Multiple sequence alignment - TraesCS7D01G438100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G438100 chr7D 100.000 7333 0 0 1 7333 557402460 557409792 0.000000e+00 13542.0
1 TraesCS7D01G438100 chr7D 88.839 224 22 2 3668 3891 395078828 395078608 9.370000e-69 272.0
2 TraesCS7D01G438100 chr7D 91.011 89 7 1 3174 3261 221683569 221683481 1.290000e-22 119.0
3 TraesCS7D01G438100 chr7A 94.501 2928 104 24 3260 6164 642946179 642949072 0.000000e+00 4462.0
4 TraesCS7D01G438100 chr7A 89.662 3250 178 64 1 3176 642943012 642946177 0.000000e+00 3995.0
5 TraesCS7D01G438100 chr7A 90.021 471 40 4 6851 7320 642949771 642950235 2.930000e-168 603.0
6 TraesCS7D01G438100 chr7A 86.122 490 36 21 6387 6860 642949279 642949752 3.950000e-137 499.0
7 TraesCS7D01G438100 chr7A 88.511 235 23 3 3658 3891 159740013 159739782 1.560000e-71 281.0
8 TraesCS7D01G438100 chr7A 93.143 175 11 1 6169 6343 642949118 642949291 9.440000e-64 255.0
9 TraesCS7D01G438100 chr7B 92.075 3104 167 41 3259 6342 605448370 605451414 0.000000e+00 4296.0
10 TraesCS7D01G438100 chr7B 92.439 1587 65 26 1608 3178 605446824 605448371 0.000000e+00 2215.0
11 TraesCS7D01G438100 chr7B 89.061 969 66 20 6387 7333 605451403 605452353 0.000000e+00 1166.0
12 TraesCS7D01G438100 chr7B 82.635 1002 55 44 151 1111 605426476 605427399 0.000000e+00 776.0
13 TraesCS7D01G438100 chr7B 84.646 495 37 18 1115 1588 605445867 605446343 2.410000e-124 457.0
14 TraesCS7D01G438100 chr7B 93.464 153 9 1 1 153 605426275 605426426 7.400000e-55 226.0
15 TraesCS7D01G438100 chr7B 85.714 70 6 3 6611 6676 605481975 605482044 3.670000e-08 71.3
16 TraesCS7D01G438100 chr3B 91.687 1203 71 16 1992 3178 809798010 809799199 0.000000e+00 1640.0
17 TraesCS7D01G438100 chr3B 90.992 1199 79 16 1995 3178 799272046 799270862 0.000000e+00 1589.0
18 TraesCS7D01G438100 chr3B 95.261 823 25 6 3259 4081 809799198 809800006 0.000000e+00 1291.0
19 TraesCS7D01G438100 chr3B 95.773 686 27 2 3262 3947 799270860 799270177 0.000000e+00 1105.0
20 TraesCS7D01G438100 chr3B 90.385 156 5 2 3942 4097 799245090 799244945 5.800000e-46 196.0
21 TraesCS7D01G438100 chr5B 95.213 752 23 7 3346 4097 643127932 643127194 0.000000e+00 1177.0
22 TraesCS7D01G438100 chr5B 91.492 811 39 16 1995 2790 643128771 643127976 0.000000e+00 1088.0
23 TraesCS7D01G438100 chr5B 83.084 467 65 10 3460 3918 635383441 635383901 5.290000e-111 412.0
24 TraesCS7D01G438100 chr5B 86.283 226 28 2 3668 3890 492580419 492580644 7.350000e-60 243.0
25 TraesCS7D01G438100 chr5D 91.366 637 50 4 4519 5155 254394669 254395300 0.000000e+00 867.0
26 TraesCS7D01G438100 chr2D 91.038 636 56 1 4519 5154 67031519 67032153 0.000000e+00 857.0
27 TraesCS7D01G438100 chr2D 86.641 262 31 3 3658 3918 540217865 540218123 3.350000e-73 287.0
28 TraesCS7D01G438100 chr6B 84.714 700 85 14 2321 3020 33373089 33372412 0.000000e+00 680.0
29 TraesCS7D01G438100 chr6B 80.757 608 78 16 3259 3853 92429610 92430191 8.730000e-119 438.0
30 TraesCS7D01G438100 chr6B 93.671 79 5 0 3177 3255 452529737 452529815 1.290000e-22 119.0
31 TraesCS7D01G438100 chr5A 86.443 627 59 13 2328 2953 180352480 180353081 0.000000e+00 664.0
32 TraesCS7D01G438100 chrUn 86.146 628 62 12 2321 2947 94927788 94928391 0.000000e+00 654.0
33 TraesCS7D01G438100 chrUn 90.698 86 6 2 3177 3261 67315165 67315249 6.010000e-21 113.0
34 TraesCS7D01G438100 chrUn 90.698 86 6 2 3177 3261 248993710 248993794 6.010000e-21 113.0
35 TraesCS7D01G438100 chrUn 90.698 86 6 2 3177 3261 315256140 315256056 6.010000e-21 113.0
36 TraesCS7D01G438100 chr6D 86.124 627 63 14 2322 2947 142864216 142864819 0.000000e+00 654.0
37 TraesCS7D01G438100 chr6D 85.174 634 69 12 2321 2953 7891474 7890865 1.740000e-175 627.0
38 TraesCS7D01G438100 chr3D 85.350 628 66 14 2321 2947 167410265 167410867 1.740000e-175 627.0
39 TraesCS7D01G438100 chr4A 84.909 550 46 18 2357 2905 507909464 507909977 8.430000e-144 521.0
40 TraesCS7D01G438100 chr2B 91.954 87 7 0 3177 3263 187701034 187701120 9.990000e-24 122.0
41 TraesCS7D01G438100 chr4B 93.671 79 5 0 3177 3255 643651413 643651335 1.290000e-22 119.0
42 TraesCS7D01G438100 chr4B 91.765 85 5 2 3177 3260 535721074 535720991 4.650000e-22 117.0
43 TraesCS7D01G438100 chr4B 91.765 85 5 2 3177 3260 535734058 535733975 4.650000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G438100 chr7D 557402460 557409792 7332 False 13542.0 13542 100.00000 1 7333 1 chr7D.!!$F1 7332
1 TraesCS7D01G438100 chr7A 642943012 642950235 7223 False 1962.8 4462 90.68980 1 7320 5 chr7A.!!$F1 7319
2 TraesCS7D01G438100 chr7B 605445867 605452353 6486 False 2033.5 4296 89.55525 1115 7333 4 chr7B.!!$F3 6218
3 TraesCS7D01G438100 chr7B 605426275 605427399 1124 False 501.0 776 88.04950 1 1111 2 chr7B.!!$F2 1110
4 TraesCS7D01G438100 chr3B 809798010 809800006 1996 False 1465.5 1640 93.47400 1992 4081 2 chr3B.!!$F1 2089
5 TraesCS7D01G438100 chr3B 799270177 799272046 1869 True 1347.0 1589 93.38250 1995 3947 2 chr3B.!!$R2 1952
6 TraesCS7D01G438100 chr5B 643127194 643128771 1577 True 1132.5 1177 93.35250 1995 4097 2 chr5B.!!$R1 2102
7 TraesCS7D01G438100 chr5D 254394669 254395300 631 False 867.0 867 91.36600 4519 5155 1 chr5D.!!$F1 636
8 TraesCS7D01G438100 chr2D 67031519 67032153 634 False 857.0 857 91.03800 4519 5154 1 chr2D.!!$F1 635
9 TraesCS7D01G438100 chr6B 33372412 33373089 677 True 680.0 680 84.71400 2321 3020 1 chr6B.!!$R1 699
10 TraesCS7D01G438100 chr6B 92429610 92430191 581 False 438.0 438 80.75700 3259 3853 1 chr6B.!!$F1 594
11 TraesCS7D01G438100 chr5A 180352480 180353081 601 False 664.0 664 86.44300 2328 2953 1 chr5A.!!$F1 625
12 TraesCS7D01G438100 chrUn 94927788 94928391 603 False 654.0 654 86.14600 2321 2947 1 chrUn.!!$F2 626
13 TraesCS7D01G438100 chr6D 142864216 142864819 603 False 654.0 654 86.12400 2322 2947 1 chr6D.!!$F1 625
14 TraesCS7D01G438100 chr6D 7890865 7891474 609 True 627.0 627 85.17400 2321 2953 1 chr6D.!!$R1 632
15 TraesCS7D01G438100 chr3D 167410265 167410867 602 False 627.0 627 85.35000 2321 2947 1 chr3D.!!$F1 626
16 TraesCS7D01G438100 chr4A 507909464 507909977 513 False 521.0 521 84.90900 2357 2905 1 chr4A.!!$F1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
545 634 0.679002 CCCAGATGGTGCCACTTGAG 60.679 60.0 0.00 0.0 0.0 3.02 F
1800 2460 0.111061 ACTCCATGAACAGCCAGCAA 59.889 50.0 0.00 0.0 0.0 3.91 F
3190 3876 0.106116 ACATCTACTCCCTCCGTCCC 60.106 60.0 0.00 0.0 0.0 4.46 F
3191 3877 0.106167 CATCTACTCCCTCCGTCCCA 60.106 60.0 0.00 0.0 0.0 4.37 F
5125 5831 0.687427 ACTTTGCACAGCTTTGGGGT 60.687 50.0 1.35 0.0 0.0 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 2546 0.743701 CTCTGAGGCTCGCAAATGCT 60.744 55.0 10.42 0.00 39.32 3.79 R
3293 3979 0.106967 GGAGGAGATTTGCTGGGGAC 60.107 60.0 0.00 0.00 0.00 4.46 R
5033 5739 0.524862 ACGAGTACAGCTGTAACGGG 59.475 55.0 35.27 24.91 37.11 5.28 R
5167 5873 2.176364 ACCGCTCCTATCCAAGTAGGTA 59.824 50.0 0.35 0.00 41.65 3.08 R
6665 7461 0.244721 AAGTACGTTGTACCGAGCCC 59.755 55.0 0.00 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 1.539827 CCAAAGGAAGTTACCAAGGCG 59.460 52.381 0.00 0.00 0.00 5.52
101 102 1.375523 AAGGCGCCAGACCTTTACG 60.376 57.895 31.54 0.00 45.39 3.18
105 106 2.349755 GCCAGACCTTTACGCCCA 59.650 61.111 0.00 0.00 0.00 5.36
113 114 4.698304 CAGACCTTTACGCCCAAGATTTTA 59.302 41.667 0.00 0.00 0.00 1.52
147 148 4.020573 TGGGTGTTCAGTTCTGTAATCGAT 60.021 41.667 0.00 0.00 0.00 3.59
214 267 1.859302 TTGGTGTTTTGCCTGGAACT 58.141 45.000 0.00 0.00 0.00 3.01
293 369 3.710209 AGGTTGAGACTTGCTATGCTT 57.290 42.857 0.00 0.00 0.00 3.91
294 370 4.026356 AGGTTGAGACTTGCTATGCTTT 57.974 40.909 0.00 0.00 0.00 3.51
295 371 4.401925 AGGTTGAGACTTGCTATGCTTTT 58.598 39.130 0.00 0.00 0.00 2.27
296 372 4.829492 AGGTTGAGACTTGCTATGCTTTTT 59.171 37.500 0.00 0.00 0.00 1.94
402 490 6.198216 CAGTGTTATGTTTTCCCACTTTTTCG 59.802 38.462 0.00 0.00 34.31 3.46
408 496 4.022242 TGTTTTCCCACTTTTTCGTTGTGA 60.022 37.500 0.00 0.00 33.95 3.58
427 515 4.937620 TGTGAATTGTCCTAGCATCTTCAC 59.062 41.667 13.53 13.53 39.36 3.18
448 537 9.262358 CTTCACTACTGCTTTAAGAGTTTACTT 57.738 33.333 0.00 0.00 0.00 2.24
451 540 7.117956 CACTACTGCTTTAAGAGTTTACTTCCC 59.882 40.741 0.00 0.00 0.00 3.97
486 575 9.013229 TGAGAAAAACTAAATCATGCAGTACAT 57.987 29.630 0.00 0.00 40.66 2.29
488 577 8.462016 AGAAAAACTAAATCATGCAGTACATCC 58.538 33.333 0.00 0.00 36.64 3.51
528 617 3.713826 TGAATCCTGGAAACTGTACCC 57.286 47.619 0.00 0.00 0.00 3.69
529 618 2.983192 TGAATCCTGGAAACTGTACCCA 59.017 45.455 0.00 1.89 0.00 4.51
530 619 3.009033 TGAATCCTGGAAACTGTACCCAG 59.991 47.826 16.85 16.85 45.28 4.45
543 632 4.007457 CCCAGATGGTGCCACTTG 57.993 61.111 0.00 0.00 0.00 3.16
544 633 1.379916 CCCAGATGGTGCCACTTGA 59.620 57.895 0.00 0.00 0.00 3.02
545 634 0.679002 CCCAGATGGTGCCACTTGAG 60.679 60.000 0.00 0.00 0.00 3.02
546 635 0.679002 CCAGATGGTGCCACTTGAGG 60.679 60.000 0.00 0.00 0.00 3.86
567 658 9.479549 TTGAGGCCAAAATTCTTCTTCTATATT 57.520 29.630 5.01 0.00 0.00 1.28
597 688 1.071605 GATGTCGACTTGCCTGTCAC 58.928 55.000 17.92 0.00 36.82 3.67
666 757 7.504238 TGGGTTGTCACTGTAAATAAATTCAGT 59.496 33.333 0.00 0.00 41.02 3.41
706 802 7.663493 TGTGTATTTCATAAACATCTGACCACA 59.337 33.333 0.00 0.00 28.19 4.17
742 851 2.137523 GGTGGCAAGCATGTCTTTTTG 58.862 47.619 0.00 0.00 31.27 2.44
745 854 1.070601 GGCAAGCATGTCTTTTTGGGT 59.929 47.619 0.00 0.00 31.27 4.51
802 919 1.747444 ATGTCAGGTCAAACCCCTCT 58.253 50.000 0.00 0.00 39.75 3.69
806 923 1.628846 TCAGGTCAAACCCCTCTAAGC 59.371 52.381 0.00 0.00 39.75 3.09
925 1064 2.745482 GCATGTGCACCAGATCAGATCT 60.745 50.000 15.69 7.15 39.75 2.75
938 1077 6.261158 CCAGATCAGATCTAGACGAAGTTACA 59.739 42.308 12.88 0.00 38.35 2.41
940 1079 8.349245 CAGATCAGATCTAGACGAAGTTACAAT 58.651 37.037 12.88 0.00 38.35 2.71
951 1090 6.106877 ACGAAGTTACAATGGAATCAATCG 57.893 37.500 0.00 0.00 37.78 3.34
991 1130 7.721286 CAGAGTGTGGAGGTTGATAATAATC 57.279 40.000 0.00 0.00 0.00 1.75
1061 1207 1.650528 AAAGAGCAGAGCAGGTAGGT 58.349 50.000 0.00 0.00 0.00 3.08
1075 1221 0.958822 GTAGGTTGTTGGCCTGTTGG 59.041 55.000 3.32 0.00 37.54 3.77
1076 1222 0.553819 TAGGTTGTTGGCCTGTTGGT 59.446 50.000 3.32 0.00 37.54 3.67
1103 1249 1.464734 TCGCTTTCGATCTCCAGTCT 58.535 50.000 0.00 0.00 40.21 3.24
1112 1263 5.312120 TCGATCTCCAGTCTTGTTAAGTC 57.688 43.478 0.00 0.00 0.00 3.01
1122 1273 3.852536 GTCTTGTTAAGTCTCGGTCGATG 59.147 47.826 0.00 0.00 0.00 3.84
1129 1280 4.427096 AAGTCTCGGTCGATGCTATATG 57.573 45.455 0.00 0.00 0.00 1.78
1135 1286 2.672714 GGTCGATGCTATATGCGTGAA 58.327 47.619 0.00 0.00 46.63 3.18
1148 1299 7.535258 GCTATATGCGTGAAATCTTACATTTGG 59.465 37.037 0.00 0.00 0.00 3.28
1149 1300 4.433186 TGCGTGAAATCTTACATTTGGG 57.567 40.909 0.00 0.00 0.00 4.12
1151 1302 5.004448 TGCGTGAAATCTTACATTTGGGTA 58.996 37.500 0.00 0.00 0.00 3.69
1155 1306 6.540205 GTGAAATCTTACATTTGGGTACGTC 58.460 40.000 0.00 0.00 0.00 4.34
1197 1348 4.510038 TTTCTTTTTCTCTCCTGCATGC 57.490 40.909 11.82 11.82 0.00 4.06
1198 1349 3.430042 TCTTTTTCTCTCCTGCATGCT 57.570 42.857 20.33 0.00 0.00 3.79
1199 1350 3.079578 TCTTTTTCTCTCCTGCATGCTG 58.920 45.455 20.33 18.55 0.00 4.41
1200 1351 1.171308 TTTTCTCTCCTGCATGCTGC 58.829 50.000 20.33 0.00 45.29 5.25
1300 1480 0.888619 TCAAGTGAGACCTAGCCACG 59.111 55.000 0.00 0.00 36.06 4.94
1326 1507 8.817876 GCCCTTCAATCTTTACCTATCTATAGT 58.182 37.037 0.00 0.00 0.00 2.12
1575 1766 4.851784 CCCCCATGTCCCCTCTAA 57.148 61.111 0.00 0.00 0.00 2.10
1593 1784 7.285629 CCCCTCTAATAAAGTTCTTCCATTTCC 59.714 40.741 0.00 0.00 0.00 3.13
1594 1785 7.285629 CCCTCTAATAAAGTTCTTCCATTTCCC 59.714 40.741 0.00 0.00 0.00 3.97
1602 1795 4.140686 AGTTCTTCCATTTCCCTCCCTTTT 60.141 41.667 0.00 0.00 0.00 2.27
1661 2313 3.005791 CCCTTTTGTCTGCTTTACCCTTG 59.994 47.826 0.00 0.00 0.00 3.61
1680 2332 5.163519 CCCTTGCTCTTTTTGTTCTTTCTCA 60.164 40.000 0.00 0.00 0.00 3.27
1681 2333 6.462067 CCCTTGCTCTTTTTGTTCTTTCTCAT 60.462 38.462 0.00 0.00 0.00 2.90
1682 2334 7.255590 CCCTTGCTCTTTTTGTTCTTTCTCATA 60.256 37.037 0.00 0.00 0.00 2.15
1683 2335 7.806960 CCTTGCTCTTTTTGTTCTTTCTCATAG 59.193 37.037 0.00 0.00 0.00 2.23
1684 2336 6.672147 TGCTCTTTTTGTTCTTTCTCATAGC 58.328 36.000 0.00 0.00 0.00 2.97
1685 2337 6.488006 TGCTCTTTTTGTTCTTTCTCATAGCT 59.512 34.615 0.00 0.00 0.00 3.32
1686 2338 6.800892 GCTCTTTTTGTTCTTTCTCATAGCTG 59.199 38.462 0.00 0.00 0.00 4.24
1687 2339 7.521261 GCTCTTTTTGTTCTTTCTCATAGCTGT 60.521 37.037 0.00 0.00 0.00 4.40
1694 2354 5.489792 TCTTTCTCATAGCTGTGTCCTTT 57.510 39.130 10.52 0.00 0.00 3.11
1726 2386 7.247728 CACTCTACGATCCAGATAATCTTAGC 58.752 42.308 0.00 0.00 29.58 3.09
1800 2460 0.111061 ACTCCATGAACAGCCAGCAA 59.889 50.000 0.00 0.00 0.00 3.91
1812 2472 1.244019 GCCAGCAACCCCTGTACTTG 61.244 60.000 0.00 0.00 0.00 3.16
1824 2484 3.261897 CCCTGTACTTGATGAACAGTCCT 59.738 47.826 0.00 0.00 39.17 3.85
1881 2541 0.613853 TTCTTCCGGATCGAGGTGGT 60.614 55.000 4.15 0.00 0.00 4.16
1886 2546 2.668632 GGATCGAGGTGGTTGGCA 59.331 61.111 0.00 0.00 0.00 4.92
2093 2753 2.683933 AAGGTCATCTCGCCCCGT 60.684 61.111 0.00 0.00 0.00 5.28
2224 2893 1.135746 GCTGAACTGATGCTCTTGTGC 60.136 52.381 0.00 0.00 0.00 4.57
2526 3198 1.750206 TCTTGTGCAGCATTGTGTTGT 59.250 42.857 0.00 0.00 30.85 3.32
2527 3199 1.855978 CTTGTGCAGCATTGTGTTGTG 59.144 47.619 0.00 0.00 30.85 3.33
2528 3200 0.816373 TGTGCAGCATTGTGTTGTGT 59.184 45.000 0.00 0.00 30.85 3.72
2529 3201 1.202203 GTGCAGCATTGTGTTGTGTG 58.798 50.000 0.00 0.00 30.85 3.82
2530 3202 0.816373 TGCAGCATTGTGTTGTGTGT 59.184 45.000 0.00 0.00 30.85 3.72
2531 3203 1.202279 TGCAGCATTGTGTTGTGTGTC 60.202 47.619 0.00 0.00 30.85 3.67
2535 3207 3.065786 CAGCATTGTGTTGTGTGTCTCTT 59.934 43.478 0.00 0.00 0.00 2.85
2576 3249 4.529769 TCTCATGTTTCAGTCCTGAGATGT 59.470 41.667 0.00 0.00 41.13 3.06
2577 3250 4.572909 TCATGTTTCAGTCCTGAGATGTG 58.427 43.478 0.00 0.00 41.13 3.21
2723 3403 1.225704 GGAAGTGGAGGATGCCCAG 59.774 63.158 0.00 0.00 33.75 4.45
2905 3585 2.424601 TGAAGCTGTATCCTGCAATTGC 59.575 45.455 23.69 23.69 37.95 3.56
2982 3668 9.683069 CGTAAGTCGGTACTAAATTACCATATT 57.317 33.333 10.55 0.00 41.65 1.28
3075 3761 1.135139 TGTCAGGCTCTCATCGCTAAC 59.865 52.381 0.00 0.00 0.00 2.34
3162 3848 6.463049 CGTTCCCAGATAATGAGGATTGTACT 60.463 42.308 0.00 0.00 30.99 2.73
3176 3862 3.769739 TTGTACTGCTGGTTCACATCT 57.230 42.857 0.00 0.00 0.00 2.90
3177 3863 4.882842 TTGTACTGCTGGTTCACATCTA 57.117 40.909 0.00 0.00 0.00 1.98
3178 3864 4.188247 TGTACTGCTGGTTCACATCTAC 57.812 45.455 0.00 0.00 0.00 2.59
3179 3865 3.832490 TGTACTGCTGGTTCACATCTACT 59.168 43.478 0.00 0.00 0.00 2.57
3180 3866 3.601443 ACTGCTGGTTCACATCTACTC 57.399 47.619 0.00 0.00 0.00 2.59
3181 3867 2.234908 ACTGCTGGTTCACATCTACTCC 59.765 50.000 0.00 0.00 0.00 3.85
3182 3868 1.555075 TGCTGGTTCACATCTACTCCC 59.445 52.381 0.00 0.00 0.00 4.30
3183 3869 1.834263 GCTGGTTCACATCTACTCCCT 59.166 52.381 0.00 0.00 0.00 4.20
3184 3870 2.159028 GCTGGTTCACATCTACTCCCTC 60.159 54.545 0.00 0.00 0.00 4.30
3185 3871 2.432510 CTGGTTCACATCTACTCCCTCC 59.567 54.545 0.00 0.00 0.00 4.30
3186 3872 1.409427 GGTTCACATCTACTCCCTCCG 59.591 57.143 0.00 0.00 0.00 4.63
3187 3873 2.100989 GTTCACATCTACTCCCTCCGT 58.899 52.381 0.00 0.00 0.00 4.69
3188 3874 2.054232 TCACATCTACTCCCTCCGTC 57.946 55.000 0.00 0.00 0.00 4.79
3189 3875 1.033574 CACATCTACTCCCTCCGTCC 58.966 60.000 0.00 0.00 0.00 4.79
3190 3876 0.106116 ACATCTACTCCCTCCGTCCC 60.106 60.000 0.00 0.00 0.00 4.46
3191 3877 0.106167 CATCTACTCCCTCCGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
3192 3878 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
3193 3879 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
3194 3880 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
3195 3881 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
3196 3882 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3197 3883 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3198 3884 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3199 3885 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3200 3886 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3201 3887 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3202 3888 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
3204 3890 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
3205 3891 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
3206 3892 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
3207 3893 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
3208 3894 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
3209 3895 6.019152 CGTCCCATAATGTAAGACGTTTTTG 58.981 40.000 0.00 0.00 43.89 2.44
3210 3896 5.798434 GTCCCATAATGTAAGACGTTTTTGC 59.202 40.000 0.00 0.00 0.00 3.68
3211 3897 5.473846 TCCCATAATGTAAGACGTTTTTGCA 59.526 36.000 0.00 1.87 0.00 4.08
3212 3898 6.016192 TCCCATAATGTAAGACGTTTTTGCAA 60.016 34.615 0.00 0.00 0.00 4.08
3213 3899 6.307800 CCCATAATGTAAGACGTTTTTGCAAG 59.692 38.462 0.00 0.00 0.00 4.01
3214 3900 6.183359 CCATAATGTAAGACGTTTTTGCAAGC 60.183 38.462 0.00 0.00 0.00 4.01
3215 3901 4.568152 ATGTAAGACGTTTTTGCAAGCT 57.432 36.364 0.00 0.00 0.00 3.74
3216 3902 5.682943 ATGTAAGACGTTTTTGCAAGCTA 57.317 34.783 0.00 0.00 0.00 3.32
3217 3903 5.682943 TGTAAGACGTTTTTGCAAGCTAT 57.317 34.783 0.00 0.00 0.00 2.97
3218 3904 5.448438 TGTAAGACGTTTTTGCAAGCTATG 58.552 37.500 0.00 0.00 0.00 2.23
3219 3905 4.568152 AAGACGTTTTTGCAAGCTATGT 57.432 36.364 0.00 0.68 0.00 2.29
3220 3906 4.568152 AGACGTTTTTGCAAGCTATGTT 57.432 36.364 0.00 0.00 0.00 2.71
3221 3907 4.290155 AGACGTTTTTGCAAGCTATGTTG 58.710 39.130 0.00 0.00 0.00 3.33
3222 3908 3.380142 ACGTTTTTGCAAGCTATGTTGG 58.620 40.909 0.00 0.00 0.00 3.77
3223 3909 3.181480 ACGTTTTTGCAAGCTATGTTGGT 60.181 39.130 0.00 0.00 0.00 3.67
3224 3910 3.801594 CGTTTTTGCAAGCTATGTTGGTT 59.198 39.130 0.00 0.00 0.00 3.67
3225 3911 4.269844 CGTTTTTGCAAGCTATGTTGGTTT 59.730 37.500 0.00 0.00 0.00 3.27
3226 3912 5.460419 CGTTTTTGCAAGCTATGTTGGTTTA 59.540 36.000 0.00 0.00 0.00 2.01
3227 3913 6.561350 CGTTTTTGCAAGCTATGTTGGTTTAC 60.561 38.462 0.00 0.00 0.00 2.01
3228 3914 5.521906 TTTGCAAGCTATGTTGGTTTACA 57.478 34.783 0.00 0.00 0.00 2.41
3229 3915 5.521906 TTGCAAGCTATGTTGGTTTACAA 57.478 34.783 0.00 0.00 36.54 2.41
3230 3916 5.521906 TGCAAGCTATGTTGGTTTACAAA 57.478 34.783 0.00 0.00 41.58 2.83
3231 3917 5.907207 TGCAAGCTATGTTGGTTTACAAAA 58.093 33.333 0.00 0.00 41.58 2.44
3232 3918 6.341316 TGCAAGCTATGTTGGTTTACAAAAA 58.659 32.000 0.00 0.00 41.58 1.94
3233 3919 6.256757 TGCAAGCTATGTTGGTTTACAAAAAC 59.743 34.615 0.00 0.00 41.58 2.43
3234 3920 6.256757 GCAAGCTATGTTGGTTTACAAAAACA 59.743 34.615 3.66 0.00 45.68 2.83
3235 3921 7.042119 GCAAGCTATGTTGGTTTACAAAAACAT 60.042 33.333 8.84 8.84 45.68 2.71
3236 3922 8.487176 CAAGCTATGTTGGTTTACAAAAACATC 58.513 33.333 7.63 0.37 45.68 3.06
3237 3923 7.951591 AGCTATGTTGGTTTACAAAAACATCT 58.048 30.769 7.63 0.63 45.68 2.90
3238 3924 8.421002 AGCTATGTTGGTTTACAAAAACATCTT 58.579 29.630 7.63 1.08 45.68 2.40
3239 3925 9.685828 GCTATGTTGGTTTACAAAAACATCTTA 57.314 29.630 7.63 1.94 45.68 2.10
3243 3929 9.877178 TGTTGGTTTACAAAAACATCTTACATT 57.123 25.926 3.66 0.00 45.68 2.71
3293 3979 0.731417 GCATGCTGCAAGTACTGAGG 59.269 55.000 11.37 0.00 44.26 3.86
3324 4011 6.067350 GCAAATCTCCTCCTGGATAATTCTT 58.933 40.000 0.00 0.00 42.29 2.52
3469 4163 1.000896 CCACCTTACCCCCAAGCAG 60.001 63.158 0.00 0.00 0.00 4.24
3685 4388 3.068590 GCCCACTGTTTCAATATCCATGG 59.931 47.826 4.97 4.97 0.00 3.66
3699 4402 2.591923 TCCATGGCTTTGTTTGTAGCA 58.408 42.857 6.96 0.00 39.15 3.49
4030 4735 5.529800 GTGTGTTCAGGTTACCAAGTTATGT 59.470 40.000 3.51 0.00 0.00 2.29
4364 5070 5.983720 AGTCATTCTATTGGTATGCGTGTAC 59.016 40.000 0.00 0.00 0.00 2.90
4380 5086 2.040939 TGTACGTTCCAGTTTCCTCCA 58.959 47.619 0.00 0.00 0.00 3.86
4391 5097 9.930693 GTTCCAGTTTCCTCCATATAAGTATAG 57.069 37.037 0.00 0.00 0.00 1.31
4393 5099 7.036220 CCAGTTTCCTCCATATAAGTATAGCG 58.964 42.308 0.00 0.00 0.00 4.26
4415 5121 6.192360 GCGAAGTTTATCACGCTGAATAAAT 58.808 36.000 0.00 0.00 46.06 1.40
4446 5152 7.499232 ACACTGAACATCTAAGTTAGCAAAGTT 59.501 33.333 4.93 6.86 32.89 2.66
4474 5180 2.619931 TGTTTCATCCTCCCTCTGACA 58.380 47.619 0.00 0.00 0.00 3.58
4951 5657 4.382754 GCTTTAACAAAAAGGATCACTGCG 59.617 41.667 0.00 0.00 0.00 5.18
5033 5739 2.552743 GCCCATTCCGGTATTTAGCTTC 59.447 50.000 0.00 0.00 0.00 3.86
5050 5756 2.877335 CTTCCCGTTACAGCTGTACTC 58.123 52.381 26.02 19.30 0.00 2.59
5125 5831 0.687427 ACTTTGCACAGCTTTGGGGT 60.687 50.000 1.35 0.00 0.00 4.95
5164 5870 5.873712 AGAGAGTAATCAATTGCTGTCAGTG 59.126 40.000 16.41 0.00 42.45 3.66
5166 5872 6.413052 AGAGTAATCAATTGCTGTCAGTGAT 58.587 36.000 0.00 0.00 32.78 3.06
5167 5873 6.883217 AGAGTAATCAATTGCTGTCAGTGATT 59.117 34.615 16.36 16.36 39.73 2.57
5185 5891 5.540719 AGTGATTACCTACTTGGATAGGAGC 59.459 44.000 5.84 0.00 44.12 4.70
5504 6223 5.297278 AGCTTCATTTTGATCATCAGCTCTC 59.703 40.000 0.00 0.00 31.98 3.20
5518 6239 2.470628 CAGCTCTCGCGTCATTATCTTG 59.529 50.000 5.77 0.00 42.32 3.02
5651 6375 2.203394 CACAGCACCCAGTGGCTT 60.203 61.111 2.61 0.00 38.56 4.35
5660 6384 0.673644 CCCAGTGGCTTTGGTACTCG 60.674 60.000 2.61 0.00 33.73 4.18
5663 6387 0.034896 AGTGGCTTTGGTACTCGGTG 59.965 55.000 0.00 0.00 0.00 4.94
5733 6463 1.885887 CGAAGGAAGAAACCATGGCAA 59.114 47.619 13.04 0.00 0.00 4.52
5734 6464 2.351738 CGAAGGAAGAAACCATGGCAAC 60.352 50.000 13.04 2.88 0.00 4.17
5735 6465 2.683211 AGGAAGAAACCATGGCAACT 57.317 45.000 13.04 5.46 37.61 3.16
5736 6466 2.242043 AGGAAGAAACCATGGCAACTG 58.758 47.619 13.04 0.00 37.61 3.16
5737 6467 2.158475 AGGAAGAAACCATGGCAACTGA 60.158 45.455 13.04 0.00 37.61 3.41
5738 6468 2.627699 GGAAGAAACCATGGCAACTGAA 59.372 45.455 13.04 0.00 37.61 3.02
5739 6469 3.069443 GGAAGAAACCATGGCAACTGAAA 59.931 43.478 13.04 0.00 37.61 2.69
5740 6470 4.262592 GGAAGAAACCATGGCAACTGAAAT 60.263 41.667 13.04 0.00 37.61 2.17
5741 6471 4.525912 AGAAACCATGGCAACTGAAATC 57.474 40.909 13.04 0.00 37.61 2.17
5742 6472 3.259123 AGAAACCATGGCAACTGAAATCC 59.741 43.478 13.04 0.00 37.61 3.01
5743 6473 1.176527 ACCATGGCAACTGAAATCCG 58.823 50.000 13.04 0.00 37.61 4.18
5744 6474 0.179129 CCATGGCAACTGAAATCCGC 60.179 55.000 0.00 0.00 37.61 5.54
5745 6475 0.179129 CATGGCAACTGAAATCCGCC 60.179 55.000 0.00 0.00 43.28 6.13
5746 6476 0.323725 ATGGCAACTGAAATCCGCCT 60.324 50.000 0.00 0.00 43.38 5.52
5747 6477 0.539438 TGGCAACTGAAATCCGCCTT 60.539 50.000 0.00 0.00 43.38 4.35
5748 6478 1.271652 TGGCAACTGAAATCCGCCTTA 60.272 47.619 0.00 0.00 43.38 2.69
5749 6479 2.024414 GGCAACTGAAATCCGCCTTAT 58.976 47.619 0.00 0.00 39.73 1.73
5759 6492 4.724279 AATCCGCCTTATCCACCTTATT 57.276 40.909 0.00 0.00 0.00 1.40
5761 6494 2.036733 TCCGCCTTATCCACCTTATTCG 59.963 50.000 0.00 0.00 0.00 3.34
5778 6511 3.543680 TTCGCCTTATCTTCTTCCTGG 57.456 47.619 0.00 0.00 0.00 4.45
5815 6551 2.432146 CTGAGATCGTCCCTTTCCATGA 59.568 50.000 0.00 0.00 0.00 3.07
5819 6555 1.750193 TCGTCCCTTTCCATGAATGC 58.250 50.000 0.00 0.00 0.00 3.56
5959 6697 2.673610 GCAGCAAGACCTCTCTGTACAG 60.674 54.545 17.17 17.17 0.00 2.74
5960 6698 2.560542 CAGCAAGACCTCTCTGTACAGT 59.439 50.000 21.99 3.43 0.00 3.55
5961 6699 3.759086 CAGCAAGACCTCTCTGTACAGTA 59.241 47.826 21.99 11.01 0.00 2.74
5962 6700 3.759618 AGCAAGACCTCTCTGTACAGTAC 59.240 47.826 21.99 3.49 0.00 2.73
5984 6722 5.348164 ACGTATTTGATTGGGCAAATAAGC 58.652 37.500 16.80 5.56 46.42 3.09
6017 6755 4.816385 TGTCTGTCTGTTGATTGTTCCTTC 59.184 41.667 0.00 0.00 0.00 3.46
6075 6813 3.193157 GCATGTGAATATGCGATGGTC 57.807 47.619 0.00 0.00 43.36 4.02
6121 6861 4.136796 TGGTTGTGAATCTGAACTTCTGG 58.863 43.478 0.00 0.00 0.00 3.86
6148 6888 3.692406 GGGGCGACGAACTGACCT 61.692 66.667 0.00 0.00 0.00 3.85
6219 7000 6.273071 GTGTACATGGCTCTGTTTTTCTTTT 58.727 36.000 0.00 0.00 0.00 2.27
6261 7042 4.083324 TCTGCTGATTTTCGTTCCATGTTC 60.083 41.667 0.00 0.00 0.00 3.18
6342 7123 8.141909 TGTAGGTTATTCTCTCCATTAACATCG 58.858 37.037 0.00 0.00 0.00 3.84
6343 7124 6.525629 AGGTTATTCTCTCCATTAACATCGG 58.474 40.000 0.00 0.00 0.00 4.18
6344 7125 5.701290 GGTTATTCTCTCCATTAACATCGGG 59.299 44.000 0.00 0.00 0.00 5.14
6345 7126 6.289064 GTTATTCTCTCCATTAACATCGGGT 58.711 40.000 0.00 0.00 0.00 5.28
6346 7127 4.837093 TTCTCTCCATTAACATCGGGTT 57.163 40.909 0.00 0.00 43.62 4.11
6347 7128 4.837093 TCTCTCCATTAACATCGGGTTT 57.163 40.909 0.00 0.00 40.96 3.27
6348 7129 5.174037 TCTCTCCATTAACATCGGGTTTT 57.826 39.130 0.00 0.00 40.96 2.43
6349 7130 5.566469 TCTCTCCATTAACATCGGGTTTTT 58.434 37.500 0.00 0.00 40.96 1.94
6370 7151 3.910862 TTTACGCGTCCATTAACATCG 57.089 42.857 18.63 0.00 0.00 3.84
6371 7152 1.842720 TACGCGTCCATTAACATCGG 58.157 50.000 18.63 0.00 0.00 4.18
6372 7153 0.808453 ACGCGTCCATTAACATCGGG 60.808 55.000 5.58 0.00 39.58 5.14
6373 7154 0.808453 CGCGTCCATTAACATCGGGT 60.808 55.000 0.00 0.00 0.00 5.28
6374 7155 1.375551 GCGTCCATTAACATCGGGTT 58.624 50.000 0.00 0.00 43.62 4.11
6375 7156 1.741145 GCGTCCATTAACATCGGGTTT 59.259 47.619 0.00 0.00 40.96 3.27
6376 7157 2.162809 GCGTCCATTAACATCGGGTTTT 59.837 45.455 0.00 0.00 40.96 2.43
6377 7158 3.366577 GCGTCCATTAACATCGGGTTTTT 60.367 43.478 0.00 0.00 40.96 1.94
6413 7194 6.976636 TTAACATCGTTGATCTGTATGCAA 57.023 33.333 0.00 0.00 0.00 4.08
6440 7224 3.851838 GCACACGATGGTTTGTTTGGTAG 60.852 47.826 0.00 0.00 0.00 3.18
6486 7270 4.145807 TGGAAGAAAACCGCCAAATAAGA 58.854 39.130 0.00 0.00 0.00 2.10
6488 7272 5.161358 GGAAGAAAACCGCCAAATAAGAAG 58.839 41.667 0.00 0.00 0.00 2.85
6492 7276 6.235664 AGAAAACCGCCAAATAAGAAGTAGA 58.764 36.000 0.00 0.00 0.00 2.59
6521 7305 1.376942 GCCATCAGTGAGCAGCAGT 60.377 57.895 0.00 0.00 0.00 4.40
6530 7314 1.996191 GTGAGCAGCAGTAGCAGTAAC 59.004 52.381 0.00 0.00 45.49 2.50
6533 7317 2.670414 GAGCAGCAGTAGCAGTAACAAG 59.330 50.000 0.00 0.00 45.49 3.16
6534 7318 2.037772 AGCAGCAGTAGCAGTAACAAGT 59.962 45.455 0.00 0.00 45.49 3.16
6535 7319 2.808543 GCAGCAGTAGCAGTAACAAGTT 59.191 45.455 0.00 0.00 45.49 2.66
6536 7320 3.994392 GCAGCAGTAGCAGTAACAAGTTA 59.006 43.478 0.00 0.00 45.49 2.24
6537 7321 4.451096 GCAGCAGTAGCAGTAACAAGTTAA 59.549 41.667 0.00 0.00 45.49 2.01
6538 7322 5.614887 GCAGCAGTAGCAGTAACAAGTTAAC 60.615 44.000 0.00 0.00 45.49 2.01
6559 7346 5.984695 ACACAGTACTGTACATGATCACT 57.015 39.130 27.48 0.00 42.83 3.41
6566 7353 3.244875 ACTGTACATGATCACTTGGCCAA 60.245 43.478 19.25 19.25 0.00 4.52
6652 7444 2.456364 TGGTCCTCCTGGCCAGAT 59.544 61.111 34.91 0.00 35.58 2.90
6665 7461 0.034059 GCCAGATGGATACGAGTGGG 59.966 60.000 2.18 0.00 42.51 4.61
6695 7491 4.127566 ACAACGTACTTTGTACCACACT 57.872 40.909 15.45 0.00 37.96 3.55
6697 7493 3.102052 ACGTACTTTGTACCACACTGG 57.898 47.619 0.00 0.00 45.02 4.00
6699 7495 2.148768 GTACTTTGTACCACACTGGGC 58.851 52.381 0.00 0.00 43.37 5.36
6753 7557 3.793559 ACGTTAGATGTACAGGCCATTC 58.206 45.455 5.01 0.00 0.00 2.67
6783 7587 0.537188 CGAACCTACCACTGCCAGAT 59.463 55.000 0.00 0.00 0.00 2.90
6787 7591 1.343478 ACCTACCACTGCCAGATAGCT 60.343 52.381 0.00 0.00 0.00 3.32
6797 7601 1.147824 CAGATAGCTGGGCCCAGTG 59.852 63.158 44.45 32.84 45.24 3.66
6801 7605 2.563013 ATAGCTGGGCCCAGTGCAAG 62.563 60.000 44.45 25.64 45.24 4.01
6810 7614 1.946768 GCCCAGTGCAAGCGATATTTA 59.053 47.619 0.00 0.00 40.77 1.40
6811 7615 2.357637 GCCCAGTGCAAGCGATATTTAA 59.642 45.455 0.00 0.00 40.77 1.52
6820 7624 5.066375 TGCAAGCGATATTTAACATGCTCTT 59.934 36.000 0.00 0.00 33.87 2.85
6821 7625 5.973565 GCAAGCGATATTTAACATGCTCTTT 59.026 36.000 0.00 0.00 0.00 2.52
6822 7626 7.132213 GCAAGCGATATTTAACATGCTCTTTA 58.868 34.615 0.00 0.00 0.00 1.85
6941 7773 4.221703 CCCTGCTACTGAGATTAGGTATGG 59.778 50.000 0.00 0.00 0.00 2.74
6966 7798 1.417517 TGCGATCCCAATGCACTAGAT 59.582 47.619 0.00 0.00 32.86 1.98
6980 7812 9.973450 CAATGCACTAGATGTATATACCTATCC 57.027 37.037 10.38 0.00 31.50 2.59
7025 7857 5.335897 CCGGAGCTTTTCAGATTTCATCAAA 60.336 40.000 0.00 0.00 0.00 2.69
7026 7858 5.798934 CGGAGCTTTTCAGATTTCATCAAAG 59.201 40.000 0.00 0.00 0.00 2.77
7027 7859 6.098017 GGAGCTTTTCAGATTTCATCAAAGG 58.902 40.000 0.00 0.00 0.00 3.11
7102 7938 6.265422 ACCCTTTCCAAAAAGAATGTCTAGTG 59.735 38.462 0.00 0.00 43.90 2.74
7130 7966 2.705658 TGAGGTGTGAGGTTCAAGACAT 59.294 45.455 0.00 0.00 0.00 3.06
7183 8020 2.380084 TTTGTCTATGACCTGCCGAC 57.620 50.000 0.00 0.00 0.00 4.79
7185 8022 1.103803 TGTCTATGACCTGCCGACTC 58.896 55.000 0.00 0.00 0.00 3.36
7204 8041 2.719774 GCTTTGTTTCGCGGCATGC 61.720 57.895 9.90 9.90 41.47 4.06
7229 8066 6.051717 CCTAGCATGTAAGTAGCACAAATCT 58.948 40.000 0.00 0.00 0.00 2.40
7236 8073 7.737972 TGTAAGTAGCACAAATCTTTAGCAA 57.262 32.000 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 1.302993 TTGGGCGTAAAGGTCTGGC 60.303 57.895 0.00 0.00 0.00 4.85
101 102 4.889995 AGCCTATCTTGTAAAATCTTGGGC 59.110 41.667 0.00 0.00 35.49 5.36
105 106 5.888161 CACCCAGCCTATCTTGTAAAATCTT 59.112 40.000 0.00 0.00 0.00 2.40
113 114 1.985159 TGAACACCCAGCCTATCTTGT 59.015 47.619 0.00 0.00 0.00 3.16
176 228 5.577945 CACCAATAAGGCAACAATGTGATTC 59.422 40.000 0.00 0.00 43.14 2.52
214 267 7.012327 GCTATTGCACTGAATTATGACCACTTA 59.988 37.037 0.00 0.00 39.41 2.24
402 490 5.412594 TGAAGATGCTAGGACAATTCACAAC 59.587 40.000 4.22 0.00 29.45 3.32
408 496 6.344500 CAGTAGTGAAGATGCTAGGACAATT 58.656 40.000 0.00 0.00 0.00 2.32
427 515 7.387643 AGGGAAGTAAACTCTTAAAGCAGTAG 58.612 38.462 0.00 0.00 0.00 2.57
448 537 4.998051 AGTTTTTCTCATGCCTAAAGGGA 58.002 39.130 0.00 0.00 40.76 4.20
479 568 6.327154 TGTTGAACTACATACGGATGTACTG 58.673 40.000 16.71 10.61 44.77 2.74
486 575 5.186215 TCATTCCTGTTGAACTACATACGGA 59.814 40.000 0.00 0.00 35.31 4.69
488 577 6.961359 TTCATTCCTGTTGAACTACATACG 57.039 37.500 0.00 0.00 35.31 3.06
528 617 2.864114 CCTCAAGTGGCACCATCTG 58.136 57.895 15.27 7.13 0.00 2.90
537 626 3.575687 AGAAGAATTTTGGCCTCAAGTGG 59.424 43.478 3.32 0.00 33.98 4.00
538 627 4.861102 AGAAGAATTTTGGCCTCAAGTG 57.139 40.909 3.32 0.00 33.98 3.16
539 628 5.143369 AGAAGAAGAATTTTGGCCTCAAGT 58.857 37.500 3.32 0.00 33.98 3.16
540 629 5.718724 AGAAGAAGAATTTTGGCCTCAAG 57.281 39.130 3.32 0.00 33.98 3.02
541 630 9.479549 AATATAGAAGAAGAATTTTGGCCTCAA 57.520 29.630 3.32 0.00 0.00 3.02
542 631 9.479549 AAATATAGAAGAAGAATTTTGGCCTCA 57.520 29.630 3.32 0.00 0.00 3.86
543 632 9.958234 GAAATATAGAAGAAGAATTTTGGCCTC 57.042 33.333 3.32 0.00 0.00 4.70
544 633 9.706529 AGAAATATAGAAGAAGAATTTTGGCCT 57.293 29.630 3.32 0.00 0.00 5.19
567 658 4.864806 GCAAGTCGACATCTGACAATAGAA 59.135 41.667 19.50 0.00 38.83 2.10
597 688 5.662456 TCAGATCTTTTCAGATGCAGAGAG 58.338 41.667 0.00 0.00 40.14 3.20
666 757 1.052617 TACACAAGTGGCAGGCTACA 58.947 50.000 10.43 0.00 34.19 2.74
706 802 2.440409 CCACCAGCTACAAATTCTGCT 58.560 47.619 0.00 0.00 36.04 4.24
742 851 0.323360 TGCTTAGCACATTCCCACCC 60.323 55.000 1.39 0.00 31.71 4.61
745 854 2.512692 ACATGCTTAGCACATTCCCA 57.487 45.000 9.82 0.00 43.04 4.37
802 919 7.933577 CCACTGATGATGGTTAATTAGAGCTTA 59.066 37.037 0.00 0.00 32.08 3.09
925 1064 7.222031 CGATTGATTCCATTGTAACTTCGTCTA 59.778 37.037 0.00 0.00 0.00 2.59
938 1077 9.381033 GATAAGATCTGATCGATTGATTCCATT 57.619 33.333 11.73 10.02 34.09 3.16
940 1079 7.326454 GGATAAGATCTGATCGATTGATTCCA 58.674 38.462 13.11 4.74 34.09 3.53
951 1090 4.837860 ACACTCTGGGGATAAGATCTGATC 59.162 45.833 11.31 11.31 0.00 2.92
991 1130 3.879295 ACCGGTCTCTGCATAAATCAATG 59.121 43.478 0.00 0.00 0.00 2.82
1061 1207 0.467290 GGAGACCAACAGGCCAACAA 60.467 55.000 5.01 0.00 0.00 2.83
1075 1221 3.418675 TCGAAAGCGATGTGGAGAC 57.581 52.632 0.00 0.00 42.51 3.36
1103 1249 2.230508 AGCATCGACCGAGACTTAACAA 59.769 45.455 0.00 0.00 0.00 2.83
1112 1263 1.135660 ACGCATATAGCATCGACCGAG 60.136 52.381 0.00 0.00 46.13 4.63
1122 1273 7.535258 CCAAATGTAAGATTTCACGCATATAGC 59.465 37.037 0.00 0.00 40.87 2.97
1129 1280 4.434713 ACCCAAATGTAAGATTTCACGC 57.565 40.909 0.00 0.00 0.00 5.34
1135 1286 5.168647 TGGACGTACCCAAATGTAAGATT 57.831 39.130 0.00 0.00 38.00 2.40
1179 1330 3.489180 CAGCATGCAGGAGAGAAAAAG 57.511 47.619 21.98 0.00 0.00 2.27
1193 1344 5.469084 AGTCAAGTGATATACATGCAGCATG 59.531 40.000 30.34 30.34 46.18 4.06
1194 1345 5.469084 CAGTCAAGTGATATACATGCAGCAT 59.531 40.000 0.52 0.52 0.00 3.79
1195 1346 4.812626 CAGTCAAGTGATATACATGCAGCA 59.187 41.667 0.00 0.00 0.00 4.41
1196 1347 5.052481 TCAGTCAAGTGATATACATGCAGC 58.948 41.667 0.00 0.00 0.00 5.25
1197 1348 6.279123 ACTCAGTCAAGTGATATACATGCAG 58.721 40.000 0.00 0.00 0.00 4.41
1198 1349 6.097412 AGACTCAGTCAAGTGATATACATGCA 59.903 38.462 7.77 0.00 34.60 3.96
1199 1350 6.511416 AGACTCAGTCAAGTGATATACATGC 58.489 40.000 7.77 0.00 34.60 4.06
1200 1351 8.193438 TCAAGACTCAGTCAAGTGATATACATG 58.807 37.037 7.77 0.00 34.60 3.21
1201 1352 8.298729 TCAAGACTCAGTCAAGTGATATACAT 57.701 34.615 7.77 0.00 34.60 2.29
1202 1353 7.703058 TCAAGACTCAGTCAAGTGATATACA 57.297 36.000 7.77 0.00 34.60 2.29
1262 1424 7.978414 TCACTTGACTGAAATTTAACATGCAAA 59.022 29.630 0.00 0.00 0.00 3.68
1282 1444 0.737715 GCGTGGCTAGGTCTCACTTG 60.738 60.000 0.00 0.00 0.00 3.16
1283 1445 1.592223 GCGTGGCTAGGTCTCACTT 59.408 57.895 0.00 0.00 0.00 3.16
1300 1480 8.817876 ACTATAGATAGGTAAAGATTGAAGGGC 58.182 37.037 6.78 0.00 34.69 5.19
1326 1507 8.094284 TCAGGTGAGGTACTATTGTAGTAGTA 57.906 38.462 0.00 0.00 41.55 1.82
1327 1508 6.966751 TCAGGTGAGGTACTATTGTAGTAGT 58.033 40.000 0.00 0.00 41.55 2.73
1328 1509 7.720074 TGATCAGGTGAGGTACTATTGTAGTAG 59.280 40.741 0.00 0.00 41.55 2.57
1336 1521 3.116939 AGGCTGATCAGGTGAGGTACTAT 60.117 47.826 23.89 0.00 41.55 2.12
1345 1530 2.022195 CCAAATCAGGCTGATCAGGTG 58.978 52.381 28.93 21.81 35.76 4.00
1404 1589 1.630126 GCCCATCCTGCTCTTCCTCA 61.630 60.000 0.00 0.00 0.00 3.86
1564 1755 5.788533 TGGAAGAACTTTATTAGAGGGGACA 59.211 40.000 0.00 0.00 0.00 4.02
1568 1759 7.285629 GGGAAATGGAAGAACTTTATTAGAGGG 59.714 40.741 0.00 0.00 0.00 4.30
1574 1765 5.958380 GGGAGGGAAATGGAAGAACTTTATT 59.042 40.000 0.00 0.00 0.00 1.40
1575 1766 5.256389 AGGGAGGGAAATGGAAGAACTTTAT 59.744 40.000 0.00 0.00 0.00 1.40
1593 1784 1.068333 CATCACGCAACAAAAGGGAGG 60.068 52.381 0.00 0.00 0.00 4.30
1594 1785 1.879380 TCATCACGCAACAAAAGGGAG 59.121 47.619 0.00 0.00 0.00 4.30
1602 1795 2.009051 GATCACCATCATCACGCAACA 58.991 47.619 0.00 0.00 0.00 3.33
1661 2313 6.800892 CAGCTATGAGAAAGAACAAAAAGAGC 59.199 38.462 0.00 0.00 0.00 4.09
1680 2332 3.515502 TGCTAGACAAAGGACACAGCTAT 59.484 43.478 0.00 0.00 0.00 2.97
1681 2333 2.897326 TGCTAGACAAAGGACACAGCTA 59.103 45.455 0.00 0.00 0.00 3.32
1682 2334 1.694150 TGCTAGACAAAGGACACAGCT 59.306 47.619 0.00 0.00 0.00 4.24
1683 2335 1.801178 GTGCTAGACAAAGGACACAGC 59.199 52.381 0.00 0.00 37.72 4.40
1684 2336 3.006323 AGAGTGCTAGACAAAGGACACAG 59.994 47.826 0.00 0.00 40.04 3.66
1685 2337 2.965831 AGAGTGCTAGACAAAGGACACA 59.034 45.455 0.00 0.00 40.04 3.72
1686 2338 3.669251 AGAGTGCTAGACAAAGGACAC 57.331 47.619 0.00 0.00 40.04 3.67
1687 2339 3.190744 CGTAGAGTGCTAGACAAAGGACA 59.809 47.826 0.00 0.00 40.04 4.02
1694 2354 3.118371 TCTGGATCGTAGAGTGCTAGACA 60.118 47.826 0.00 0.00 43.63 3.41
1726 2386 1.073763 TGAACATCACCTCCCTGTTGG 59.926 52.381 0.00 0.00 33.46 3.77
1800 2460 2.979678 ACTGTTCATCAAGTACAGGGGT 59.020 45.455 0.00 0.00 46.41 4.95
1841 2501 6.493166 AGAACAGGATTGGATTTTATGGACA 58.507 36.000 0.00 0.00 0.00 4.02
1846 2506 5.594317 CCGGAAGAACAGGATTGGATTTTAT 59.406 40.000 0.00 0.00 35.91 1.40
1847 2507 4.947388 CCGGAAGAACAGGATTGGATTTTA 59.053 41.667 0.00 0.00 35.91 1.52
1856 2516 1.683917 CTCGATCCGGAAGAACAGGAT 59.316 52.381 9.01 0.00 45.64 3.24
1886 2546 0.743701 CTCTGAGGCTCGCAAATGCT 60.744 55.000 10.42 0.00 39.32 3.79
2526 3198 5.428253 AGCAGAACAGTAAAAAGAGACACA 58.572 37.500 0.00 0.00 0.00 3.72
2527 3199 5.993106 AGCAGAACAGTAAAAAGAGACAC 57.007 39.130 0.00 0.00 0.00 3.67
2528 3200 6.823689 AGAAAGCAGAACAGTAAAAAGAGACA 59.176 34.615 0.00 0.00 0.00 3.41
2529 3201 7.225734 AGAGAAAGCAGAACAGTAAAAAGAGAC 59.774 37.037 0.00 0.00 0.00 3.36
2530 3202 7.275920 AGAGAAAGCAGAACAGTAAAAAGAGA 58.724 34.615 0.00 0.00 0.00 3.10
2531 3203 7.225538 TGAGAGAAAGCAGAACAGTAAAAAGAG 59.774 37.037 0.00 0.00 0.00 2.85
2535 3207 6.767902 ACATGAGAGAAAGCAGAACAGTAAAA 59.232 34.615 0.00 0.00 0.00 1.52
2655 3332 7.942990 AGTACAAGATGTGGCTAATAGTAGTC 58.057 38.462 0.00 0.00 32.14 2.59
2656 3333 7.899648 AGTACAAGATGTGGCTAATAGTAGT 57.100 36.000 0.00 0.00 0.00 2.73
2657 3334 9.680315 GTAAGTACAAGATGTGGCTAATAGTAG 57.320 37.037 0.00 0.00 0.00 2.57
2723 3403 5.974751 GTCTATCACACTCTTCCGAATCTTC 59.025 44.000 0.00 0.00 0.00 2.87
2982 3668 2.158957 GCAGGATCGTTCAACCCTCATA 60.159 50.000 0.00 0.00 0.00 2.15
3075 3761 9.810231 GCTTTTAATTCATACCAAAACATGTTG 57.190 29.630 12.82 0.53 0.00 3.33
3162 3848 1.555075 GGGAGTAGATGTGAACCAGCA 59.445 52.381 0.00 0.00 0.00 4.41
3176 3862 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
3177 3863 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
3178 3864 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3179 3865 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3180 3866 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3181 3867 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
3182 3868 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
3183 3869 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
3186 3872 5.798434 GCAAAAACGTCTTACATTATGGGAC 59.202 40.000 0.00 1.75 0.00 4.46
3187 3873 5.473846 TGCAAAAACGTCTTACATTATGGGA 59.526 36.000 0.00 0.00 0.00 4.37
3188 3874 5.704888 TGCAAAAACGTCTTACATTATGGG 58.295 37.500 0.00 0.00 0.00 4.00
3189 3875 6.183359 GCTTGCAAAAACGTCTTACATTATGG 60.183 38.462 0.00 0.00 0.00 2.74
3190 3876 6.582295 AGCTTGCAAAAACGTCTTACATTATG 59.418 34.615 0.00 0.00 0.00 1.90
3191 3877 6.677913 AGCTTGCAAAAACGTCTTACATTAT 58.322 32.000 0.00 0.00 0.00 1.28
3192 3878 6.067263 AGCTTGCAAAAACGTCTTACATTA 57.933 33.333 0.00 0.00 0.00 1.90
3193 3879 4.932146 AGCTTGCAAAAACGTCTTACATT 58.068 34.783 0.00 0.00 0.00 2.71
3194 3880 4.568152 AGCTTGCAAAAACGTCTTACAT 57.432 36.364 0.00 0.00 0.00 2.29
3195 3881 5.008217 ACATAGCTTGCAAAAACGTCTTACA 59.992 36.000 0.00 0.00 0.00 2.41
3196 3882 5.449304 ACATAGCTTGCAAAAACGTCTTAC 58.551 37.500 0.00 0.00 0.00 2.34
3197 3883 5.682943 ACATAGCTTGCAAAAACGTCTTA 57.317 34.783 0.00 0.00 0.00 2.10
3198 3884 4.568152 ACATAGCTTGCAAAAACGTCTT 57.432 36.364 0.00 0.00 0.00 3.01
3199 3885 4.290155 CAACATAGCTTGCAAAAACGTCT 58.710 39.130 0.00 0.00 0.00 4.18
3200 3886 3.425193 CCAACATAGCTTGCAAAAACGTC 59.575 43.478 0.00 0.00 0.00 4.34
3201 3887 3.181480 ACCAACATAGCTTGCAAAAACGT 60.181 39.130 0.00 0.00 0.00 3.99
3202 3888 3.380142 ACCAACATAGCTTGCAAAAACG 58.620 40.909 0.00 0.00 0.00 3.60
3203 3889 5.733226 AAACCAACATAGCTTGCAAAAAC 57.267 34.783 0.00 0.00 0.00 2.43
3204 3890 6.341316 TGTAAACCAACATAGCTTGCAAAAA 58.659 32.000 0.00 0.00 0.00 1.94
3205 3891 5.907207 TGTAAACCAACATAGCTTGCAAAA 58.093 33.333 0.00 0.00 0.00 2.44
3206 3892 5.521906 TGTAAACCAACATAGCTTGCAAA 57.478 34.783 0.00 0.00 0.00 3.68
3207 3893 5.521906 TTGTAAACCAACATAGCTTGCAA 57.478 34.783 0.00 0.00 0.00 4.08
3208 3894 5.521906 TTTGTAAACCAACATAGCTTGCA 57.478 34.783 0.00 0.00 31.20 4.08
3209 3895 6.256757 TGTTTTTGTAAACCAACATAGCTTGC 59.743 34.615 0.00 0.00 42.39 4.01
3210 3896 7.763172 TGTTTTTGTAAACCAACATAGCTTG 57.237 32.000 0.00 0.00 42.39 4.01
3211 3897 8.421002 AGATGTTTTTGTAAACCAACATAGCTT 58.579 29.630 0.00 0.00 39.08 3.74
3212 3898 7.951591 AGATGTTTTTGTAAACCAACATAGCT 58.048 30.769 7.16 0.00 39.08 3.32
3213 3899 8.587952 AAGATGTTTTTGTAAACCAACATAGC 57.412 30.769 7.16 0.00 39.08 2.97
3217 3903 9.877178 AATGTAAGATGTTTTTGTAAACCAACA 57.123 25.926 0.00 0.00 42.39 3.33
3225 3911 9.521841 TGTCCCATAATGTAAGATGTTTTTGTA 57.478 29.630 0.00 0.00 0.00 2.41
3226 3912 8.415950 TGTCCCATAATGTAAGATGTTTTTGT 57.584 30.769 0.00 0.00 0.00 2.83
3227 3913 8.739039 TCTGTCCCATAATGTAAGATGTTTTTG 58.261 33.333 0.00 0.00 0.00 2.44
3228 3914 8.877864 TCTGTCCCATAATGTAAGATGTTTTT 57.122 30.769 0.00 0.00 0.00 1.94
3229 3915 8.109634 ACTCTGTCCCATAATGTAAGATGTTTT 58.890 33.333 0.00 0.00 0.00 2.43
3230 3916 7.633789 ACTCTGTCCCATAATGTAAGATGTTT 58.366 34.615 0.00 0.00 0.00 2.83
3231 3917 7.200434 ACTCTGTCCCATAATGTAAGATGTT 57.800 36.000 0.00 0.00 0.00 2.71
3232 3918 6.814954 ACTCTGTCCCATAATGTAAGATGT 57.185 37.500 0.00 0.00 0.00 3.06
3233 3919 7.957002 ACTACTCTGTCCCATAATGTAAGATG 58.043 38.462 0.00 0.00 0.00 2.90
3234 3920 9.303116 CTACTACTCTGTCCCATAATGTAAGAT 57.697 37.037 0.00 0.00 0.00 2.40
3235 3921 7.230913 GCTACTACTCTGTCCCATAATGTAAGA 59.769 40.741 0.00 0.00 0.00 2.10
3236 3922 7.014326 TGCTACTACTCTGTCCCATAATGTAAG 59.986 40.741 0.00 0.00 0.00 2.34
3237 3923 6.837048 TGCTACTACTCTGTCCCATAATGTAA 59.163 38.462 0.00 0.00 0.00 2.41
3238 3924 6.370453 TGCTACTACTCTGTCCCATAATGTA 58.630 40.000 0.00 0.00 0.00 2.29
3239 3925 5.208890 TGCTACTACTCTGTCCCATAATGT 58.791 41.667 0.00 0.00 0.00 2.71
3240 3926 5.536538 TCTGCTACTACTCTGTCCCATAATG 59.463 44.000 0.00 0.00 0.00 1.90
3241 3927 5.536916 GTCTGCTACTACTCTGTCCCATAAT 59.463 44.000 0.00 0.00 0.00 1.28
3242 3928 4.888239 GTCTGCTACTACTCTGTCCCATAA 59.112 45.833 0.00 0.00 0.00 1.90
3243 3929 4.166337 AGTCTGCTACTACTCTGTCCCATA 59.834 45.833 0.00 0.00 36.36 2.74
3244 3930 3.053245 AGTCTGCTACTACTCTGTCCCAT 60.053 47.826 0.00 0.00 36.36 4.00
3245 3931 2.309162 AGTCTGCTACTACTCTGTCCCA 59.691 50.000 0.00 0.00 36.36 4.37
3246 3932 3.007473 AGTCTGCTACTACTCTGTCCC 57.993 52.381 0.00 0.00 36.36 4.46
3247 3933 5.026038 TCTAGTCTGCTACTACTCTGTCC 57.974 47.826 0.00 0.00 39.80 4.02
3248 3934 6.342906 TCTTCTAGTCTGCTACTACTCTGTC 58.657 44.000 0.00 0.00 39.80 3.51
3249 3935 6.302535 TCTTCTAGTCTGCTACTACTCTGT 57.697 41.667 0.00 0.00 39.80 3.41
3250 3936 6.293407 GCATCTTCTAGTCTGCTACTACTCTG 60.293 46.154 0.00 0.00 39.80 3.35
3251 3937 5.763204 GCATCTTCTAGTCTGCTACTACTCT 59.237 44.000 0.00 0.00 39.80 3.24
3252 3938 5.529430 TGCATCTTCTAGTCTGCTACTACTC 59.471 44.000 8.99 0.00 39.80 2.59
3253 3939 5.441500 TGCATCTTCTAGTCTGCTACTACT 58.558 41.667 8.99 0.00 39.80 2.57
3254 3940 5.759506 TGCATCTTCTAGTCTGCTACTAC 57.240 43.478 8.99 0.00 39.80 2.73
3255 3941 5.278709 GCATGCATCTTCTAGTCTGCTACTA 60.279 44.000 14.21 0.53 39.80 1.82
3256 3942 4.501229 GCATGCATCTTCTAGTCTGCTACT 60.501 45.833 14.21 0.00 42.62 2.57
3257 3943 3.740321 GCATGCATCTTCTAGTCTGCTAC 59.260 47.826 14.21 0.00 35.66 3.58
3293 3979 0.106967 GGAGGAGATTTGCTGGGGAC 60.107 60.000 0.00 0.00 0.00 4.46
3334 4021 8.490311 TCCCAAATTGTTATTCACTTTTTCCTT 58.510 29.630 0.00 0.00 28.69 3.36
3469 4163 6.260271 GGTAAGAATTAATCCTACACTGGCAC 59.740 42.308 0.00 0.00 28.70 5.01
3598 4293 9.448438 ACAAAATCACAATATCTACAGTAAGCA 57.552 29.630 0.00 0.00 0.00 3.91
3623 4318 0.243636 CAAGCGTCCAATTCCCCAAC 59.756 55.000 0.00 0.00 0.00 3.77
3685 4388 5.862924 TCTACTGATGCTACAAACAAAGC 57.137 39.130 0.00 0.00 39.25 3.51
3699 4402 7.969690 TGGAGAAAAGAGAAGATCTACTGAT 57.030 36.000 0.00 0.00 37.23 2.90
3748 4451 6.325919 TGGTCAAACCTACATGAATGAAAC 57.674 37.500 0.00 0.00 39.58 2.78
4005 4710 3.926058 ACTTGGTAACCTGAACACACT 57.074 42.857 0.00 0.00 0.00 3.55
4229 4934 2.629051 CCGCCTAGGAAGTTCGAAAAT 58.371 47.619 14.75 0.00 45.00 1.82
4364 5070 5.671493 ACTTATATGGAGGAAACTGGAACG 58.329 41.667 0.00 0.00 44.43 3.95
4380 5086 9.286946 GCGTGATAAACTTCGCTATACTTATAT 57.713 33.333 0.00 0.00 44.28 0.86
4393 5099 9.159470 GCTTATTTATTCAGCGTGATAAACTTC 57.841 33.333 4.36 0.00 0.00 3.01
4415 5121 6.590292 GCTAACTTAGATGTTCAGTGTGCTTA 59.410 38.462 0.00 0.00 0.00 3.09
4446 5152 2.618816 GGGAGGATGAAACATGCACTGA 60.619 50.000 6.09 0.00 0.00 3.41
4493 5199 5.841957 ATATTGTTGAAATGTCCTCCTGC 57.158 39.130 0.00 0.00 0.00 4.85
4951 5657 1.067821 CGGACCTTCTGGATGCTCTAC 59.932 57.143 0.00 0.00 37.04 2.59
5033 5739 0.524862 ACGAGTACAGCTGTAACGGG 59.475 55.000 35.27 24.91 37.11 5.28
5050 5756 4.580995 AGAAGATGTGAGTATGAGGGTACG 59.419 45.833 0.00 0.00 0.00 3.67
5143 5849 6.674694 ATCACTGACAGCAATTGATTACTC 57.325 37.500 10.34 0.00 0.00 2.59
5164 5870 4.082136 CCGCTCCTATCCAAGTAGGTAATC 60.082 50.000 0.35 0.00 41.65 1.75
5166 5872 3.228453 CCGCTCCTATCCAAGTAGGTAA 58.772 50.000 0.35 0.00 41.65 2.85
5167 5873 2.176364 ACCGCTCCTATCCAAGTAGGTA 59.824 50.000 0.35 0.00 41.65 3.08
5213 5919 8.063200 AGAGCAACTGTACATATGTAACAGTA 57.937 34.615 30.19 9.59 39.53 2.74
5459 6178 1.198759 GCCACAACTCCCTCCCAGTA 61.199 60.000 0.00 0.00 0.00 2.74
5504 6223 4.779082 GCAAGTGTACAAGATAATGACGCG 60.779 45.833 3.53 3.53 0.00 6.01
5518 6239 3.366374 GGGCAAAAGATGAGCAAGTGTAC 60.366 47.826 0.00 0.00 0.00 2.90
5547 6271 2.094545 GCCCAAGATGCTTGTACCTTTG 60.095 50.000 6.44 0.00 0.00 2.77
5548 6272 2.171003 GCCCAAGATGCTTGTACCTTT 58.829 47.619 6.44 0.00 0.00 3.11
5660 6384 2.071540 GGTTCTTACCTTGCGTACACC 58.928 52.381 0.00 0.00 41.53 4.16
5663 6387 3.370061 GTCATGGTTCTTACCTTGCGTAC 59.630 47.826 5.58 0.00 44.96 3.67
5733 6463 2.421529 GGTGGATAAGGCGGATTTCAGT 60.422 50.000 0.00 0.00 0.00 3.41
5734 6464 2.158755 AGGTGGATAAGGCGGATTTCAG 60.159 50.000 0.00 0.00 0.00 3.02
5735 6465 1.843851 AGGTGGATAAGGCGGATTTCA 59.156 47.619 0.00 0.00 0.00 2.69
5736 6466 2.640316 AGGTGGATAAGGCGGATTTC 57.360 50.000 0.00 0.00 0.00 2.17
5737 6467 4.724279 ATAAGGTGGATAAGGCGGATTT 57.276 40.909 0.00 0.00 0.00 2.17
5738 6468 4.652822 GAATAAGGTGGATAAGGCGGATT 58.347 43.478 0.00 0.00 0.00 3.01
5739 6469 3.306780 CGAATAAGGTGGATAAGGCGGAT 60.307 47.826 0.00 0.00 0.00 4.18
5740 6470 2.036733 CGAATAAGGTGGATAAGGCGGA 59.963 50.000 0.00 0.00 0.00 5.54
5741 6471 2.413837 CGAATAAGGTGGATAAGGCGG 58.586 52.381 0.00 0.00 0.00 6.13
5742 6472 1.798813 GCGAATAAGGTGGATAAGGCG 59.201 52.381 0.00 0.00 0.00 5.52
5743 6473 2.152016 GGCGAATAAGGTGGATAAGGC 58.848 52.381 0.00 0.00 0.00 4.35
5744 6474 3.771577 AGGCGAATAAGGTGGATAAGG 57.228 47.619 0.00 0.00 0.00 2.69
5745 6475 6.702329 AGATAAGGCGAATAAGGTGGATAAG 58.298 40.000 0.00 0.00 0.00 1.73
5746 6476 6.681729 AGATAAGGCGAATAAGGTGGATAA 57.318 37.500 0.00 0.00 0.00 1.75
5747 6477 6.497259 AGAAGATAAGGCGAATAAGGTGGATA 59.503 38.462 0.00 0.00 0.00 2.59
5748 6478 5.308237 AGAAGATAAGGCGAATAAGGTGGAT 59.692 40.000 0.00 0.00 0.00 3.41
5749 6479 4.654262 AGAAGATAAGGCGAATAAGGTGGA 59.346 41.667 0.00 0.00 0.00 4.02
5759 6492 1.762957 CCCAGGAAGAAGATAAGGCGA 59.237 52.381 0.00 0.00 0.00 5.54
5761 6494 2.483889 CGACCCAGGAAGAAGATAAGGC 60.484 54.545 0.00 0.00 0.00 4.35
5778 6511 0.947180 TCAGTTGCGGCTAAACGACC 60.947 55.000 0.00 0.00 35.47 4.79
5819 6555 0.958876 TCACCTGCTTGCTGCTCATG 60.959 55.000 0.00 0.00 43.37 3.07
5945 6683 6.093219 TCAAATACGTACTGTACAGAGAGGTC 59.907 42.308 29.30 10.71 35.44 3.85
5959 6697 6.416750 GCTTATTTGCCCAATCAAATACGTAC 59.583 38.462 0.00 0.00 44.14 3.67
5960 6698 6.095580 TGCTTATTTGCCCAATCAAATACGTA 59.904 34.615 0.00 0.00 44.14 3.57
5961 6699 5.105554 TGCTTATTTGCCCAATCAAATACGT 60.106 36.000 8.05 0.00 44.14 3.57
5962 6700 5.347342 TGCTTATTTGCCCAATCAAATACG 58.653 37.500 8.05 7.91 44.14 3.06
5984 6722 0.873054 CAGACAGACAGCCTTGCTTG 59.127 55.000 0.00 0.00 36.40 4.01
6017 6755 3.612247 CTCCGTTGGCAGGACAGGG 62.612 68.421 0.00 0.00 33.58 4.45
6068 6806 3.066621 CAGAGAAGAGAAGAGGACCATCG 59.933 52.174 0.00 0.00 0.00 3.84
6074 6812 4.022603 CACATCCAGAGAAGAGAAGAGGA 58.977 47.826 0.00 0.00 0.00 3.71
6075 6813 3.132646 CCACATCCAGAGAAGAGAAGAGG 59.867 52.174 0.00 0.00 0.00 3.69
6121 6861 4.509737 GTCGCCCCAGGTACGCTC 62.510 72.222 0.00 0.00 0.00 5.03
6148 6888 1.423541 ACCAATGAACTGTGGGCACTA 59.576 47.619 0.00 0.00 39.39 2.74
6219 7000 4.677779 GCAGAGCCAGTTCAAAACAAGAAA 60.678 41.667 0.00 0.00 0.00 2.52
6261 7042 3.447229 GGGGGTCCACTAACAATGAAATG 59.553 47.826 0.00 0.00 0.00 2.32
6348 7129 4.435784 CCGATGTTAATGGACGCGTAAAAA 60.436 41.667 13.97 0.00 0.00 1.94
6349 7130 3.062369 CCGATGTTAATGGACGCGTAAAA 59.938 43.478 13.97 0.00 0.00 1.52
6350 7131 2.604011 CCGATGTTAATGGACGCGTAAA 59.396 45.455 13.97 3.08 0.00 2.01
6351 7132 2.195096 CCGATGTTAATGGACGCGTAA 58.805 47.619 13.97 3.55 0.00 3.18
6352 7133 1.536496 CCCGATGTTAATGGACGCGTA 60.536 52.381 13.97 0.00 0.00 4.42
6353 7134 0.808453 CCCGATGTTAATGGACGCGT 60.808 55.000 13.85 13.85 0.00 6.01
6354 7135 0.808453 ACCCGATGTTAATGGACGCG 60.808 55.000 3.53 3.53 0.00 6.01
6355 7136 1.375551 AACCCGATGTTAATGGACGC 58.624 50.000 0.00 0.00 34.69 5.19
6356 7137 4.428615 AAAAACCCGATGTTAATGGACG 57.571 40.909 0.00 0.00 35.67 4.79
6376 7157 4.152045 ACGATGTTAATGGACGCGTAAAAA 59.848 37.500 13.97 0.00 33.46 1.94
6377 7158 3.679025 ACGATGTTAATGGACGCGTAAAA 59.321 39.130 13.97 0.00 33.46 1.52
6378 7159 3.252400 ACGATGTTAATGGACGCGTAAA 58.748 40.909 13.97 3.08 33.46 2.01
6379 7160 2.878580 ACGATGTTAATGGACGCGTAA 58.121 42.857 13.97 3.55 33.46 3.18
6380 7161 2.565210 ACGATGTTAATGGACGCGTA 57.435 45.000 13.97 0.00 33.46 4.42
6381 7162 1.392168 CAACGATGTTAATGGACGCGT 59.608 47.619 13.85 13.85 35.61 6.01
6382 7163 1.656594 TCAACGATGTTAATGGACGCG 59.343 47.619 3.53 3.53 0.00 6.01
6383 7164 3.555956 AGATCAACGATGTTAATGGACGC 59.444 43.478 0.00 0.00 0.00 5.19
6384 7165 4.566759 ACAGATCAACGATGTTAATGGACG 59.433 41.667 0.00 0.00 0.00 4.79
6385 7166 7.567571 CATACAGATCAACGATGTTAATGGAC 58.432 38.462 0.00 0.00 0.00 4.02
6386 7167 6.202762 GCATACAGATCAACGATGTTAATGGA 59.797 38.462 0.00 0.00 0.00 3.41
6387 7168 6.018016 TGCATACAGATCAACGATGTTAATGG 60.018 38.462 0.00 0.00 0.00 3.16
6388 7169 6.947258 TGCATACAGATCAACGATGTTAATG 58.053 36.000 0.00 0.00 0.00 1.90
6389 7170 7.409697 GTTGCATACAGATCAACGATGTTAAT 58.590 34.615 0.00 0.00 32.10 1.40
6390 7171 6.771076 GTTGCATACAGATCAACGATGTTAA 58.229 36.000 0.00 0.00 32.10 2.01
6391 7172 6.344572 GTTGCATACAGATCAACGATGTTA 57.655 37.500 0.00 0.00 32.10 2.41
6392 7173 5.221891 GTTGCATACAGATCAACGATGTT 57.778 39.130 0.00 0.00 32.10 2.71
6393 7174 4.864916 GTTGCATACAGATCAACGATGT 57.135 40.909 0.00 0.00 32.10 3.06
6424 7208 4.760204 ACTACTGCTACCAAACAAACCATC 59.240 41.667 0.00 0.00 0.00 3.51
6425 7209 4.725490 ACTACTGCTACCAAACAAACCAT 58.275 39.130 0.00 0.00 0.00 3.55
6440 7224 1.884235 AAACCAGCACTGACTACTGC 58.116 50.000 0.00 0.00 0.00 4.40
6486 7270 1.003118 TGGCCAAAGTCGCATCTACTT 59.997 47.619 0.61 0.00 38.82 2.24
6488 7272 1.599542 GATGGCCAAAGTCGCATCTAC 59.400 52.381 10.96 0.00 0.00 2.59
6492 7276 0.322816 ACTGATGGCCAAAGTCGCAT 60.323 50.000 10.96 0.00 0.00 4.73
6521 7305 7.650504 CAGTACTGTGTTAACTTGTTACTGCTA 59.349 37.037 15.06 3.59 0.00 3.49
6530 7314 7.940178 TCATGTACAGTACTGTGTTAACTTG 57.060 36.000 33.77 27.76 44.63 3.16
6533 7317 7.813148 AGTGATCATGTACAGTACTGTGTTAAC 59.187 37.037 33.77 24.60 44.63 2.01
6534 7318 7.892609 AGTGATCATGTACAGTACTGTGTTAA 58.107 34.615 33.77 18.46 44.63 2.01
6535 7319 7.462571 AGTGATCATGTACAGTACTGTGTTA 57.537 36.000 33.77 21.09 44.63 2.41
6536 7320 6.346477 AGTGATCATGTACAGTACTGTGTT 57.654 37.500 33.77 17.66 44.63 3.32
6537 7321 5.984695 AGTGATCATGTACAGTACTGTGT 57.015 39.130 33.77 18.87 44.63 3.72
6538 7322 5.578336 CCAAGTGATCATGTACAGTACTGTG 59.422 44.000 33.77 19.52 44.63 3.66
6559 7346 1.483415 GATACCCGTAGAGTTGGCCAA 59.517 52.381 16.05 16.05 0.00 4.52
6601 7388 0.947180 ACGTACACGCCAATCACCAC 60.947 55.000 0.85 0.00 44.43 4.16
6652 7444 1.760875 GAGCCCCCACTCGTATCCA 60.761 63.158 0.00 0.00 0.00 3.41
6665 7461 0.244721 AAGTACGTTGTACCGAGCCC 59.755 55.000 0.00 0.00 0.00 5.19
6699 7495 2.693250 TTCACTGTCACTGACGCCCG 62.693 60.000 4.71 0.00 34.95 6.13
6705 7501 4.468868 AGATGGATCATTCACTGTCACTGA 59.531 41.667 0.00 0.00 0.00 3.41
6707 7503 4.141756 GGAGATGGATCATTCACTGTCACT 60.142 45.833 0.00 0.00 0.00 3.41
6708 7504 4.125703 GGAGATGGATCATTCACTGTCAC 58.874 47.826 0.00 0.00 0.00 3.67
6709 7505 4.035814 AGGAGATGGATCATTCACTGTCA 58.964 43.478 0.00 0.00 0.00 3.58
6710 7506 4.686191 AGGAGATGGATCATTCACTGTC 57.314 45.455 0.00 0.00 0.00 3.51
6711 7507 4.038522 CGTAGGAGATGGATCATTCACTGT 59.961 45.833 0.00 0.00 0.00 3.55
6753 7557 1.479730 GGTAGGTTCGTTCTACCCTGG 59.520 57.143 15.56 0.00 46.75 4.45
6797 7601 5.100751 AGAGCATGTTAAATATCGCTTGC 57.899 39.130 0.00 0.00 33.85 4.01
6922 7754 4.815269 CTGCCATACCTAATCTCAGTAGC 58.185 47.826 0.00 0.00 0.00 3.58
6926 7758 3.661944 CAGCTGCCATACCTAATCTCAG 58.338 50.000 0.00 0.00 0.00 3.35
6941 7773 2.719979 CATTGGGATCGCAGCTGC 59.280 61.111 29.12 29.12 37.78 5.25
6966 7798 8.863086 ACTAACTTTTGCGGATAGGTATATACA 58.137 33.333 14.70 0.00 0.00 2.29
6980 7812 2.604614 GGGACAAGCACTAACTTTTGCG 60.605 50.000 0.00 0.00 43.87 4.85
7025 7857 5.411053 CGAAATGCTCTTTTCTTCTTCTCCT 59.589 40.000 6.66 0.00 34.19 3.69
7026 7858 5.409826 TCGAAATGCTCTTTTCTTCTTCTCC 59.590 40.000 6.66 0.00 34.19 3.71
7027 7859 6.367422 TCTCGAAATGCTCTTTTCTTCTTCTC 59.633 38.462 6.66 0.00 34.19 2.87
7102 7938 1.673665 CCTCACACCTCAAGCCTGC 60.674 63.158 0.00 0.00 0.00 4.85
7204 8041 3.819564 TGTGCTACTTACATGCTAGGG 57.180 47.619 0.00 0.00 0.00 3.53
7211 8048 7.921786 TGCTAAAGATTTGTGCTACTTACAT 57.078 32.000 0.00 0.00 0.00 2.29
7212 8049 7.737972 TTGCTAAAGATTTGTGCTACTTACA 57.262 32.000 0.00 0.00 0.00 2.41
7213 8050 9.626045 ATTTTGCTAAAGATTTGTGCTACTTAC 57.374 29.630 0.00 0.00 0.00 2.34
7229 8066 9.575783 ACGTGTTCTTTCTTTAATTTTGCTAAA 57.424 25.926 0.00 0.00 0.00 1.85
7236 8073 6.754675 CCACCAACGTGTTCTTTCTTTAATTT 59.245 34.615 0.00 0.00 38.41 1.82
7248 8085 1.355210 CAGCACCACCAACGTGTTC 59.645 57.895 0.00 0.00 38.41 3.18
7253 8090 0.665835 TAAAAGCAGCACCACCAACG 59.334 50.000 0.00 0.00 0.00 4.10
7284 8123 9.129209 GGTTAGAGAATTGTTAATCAAAGCAAC 57.871 33.333 0.00 0.00 39.62 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.