00 0.00 0.00 3.86
393 394 7.013464 TGTTGGATTTGTTTTTACGTACTCCAT 59.987 33.333 0.00 0.00 30.87 3.41
394 395 7.136289 TGGATTTGTTTTTACGTACTCCATC 57.864 36.000 0.00 0.00 0.00 3.51
395 396 6.938030 TGGATTTGTTTTTACGTACTCCATCT 59.062 34.615 0.00 0.00 0.00 2.90
396 397 7.094975 TGGATTTGTTTTTACGTACTCCATCTG 60.095 37.037 0.00 0.00 0.00 2.90
397 398 7.094933 GGATTTGTTTTTACGTACTCCATCTGT 60.095 37.037 0.00 0.00 0.00 3.41
398 399 8.836268 ATTTGTTTTTACGTACTCCATCTGTA 57.164 30.769 0.00 0.00 0.00 2.74
399 400 8.659925 TTTGTTTTTACGTACTCCATCTGTAA 57.340 30.769 0.00 0.00 0.00 2.41
400 401 8.659925 TTGTTTTTACGTACTCCATCTGTAAA 57.340 30.769 0.00 0.00 34.29 2.01
401 402 8.075593 TGTTTTTACGTACTCCATCTGTAAAC 57.924 34.615 0.00 0.00 35.45 2.01
402 403 7.710044 TGTTTTTACGTACTCCATCTGTAAACA 59.290 33.333 0.00 0.00 35.45 2.83
403 404 8.550376 GTTTTTACGTACTCCATCTGTAAACAA 58.450 33.333 0.00 0.00 35.45 2.83
404 405 8.659925 TTTTACGTACTCCATCTGTAAACAAA 57.340 30.769 0.00 0.00 35.45 2.83
405 406 8.836268 TTTACGTACTCCATCTGTAAACAAAT 57.164 30.769 0.00 0.00 31.97 2.32
406 407 9.926158 TTTACGTACTCCATCTGTAAACAAATA 57.074 29.630 0.00 0.00 31.97 1.40
407 408 7.823149 ACGTACTCCATCTGTAAACAAATAC 57.177 36.000 0.00 0.00 0.00 1.89
408 409 7.609056 ACGTACTCCATCTGTAAACAAATACT 58.391 34.615 0.00 0.00 0.00 2.12
409 410 7.758528 ACGTACTCCATCTGTAAACAAATACTC 59.241 37.037 0.00 0.00 0.00 2.59
410 411 7.222224 CGTACTCCATCTGTAAACAAATACTCC 59.778 40.741 0.00 0.00 0.00 3.85
411 412 6.106673 ACTCCATCTGTAAACAAATACTCCG 58.893 40.000 0.00 0.00 0.00 4.63
412 413 6.045072 TCCATCTGTAAACAAATACTCCGT 57.955 37.500 0.00 0.00 0.00 4.69
413 414 5.872617 TCCATCTGTAAACAAATACTCCGTG 59.127 40.000 0.00 0.00 0.00 4.94
414 415 5.872617 CCATCTGTAAACAAATACTCCGTGA 59.127 40.000 0.00 0.00 0.00 4.35
415 416 6.538742 CCATCTGTAAACAAATACTCCGTGAT 59.461 38.462 0.00 0.00 0.00 3.06
416 417 7.254455 CCATCTGTAAACAAATACTCCGTGATC 60.254 40.741 0.00 0.00 0.00 2.92
417 418 6.103997 TCTGTAAACAAATACTCCGTGATCC 58.896 40.000 0.00 0.00 0.00 3.36
418 419 6.045072 TGTAAACAAATACTCCGTGATCCT 57.955 37.500 0.00 0.00 0.00 3.24
419 420 7.123098 TCTGTAAACAAATACTCCGTGATCCTA 59.877 37.037 0.00 0.00 0.00 2.94
420 421 7.613585 TGTAAACAAATACTCCGTGATCCTAA 58.386 34.615 0.00 0.00 0.00 2.69
421 422 8.095792 TGTAAACAAATACTCCGTGATCCTAAA 58.904 33.333 0.00 0.00 0.00 1.85
422 423 7.611213 AAACAAATACTCCGTGATCCTAAAG 57.389 36.000 0.00 0.00 0.00 1.85
423 424 5.671493 ACAAATACTCCGTGATCCTAAAGG 58.329 41.667 0.00 0.00 0.00 3.11
452 453 3.693807 TCCGTGAACATGGAGTAGTAGT 58.306 45.455 11.19 0.00 41.36 2.73
454 455 4.525487 TCCGTGAACATGGAGTAGTAGTTT 59.475 41.667 11.19 0.00 41.36 2.66
491 506 8.997621 ACGTATGTGAAAAGTAATATCTGTGT 57.002 30.769 0.00 0.00 0.00 3.72
496 511 8.683550 TGTGAAAAGTAATATCTGTGTAGACG 57.316 34.615 0.00 0.00 35.34 4.18
497 512 8.517056 TGTGAAAAGTAATATCTGTGTAGACGA 58.483 33.333 0.00 0.00 35.34 4.20
498 513 9.350357 GTGAAAAGTAATATCTGTGTAGACGAA 57.650 33.333 0.00 0.00 35.34 3.85
499 514 9.917129 TGAAAAGTAATATCTGTGTAGACGAAA 57.083 29.630 0.00 0.00 35.34 3.46
502 517 7.988904 AGTAATATCTGTGTAGACGAAAAGC 57.011 36.000 0.00 0.00 35.34 3.51
504 519 2.060326 TCTGTGTAGACGAAAAGCGG 57.940 50.000 0.00 0.00 46.49 5.52
524 539 2.352960 GGTCTTTTCTCCGCATCATGTC 59.647 50.000 0.00 0.00 0.00 3.06
525 540 3.002791 GTCTTTTCTCCGCATCATGTCA 58.997 45.455 0.00 0.00 0.00 3.58
526 541 3.624861 GTCTTTTCTCCGCATCATGTCAT 59.375 43.478 0.00 0.00 0.00 3.06
527 542 3.624410 TCTTTTCTCCGCATCATGTCATG 59.376 43.478 6.47 6.47 0.00 3.07
528 543 2.696989 TTCTCCGCATCATGTCATGT 57.303 45.000 12.54 0.00 0.00 3.21
529 544 1.944032 TCTCCGCATCATGTCATGTG 58.056 50.000 12.54 10.86 34.55 3.21
530 545 1.481772 TCTCCGCATCATGTCATGTGA 59.518 47.619 12.54 0.00 36.53 3.58
547 562 2.023673 GTGAATGGGGCGAATGATGAA 58.976 47.619 0.00 0.00 0.00 2.57
549 564 1.610522 GAATGGGGCGAATGATGAAGG 59.389 52.381 0.00 0.00 0.00 3.46
550 565 0.825010 ATGGGGCGAATGATGAAGGC 60.825 55.000 0.00 0.00 0.00 4.35
551 566 1.453745 GGGGCGAATGATGAAGGCA 60.454 57.895 0.00 0.00 0.00 4.75
552 567 0.825010 GGGGCGAATGATGAAGGCAT 60.825 55.000 0.00 0.00 37.47 4.40
553 568 0.313043 GGGCGAATGATGAAGGCATG 59.687 55.000 0.00 0.00 34.11 4.06
554 569 1.027357 GGCGAATGATGAAGGCATGT 58.973 50.000 0.00 0.00 34.11 3.21
555 570 1.002033 GGCGAATGATGAAGGCATGTC 60.002 52.381 0.00 0.00 34.11 3.06
556 571 1.672363 GCGAATGATGAAGGCATGTCA 59.328 47.619 0.00 0.00 34.11 3.58
557 572 2.540361 GCGAATGATGAAGGCATGTCAC 60.540 50.000 0.00 0.00 34.11 3.67
558 573 2.941064 CGAATGATGAAGGCATGTCACT 59.059 45.455 0.00 0.00 34.11 3.41
608 630 3.080319 GTGGACCTACTCAACGTCTAGT 58.920 50.000 7.76 7.76 0.00 2.57
623 645 3.854240 CGTCTAGTGAACGTCGACTACTA 59.146 47.826 14.70 14.29 0.00 1.82
777 1534 0.321346 CACCCCCATTTCAAACCAGC 59.679 55.000 0.00 0.00 0.00 4.85
778 1535 0.105246 ACCCCCATTTCAAACCAGCA 60.105 50.000 0.00 0.00 0.00 4.41
781 1538 1.969923 CCCCATTTCAAACCAGCAGAA 59.030 47.619 0.00 0.00 0.00 3.02
783 1540 2.611224 CCCATTTCAAACCAGCAGAAGC 60.611 50.000 0.00 0.00 42.56 3.86
811 1568 3.498614 ATCCCCTCATAATCCTCCGAT 57.501 47.619 0.00 0.00 0.00 4.18
814 1571 1.478510 CCCTCATAATCCTCCGATCCG 59.521 57.143 0.00 0.00 0.00 4.18
815 1572 1.134965 CCTCATAATCCTCCGATCCGC 60.135 57.143 0.00 0.00 0.00 5.54
850 1607 1.140852 CCCTAATCACGCAGGAATCCA 59.859 52.381 0.61 0.00 33.42 3.41
860 1617 2.666526 GGAATCCATCCGCTCGCC 60.667 66.667 0.00 0.00 38.79 5.54
861 1618 2.423446 GAATCCATCCGCTCGCCT 59.577 61.111 0.00 0.00 0.00 5.52
862 1619 1.666234 GAATCCATCCGCTCGCCTC 60.666 63.158 0.00 0.00 0.00 4.70
865 1622 3.933722 CCATCCGCTCGCCTCCAT 61.934 66.667 0.00 0.00 0.00 3.41
866 1623 2.356793 CATCCGCTCGCCTCCATC 60.357 66.667 0.00 0.00 0.00 3.51
867 1624 2.839632 ATCCGCTCGCCTCCATCA 60.840 61.111 0.00 0.00 0.00 3.07
868 1625 2.434843 ATCCGCTCGCCTCCATCAA 61.435 57.895 0.00 0.00 0.00 2.57
871 1628 1.227350 CGCTCGCCTCCATCAATCA 60.227 57.895 0.00 0.00 0.00 2.57
873 1630 1.602311 GCTCGCCTCCATCAATCAAT 58.398 50.000 0.00 0.00 0.00 2.57
876 1633 0.870393 CGCCTCCATCAATCAATCCG 59.130 55.000 0.00 0.00 0.00 4.18
893 1651 3.152400 GTCCAGGTACCCGCCGAT 61.152 66.667 8.74 0.00 0.00 4.18
909 1667 1.821061 CGATCCCTCCCCAATCTCGG 61.821 65.000 0.00 0.00 0.00 4.63
910 1668 0.764752 GATCCCTCCCCAATCTCGGT 60.765 60.000 0.00 0.00 0.00 4.69
912 1670 1.383248 CCCTCCCCAATCTCGGTCT 60.383 63.158 0.00 0.00 0.00 3.85
949 1711 1.008995 GCGTCGCCTCTGATCTCTC 60.009 63.158 5.75 0.00 0.00 3.20
950 1712 1.278337 CGTCGCCTCTGATCTCTCG 59.722 63.158 0.00 0.00 0.00 4.04
1206 1995 3.206211 GATCCTGCGCCTCTCCTCG 62.206 68.421 4.18 0.00 0.00 4.63
1488 2277 4.966787 GCGAACCCCACCAAGGCA 62.967 66.667 0.00 0.00 35.39 4.75
1709 2510 2.187946 CATCCGCGAAGAAGGGCT 59.812 61.111 8.23 0.00 0.00 5.19
1966 2767 1.152860 ATGAACCACACCGGCAACA 60.153 52.632 0.00 0.00 39.03 3.33
2126 2936 1.904032 CAGGCCAGAAGGAGGAGAC 59.096 63.158 5.01 0.00 36.89 3.36
2130 2940 0.251634 GCCAGAAGGAGGAGACCAAG 59.748 60.000 0.00 0.00 36.89 3.61
2224 3034 2.615227 GATCAGGACCATGCCGCCTT 62.615 60.000 0.00 0.00 0.00 4.35
2385 3198 2.350514 GAGGAGGCAACAGCAGCT 59.649 61.111 0.00 0.00 41.41 4.24
2510 3354 3.179830 CAGCGTGTTACATAGTCAGTCC 58.820 50.000 0.00 0.00 0.00 3.85
2511 3355 2.159421 AGCGTGTTACATAGTCAGTCCG 60.159 50.000 0.00 0.00 0.00 4.79
2512 3356 2.415090 GCGTGTTACATAGTCAGTCCGT 60.415 50.000 0.00 0.00 0.00 4.69
2513 3357 3.423571 CGTGTTACATAGTCAGTCCGTC 58.576 50.000 0.00 0.00 0.00 4.79
2641 3491 2.939103 GTCAGTCAGTGTGCTCTGTTTT 59.061 45.455 0.00 0.00 36.85 2.43
2642 3492 4.119862 GTCAGTCAGTGTGCTCTGTTTTA 58.880 43.478 0.00 0.00 36.85 1.52
2666 3516 4.833938 TGTAAGTAGTGTCATGGTGTGGTA 59.166 41.667 0.00 0.00 0.00 3.25
2692 3542 2.926778 CCCTTTTGGTTGGAAATGCA 57.073 45.000 0.00 0.00 38.10 3.96
2735 3585 3.022607 AGCTTGCTGAAGTTGAAATGC 57.977 42.857 0.00 0.00 0.00 3.56
2742 3592 4.099881 TGCTGAAGTTGAAATGCTTTCCTT 59.900 37.500 6.29 4.14 38.90 3.36
2744 3594 5.050567 GCTGAAGTTGAAATGCTTTCCTTTG 60.051 40.000 6.29 3.73 38.90 2.77
2780 3630 7.615365 TGGGTGATGAGTAGCATTTCTTATTTT 59.385 33.333 0.00 0.00 37.34 1.82
2798 3648 8.313292 TCTTATTTTAGCCATTGTTTCAGCAAT 58.687 29.630 0.00 0.00 39.42 3.56
2825 3675 2.174363 TCTGCAGACATGTGTTCTGG 57.826 50.000 13.74 0.00 32.55 3.86
2899 3794 5.246883 ACTGGCTAAGCTTGAATCCAAATTT 59.753 36.000 9.86 0.00 0.00 1.82
2928 3823 2.057137 TCAGTATTGCCAGCCCATTC 57.943 50.000 0.00 0.00 0.00 2.67
2952 3847 7.592938 TCAACTTGTTTTGTTGCATCTATAGG 58.407 34.615 0.00 0.00 43.00 2.57
2975 3870 5.233689 GGTACCTTTATATGTGTTCTCGTGC 59.766 44.000 4.06 0.00 0.00 5.34
2980 5762 6.237942 CCTTTATATGTGTTCTCGTGCTCTTG 60.238 42.308 0.00 0.00 0.00 3.02
2982 5764 1.852942 TGTGTTCTCGTGCTCTTGTC 58.147 50.000 0.00 0.00 0.00 3.18
2987 5769 4.506654 GTGTTCTCGTGCTCTTGTCTTTAA 59.493 41.667 0.00 0.00 0.00 1.52
2992 5774 7.259290 TCTCGTGCTCTTGTCTTTAATTTTT 57.741 32.000 0.00 0.00 0.00 1.94
2993 5775 8.373048 TCTCGTGCTCTTGTCTTTAATTTTTA 57.627 30.769 0.00 0.00 0.00 1.52
2999 5781 9.120538 TGCTCTTGTCTTTAATTTTTACTGTCT 57.879 29.630 0.00 0.00 0.00 3.41
3013 6146 2.103373 ACTGTCTGTCTGTCAGTGTGT 58.897 47.619 8.42 0.00 41.96 3.72
3022 6155 3.932710 GTCTGTCAGTGTGTTCTGTTTCA 59.067 43.478 0.00 0.00 36.85 2.69
3025 6158 3.065233 TGTCAGTGTGTTCTGTTTCATGC 59.935 43.478 0.00 0.00 36.85 4.06
3028 6161 4.338964 TCAGTGTGTTCTGTTTCATGCAAT 59.661 37.500 0.00 0.00 36.85 3.56
3032 6165 6.262944 AGTGTGTTCTGTTTCATGCAATTAGA 59.737 34.615 0.00 0.00 0.00 2.10
3042 6175 3.628942 TCATGCAATTAGAGTCATGGTGC 59.371 43.478 0.00 0.00 37.49 5.01
3046 6179 3.792401 CAATTAGAGTCATGGTGCGGTA 58.208 45.455 0.00 0.00 0.00 4.02
3056 6189 0.034337 TGGTGCGGTACTGAAACCTC 59.966 55.000 21.27 3.94 37.39 3.85
3091 6224 9.857656 AAATTCAAGAGGATAATATTCTGCTCA 57.142 29.630 19.78 4.51 0.00 4.26
3149 6282 8.671921 TGATGAGTAGCATTTCTTCTTTCATTC 58.328 33.333 0.00 0.00 37.34 2.67
3167 6300 4.020928 TCATTCAGCCATTGTTTGAGCAAT 60.021 37.500 0.00 0.00 39.42 3.56
3187 6320 7.101054 AGCAATTTTCATTTCTGCATACATGT 58.899 30.769 2.69 2.69 35.44 3.21
3188 6321 7.064134 AGCAATTTTCATTTCTGCATACATGTG 59.936 33.333 9.11 0.00 35.44 3.21
3189 6322 7.148540 GCAATTTTCATTTCTGCATACATGTGT 60.149 33.333 9.11 0.00 33.19 3.72
3190 6323 9.356433 CAATTTTCATTTCTGCATACATGTGTA 57.644 29.630 9.11 0.00 34.67 2.90
3191 6324 8.915871 ATTTTCATTTCTGCATACATGTGTAC 57.084 30.769 9.11 0.00 32.72 2.90
3192 6325 7.686438 TTTCATTTCTGCATACATGTGTACT 57.314 32.000 9.11 0.00 32.72 2.73
3193 6326 6.667007 TCATTTCTGCATACATGTGTACTG 57.333 37.500 9.11 0.65 32.72 2.74
3200 6333 4.006989 GCATACATGTGTACTGGGTTTCA 58.993 43.478 9.11 0.00 32.72 2.69
3327 6469 3.853355 CCAAGAGATGGGCTGACTAAT 57.147 47.619 0.00 0.00 46.27 1.73
3332 6474 4.293494 AGAGATGGGCTGACTAATCTTGA 58.707 43.478 1.64 0.00 29.59 3.02
3338 6480 4.166725 TGGGCTGACTAATCTTGAATCCAT 59.833 41.667 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.557942 GGCTTTGCCGTTGTGATG 57.442 55.556 0.00 0.00 39.62 3.07
9 10 5.584067 TGGAGACATCATAGGGCTTTGCC 62.584 52.174 0.00 0.00 41.93 4.52
10 11 2.225467 GGAGACATCATAGGGCTTTGC 58.775 52.381 0.00 0.00 0.00 3.68
11 12 3.209410 GTGGAGACATCATAGGGCTTTG 58.791 50.000 0.00 0.00 46.14 2.77
12 13 2.846206 TGTGGAGACATCATAGGGCTTT 59.154 45.455 0.00 0.00 46.14 3.51
13 14 2.437281 CTGTGGAGACATCATAGGGCTT 59.563 50.000 0.00 0.00 46.14 4.35
14 15 2.045524 CTGTGGAGACATCATAGGGCT 58.954 52.381 0.00 0.00 46.14 5.19
15 16 1.071385 CCTGTGGAGACATCATAGGGC 59.929 57.143 0.00 0.00 46.14 5.19
16 17 1.071385 GCCTGTGGAGACATCATAGGG 59.929 57.143 8.53 0.00 46.14 3.53
17 18 1.764723 TGCCTGTGGAGACATCATAGG 59.235 52.381 0.00 0.00 46.14 2.57
18 19 2.800985 CGTGCCTGTGGAGACATCATAG 60.801 54.545 0.00 0.00 46.14 2.23
19 20 1.136891 CGTGCCTGTGGAGACATCATA 59.863 52.381 0.00 0.00 46.14 2.15
20 21 0.107993 CGTGCCTGTGGAGACATCAT 60.108 55.000 0.00 0.00 46.14 2.45
21 22 1.293179 CGTGCCTGTGGAGACATCA 59.707 57.895 0.00 0.00 46.14 3.07
22 23 2.103042 GCGTGCCTGTGGAGACATC 61.103 63.158 0.00 0.00 46.14 3.06
23 24 2.046892 GCGTGCCTGTGGAGACAT 60.047 61.111 0.00 0.00 46.14 3.06
24 25 4.314440 GGCGTGCCTGTGGAGACA 62.314 66.667 2.98 0.00 38.70 3.41
25 26 3.612247 ATGGCGTGCCTGTGGAGAC 62.612 63.158 12.84 0.00 36.94 3.36
26 27 3.315142 GATGGCGTGCCTGTGGAGA 62.315 63.158 12.84 0.00 36.94 3.71
27 28 2.821366 GATGGCGTGCCTGTGGAG 60.821 66.667 12.84 0.00 36.94 3.86
28 29 4.408821 GGATGGCGTGCCTGTGGA 62.409 66.667 12.84 0.00 36.94 4.02
29 30 2.535485 TAAGGATGGCGTGCCTGTGG 62.535 60.000 12.84 0.00 34.00 4.17
30 31 1.078497 TAAGGATGGCGTGCCTGTG 60.078 57.895 12.84 0.00 34.00 3.66
31 32 1.078426 GTAAGGATGGCGTGCCTGT 60.078 57.895 12.84 0.47 34.00 4.00
32 33 0.392998 AAGTAAGGATGGCGTGCCTG 60.393 55.000 12.84 0.00 34.00 4.85
33 34 0.392998 CAAGTAAGGATGGCGTGCCT 60.393 55.000 12.84 0.00 36.94 4.75
34 35 0.392461 TCAAGTAAGGATGGCGTGCC 60.392 55.000 3.30 3.30 0.00 5.01
35 36 1.130561 GTTCAAGTAAGGATGGCGTGC 59.869 52.381 0.00 0.00 0.00 5.34
36 37 1.393539 CGTTCAAGTAAGGATGGCGTG 59.606 52.381 0.00 0.00 0.00 5.34
37 38 1.674817 CCGTTCAAGTAAGGATGGCGT 60.675 52.381 0.00 0.00 0.00 5.68
38 39 1.006832 CCGTTCAAGTAAGGATGGCG 58.993 55.000 0.00 0.00 0.00 5.69
39 40 2.007608 GTCCGTTCAAGTAAGGATGGC 58.992 52.381 0.00 0.00 35.00 4.40
40 41 3.262420 CAGTCCGTTCAAGTAAGGATGG 58.738 50.000 0.00 0.00 35.00 3.51
41 42 3.262420 CCAGTCCGTTCAAGTAAGGATG 58.738 50.000 0.00 0.00 35.00 3.51
42 43 2.904434 ACCAGTCCGTTCAAGTAAGGAT 59.096 45.455 0.00 0.00 35.00 3.24
43 44 2.322658 ACCAGTCCGTTCAAGTAAGGA 58.677 47.619 0.00 0.00 0.00 3.36
44 45 2.833631 ACCAGTCCGTTCAAGTAAGG 57.166 50.000 0.00 0.00 0.00 2.69
45 46 6.607735 TTAAAACCAGTCCGTTCAAGTAAG 57.392 37.500 0.00 0.00 0.00 2.34
46 47 6.998968 TTTAAAACCAGTCCGTTCAAGTAA 57.001 33.333 0.00 0.00 0.00 2.24
47 48 6.998968 TTTTAAAACCAGTCCGTTCAAGTA 57.001 33.333 0.00 0.00 0.00 2.24
48 49 5.900865 TTTTAAAACCAGTCCGTTCAAGT 57.099 34.783 0.00 0.00 0.00 3.16
49 50 5.918576 GGATTTTAAAACCAGTCCGTTCAAG 59.081 40.000 1.97 0.00 0.00 3.02
50 51 5.360144 TGGATTTTAAAACCAGTCCGTTCAA 59.640 36.000 14.46 0.00 0.00 2.69
51 52 4.888239 TGGATTTTAAAACCAGTCCGTTCA 59.112 37.500 14.46 0.00 0.00 3.18
52 53 5.441709 TGGATTTTAAAACCAGTCCGTTC 57.558 39.130 14.46 2.31 0.00 3.95
53 54 5.778862 CATGGATTTTAAAACCAGTCCGTT 58.221 37.500 19.85 7.58 37.12 4.44
54 55 4.321675 GCATGGATTTTAAAACCAGTCCGT 60.322 41.667 19.85 14.18 37.12 4.69
55 56 4.173256 GCATGGATTTTAAAACCAGTCCG 58.827 43.478 19.85 12.80 37.12 4.79
56 57 4.503910 GGCATGGATTTTAAAACCAGTCC 58.496 43.478 19.85 15.58 37.12 3.85
57 58 4.020662 TGGGCATGGATTTTAAAACCAGTC 60.021 41.667 19.85 15.05 37.12 3.51
58 59 3.906846 TGGGCATGGATTTTAAAACCAGT 59.093 39.130 19.85 10.68 37.12 4.00
59 60 4.550076 TGGGCATGGATTTTAAAACCAG 57.450 40.909 19.85 14.93 37.12 4.00
60 61 4.103153 TGTTGGGCATGGATTTTAAAACCA 59.897 37.500 18.41 18.41 38.09 3.67
61 62 4.646572 TGTTGGGCATGGATTTTAAAACC 58.353 39.130 1.97 7.57 0.00 3.27
62 63 6.816134 ATTGTTGGGCATGGATTTTAAAAC 57.184 33.333 1.97 0.00 0.00 2.43
63 64 7.038017 TCCTATTGTTGGGCATGGATTTTAAAA 60.038 33.333 2.51 2.51 0.00 1.52
64 65 6.441924 TCCTATTGTTGGGCATGGATTTTAAA 59.558 34.615 0.00 0.00 0.00 1.52
65 66 5.960811 TCCTATTGTTGGGCATGGATTTTAA 59.039 36.000 0.00 0.00 0.00 1.52
66 67 5.362430 GTCCTATTGTTGGGCATGGATTTTA 59.638 40.000 0.00 0.00 0.00 1.52
67 68 4.162131 GTCCTATTGTTGGGCATGGATTTT 59.838 41.667 0.00 0.00 0.00 1.82
68 69 3.706086 GTCCTATTGTTGGGCATGGATTT 59.294 43.478 0.00 0.00 0.00 2.17
69 70 3.052642 AGTCCTATTGTTGGGCATGGATT 60.053 43.478 0.00 0.00 0.00 3.01
70 71 2.515429 AGTCCTATTGTTGGGCATGGAT 59.485 45.455 0.00 0.00 0.00 3.41
71 72 1.922447 AGTCCTATTGTTGGGCATGGA 59.078 47.619 0.00 0.00 0.00 3.41
72 73 2.026641 CAGTCCTATTGTTGGGCATGG 58.973 52.381 0.00 0.00 0.00 3.66
73 74 3.003394 TCAGTCCTATTGTTGGGCATG 57.997 47.619 0.00 0.00 0.00 4.06
74 75 3.745480 CGATCAGTCCTATTGTTGGGCAT 60.745 47.826 0.00 0.00 0.00 4.40
75 76 2.419990 CGATCAGTCCTATTGTTGGGCA 60.420 50.000 0.00 0.00 0.00 5.36
76 77 2.213499 CGATCAGTCCTATTGTTGGGC 58.787 52.381 0.00 0.00 0.00 5.36
77 78 2.213499 GCGATCAGTCCTATTGTTGGG 58.787 52.381 0.00 0.00 0.00 4.12
78 79 2.158900 AGGCGATCAGTCCTATTGTTGG 60.159 50.000 0.00 0.00 0.00 3.77
79 80 3.126831 GAGGCGATCAGTCCTATTGTTG 58.873 50.000 0.00 0.00 31.71 3.33
80 81 2.766263 TGAGGCGATCAGTCCTATTGTT 59.234 45.455 0.00 0.00 32.77 2.83
81 82 2.388735 TGAGGCGATCAGTCCTATTGT 58.611 47.619 0.00 0.00 32.77 2.71
82 83 3.583806 GATGAGGCGATCAGTCCTATTG 58.416 50.000 0.00 0.00 42.53 1.90
83 84 2.230025 CGATGAGGCGATCAGTCCTATT 59.770 50.000 0.00 0.00 42.53 1.73
84 85 1.815613 CGATGAGGCGATCAGTCCTAT 59.184 52.381 0.00 0.00 42.53 2.57
85 86 1.239347 CGATGAGGCGATCAGTCCTA 58.761 55.000 0.00 0.00 42.53 2.94
86 87 1.459455 CCGATGAGGCGATCAGTCCT 61.459 60.000 0.00 0.00 42.53 3.85
87 88 1.006805 CCGATGAGGCGATCAGTCC 60.007 63.158 0.00 0.00 42.53 3.85
88 89 1.006805 CCCGATGAGGCGATCAGTC 60.007 63.158 0.00 0.00 42.53 3.51
89 90 1.043116 TTCCCGATGAGGCGATCAGT 61.043 55.000 0.00 0.00 42.53 3.41
90 91 0.319383 CTTCCCGATGAGGCGATCAG 60.319 60.000 0.00 0.00 42.53 2.90
91 92 1.742146 CTTCCCGATGAGGCGATCA 59.258 57.895 0.00 0.00 43.70 2.92
92 93 1.005630 CCTTCCCGATGAGGCGATC 60.006 63.158 0.00 0.00 39.21 3.69
93 94 2.511452 CCCTTCCCGATGAGGCGAT 61.511 63.158 0.00 0.00 39.21 4.58
94 95 3.154473 CCCTTCCCGATGAGGCGA 61.154 66.667 0.00 0.00 39.21 5.54
95 96 3.447025 GACCCTTCCCGATGAGGCG 62.447 68.421 0.00 0.00 39.21 5.52
96 97 2.066999 AGACCCTTCCCGATGAGGC 61.067 63.158 0.00 0.00 39.21 4.70
97 98 0.687757 TCAGACCCTTCCCGATGAGG 60.688 60.000 0.00 0.00 40.63 3.86
98 99 1.195115 TTCAGACCCTTCCCGATGAG 58.805 55.000 0.00 0.00 0.00 2.90
99 100 1.879575 ATTCAGACCCTTCCCGATGA 58.120 50.000 0.00 0.00 0.00 2.92
100 101 3.838244 TTATTCAGACCCTTCCCGATG 57.162 47.619 0.00 0.00 0.00 3.84
101 102 4.235372 AGATTATTCAGACCCTTCCCGAT 58.765 43.478 0.00 0.00 0.00 4.18
102 103 3.654273 AGATTATTCAGACCCTTCCCGA 58.346 45.455 0.00 0.00 0.00 5.14
103 104 4.423625 AAGATTATTCAGACCCTTCCCG 57.576 45.455 0.00 0.00 0.00 5.14
104 105 7.998964 TGAATAAAGATTATTCAGACCCTTCCC 59.001 37.037 17.26 0.00 38.55 3.97
105 106 8.980481 TGAATAAAGATTATTCAGACCCTTCC 57.020 34.615 17.26 0.00 38.55 3.46
114 115 4.319477 GCGGCGCTGAATAAAGATTATTCA 60.319 41.667 26.86 19.10 40.43 2.57
115 116 4.151798 GCGGCGCTGAATAAAGATTATTC 58.848 43.478 26.86 13.39 35.20 1.75
116 117 3.058224 GGCGGCGCTGAATAAAGATTATT 60.058 43.478 32.30 0.00 0.00 1.40
117 118 2.484264 GGCGGCGCTGAATAAAGATTAT 59.516 45.455 32.30 0.00 0.00 1.28
118 119 1.871039 GGCGGCGCTGAATAAAGATTA 59.129 47.619 32.30 0.00 0.00 1.75
119 120 0.663153 GGCGGCGCTGAATAAAGATT 59.337 50.000 32.30 0.00 0.00 2.40
120 121 0.463654 TGGCGGCGCTGAATAAAGAT 60.464 50.000 32.30 0.00 0.00 2.40
121 122 0.463654 ATGGCGGCGCTGAATAAAGA 60.464 50.000 32.30 4.82 0.00 2.52
122 123 0.040958 GATGGCGGCGCTGAATAAAG 60.041 55.000 32.30 0.00 0.00 1.85
123 124 1.771073 CGATGGCGGCGCTGAATAAA 61.771 55.000 32.30 9.03 0.00 1.40
124 125 2.243957 CGATGGCGGCGCTGAATAA 61.244 57.895 32.30 10.83 0.00 1.40
125 126 2.661537 CGATGGCGGCGCTGAATA 60.662 61.111 32.30 13.29 0.00 1.75
126 127 4.838152 ACGATGGCGGCGCTGAAT 62.838 61.111 32.30 21.83 43.17 2.57
134 135 2.961721 CGGTGATGACGATGGCGG 60.962 66.667 0.00 0.00 43.17 6.13
135 136 3.630148 GCGGTGATGACGATGGCG 61.630 66.667 0.00 0.00 44.79 5.69
136 137 3.272334 GGCGGTGATGACGATGGC 61.272 66.667 0.00 0.00 0.00 4.40
137 138 2.961721 CGGCGGTGATGACGATGG 60.962 66.667 0.00 0.00 45.34 3.51
138 139 3.630148 GCGGCGGTGATGACGATG 61.630 66.667 9.78 0.00 45.34 3.84
139 140 4.891727 GGCGGCGGTGATGACGAT 62.892 66.667 9.78 0.00 45.34 3.73
143 144 4.812476 CTTCGGCGGCGGTGATGA 62.812 66.667 31.73 7.96 0.00 2.92
145 146 4.814294 GACTTCGGCGGCGGTGAT 62.814 66.667 31.73 14.56 0.00 3.06
149 150 4.735132 TCTTGACTTCGGCGGCGG 62.735 66.667 31.73 18.65 0.00 6.13
150 151 3.479269 GTCTTGACTTCGGCGGCG 61.479 66.667 27.15 27.15 0.00 6.46
151 152 3.479269 CGTCTTGACTTCGGCGGC 61.479 66.667 7.21 0.00 0.00 6.53
152 153 1.140407 GATCGTCTTGACTTCGGCGG 61.140 60.000 7.21 0.00 0.00 6.13
153 154 0.456142 TGATCGTCTTGACTTCGGCG 60.456 55.000 0.00 0.00 0.00 6.46
154 155 1.390463 GTTGATCGTCTTGACTTCGGC 59.610 52.381 0.00 0.00 0.00 5.54
155 156 2.672714 TGTTGATCGTCTTGACTTCGG 58.327 47.619 0.00 0.00 0.00 4.30
156 157 3.120991 GGTTGTTGATCGTCTTGACTTCG 60.121 47.826 0.00 0.00 0.00 3.79
157 158 4.058817 AGGTTGTTGATCGTCTTGACTTC 58.941 43.478 0.00 0.00 0.00 3.01
158 159 4.073293 AGGTTGTTGATCGTCTTGACTT 57.927 40.909 0.00 0.00 0.00 3.01
159 160 3.753294 AGGTTGTTGATCGTCTTGACT 57.247 42.857 0.00 0.00 0.00 3.41
160 161 5.917541 TTTAGGTTGTTGATCGTCTTGAC 57.082 39.130 0.00 0.00 0.00 3.18
161 162 6.238538 GGTTTTTAGGTTGTTGATCGTCTTGA 60.239 38.462 0.00 0.00 0.00 3.02
162 163 5.912955 GGTTTTTAGGTTGTTGATCGTCTTG 59.087 40.000 0.00 0.00 0.00 3.02
163 164 5.826208 AGGTTTTTAGGTTGTTGATCGTCTT 59.174 36.000 0.00 0.00 0.00 3.01
164 165 5.374071 AGGTTTTTAGGTTGTTGATCGTCT 58.626 37.500 0.00 0.00 0.00 4.18
165 166 5.684550 AGGTTTTTAGGTTGTTGATCGTC 57.315 39.130 0.00 0.00 0.00 4.20
166 167 6.426025 GTCTAGGTTTTTAGGTTGTTGATCGT 59.574 38.462 0.00 0.00 0.00 3.73
167 168 6.649557 AGTCTAGGTTTTTAGGTTGTTGATCG 59.350 38.462 0.00 0.00 0.00 3.69
168 169 7.981102 AGTCTAGGTTTTTAGGTTGTTGATC 57.019 36.000 0.00 0.00 0.00 2.92
169 170 7.601508 CGTAGTCTAGGTTTTTAGGTTGTTGAT 59.398 37.037 0.00 0.00 0.00 2.57
170 171 6.925165 CGTAGTCTAGGTTTTTAGGTTGTTGA 59.075 38.462 0.00 0.00 0.00 3.18
171 172 6.925165 TCGTAGTCTAGGTTTTTAGGTTGTTG 59.075 38.462 0.00 0.00 0.00 3.33
172 173 7.014615 TCTCGTAGTCTAGGTTTTTAGGTTGTT 59.985 37.037 0.00 0.00 0.00 2.83
173 174 6.491403 TCTCGTAGTCTAGGTTTTTAGGTTGT 59.509 38.462 0.00 0.00 0.00 3.32
174 175 6.917533 TCTCGTAGTCTAGGTTTTTAGGTTG 58.082 40.000 0.00 0.00 0.00 3.77
175 176 6.350027 GCTCTCGTAGTCTAGGTTTTTAGGTT 60.350 42.308 0.00 0.00 0.00 3.50
176 177 5.125257 GCTCTCGTAGTCTAGGTTTTTAGGT 59.875 44.000 0.00 0.00 0.00 3.08
177 178 5.450274 GGCTCTCGTAGTCTAGGTTTTTAGG 60.450 48.000 0.00 0.00 0.00 2.69
178 179 5.357596 AGGCTCTCGTAGTCTAGGTTTTTAG 59.642 44.000 0.00 0.00 38.82 1.85
179 180 5.259632 AGGCTCTCGTAGTCTAGGTTTTTA 58.740 41.667 0.00 0.00 38.82 1.52
180 181 4.087907 AGGCTCTCGTAGTCTAGGTTTTT 58.912 43.478 0.00 0.00 38.82 1.94
181 182 3.699413 AGGCTCTCGTAGTCTAGGTTTT 58.301 45.455 0.00 0.00 38.82 2.43
182 183 3.369242 AGGCTCTCGTAGTCTAGGTTT 57.631 47.619 0.00 0.00 38.82 3.27
183 184 4.500499 TTAGGCTCTCGTAGTCTAGGTT 57.500 45.455 0.00 0.00 43.24 3.50
184 185 4.500499 TTTAGGCTCTCGTAGTCTAGGT 57.500 45.455 0.00 0.00 43.24 3.08
185 186 4.261280 GCTTTTAGGCTCTCGTAGTCTAGG 60.261 50.000 0.00 0.00 43.24 3.02
186 187 4.553156 CGCTTTTAGGCTCTCGTAGTCTAG 60.553 50.000 0.00 0.00 43.24 2.43
187 188 3.311871 CGCTTTTAGGCTCTCGTAGTCTA 59.688 47.826 0.00 0.00 38.82 2.59
188 189 2.097791 CGCTTTTAGGCTCTCGTAGTCT 59.902 50.000 0.00 0.66 44.37 3.24
189 190 2.097142 TCGCTTTTAGGCTCTCGTAGTC 59.903 50.000 0.00 0.00 0.00 2.59
190 191 2.089980 TCGCTTTTAGGCTCTCGTAGT 58.910 47.619 0.00 0.00 0.00 2.73
191 192 2.846039 TCGCTTTTAGGCTCTCGTAG 57.154 50.000 0.00 0.00 0.00 3.51
192 193 2.034305 GGATCGCTTTTAGGCTCTCGTA 59.966 50.000 0.00 0.00 0.00 3.43
193 194 1.202428 GGATCGCTTTTAGGCTCTCGT 60.202 52.381 0.00 0.00 0.00 4.18
194 195 1.202417 TGGATCGCTTTTAGGCTCTCG 60.202 52.381 0.00 0.00 0.00 4.04
195 196 2.205911 GTGGATCGCTTTTAGGCTCTC 58.794 52.381 0.00 0.00 0.00 3.20
196 197 1.555075 TGTGGATCGCTTTTAGGCTCT 59.445 47.619 0.00 0.00 0.00 4.09
197 198 1.666189 GTGTGGATCGCTTTTAGGCTC 59.334 52.381 0.00 0.00 0.00 4.70
198 199 1.739067 GTGTGGATCGCTTTTAGGCT 58.261 50.000 0.00 0.00 0.00 4.58
199 200 0.373716 CGTGTGGATCGCTTTTAGGC 59.626 55.000 0.00 0.00 0.00 3.93
200 201 1.393539 CACGTGTGGATCGCTTTTAGG 59.606 52.381 7.58 0.00 0.00 2.69
201 202 2.066262 ACACGTGTGGATCGCTTTTAG 58.934 47.619 22.71 0.00 34.19 1.85
202 203 1.795872 CACACGTGTGGATCGCTTTTA 59.204 47.619 35.65 0.00 42.10 1.52
203 204 0.586319 CACACGTGTGGATCGCTTTT 59.414 50.000 35.65 0.55 42.10 2.27
204 205 0.249699 TCACACGTGTGGATCGCTTT 60.250 50.000 39.88 5.48 45.65 3.51
205 206 0.249699 TTCACACGTGTGGATCGCTT 60.250 50.000 39.88 6.26 45.65 4.68
206 207 0.037326 ATTCACACGTGTGGATCGCT 60.037 50.000 39.88 20.33 40.07 4.93
207 208 2.456000 ATTCACACGTGTGGATCGC 58.544 52.632 39.88 0.00 40.07 4.58
210 211 0.606096 TCGGATTCACACGTGTGGAT 59.394 50.000 39.88 38.39 46.46 3.41
211 212 0.319211 GTCGGATTCACACGTGTGGA 60.319 55.000 39.88 35.81 45.65 4.02
212 213 1.614227 CGTCGGATTCACACGTGTGG 61.614 60.000 39.88 26.76 45.65 4.17
213 214 0.662077 TCGTCGGATTCACACGTGTG 60.662 55.000 37.04 37.04 46.91 3.82
214 215 0.242825 ATCGTCGGATTCACACGTGT 59.757 50.000 17.22 17.22 35.05 4.49
215 216 0.914551 GATCGTCGGATTCACACGTG 59.085 55.000 15.48 15.48 35.05 4.49
216 217 0.179145 GGATCGTCGGATTCACACGT 60.179 55.000 6.54 0.00 35.05 4.49
217 218 0.870307 GGGATCGTCGGATTCACACG 60.870 60.000 0.00 1.28 31.51 4.49
218 219 0.529992 GGGGATCGTCGGATTCACAC 60.530 60.000 0.00 0.00 31.26 3.82
219 220 1.682451 GGGGGATCGTCGGATTCACA 61.682 60.000 0.00 0.00 32.70 3.58
220 221 1.069258 GGGGGATCGTCGGATTCAC 59.931 63.158 0.00 0.00 29.94 3.18
221 222 1.075525 AGGGGGATCGTCGGATTCA 60.076 57.895 0.00 0.00 31.51 2.57
222 223 1.113517 TGAGGGGGATCGTCGGATTC 61.114 60.000 0.00 0.00 31.51 2.52
223 224 1.075525 TGAGGGGGATCGTCGGATT 60.076 57.895 0.00 0.00 31.51 3.01
224 225 1.833049 GTGAGGGGGATCGTCGGAT 60.833 63.158 0.00 0.00 34.96 4.18
225 226 2.441532 GTGAGGGGGATCGTCGGA 60.442 66.667 0.00 0.00 33.27 4.55
226 227 3.537874 GGTGAGGGGGATCGTCGG 61.538 72.222 0.00 0.00 33.27 4.79
227 228 2.758327 TGGTGAGGGGGATCGTCG 60.758 66.667 0.00 0.00 33.27 5.12
228 229 2.732619 GGTGGTGAGGGGGATCGTC 61.733 68.421 0.00 0.00 0.00 4.20
229 230 2.687566 GGTGGTGAGGGGGATCGT 60.688 66.667 0.00 0.00 0.00 3.73
230 231 3.849951 CGGTGGTGAGGGGGATCG 61.850 72.222 0.00 0.00 0.00 3.69
231 232 3.480133 CCGGTGGTGAGGGGGATC 61.480 72.222 0.00 0.00 0.00 3.36
238 239 4.308458 TTGGTCGCCGGTGGTGAG 62.308 66.667 16.49 0.00 43.30 3.51
239 240 4.308458 CTTGGTCGCCGGTGGTGA 62.308 66.667 16.49 0.00 40.17 4.02
252 253 4.367023 TTCCGCCGACGACCTTGG 62.367 66.667 0.00 0.00 43.93 3.61
253 254 2.809601 CTTCCGCCGACGACCTTG 60.810 66.667 0.00 0.00 43.93 3.61
254 255 2.987547 TCTTCCGCCGACGACCTT 60.988 61.111 0.00 0.00 43.93 3.50
255 256 3.441290 CTCTTCCGCCGACGACCT 61.441 66.667 0.00 0.00 43.93 3.85
257 258 4.117661 AGCTCTTCCGCCGACGAC 62.118 66.667 0.00 0.00 43.93 4.34
258 259 3.812019 GAGCTCTTCCGCCGACGA 61.812 66.667 6.43 0.00 43.93 4.20
259 260 3.743091 GAGAGCTCTTCCGCCGACG 62.743 68.421 19.36 0.00 39.67 5.12
260 261 2.103340 GAGAGCTCTTCCGCCGAC 59.897 66.667 19.36 0.00 0.00 4.79
261 262 2.266816 TAGGAGAGCTCTTCCGCCGA 62.267 60.000 19.36 7.81 0.00 5.54
262 263 1.384989 TTAGGAGAGCTCTTCCGCCG 61.385 60.000 19.36 0.00 0.00 6.46
263 264 0.103390 GTTAGGAGAGCTCTTCCGCC 59.897 60.000 19.36 14.36 0.00 6.13
264 265 0.248702 CGTTAGGAGAGCTCTTCCGC 60.249 60.000 19.36 13.65 0.00 5.54
265 266 0.382515 CCGTTAGGAGAGCTCTTCCG 59.617 60.000 19.36 14.51 41.02 4.30
266 267 0.103390 GCCGTTAGGAGAGCTCTTCC 59.897 60.000 19.36 19.17 41.02 3.46
267 268 0.248702 CGCCGTTAGGAGAGCTCTTC 60.249 60.000 19.36 17.05 39.96 2.87
268 269 1.668101 CCGCCGTTAGGAGAGCTCTT 61.668 60.000 19.36 5.29 39.96 2.85
269 270 2.122167 CCGCCGTTAGGAGAGCTCT 61.122 63.158 18.28 18.28 39.96 4.09
270 271 2.413765 CCGCCGTTAGGAGAGCTC 59.586 66.667 5.27 5.27 39.96 4.09
271 272 3.839432 GCCGCCGTTAGGAGAGCT 61.839 66.667 0.00 0.00 39.96 4.09
272 273 3.839432 AGCCGCCGTTAGGAGAGC 61.839 66.667 0.00 0.00 39.96 4.09
273 274 2.105128 CAGCCGCCGTTAGGAGAG 59.895 66.667 0.00 0.00 39.96 3.20
274 275 4.143333 GCAGCCGCCGTTAGGAGA 62.143 66.667 0.00 0.00 39.96 3.71
275 276 3.665675 AAGCAGCCGCCGTTAGGAG 62.666 63.158 0.00 0.00 41.02 3.69
276 277 3.702048 AAGCAGCCGCCGTTAGGA 61.702 61.111 0.00 0.00 41.02 2.94
277 278 3.499737 CAAGCAGCCGCCGTTAGG 61.500 66.667 0.00 0.00 39.83 2.69
278 279 4.166011 GCAAGCAGCCGCCGTTAG 62.166 66.667 0.00 0.00 39.83 2.34
284 285 3.934684 GATCTCGCAAGCAGCCGC 61.935 66.667 0.00 0.00 41.38 6.53
285 286 3.624300 CGATCTCGCAAGCAGCCG 61.624 66.667 0.00 0.00 41.38 5.52
295 296 1.849219 CGAAGAAAGAAGGCGATCTCG 59.151 52.381 0.00 0.00 43.27 4.04
296 297 2.197577 CCGAAGAAAGAAGGCGATCTC 58.802 52.381 0.00 0.00 0.00 2.75
297 298 1.134670 CCCGAAGAAAGAAGGCGATCT 60.135 52.381 0.00 0.00 0.00 2.75
298 299 1.291132 CCCGAAGAAAGAAGGCGATC 58.709 55.000 0.00 0.00 0.00 3.69
299 300 0.613777 ACCCGAAGAAAGAAGGCGAT 59.386 50.000 0.00 0.00 0.00 4.58
300 301 0.320421 CACCCGAAGAAAGAAGGCGA 60.320 55.000 0.00 0.00 0.00 5.54
301 302 1.912371 GCACCCGAAGAAAGAAGGCG 61.912 60.000 0.00 0.00 0.00 5.52
302 303 0.889186 TGCACCCGAAGAAAGAAGGC 60.889 55.000 0.00 0.00 0.00 4.35
303 304 1.537202 CTTGCACCCGAAGAAAGAAGG 59.463 52.381 0.00 0.00 0.00 3.46
304 305 2.494059 TCTTGCACCCGAAGAAAGAAG 58.506 47.619 0.00 0.00 0.00 2.85
305 306 2.631160 TCTTGCACCCGAAGAAAGAA 57.369 45.000 0.00 0.00 0.00 2.52
306 307 2.631160 TTCTTGCACCCGAAGAAAGA 57.369 45.000 0.00 0.00 36.67 2.52
308 309 2.925724 TCTTTCTTGCACCCGAAGAAA 58.074 42.857 9.53 9.53 43.76 2.52
309 310 2.631160 TCTTTCTTGCACCCGAAGAA 57.369 45.000 0.00 0.00 37.60 2.52
310 311 2.616842 GTTTCTTTCTTGCACCCGAAGA 59.383 45.455 0.00 0.00 0.00 2.87
311 312 2.618709 AGTTTCTTTCTTGCACCCGAAG 59.381 45.455 0.00 0.00 0.00 3.79
312 313 2.650322 AGTTTCTTTCTTGCACCCGAA 58.350 42.857 0.00 0.00 0.00 4.30
313 314 2.341846 AGTTTCTTTCTTGCACCCGA 57.658 45.000 0.00 0.00 0.00 5.14
314 315 4.201685 CGTATAGTTTCTTTCTTGCACCCG 60.202 45.833 0.00 0.00 0.00 5.28
315 316 4.694037 ACGTATAGTTTCTTTCTTGCACCC 59.306 41.667 0.00 0.00 0.00 4.61
316 317 5.857822 ACGTATAGTTTCTTTCTTGCACC 57.142 39.130 0.00 0.00 0.00 5.01
317 318 6.147328 AGGAACGTATAGTTTCTTTCTTGCAC 59.853 38.462 0.00 0.00 46.28 4.57
318 319 6.228258 AGGAACGTATAGTTTCTTTCTTGCA 58.772 36.000 0.00 0.00 46.28 4.08
319 320 6.723131 AGGAACGTATAGTTTCTTTCTTGC 57.277 37.500 0.00 0.00 46.28 4.01
327 328 9.310716 AGCAGTAAAATAGGAACGTATAGTTTC 57.689 33.333 0.00 0.00 44.35 2.78
328 329 9.310716 GAGCAGTAAAATAGGAACGTATAGTTT 57.689 33.333 0.00 0.00 44.35 2.66
330 331 7.919621 GTGAGCAGTAAAATAGGAACGTATAGT 59.080 37.037 0.00 0.00 0.00 2.12
331 332 7.381678 GGTGAGCAGTAAAATAGGAACGTATAG 59.618 40.741 0.00 0.00 0.00 1.31
332 333 7.069085 AGGTGAGCAGTAAAATAGGAACGTATA 59.931 37.037 0.00 0.00 0.00 1.47
333 334 6.047231 GGTGAGCAGTAAAATAGGAACGTAT 58.953 40.000 0.00 0.00 0.00 3.06
334 335 5.186409 AGGTGAGCAGTAAAATAGGAACGTA 59.814 40.000 0.00 0.00 0.00 3.57
335 336 4.020485 AGGTGAGCAGTAAAATAGGAACGT 60.020 41.667 0.00 0.00 0.00 3.99
336 337 4.330074 CAGGTGAGCAGTAAAATAGGAACG 59.670 45.833 0.00 0.00 0.00 3.95
337 338 5.246307 ACAGGTGAGCAGTAAAATAGGAAC 58.754 41.667 0.00 0.00 0.00 3.62
338 339 5.499004 ACAGGTGAGCAGTAAAATAGGAA 57.501 39.130 0.00 0.00 0.00 3.36
339 340 6.808321 ATACAGGTGAGCAGTAAAATAGGA 57.192 37.500 0.00 0.00 0.00 2.94
340 341 7.047891 TGAATACAGGTGAGCAGTAAAATAGG 58.952 38.462 0.00 0.00 0.00 2.57
341 342 8.668510 ATGAATACAGGTGAGCAGTAAAATAG 57.331 34.615 0.00 0.00 0.00 1.73
342 343 8.892723 CAATGAATACAGGTGAGCAGTAAAATA 58.107 33.333 0.00 0.00 0.00 1.40
343 344 7.394359 ACAATGAATACAGGTGAGCAGTAAAAT 59.606 33.333 0.00 0.00 0.00 1.82
344 345 6.714810 ACAATGAATACAGGTGAGCAGTAAAA 59.285 34.615 0.00 0.00 0.00 1.52
377 378 8.075593 TGTTTACAGATGGAGTACGTAAAAAC 57.924 34.615 0.00 0.00 34.75 2.43
378 379 8.659925 TTGTTTACAGATGGAGTACGTAAAAA 57.340 30.769 0.00 0.00 34.75 1.94
382 383 8.742777 AGTATTTGTTTACAGATGGAGTACGTA 58.257 33.333 0.00 0.00 0.00 3.57
383 384 7.609056 AGTATTTGTTTACAGATGGAGTACGT 58.391 34.615 0.00 0.00 0.00 3.57
384 385 7.222224 GGAGTATTTGTTTACAGATGGAGTACG 59.778 40.741 0.00 0.00 0.00 3.67
385 386 7.222224 CGGAGTATTTGTTTACAGATGGAGTAC 59.778 40.741 0.00 0.00 0.00 2.73
386 387 7.093640 ACGGAGTATTTGTTTACAGATGGAGTA 60.094 37.037 0.00 0.00 41.94 2.59
387 388 6.106673 CGGAGTATTTGTTTACAGATGGAGT 58.893 40.000 0.00 0.00 0.00 3.85
388 389 6.036083 CACGGAGTATTTGTTTACAGATGGAG 59.964 42.308 0.00 0.00 41.61 3.86
389 390 5.872617 CACGGAGTATTTGTTTACAGATGGA 59.127 40.000 0.00 0.00 41.61 3.41
390 391 5.872617 TCACGGAGTATTTGTTTACAGATGG 59.127 40.000 0.00 0.00 41.61 3.51
391 392 6.961359 TCACGGAGTATTTGTTTACAGATG 57.039 37.500 0.00 0.00 41.61 2.90
392 393 6.761714 GGATCACGGAGTATTTGTTTACAGAT 59.238 38.462 0.00 0.00 41.61 2.90
393 394 6.070995 AGGATCACGGAGTATTTGTTTACAGA 60.071 38.462 0.00 0.00 41.61 3.41
394 395 6.106673 AGGATCACGGAGTATTTGTTTACAG 58.893 40.000 0.00 0.00 41.61 2.74
395 396 6.045072 AGGATCACGGAGTATTTGTTTACA 57.955 37.500 0.00 0.00 41.61 2.41
396 397 8.483307 TTTAGGATCACGGAGTATTTGTTTAC 57.517 34.615 0.00 0.00 41.61 2.01
397 398 7.767198 CCTTTAGGATCACGGAGTATTTGTTTA 59.233 37.037 0.00 0.00 36.02 2.01
398 399 6.598064 CCTTTAGGATCACGGAGTATTTGTTT 59.402 38.462 0.00 0.00 36.02 2.83
399 400 6.070424 TCCTTTAGGATCACGGAGTATTTGTT 60.070 38.462 0.00 0.00 37.93 2.83
400 401 5.424252 TCCTTTAGGATCACGGAGTATTTGT 59.576 40.000 0.00 0.00 37.93 2.83
401 402 5.914033 TCCTTTAGGATCACGGAGTATTTG 58.086 41.667 0.00 0.00 37.93 2.32
402 403 6.555463 TTCCTTTAGGATCACGGAGTATTT 57.445 37.500 0.00 0.00 44.98 1.40
403 404 6.555463 TTTCCTTTAGGATCACGGAGTATT 57.445 37.500 0.00 0.00 44.98 1.89
404 405 6.555463 TTTTCCTTTAGGATCACGGAGTAT 57.445 37.500 0.00 0.00 44.98 2.12
405 406 6.555463 ATTTTCCTTTAGGATCACGGAGTA 57.445 37.500 0.00 0.00 44.98 2.59
406 407 4.903045 TTTTCCTTTAGGATCACGGAGT 57.097 40.909 0.00 0.00 44.98 3.85
407 408 6.583562 AGTATTTTCCTTTAGGATCACGGAG 58.416 40.000 0.00 0.00 44.98 4.63
408 409 6.407752 GGAGTATTTTCCTTTAGGATCACGGA 60.408 42.308 0.00 0.00 44.98 4.69
409 410 5.758784 GGAGTATTTTCCTTTAGGATCACGG 59.241 44.000 0.00 0.00 44.98 4.94
410 411 5.462398 CGGAGTATTTTCCTTTAGGATCACG 59.538 44.000 0.00 0.00 44.98 4.35
411 412 6.258068 CACGGAGTATTTTCCTTTAGGATCAC 59.742 42.308 0.00 0.00 41.90 3.06
412 413 6.155565 TCACGGAGTATTTTCCTTTAGGATCA 59.844 38.462 0.00 0.00 41.90 2.92
413 414 6.579865 TCACGGAGTATTTTCCTTTAGGATC 58.420 40.000 0.00 0.00 41.90 3.36
414 415 6.555463 TCACGGAGTATTTTCCTTTAGGAT 57.445 37.500 0.00 0.00 41.90 3.24
415 416 6.168389 GTTCACGGAGTATTTTCCTTTAGGA 58.832 40.000 0.00 0.00 41.61 2.94
416 417 5.935789 TGTTCACGGAGTATTTTCCTTTAGG 59.064 40.000 0.00 0.00 41.61 2.69
417 418 7.414098 CCATGTTCACGGAGTATTTTCCTTTAG 60.414 40.741 0.00 0.00 41.61 1.85
418 419 6.373216 CCATGTTCACGGAGTATTTTCCTTTA 59.627 38.462 0.00 0.00 41.61 1.85
419 420 5.183140 CCATGTTCACGGAGTATTTTCCTTT 59.817 40.000 0.00 0.00 41.61 3.11
420 421 4.700213 CCATGTTCACGGAGTATTTTCCTT 59.300 41.667 0.00 0.00 41.61 3.36
421 422 4.019681 TCCATGTTCACGGAGTATTTTCCT 60.020 41.667 0.00 0.00 41.61 3.36
422 423 4.258543 TCCATGTTCACGGAGTATTTTCC 58.741 43.478 0.00 0.00 41.61 3.13
423 424 5.470845 CTCCATGTTCACGGAGTATTTTC 57.529 43.478 6.75 0.00 41.61 2.29
431 432 3.693807 ACTACTACTCCATGTTCACGGA 58.306 45.455 0.00 0.00 0.00 4.69
432 433 4.451629 AACTACTACTCCATGTTCACGG 57.548 45.455 0.00 0.00 0.00 4.94
433 434 6.780706 AAAAACTACTACTCCATGTTCACG 57.219 37.500 0.00 0.00 0.00 4.35
470 485 9.302345 CGTCTACACAGATATTACTTTTCACAT 57.698 33.333 0.00 0.00 32.09 3.21
472 487 8.906636 TCGTCTACACAGATATTACTTTTCAC 57.093 34.615 0.00 0.00 32.09 3.18
483 498 3.192001 ACCGCTTTTCGTCTACACAGATA 59.808 43.478 0.00 0.00 36.19 1.98
484 499 2.029290 ACCGCTTTTCGTCTACACAGAT 60.029 45.455 0.00 0.00 36.19 2.90
485 500 1.338973 ACCGCTTTTCGTCTACACAGA 59.661 47.619 0.00 0.00 36.19 3.41
486 501 1.719780 GACCGCTTTTCGTCTACACAG 59.280 52.381 0.00 0.00 36.19 3.66
487 502 1.338973 AGACCGCTTTTCGTCTACACA 59.661 47.619 0.00 0.00 36.19 3.72
488 503 2.061740 AGACCGCTTTTCGTCTACAC 57.938 50.000 0.00 0.00 36.19 2.90
489 504 2.806608 AAGACCGCTTTTCGTCTACA 57.193 45.000 0.00 0.00 36.19 2.74
503 518 2.352960 GACATGATGCGGAGAAAAGACC 59.647 50.000 0.00 0.00 0.00 3.85
504 519 3.002791 TGACATGATGCGGAGAAAAGAC 58.997 45.455 0.00 0.00 0.00 3.01
524 539 1.391577 TCATTCGCCCCATTCACATG 58.608 50.000 0.00 0.00 0.00 3.21
525 540 1.958579 CATCATTCGCCCCATTCACAT 59.041 47.619 0.00 0.00 0.00 3.21
526 541 1.064832 TCATCATTCGCCCCATTCACA 60.065 47.619 0.00 0.00 0.00 3.58
527 542 1.679139 TCATCATTCGCCCCATTCAC 58.321 50.000 0.00 0.00 0.00 3.18
528 543 2.300433 CTTCATCATTCGCCCCATTCA 58.700 47.619 0.00 0.00 0.00 2.57
529 544 1.610522 CCTTCATCATTCGCCCCATTC 59.389 52.381 0.00 0.00 0.00 2.67
530 545 1.696063 CCTTCATCATTCGCCCCATT 58.304 50.000 0.00 0.00 0.00 3.16
547 562 2.410322 TTTCGCCCAGTGACATGCCT 62.410 55.000 0.00 0.00 0.00 4.75
549 564 0.109597 CTTTTCGCCCAGTGACATGC 60.110 55.000 0.00 0.00 0.00 4.06
550 565 0.523072 CCTTTTCGCCCAGTGACATG 59.477 55.000 0.00 0.00 0.00 3.21
551 566 0.400213 TCCTTTTCGCCCAGTGACAT 59.600 50.000 0.00 0.00 0.00 3.06
552 567 0.250295 CTCCTTTTCGCCCAGTGACA 60.250 55.000 0.00 0.00 0.00 3.58
553 568 0.034896 TCTCCTTTTCGCCCAGTGAC 59.965 55.000 0.00 0.00 0.00 3.67
554 569 0.321671 CTCTCCTTTTCGCCCAGTGA 59.678 55.000 0.00 0.00 0.00 3.41
555 570 0.674895 CCTCTCCTTTTCGCCCAGTG 60.675 60.000 0.00 0.00 0.00 3.66
556 571 1.679898 CCTCTCCTTTTCGCCCAGT 59.320 57.895 0.00 0.00 0.00 4.00
557 572 1.078143 CCCTCTCCTTTTCGCCCAG 60.078 63.158 0.00 0.00 0.00 4.45
558 573 1.537889 TCCCTCTCCTTTTCGCCCA 60.538 57.895 0.00 0.00 0.00 5.36
608 630 4.082300 AGAGAGAGTAGTAGTCGACGTTCA 60.082 45.833 10.46 0.00 0.00 3.18
623 645 2.139118 GAGCGCAACAAAAGAGAGAGT 58.861 47.619 11.47 0.00 0.00 3.24
777 1534 2.162408 GAGGGGATTTGTTTCGCTTCTG 59.838 50.000 0.00 0.00 33.57 3.02
778 1535 2.224769 TGAGGGGATTTGTTTCGCTTCT 60.225 45.455 0.00 0.00 36.18 2.85
781 1538 2.514458 ATGAGGGGATTTGTTTCGCT 57.486 45.000 0.00 0.00 0.00 4.93
783 1540 5.133221 AGGATTATGAGGGGATTTGTTTCG 58.867 41.667 0.00 0.00 0.00 3.46
850 1607 1.762522 ATTGATGGAGGCGAGCGGAT 61.763 55.000 0.00 0.00 0.00 4.18
853 1610 0.811219 TTGATTGATGGAGGCGAGCG 60.811 55.000 0.00 0.00 0.00 5.03
854 1611 1.534595 GATTGATTGATGGAGGCGAGC 59.465 52.381 0.00 0.00 0.00 5.03
856 1613 1.541015 CGGATTGATTGATGGAGGCGA 60.541 52.381 0.00 0.00 0.00 5.54
857 1614 0.870393 CGGATTGATTGATGGAGGCG 59.130 55.000 0.00 0.00 0.00 5.52
858 1615 1.876156 GACGGATTGATTGATGGAGGC 59.124 52.381 0.00 0.00 0.00 4.70
860 1617 3.136763 CTGGACGGATTGATTGATGGAG 58.863 50.000 0.00 0.00 0.00 3.86
861 1618 2.158769 CCTGGACGGATTGATTGATGGA 60.159 50.000 0.00 0.00 33.16 3.41
862 1619 2.224606 CCTGGACGGATTGATTGATGG 58.775 52.381 0.00 0.00 33.16 3.51
864 1621 3.181454 GGTACCTGGACGGATTGATTGAT 60.181 47.826 4.06 0.00 36.31 2.57
865 1622 2.169769 GGTACCTGGACGGATTGATTGA 59.830 50.000 4.06 0.00 36.31 2.57
866 1623 2.561569 GGTACCTGGACGGATTGATTG 58.438 52.381 4.06 0.00 36.31 2.67
893 1651 1.382695 GACCGAGATTGGGGAGGGA 60.383 63.158 0.00 0.00 0.00 4.20
931 1689 1.008995 GAGAGATCAGAGGCGACGC 60.009 63.158 12.43 12.43 0.00 5.19
932 1690 1.278337 CGAGAGATCAGAGGCGACG 59.722 63.158 0.00 0.00 0.00 5.12
933 1691 0.816018 TCCGAGAGATCAGAGGCGAC 60.816 60.000 0.00 0.00 0.00 5.19
935 1693 0.958091 AATCCGAGAGATCAGAGGCG 59.042 55.000 0.00 0.00 32.47 5.52
936 1694 2.030007 CAGAATCCGAGAGATCAGAGGC 60.030 54.545 0.00 0.00 32.47 4.70
938 1696 2.030007 GGCAGAATCCGAGAGATCAGAG 60.030 54.545 0.00 0.00 32.47 3.35
939 1697 1.959985 GGCAGAATCCGAGAGATCAGA 59.040 52.381 0.00 0.00 32.47 3.27
995 1778 1.838846 TCCTCCTCCATCATCGCCC 60.839 63.158 0.00 0.00 0.00 6.13
1602 2391 1.452833 GTGCTGGATCTCCAAGGGC 60.453 63.158 0.00 1.49 46.97 5.19
1605 2394 1.817099 GCCGTGCTGGATCTCCAAG 60.817 63.158 0.00 0.00 46.97 3.61
1606 2395 2.268920 GCCGTGCTGGATCTCCAA 59.731 61.111 0.00 0.00 46.97 3.53
1860 2661 4.641645 CTGTTCGTGGCCCTGGCA 62.642 66.667 10.86 0.00 44.11 4.92
2016 2817 1.886313 CATGAGGCTGTAGCGGCTG 60.886 63.158 13.86 0.00 43.26 4.85
2049 2850 1.159713 TGTCTTGTGTTGCAGCTCCG 61.160 55.000 1.17 0.00 0.00 4.63
2265 3075 2.285368 TTCCCCACCAGATCGGCT 60.285 61.111 3.85 0.00 39.03 5.52
2277 3087 0.530870 CGAAGAAGGATCGCTTCCCC 60.531 60.000 15.99 9.85 46.81 4.81
2474 3317 1.005748 GCTGCAAAAAGCCTCACCC 60.006 57.895 0.00 0.00 44.83 4.61
2510 3354 9.995957 CATGAGATAGGAATATAACAGTAGACG 57.004 37.037 0.00 0.00 0.00 4.18
2511 3355 9.796120 GCATGAGATAGGAATATAACAGTAGAC 57.204 37.037 0.00 0.00 0.00 2.59
2512 3356 9.760926 AGCATGAGATAGGAATATAACAGTAGA 57.239 33.333 0.00 0.00 0.00 2.59
2641 3491 5.482526 ACCACACCATGACACTACTTACATA 59.517 40.000 0.00 0.00 0.00 2.29
2642 3492 4.286032 ACCACACCATGACACTACTTACAT 59.714 41.667 0.00 0.00 0.00 2.29
2692 3542 6.648725 GCTTTCGAGCAGAATATTATCCTCTT 59.351 38.462 0.00 0.00 38.86 2.85
2735 3585 4.020307 ACCCATTTGCATACCAAAGGAAAG 60.020 41.667 2.46 0.00 45.43 2.62
2742 3592 3.700539 CTCATCACCCATTTGCATACCAA 59.299 43.478 0.00 0.00 0.00 3.67
2744 3594 3.290710 ACTCATCACCCATTTGCATACC 58.709 45.455 0.00 0.00 0.00 2.73
2780 3630 5.695816 GTGAAAATTGCTGAAACAATGGCTA 59.304 36.000 0.00 0.00 40.12 3.93
2798 3648 3.947196 ACACATGTCTGCAGAAGTGAAAA 59.053 39.130 33.78 13.04 33.21 2.29
2825 3675 3.282021 TGCCTATGCAGGATCTGAAAAC 58.718 45.455 0.00 0.00 45.91 2.43
2874 3769 3.439857 TGGATTCAAGCTTAGCCAGTT 57.560 42.857 2.00 0.00 0.00 3.16
2928 3823 7.370383 ACCTATAGATGCAACAAAACAAGTTG 58.630 34.615 0.00 0.00 46.86 3.16
2952 3847 6.040878 AGCACGAGAACACATATAAAGGTAC 58.959 40.000 0.00 0.00 0.00 3.34
2965 3860 2.890808 AAGACAAGAGCACGAGAACA 57.109 45.000 0.00 0.00 0.00 3.18
2968 3863 6.861065 AAAATTAAAGACAAGAGCACGAGA 57.139 33.333 0.00 0.00 0.00 4.04
2972 3867 9.170584 GACAGTAAAAATTAAAGACAAGAGCAC 57.829 33.333 0.00 0.00 0.00 4.40
2980 5762 9.865484 GACAGACAGACAGTAAAAATTAAAGAC 57.135 33.333 0.00 0.00 0.00 3.01
2999 5781 3.610040 AACAGAACACACTGACAGACA 57.390 42.857 10.08 0.00 40.63 3.41
3013 6146 7.362315 CCATGACTCTAATTGCATGAAACAGAA 60.362 37.037 0.00 0.00 40.29 3.02
3022 6155 2.615447 CGCACCATGACTCTAATTGCAT 59.385 45.455 0.00 0.00 0.00 3.96
3025 6158 2.632377 ACCGCACCATGACTCTAATTG 58.368 47.619 0.00 0.00 0.00 2.32
3028 6161 2.165641 CAGTACCGCACCATGACTCTAA 59.834 50.000 0.00 0.00 0.00 2.10
3032 6165 0.973632 TTCAGTACCGCACCATGACT 59.026 50.000 0.00 0.00 0.00 3.41
3042 6175 3.250040 CCAAACAAGAGGTTTCAGTACCG 59.750 47.826 0.00 0.00 46.61 4.02
3046 6179 6.154363 TGAATTTCCAAACAAGAGGTTTCAGT 59.846 34.615 0.00 0.00 46.61 3.41
3069 6202 9.334947 CTTTTGAGCAGAATATTATCCTCTTGA 57.665 33.333 2.86 0.00 0.00 3.02
3091 6224 3.631686 GGAAAACATTTGGGCAAGCTTTT 59.368 39.130 0.00 0.00 0.00 2.27
3102 6235 4.215399 TCAGCTACGGAAGGAAAACATTTG 59.785 41.667 0.00 0.00 0.00 2.32
3149 6282 4.512198 TGAAAATTGCTCAAACAATGGCTG 59.488 37.500 0.00 0.00 40.12 4.85
3167 6300 8.022550 CAGTACACATGTATGCAGAAATGAAAA 58.977 33.333 18.29 0.00 32.54 2.29
3191 6324 6.463049 CCATAGTAGATGGTACTGAAACCCAG 60.463 46.154 0.00 0.00 40.19 4.45
3192 6325 5.365605 CCATAGTAGATGGTACTGAAACCCA 59.634 44.000 0.00 0.00 38.90 4.51
3193 6326 5.855045 CCATAGTAGATGGTACTGAAACCC 58.145 45.833 0.00 0.00 38.90 4.11
3332 6474 5.314529 CTGGATCTGCAGTGAATATGGATT 58.685 41.667 14.67 0.00 0.00 3.01
3338 6480 3.851458 ATGCTGGATCTGCAGTGAATA 57.149 42.857 14.67 0.00 41.22 1.75
3352 6525 2.363975 AATGGGCTGGCAATGCTGG 61.364 57.895 4.82 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.