Multiple sequence alignment - TraesCS7D01G435900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G435900 chr7D 100.000 2279 0 0 1 2279 554898137 554895859 0.000000e+00 4209.0
1 TraesCS7D01G435900 chr7B 85.752 1516 132 45 572 2042 601254676 601256152 0.000000e+00 1526.0
2 TraesCS7D01G435900 chr7B 90.385 52 4 1 253 303 63981009 63980958 1.460000e-07 67.6
3 TraesCS7D01G435900 chr7A 83.861 1295 82 40 572 1802 641016168 641017399 0.000000e+00 1116.0
4 TraesCS7D01G435900 chr7A 89.809 471 25 6 1826 2279 641017456 641017920 1.170000e-162 582.0
5 TraesCS7D01G435900 chr7A 94.318 88 2 2 476 561 641015997 641016083 5.110000e-27 132.0
6 TraesCS7D01G435900 chr5A 87.671 73 7 2 1456 1527 707084564 707084635 1.450000e-12 84.2
7 TraesCS7D01G435900 chr5A 91.667 48 3 1 257 304 315267730 315267776 5.250000e-07 65.8
8 TraesCS7D01G435900 chr5A 87.273 55 6 1 250 304 462150520 462150467 6.800000e-06 62.1
9 TraesCS7D01G435900 chr6D 92.453 53 2 2 255 307 410398622 410398572 8.730000e-10 75.0
10 TraesCS7D01G435900 chr6D 90.000 50 5 0 255 304 410398619 410398668 5.250000e-07 65.8
11 TraesCS7D01G435900 chr4B 93.750 48 3 0 257 304 472388215 472388262 3.140000e-09 73.1
12 TraesCS7D01G435900 chr2D 93.750 48 3 0 1477 1524 19232683 19232730 3.140000e-09 73.1
13 TraesCS7D01G435900 chr3B 91.667 48 3 1 260 307 190470320 190470274 5.250000e-07 65.8
14 TraesCS7D01G435900 chr3A 91.667 48 3 1 260 307 147790929 147790883 5.250000e-07 65.8
15 TraesCS7D01G435900 chr2B 91.667 48 3 1 1477 1524 25766449 25766495 5.250000e-07 65.8
16 TraesCS7D01G435900 chr2B 86.667 60 7 1 249 307 338755759 338755700 5.250000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G435900 chr7D 554895859 554898137 2278 True 4209 4209 100.000000 1 2279 1 chr7D.!!$R1 2278
1 TraesCS7D01G435900 chr7B 601254676 601256152 1476 False 1526 1526 85.752000 572 2042 1 chr7B.!!$F1 1470
2 TraesCS7D01G435900 chr7A 641015997 641017920 1923 False 610 1116 89.329333 476 2279 3 chr7A.!!$F1 1803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 1066 0.034767 ACCACCACCATCATCAGCAG 60.035 55.0 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 2427 0.743345 GTCCCGATTGAGAAACCCCG 60.743 60.0 0.0 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 8.648557 AAAGGTGAATTTGTTTTTCTAAGAGC 57.351 30.769 0.00 0.00 0.00 4.09
58 59 6.749139 AGGTGAATTTGTTTTTCTAAGAGCC 58.251 36.000 0.00 0.00 0.00 4.70
59 60 6.551227 AGGTGAATTTGTTTTTCTAAGAGCCT 59.449 34.615 0.00 0.00 0.00 4.58
60 61 7.724061 AGGTGAATTTGTTTTTCTAAGAGCCTA 59.276 33.333 0.00 0.00 0.00 3.93
61 62 8.357402 GGTGAATTTGTTTTTCTAAGAGCCTAA 58.643 33.333 0.00 0.00 0.00 2.69
62 63 9.914131 GTGAATTTGTTTTTCTAAGAGCCTAAT 57.086 29.630 0.00 0.00 0.00 1.73
63 64 9.912634 TGAATTTGTTTTTCTAAGAGCCTAATG 57.087 29.630 0.00 0.00 0.00 1.90
77 78 7.573968 AGAGCCTAATGATTTATGTTTGACC 57.426 36.000 0.00 0.00 0.00 4.02
78 79 7.118723 AGAGCCTAATGATTTATGTTTGACCA 58.881 34.615 0.00 0.00 0.00 4.02
79 80 7.615365 AGAGCCTAATGATTTATGTTTGACCAA 59.385 33.333 0.00 0.00 0.00 3.67
80 81 7.775120 AGCCTAATGATTTATGTTTGACCAAG 58.225 34.615 0.00 0.00 0.00 3.61
81 82 6.476706 GCCTAATGATTTATGTTTGACCAAGC 59.523 38.462 0.00 0.00 0.00 4.01
82 83 7.631377 GCCTAATGATTTATGTTTGACCAAGCT 60.631 37.037 0.00 0.00 0.00 3.74
83 84 8.253113 CCTAATGATTTATGTTTGACCAAGCTT 58.747 33.333 0.00 0.00 0.00 3.74
86 87 9.995003 AATGATTTATGTTTGACCAAGCTTAAA 57.005 25.926 0.00 14.80 36.43 1.52
87 88 9.643693 ATGATTTATGTTTGACCAAGCTTAAAG 57.356 29.630 16.38 0.00 35.92 1.85
88 89 8.087750 TGATTTATGTTTGACCAAGCTTAAAGG 58.912 33.333 16.38 0.00 35.92 3.11
89 90 7.589958 TTTATGTTTGACCAAGCTTAAAGGA 57.410 32.000 8.24 0.00 32.10 3.36
90 91 7.589958 TTATGTTTGACCAAGCTTAAAGGAA 57.410 32.000 8.24 0.00 0.00 3.36
91 92 5.923733 TGTTTGACCAAGCTTAAAGGAAA 57.076 34.783 8.24 0.41 0.00 3.13
92 93 5.901552 TGTTTGACCAAGCTTAAAGGAAAG 58.098 37.500 8.24 0.00 0.00 2.62
104 105 7.601073 GCTTAAAGGAAAGCTTGCATAAAAT 57.399 32.000 6.80 0.00 46.74 1.82
105 106 8.702163 GCTTAAAGGAAAGCTTGCATAAAATA 57.298 30.769 6.80 0.00 46.74 1.40
106 107 8.595533 GCTTAAAGGAAAGCTTGCATAAAATAC 58.404 33.333 6.80 0.00 46.74 1.89
107 108 8.682128 TTAAAGGAAAGCTTGCATAAAATACG 57.318 30.769 6.80 0.00 0.00 3.06
108 109 5.897377 AGGAAAGCTTGCATAAAATACGT 57.103 34.783 6.80 0.00 0.00 3.57
109 110 6.995511 AGGAAAGCTTGCATAAAATACGTA 57.004 33.333 6.80 0.00 0.00 3.57
110 111 6.782150 AGGAAAGCTTGCATAAAATACGTAC 58.218 36.000 6.80 0.00 0.00 3.67
111 112 6.598064 AGGAAAGCTTGCATAAAATACGTACT 59.402 34.615 6.80 0.00 0.00 2.73
112 113 7.767198 AGGAAAGCTTGCATAAAATACGTACTA 59.233 33.333 6.80 0.00 0.00 1.82
113 114 8.557029 GGAAAGCTTGCATAAAATACGTACTAT 58.443 33.333 6.80 0.00 0.00 2.12
114 115 9.370126 GAAAGCTTGCATAAAATACGTACTATG 57.630 33.333 0.00 7.06 0.00 2.23
115 116 8.657074 AAGCTTGCATAAAATACGTACTATGA 57.343 30.769 18.48 7.02 0.00 2.15
116 117 8.657074 AGCTTGCATAAAATACGTACTATGAA 57.343 30.769 18.48 10.01 0.00 2.57
117 118 8.765219 AGCTTGCATAAAATACGTACTATGAAG 58.235 33.333 18.48 17.42 0.00 3.02
118 119 8.548721 GCTTGCATAAAATACGTACTATGAAGT 58.451 33.333 18.48 0.00 39.91 3.01
121 122 9.687210 TGCATAAAATACGTACTATGAAGTAGG 57.313 33.333 18.48 4.24 45.45 3.18
132 133 9.613957 CGTACTATGAAGTAGGTGAAATATGAG 57.386 37.037 0.00 0.00 38.89 2.90
156 157 9.890352 GAGAATATAACCTAACGATACGAAGTT 57.110 33.333 0.00 0.00 37.78 2.66
163 164 8.847444 AACCTAACGATACGAAGTTAGTATTG 57.153 34.615 17.32 17.32 44.87 1.90
164 165 7.989826 ACCTAACGATACGAAGTTAGTATTGT 58.010 34.615 18.35 18.35 45.89 2.71
165 166 7.912250 ACCTAACGATACGAAGTTAGTATTGTG 59.088 37.037 22.46 15.40 44.21 3.33
166 167 7.377928 CCTAACGATACGAAGTTAGTATTGTGG 59.622 40.741 22.46 17.80 44.21 4.17
167 168 6.441093 ACGATACGAAGTTAGTATTGTGGA 57.559 37.500 21.58 0.00 43.67 4.02
168 169 7.035840 ACGATACGAAGTTAGTATTGTGGAT 57.964 36.000 21.58 4.16 43.67 3.41
169 170 8.158169 ACGATACGAAGTTAGTATTGTGGATA 57.842 34.615 21.58 0.00 43.67 2.59
170 171 8.790718 ACGATACGAAGTTAGTATTGTGGATAT 58.209 33.333 21.58 3.32 43.67 1.63
171 172 9.622004 CGATACGAAGTTAGTATTGTGGATATT 57.378 33.333 9.64 0.00 37.78 1.28
204 205 7.610580 AACCATAGGGAAATTTGACTTTTCA 57.389 32.000 0.00 0.00 35.29 2.69
205 206 7.610580 ACCATAGGGAAATTTGACTTTTCAA 57.389 32.000 0.00 0.00 37.69 2.69
206 207 7.670364 ACCATAGGGAAATTTGACTTTTCAAG 58.330 34.615 0.00 0.00 39.33 3.02
207 208 7.508977 ACCATAGGGAAATTTGACTTTTCAAGA 59.491 33.333 0.00 0.00 39.33 3.02
208 209 8.031277 CCATAGGGAAATTTGACTTTTCAAGAG 58.969 37.037 0.00 0.00 38.66 2.85
209 210 8.579863 CATAGGGAAATTTGACTTTTCAAGAGT 58.420 33.333 0.00 0.00 42.79 3.24
210 211 7.423844 AGGGAAATTTGACTTTTCAAGAGTT 57.576 32.000 0.00 0.00 42.79 3.01
211 212 8.533569 AGGGAAATTTGACTTTTCAAGAGTTA 57.466 30.769 0.00 0.00 42.79 2.24
212 213 8.977412 AGGGAAATTTGACTTTTCAAGAGTTAA 58.023 29.630 0.00 0.00 42.79 2.01
213 214 9.764363 GGGAAATTTGACTTTTCAAGAGTTAAT 57.236 29.630 0.00 0.00 42.79 1.40
217 218 8.950403 ATTTGACTTTTCAAGAGTTAATACGC 57.050 30.769 0.00 0.00 42.79 4.42
218 219 6.476243 TGACTTTTCAAGAGTTAATACGCC 57.524 37.500 0.00 0.00 0.00 5.68
219 220 6.228258 TGACTTTTCAAGAGTTAATACGCCT 58.772 36.000 0.00 0.00 0.00 5.52
220 221 6.708949 TGACTTTTCAAGAGTTAATACGCCTT 59.291 34.615 0.00 0.00 0.00 4.35
221 222 7.227910 TGACTTTTCAAGAGTTAATACGCCTTT 59.772 33.333 0.00 0.00 0.00 3.11
222 223 8.611654 ACTTTTCAAGAGTTAATACGCCTTTA 57.388 30.769 0.00 0.00 0.00 1.85
223 224 9.227777 ACTTTTCAAGAGTTAATACGCCTTTAT 57.772 29.630 0.00 0.00 0.00 1.40
239 240 8.419076 ACGCCTTTATATTTTTAAATGCAAGG 57.581 30.769 0.00 12.80 34.38 3.61
240 241 8.254508 ACGCCTTTATATTTTTAAATGCAAGGA 58.745 29.630 17.44 0.00 34.91 3.36
241 242 8.755018 CGCCTTTATATTTTTAAATGCAAGGAG 58.245 33.333 17.44 13.36 34.91 3.69
242 243 9.599866 GCCTTTATATTTTTAAATGCAAGGAGT 57.400 29.630 17.44 0.00 34.91 3.85
278 279 9.968870 ACTATACTAAAGTCATACTAAAGCTGC 57.031 33.333 0.00 0.00 0.00 5.25
279 280 7.932120 ATACTAAAGTCATACTAAAGCTGCG 57.068 36.000 0.00 0.00 0.00 5.18
280 281 5.721232 ACTAAAGTCATACTAAAGCTGCGT 58.279 37.500 0.00 0.00 0.00 5.24
281 282 5.805994 ACTAAAGTCATACTAAAGCTGCGTC 59.194 40.000 0.00 0.00 0.00 5.19
282 283 3.868757 AGTCATACTAAAGCTGCGTCA 57.131 42.857 0.00 0.00 0.00 4.35
283 284 4.188247 AGTCATACTAAAGCTGCGTCAA 57.812 40.909 0.00 0.00 0.00 3.18
284 285 4.759782 AGTCATACTAAAGCTGCGTCAAT 58.240 39.130 0.00 0.00 0.00 2.57
285 286 5.178797 AGTCATACTAAAGCTGCGTCAATT 58.821 37.500 0.00 0.00 0.00 2.32
286 287 6.338146 AGTCATACTAAAGCTGCGTCAATTA 58.662 36.000 0.00 0.00 0.00 1.40
287 288 6.816640 AGTCATACTAAAGCTGCGTCAATTAA 59.183 34.615 0.00 0.00 0.00 1.40
288 289 7.495934 AGTCATACTAAAGCTGCGTCAATTAAT 59.504 33.333 0.00 0.00 0.00 1.40
289 290 8.122952 GTCATACTAAAGCTGCGTCAATTAATT 58.877 33.333 0.00 0.00 0.00 1.40
290 291 8.673711 TCATACTAAAGCTGCGTCAATTAATTT 58.326 29.630 0.00 0.00 0.00 1.82
291 292 8.736742 CATACTAAAGCTGCGTCAATTAATTTG 58.263 33.333 0.00 0.00 36.61 2.32
292 293 6.092748 ACTAAAGCTGCGTCAATTAATTTGG 58.907 36.000 0.00 0.00 35.92 3.28
293 294 4.782019 AAGCTGCGTCAATTAATTTGGA 57.218 36.364 0.00 0.00 35.92 3.53
294 295 4.989279 AGCTGCGTCAATTAATTTGGAT 57.011 36.364 0.00 0.00 35.92 3.41
295 296 4.925068 AGCTGCGTCAATTAATTTGGATC 58.075 39.130 0.00 0.00 35.92 3.36
296 297 3.725740 GCTGCGTCAATTAATTTGGATCG 59.274 43.478 0.00 2.97 35.92 3.69
297 298 4.282068 CTGCGTCAATTAATTTGGATCGG 58.718 43.478 0.00 0.00 35.92 4.18
298 299 3.066064 TGCGTCAATTAATTTGGATCGGG 59.934 43.478 0.00 0.00 35.92 5.14
299 300 3.550030 GCGTCAATTAATTTGGATCGGGG 60.550 47.826 0.00 0.00 35.92 5.73
300 301 3.004315 CGTCAATTAATTTGGATCGGGGG 59.996 47.826 0.00 0.00 35.92 5.40
345 346 6.942532 AAGTTGCACTCTTCATTAAACTGA 57.057 33.333 0.00 0.00 0.00 3.41
346 347 6.942532 AGTTGCACTCTTCATTAAACTGAA 57.057 33.333 0.00 0.00 34.14 3.02
347 348 7.333528 AGTTGCACTCTTCATTAAACTGAAA 57.666 32.000 0.00 0.00 34.86 2.69
348 349 7.771183 AGTTGCACTCTTCATTAAACTGAAAA 58.229 30.769 0.00 0.00 34.86 2.29
349 350 8.416329 AGTTGCACTCTTCATTAAACTGAAAAT 58.584 29.630 0.00 0.00 34.86 1.82
350 351 9.034544 GTTGCACTCTTCATTAAACTGAAAATT 57.965 29.630 0.00 0.00 34.86 1.82
351 352 8.578308 TGCACTCTTCATTAAACTGAAAATTG 57.422 30.769 0.00 0.00 34.86 2.32
352 353 7.169645 TGCACTCTTCATTAAACTGAAAATTGC 59.830 33.333 2.24 2.24 34.86 3.56
353 354 7.169645 GCACTCTTCATTAAACTGAAAATTGCA 59.830 33.333 3.77 0.00 35.31 4.08
354 355 9.199982 CACTCTTCATTAAACTGAAAATTGCAT 57.800 29.630 0.00 0.00 34.86 3.96
355 356 9.768662 ACTCTTCATTAAACTGAAAATTGCATT 57.231 25.926 0.00 0.00 34.86 3.56
362 363 9.667989 ATTAAACTGAAAATTGCATTTTTCTGC 57.332 25.926 31.82 18.07 43.06 4.26
371 372 4.587584 TGCATTTTTCTGCACAGATTGA 57.412 36.364 0.31 0.00 46.76 2.57
372 373 4.552355 TGCATTTTTCTGCACAGATTGAG 58.448 39.130 0.31 0.00 46.76 3.02
373 374 4.278919 TGCATTTTTCTGCACAGATTGAGA 59.721 37.500 0.31 0.00 46.76 3.27
374 375 5.221283 TGCATTTTTCTGCACAGATTGAGAA 60.221 36.000 0.31 0.00 46.76 2.87
375 376 5.345202 GCATTTTTCTGCACAGATTGAGAAG 59.655 40.000 0.31 0.00 41.87 2.85
376 377 6.444633 CATTTTTCTGCACAGATTGAGAAGT 58.555 36.000 0.31 0.00 37.29 3.01
377 378 7.587629 CATTTTTCTGCACAGATTGAGAAGTA 58.412 34.615 0.31 0.00 37.29 2.24
378 379 7.566760 TTTTTCTGCACAGATTGAGAAGTAA 57.433 32.000 0.31 0.00 37.29 2.24
379 380 6.791887 TTTCTGCACAGATTGAGAAGTAAG 57.208 37.500 0.31 0.00 37.29 2.34
380 381 5.728637 TCTGCACAGATTGAGAAGTAAGA 57.271 39.130 0.00 0.00 31.41 2.10
381 382 6.101650 TCTGCACAGATTGAGAAGTAAGAA 57.898 37.500 0.00 0.00 31.41 2.52
382 383 6.524734 TCTGCACAGATTGAGAAGTAAGAAA 58.475 36.000 0.00 0.00 31.41 2.52
383 384 6.992123 TCTGCACAGATTGAGAAGTAAGAAAA 59.008 34.615 0.00 0.00 31.41 2.29
384 385 6.959361 TGCACAGATTGAGAAGTAAGAAAAC 58.041 36.000 0.00 0.00 0.00 2.43
385 386 6.542005 TGCACAGATTGAGAAGTAAGAAAACA 59.458 34.615 0.00 0.00 0.00 2.83
386 387 7.229306 TGCACAGATTGAGAAGTAAGAAAACAT 59.771 33.333 0.00 0.00 0.00 2.71
387 388 8.078596 GCACAGATTGAGAAGTAAGAAAACATT 58.921 33.333 0.00 0.00 0.00 2.71
388 389 9.956720 CACAGATTGAGAAGTAAGAAAACATTT 57.043 29.630 0.00 0.00 0.00 2.32
389 390 9.956720 ACAGATTGAGAAGTAAGAAAACATTTG 57.043 29.630 0.00 0.00 0.00 2.32
390 391 9.956720 CAGATTGAGAAGTAAGAAAACATTTGT 57.043 29.630 0.00 0.00 0.00 2.83
392 393 9.107367 GATTGAGAAGTAAGAAAACATTTGTCG 57.893 33.333 0.00 0.00 0.00 4.35
393 394 7.780008 TGAGAAGTAAGAAAACATTTGTCGA 57.220 32.000 0.00 0.00 0.00 4.20
394 395 7.627340 TGAGAAGTAAGAAAACATTTGTCGAC 58.373 34.615 9.11 9.11 0.00 4.20
395 396 7.494625 TGAGAAGTAAGAAAACATTTGTCGACT 59.505 33.333 17.92 0.00 0.00 4.18
396 397 8.209917 AGAAGTAAGAAAACATTTGTCGACTT 57.790 30.769 17.92 0.00 0.00 3.01
397 398 9.321562 AGAAGTAAGAAAACATTTGTCGACTTA 57.678 29.630 17.92 4.83 0.00 2.24
398 399 9.582223 GAAGTAAGAAAACATTTGTCGACTTAG 57.418 33.333 17.92 6.71 0.00 2.18
399 400 8.882415 AGTAAGAAAACATTTGTCGACTTAGA 57.118 30.769 17.92 0.12 0.00 2.10
400 401 8.762426 AGTAAGAAAACATTTGTCGACTTAGAC 58.238 33.333 17.92 0.47 41.30 2.59
412 413 7.334844 TGTCGACTTAGACATAGATGAATGT 57.665 36.000 17.92 0.00 45.18 2.71
413 414 7.196331 TGTCGACTTAGACATAGATGAATGTG 58.804 38.462 17.92 0.00 45.18 3.21
414 415 6.143118 GTCGACTTAGACATAGATGAATGTGC 59.857 42.308 8.70 0.00 40.17 4.57
415 416 5.116225 CGACTTAGACATAGATGAATGTGCG 59.884 44.000 0.00 0.00 40.17 5.34
416 417 5.907207 ACTTAGACATAGATGAATGTGCGT 58.093 37.500 0.00 0.00 40.17 5.24
417 418 5.750547 ACTTAGACATAGATGAATGTGCGTG 59.249 40.000 0.00 0.00 40.17 5.34
418 419 4.128925 AGACATAGATGAATGTGCGTGT 57.871 40.909 0.00 0.00 40.17 4.49
419 420 5.262588 AGACATAGATGAATGTGCGTGTA 57.737 39.130 0.00 0.00 40.17 2.90
420 421 5.847304 AGACATAGATGAATGTGCGTGTAT 58.153 37.500 0.00 0.00 40.17 2.29
421 422 6.283694 AGACATAGATGAATGTGCGTGTATT 58.716 36.000 0.00 0.00 40.17 1.89
422 423 6.201615 AGACATAGATGAATGTGCGTGTATTG 59.798 38.462 0.00 0.00 40.17 1.90
423 424 5.817296 ACATAGATGAATGTGCGTGTATTGT 59.183 36.000 0.00 0.00 38.65 2.71
424 425 6.983890 ACATAGATGAATGTGCGTGTATTGTA 59.016 34.615 0.00 0.00 38.65 2.41
425 426 5.718649 AGATGAATGTGCGTGTATTGTAC 57.281 39.130 0.00 0.00 0.00 2.90
426 427 3.982127 TGAATGTGCGTGTATTGTACG 57.018 42.857 0.00 0.00 43.93 3.67
427 428 3.318886 TGAATGTGCGTGTATTGTACGT 58.681 40.909 0.00 0.00 43.09 3.57
428 429 3.122111 TGAATGTGCGTGTATTGTACGTG 59.878 43.478 0.00 0.00 43.09 4.49
429 430 2.137129 TGTGCGTGTATTGTACGTGT 57.863 45.000 0.00 0.00 43.09 4.49
430 431 2.471818 TGTGCGTGTATTGTACGTGTT 58.528 42.857 0.00 0.00 43.09 3.32
431 432 2.864946 TGTGCGTGTATTGTACGTGTTT 59.135 40.909 0.00 0.00 43.09 2.83
432 433 4.047142 TGTGCGTGTATTGTACGTGTTTA 58.953 39.130 0.00 0.00 43.09 2.01
433 434 4.685165 TGTGCGTGTATTGTACGTGTTTAT 59.315 37.500 0.00 0.00 43.09 1.40
434 435 5.164070 TGTGCGTGTATTGTACGTGTTTATC 60.164 40.000 0.00 0.00 43.09 1.75
435 436 4.030418 TGCGTGTATTGTACGTGTTTATCG 59.970 41.667 0.00 0.00 43.09 2.92
436 437 4.262743 GCGTGTATTGTACGTGTTTATCGA 59.737 41.667 0.00 0.00 43.09 3.59
437 438 5.697565 CGTGTATTGTACGTGTTTATCGAC 58.302 41.667 0.00 0.00 36.83 4.20
438 439 5.509272 CGTGTATTGTACGTGTTTATCGACT 59.491 40.000 0.00 0.00 36.83 4.18
439 440 6.682441 CGTGTATTGTACGTGTTTATCGACTA 59.318 38.462 0.00 0.00 36.83 2.59
440 441 7.374228 CGTGTATTGTACGTGTTTATCGACTAT 59.626 37.037 0.00 0.00 36.83 2.12
441 442 8.676761 GTGTATTGTACGTGTTTATCGACTATC 58.323 37.037 0.00 0.00 0.00 2.08
442 443 8.397148 TGTATTGTACGTGTTTATCGACTATCA 58.603 33.333 0.00 0.00 0.00 2.15
443 444 9.390795 GTATTGTACGTGTTTATCGACTATCAT 57.609 33.333 0.00 0.00 0.00 2.45
444 445 7.673810 TTGTACGTGTTTATCGACTATCATG 57.326 36.000 0.00 0.00 0.00 3.07
445 446 6.203647 TGTACGTGTTTATCGACTATCATGG 58.796 40.000 0.00 0.00 0.00 3.66
446 447 5.258456 ACGTGTTTATCGACTATCATGGT 57.742 39.130 0.00 0.00 0.00 3.55
447 448 6.381481 ACGTGTTTATCGACTATCATGGTA 57.619 37.500 0.00 0.00 0.00 3.25
448 449 6.978338 ACGTGTTTATCGACTATCATGGTAT 58.022 36.000 0.00 0.00 0.00 2.73
449 450 8.102800 ACGTGTTTATCGACTATCATGGTATA 57.897 34.615 0.00 0.00 0.00 1.47
450 451 8.570488 ACGTGTTTATCGACTATCATGGTATAA 58.430 33.333 0.00 0.00 0.00 0.98
451 452 9.062674 CGTGTTTATCGACTATCATGGTATAAG 57.937 37.037 0.00 0.00 0.00 1.73
452 453 8.861101 GTGTTTATCGACTATCATGGTATAAGC 58.139 37.037 0.00 0.00 0.00 3.09
453 454 8.803235 TGTTTATCGACTATCATGGTATAAGCT 58.197 33.333 0.00 0.00 0.00 3.74
457 458 7.997773 TCGACTATCATGGTATAAGCTAACT 57.002 36.000 0.00 0.00 0.00 2.24
458 459 8.405418 TCGACTATCATGGTATAAGCTAACTT 57.595 34.615 0.00 0.00 40.07 2.66
459 460 9.511272 TCGACTATCATGGTATAAGCTAACTTA 57.489 33.333 0.00 0.00 42.47 2.24
472 473 5.099042 AGCTAACTTATATTATGGGGCCG 57.901 43.478 0.00 0.00 0.00 6.13
473 474 4.781087 AGCTAACTTATATTATGGGGCCGA 59.219 41.667 0.00 0.00 0.00 5.54
474 475 5.104900 AGCTAACTTATATTATGGGGCCGAG 60.105 44.000 0.00 0.00 0.00 4.63
493 494 5.047235 GCCGAGGGAGTACATAACTATCATT 60.047 44.000 0.00 0.00 39.07 2.57
567 570 5.519683 CGTGTTTGTAAATTCACGTGTTC 57.480 39.130 16.51 0.00 43.79 3.18
568 571 4.435231 CGTGTTTGTAAATTCACGTGTTCC 59.565 41.667 16.51 0.00 43.79 3.62
569 572 5.333513 GTGTTTGTAAATTCACGTGTTCCA 58.666 37.500 16.51 0.00 0.00 3.53
570 573 5.800941 GTGTTTGTAAATTCACGTGTTCCAA 59.199 36.000 16.51 3.41 0.00 3.53
571 574 6.020995 GTGTTTGTAAATTCACGTGTTCCAAG 60.021 38.462 16.51 0.00 0.00 3.61
572 575 6.127980 TGTTTGTAAATTCACGTGTTCCAAGA 60.128 34.615 16.51 0.00 0.00 3.02
573 576 6.438259 TTGTAAATTCACGTGTTCCAAGAA 57.562 33.333 16.51 0.20 0.00 2.52
574 577 6.438259 TGTAAATTCACGTGTTCCAAGAAA 57.562 33.333 16.51 0.00 0.00 2.52
575 578 6.853720 TGTAAATTCACGTGTTCCAAGAAAA 58.146 32.000 16.51 0.00 0.00 2.29
576 579 7.484975 TGTAAATTCACGTGTTCCAAGAAAAT 58.515 30.769 16.51 1.35 0.00 1.82
592 668 9.314321 TCCAAGAAAATAGAAGATTAACTAGCG 57.686 33.333 0.00 0.00 0.00 4.26
616 692 5.126067 AGGGTAATTTCTCGGAATGATGTG 58.874 41.667 0.00 0.00 0.00 3.21
658 737 4.163427 TGGAATCCCATCAGTCTATCCTC 58.837 47.826 0.00 0.00 37.58 3.71
664 743 2.562298 CCATCAGTCTATCCTCTCTGGC 59.438 54.545 0.00 0.00 35.26 4.85
697 776 6.062095 TCAAAAGAGAGTAAAAAGGACCAGG 58.938 40.000 0.00 0.00 0.00 4.45
710 789 3.790126 AGGACCAGGCAAATAATTGGTT 58.210 40.909 0.00 0.00 43.65 3.67
714 793 6.777580 AGGACCAGGCAAATAATTGGTTATAG 59.222 38.462 0.00 0.00 43.65 1.31
721 800 8.757877 AGGCAAATAATTGGTTATAGAAAAGCA 58.242 29.630 0.00 0.00 37.02 3.91
785 864 1.412343 GCAAAAGGGACCTGCTTTTGA 59.588 47.619 27.10 0.00 45.52 2.69
794 873 3.084786 GACCTGCTTTTGAATAGCCACT 58.915 45.455 5.21 0.00 37.85 4.00
797 876 3.507233 CCTGCTTTTGAATAGCCACTCAA 59.493 43.478 5.21 0.00 37.85 3.02
801 880 4.466828 CTTTTGAATAGCCACTCAACACG 58.533 43.478 0.00 0.00 31.41 4.49
870 956 1.383803 CCCCTCCCTCAGCTAGCTT 60.384 63.158 16.46 0.00 0.00 3.74
911 997 2.124403 CCTCATCACCCAGCTGCC 60.124 66.667 8.66 0.00 0.00 4.85
912 998 2.124403 CTCATCACCCAGCTGCCC 60.124 66.667 8.66 0.00 0.00 5.36
913 999 2.611800 TCATCACCCAGCTGCCCT 60.612 61.111 8.66 0.00 0.00 5.19
914 1000 2.124403 CATCACCCAGCTGCCCTC 60.124 66.667 8.66 0.00 0.00 4.30
915 1001 2.611800 ATCACCCAGCTGCCCTCA 60.612 61.111 8.66 0.00 0.00 3.86
916 1002 2.677289 ATCACCCAGCTGCCCTCAG 61.677 63.158 8.66 0.00 43.16 3.35
917 1003 4.421515 CACCCAGCTGCCCTCAGG 62.422 72.222 8.66 5.46 40.65 3.86
938 1031 1.484240 CCTCGGCATTCTTTCCTCTCT 59.516 52.381 0.00 0.00 0.00 3.10
940 1033 1.482593 TCGGCATTCTTTCCTCTCTCC 59.517 52.381 0.00 0.00 0.00 3.71
960 1053 1.295792 CACACTACACACACCACCAC 58.704 55.000 0.00 0.00 0.00 4.16
969 1062 1.271543 ACACACCACCACCATCATCAG 60.272 52.381 0.00 0.00 0.00 2.90
972 1066 0.034767 ACCACCACCATCATCAGCAG 60.035 55.000 0.00 0.00 0.00 4.24
1215 1316 3.394836 GCCCGCCTCAAGTCCTCT 61.395 66.667 0.00 0.00 0.00 3.69
1373 1497 3.133691 AGAAGTGTATGTGTGTGTGCTG 58.866 45.455 0.00 0.00 0.00 4.41
1377 1501 3.002791 GTGTATGTGTGTGTGCTGCTAT 58.997 45.455 0.00 0.00 0.00 2.97
1458 1587 7.387122 TGTGTACTGTTTAATTACATGCCGTAA 59.613 33.333 0.00 0.00 44.12 3.18
1494 1623 0.464193 TGCTGCTGTGTGTGTGATGT 60.464 50.000 0.00 0.00 0.00 3.06
1576 1727 6.293680 GGTTGCCTTTTTGAGAGACTAAGAAG 60.294 42.308 0.00 0.00 0.00 2.85
1577 1728 5.930135 TGCCTTTTTGAGAGACTAAGAAGT 58.070 37.500 0.00 0.00 39.21 3.01
1578 1729 7.062749 TGCCTTTTTGAGAGACTAAGAAGTA 57.937 36.000 0.00 0.00 35.56 2.24
1579 1730 7.506114 TGCCTTTTTGAGAGACTAAGAAGTAA 58.494 34.615 0.00 0.00 35.56 2.24
1580 1731 7.657761 TGCCTTTTTGAGAGACTAAGAAGTAAG 59.342 37.037 0.00 0.00 35.56 2.34
1581 1732 7.873505 GCCTTTTTGAGAGACTAAGAAGTAAGA 59.126 37.037 0.00 0.00 35.56 2.10
1582 1733 9.198837 CCTTTTTGAGAGACTAAGAAGTAAGAC 57.801 37.037 0.00 0.00 35.56 3.01
1583 1734 9.198837 CTTTTTGAGAGACTAAGAAGTAAGACC 57.801 37.037 0.00 0.00 35.56 3.85
1597 1748 2.249844 AAGACCGGTGGTTTGTACTG 57.750 50.000 14.63 0.00 35.25 2.74
1601 1752 2.802247 GACCGGTGGTTTGTACTGTTAC 59.198 50.000 14.63 0.00 35.25 2.50
1602 1753 2.170187 ACCGGTGGTTTGTACTGTTACA 59.830 45.455 6.12 0.00 36.36 2.41
1603 1754 3.181452 ACCGGTGGTTTGTACTGTTACAT 60.181 43.478 6.12 0.00 38.05 2.29
1627 1781 3.837213 TGCTTAAGTTGCAGATCAAGC 57.163 42.857 14.63 14.63 39.02 4.01
1636 1790 5.005740 AGTTGCAGATCAAGCTGTATCAAA 58.994 37.500 10.87 1.21 38.17 2.69
1643 1797 3.018856 TCAAGCTGTATCAAAGCCATGG 58.981 45.455 7.63 7.63 41.82 3.66
1647 1801 2.357009 GCTGTATCAAAGCCATGGTCTG 59.643 50.000 14.67 8.48 34.45 3.51
1677 1832 3.945285 TCTCCACACAAACTTTGTTCTCC 59.055 43.478 4.30 0.00 43.23 3.71
1682 1837 4.557301 CACACAAACTTTGTTCTCCGTTTC 59.443 41.667 4.30 0.00 43.23 2.78
1684 1839 4.793216 CACAAACTTTGTTCTCCGTTTCTG 59.207 41.667 4.30 0.00 43.23 3.02
1687 1842 5.638596 AACTTTGTTCTCCGTTTCTGTTT 57.361 34.783 0.00 0.00 0.00 2.83
1697 1852 4.777463 TCCGTTTCTGTTTCTCCTTTCTT 58.223 39.130 0.00 0.00 0.00 2.52
1704 1859 9.803315 GTTTCTGTTTCTCCTTTCTTGTTTATT 57.197 29.630 0.00 0.00 0.00 1.40
1705 1860 9.801873 TTTCTGTTTCTCCTTTCTTGTTTATTG 57.198 29.630 0.00 0.00 0.00 1.90
1707 1862 8.405531 TCTGTTTCTCCTTTCTTGTTTATTGTG 58.594 33.333 0.00 0.00 0.00 3.33
1738 1899 9.696572 TTCTACTACTATGTGTCATCCTAAGTT 57.303 33.333 0.00 0.00 0.00 2.66
1750 1911 5.065218 GTCATCCTAAGTTGCTGTATGGTTG 59.935 44.000 0.00 0.00 0.00 3.77
1753 1914 4.286032 TCCTAAGTTGCTGTATGGTTGACT 59.714 41.667 0.00 0.00 0.00 3.41
1757 1918 5.420725 AGTTGCTGTATGGTTGACTGATA 57.579 39.130 0.00 0.00 0.00 2.15
1763 1924 5.508153 GCTGTATGGTTGACTGATAGATCGT 60.508 44.000 0.00 0.00 0.00 3.73
1767 1928 5.250235 TGGTTGACTGATAGATCGTTCTC 57.750 43.478 0.00 0.00 33.17 2.87
1774 1935 8.051901 TGACTGATAGATCGTTCTCTGTTTTA 57.948 34.615 0.00 0.00 33.17 1.52
1783 1944 8.722394 AGATCGTTCTCTGTTTTAATTTTCCTC 58.278 33.333 0.00 0.00 0.00 3.71
1786 1947 8.289618 TCGTTCTCTGTTTTAATTTTCCTCATG 58.710 33.333 0.00 0.00 0.00 3.07
1787 1948 8.289618 CGTTCTCTGTTTTAATTTTCCTCATGA 58.710 33.333 0.00 0.00 0.00 3.07
1788 1949 9.399403 GTTCTCTGTTTTAATTTTCCTCATGAC 57.601 33.333 0.00 0.00 0.00 3.06
1798 1961 3.893753 TTCCTCATGACAAGGGGAAAA 57.106 42.857 9.60 0.00 33.77 2.29
1802 1965 5.509498 TCCTCATGACAAGGGGAAAATAAG 58.491 41.667 0.00 0.00 34.46 1.73
1803 1966 5.252863 TCCTCATGACAAGGGGAAAATAAGA 59.747 40.000 0.00 0.00 34.46 2.10
1804 1967 6.068853 TCCTCATGACAAGGGGAAAATAAGAT 60.069 38.462 0.00 0.00 34.46 2.40
1805 1968 6.264067 CCTCATGACAAGGGGAAAATAAGATC 59.736 42.308 0.00 0.00 0.00 2.75
1810 1973 6.069705 ACAAGGGGAAAATAAGATCGGTTA 57.930 37.500 0.00 0.00 0.00 2.85
1811 1974 6.486941 ACAAGGGGAAAATAAGATCGGTTAA 58.513 36.000 0.00 0.00 0.00 2.01
1813 1976 7.284716 ACAAGGGGAAAATAAGATCGGTTAATC 59.715 37.037 0.00 0.00 0.00 1.75
1814 1977 6.906848 AGGGGAAAATAAGATCGGTTAATCA 58.093 36.000 0.00 0.00 0.00 2.57
1815 1978 7.351166 AGGGGAAAATAAGATCGGTTAATCAA 58.649 34.615 0.00 0.00 0.00 2.57
1834 2030 4.575885 TCAAGTGGTTGTATCCTGCTTAC 58.424 43.478 0.00 0.00 34.98 2.34
1844 2040 6.588719 TGTATCCTGCTTACTTTGCAAATT 57.411 33.333 13.23 9.97 40.13 1.82
1914 2123 2.121948 CCCTGATCAGTTCTGGATGGA 58.878 52.381 21.11 0.00 44.21 3.41
1915 2124 2.709934 CCCTGATCAGTTCTGGATGGAT 59.290 50.000 21.11 0.00 44.21 3.41
1916 2125 3.496337 CCCTGATCAGTTCTGGATGGATG 60.496 52.174 21.11 1.25 44.21 3.51
1917 2126 3.496337 CCTGATCAGTTCTGGATGGATGG 60.496 52.174 21.11 0.00 44.21 3.51
1932 2141 4.257267 TGGATGGTTCTGCAGATATACG 57.743 45.455 19.04 0.00 0.00 3.06
2045 2263 7.171630 ACCACTAGTTAAAGACCACTCATAG 57.828 40.000 0.00 0.00 0.00 2.23
2047 2265 6.351033 CCACTAGTTAAAGACCACTCATAGCA 60.351 42.308 0.00 0.00 0.00 3.49
2054 2272 9.722056 GTTAAAGACCACTCATAGCATAATTTG 57.278 33.333 0.00 0.00 0.00 2.32
2088 2306 7.833285 ACCAAACCTGAAATATTACAACAGT 57.167 32.000 0.00 0.00 0.00 3.55
2108 2326 6.711277 ACAGTTATAGTGTGATCAACCATGT 58.289 36.000 0.00 0.00 29.04 3.21
2179 2397 7.885009 TCATCTGCAAATGGAGAATTATTGA 57.115 32.000 8.73 5.11 45.49 2.57
2186 2404 8.301720 TGCAAATGGAGAATTATTGATAGATGC 58.698 33.333 0.00 0.00 0.00 3.91
2188 2406 9.841880 CAAATGGAGAATTATTGATAGATGCAG 57.158 33.333 0.00 0.00 0.00 4.41
2242 2460 2.596346 TCGGGACAGTTGGTAGTTGTA 58.404 47.619 0.00 0.00 0.00 2.41
2243 2461 3.167485 TCGGGACAGTTGGTAGTTGTAT 58.833 45.455 0.00 0.00 0.00 2.29
2271 2489 4.757594 TGAACAGTTTCTGCTGCAATTTT 58.242 34.783 3.02 0.00 39.96 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.744468 GCTCTTAGAAAAACAAATTCACCTTTA 57.256 29.630 0.00 0.00 0.00 1.85
32 33 7.710907 GGCTCTTAGAAAAACAAATTCACCTTT 59.289 33.333 0.00 0.00 0.00 3.11
33 34 7.069950 AGGCTCTTAGAAAAACAAATTCACCTT 59.930 33.333 0.00 0.00 0.00 3.50
34 35 6.551227 AGGCTCTTAGAAAAACAAATTCACCT 59.449 34.615 0.00 0.00 0.00 4.00
35 36 6.749139 AGGCTCTTAGAAAAACAAATTCACC 58.251 36.000 0.00 0.00 0.00 4.02
36 37 9.914131 ATTAGGCTCTTAGAAAAACAAATTCAC 57.086 29.630 0.00 0.00 0.00 3.18
37 38 9.912634 CATTAGGCTCTTAGAAAAACAAATTCA 57.087 29.630 0.00 0.00 0.00 2.57
51 52 9.120538 GGTCAAACATAAATCATTAGGCTCTTA 57.879 33.333 0.00 0.00 0.00 2.10
52 53 7.615365 TGGTCAAACATAAATCATTAGGCTCTT 59.385 33.333 0.00 0.00 0.00 2.85
53 54 7.118723 TGGTCAAACATAAATCATTAGGCTCT 58.881 34.615 0.00 0.00 0.00 4.09
54 55 7.333528 TGGTCAAACATAAATCATTAGGCTC 57.666 36.000 0.00 0.00 0.00 4.70
55 56 7.631377 GCTTGGTCAAACATAAATCATTAGGCT 60.631 37.037 0.00 0.00 0.00 4.58
56 57 6.476706 GCTTGGTCAAACATAAATCATTAGGC 59.523 38.462 0.00 0.00 0.00 3.93
57 58 7.775120 AGCTTGGTCAAACATAAATCATTAGG 58.225 34.615 0.00 0.00 0.00 2.69
60 61 9.995003 TTTAAGCTTGGTCAAACATAAATCATT 57.005 25.926 9.86 0.00 0.00 2.57
61 62 9.643693 CTTTAAGCTTGGTCAAACATAAATCAT 57.356 29.630 9.86 0.00 0.00 2.45
62 63 8.087750 CCTTTAAGCTTGGTCAAACATAAATCA 58.912 33.333 9.86 0.00 0.00 2.57
63 64 8.303876 TCCTTTAAGCTTGGTCAAACATAAATC 58.696 33.333 9.86 0.00 0.00 2.17
64 65 8.189119 TCCTTTAAGCTTGGTCAAACATAAAT 57.811 30.769 9.86 0.00 0.00 1.40
65 66 7.589958 TCCTTTAAGCTTGGTCAAACATAAA 57.410 32.000 9.86 0.00 0.00 1.40
66 67 7.589958 TTCCTTTAAGCTTGGTCAAACATAA 57.410 32.000 9.86 0.00 0.00 1.90
67 68 7.589958 TTTCCTTTAAGCTTGGTCAAACATA 57.410 32.000 9.86 0.00 0.00 2.29
68 69 6.478512 TTTCCTTTAAGCTTGGTCAAACAT 57.521 33.333 9.86 0.00 0.00 2.71
69 70 5.681179 GCTTTCCTTTAAGCTTGGTCAAACA 60.681 40.000 9.86 0.00 45.50 2.83
70 71 4.745125 GCTTTCCTTTAAGCTTGGTCAAAC 59.255 41.667 9.86 0.00 45.50 2.93
71 72 4.944048 GCTTTCCTTTAAGCTTGGTCAAA 58.056 39.130 9.86 0.20 45.50 2.69
72 73 4.584327 GCTTTCCTTTAAGCTTGGTCAA 57.416 40.909 9.86 0.00 45.50 3.18
81 82 8.798153 CGTATTTTATGCAAGCTTTCCTTTAAG 58.202 33.333 0.00 0.00 0.00 1.85
82 83 8.301002 ACGTATTTTATGCAAGCTTTCCTTTAA 58.699 29.630 0.00 0.00 0.00 1.52
83 84 7.822658 ACGTATTTTATGCAAGCTTTCCTTTA 58.177 30.769 0.00 0.00 0.00 1.85
84 85 6.687604 ACGTATTTTATGCAAGCTTTCCTTT 58.312 32.000 0.00 0.00 0.00 3.11
85 86 6.267496 ACGTATTTTATGCAAGCTTTCCTT 57.733 33.333 0.00 0.00 0.00 3.36
86 87 5.897377 ACGTATTTTATGCAAGCTTTCCT 57.103 34.783 0.00 0.00 0.00 3.36
87 88 6.782150 AGTACGTATTTTATGCAAGCTTTCC 58.218 36.000 0.00 0.00 0.00 3.13
88 89 9.370126 CATAGTACGTATTTTATGCAAGCTTTC 57.630 33.333 0.00 0.00 0.00 2.62
89 90 9.104965 TCATAGTACGTATTTTATGCAAGCTTT 57.895 29.630 0.00 0.00 0.00 3.51
90 91 8.657074 TCATAGTACGTATTTTATGCAAGCTT 57.343 30.769 14.73 0.00 0.00 3.74
91 92 8.657074 TTCATAGTACGTATTTTATGCAAGCT 57.343 30.769 14.73 0.00 0.00 3.74
92 93 8.548721 ACTTCATAGTACGTATTTTATGCAAGC 58.451 33.333 19.52 0.00 31.21 4.01
95 96 9.687210 CCTACTTCATAGTACGTATTTTATGCA 57.313 33.333 14.73 0.00 35.78 3.96
96 97 9.688592 ACCTACTTCATAGTACGTATTTTATGC 57.311 33.333 14.73 0.00 35.78 3.14
105 106 9.128404 TCATATTTCACCTACTTCATAGTACGT 57.872 33.333 0.00 0.00 35.78 3.57
106 107 9.613957 CTCATATTTCACCTACTTCATAGTACG 57.386 37.037 0.00 0.00 35.78 3.67
129 130 9.060347 ACTTCGTATCGTTAGGTTATATTCTCA 57.940 33.333 0.00 0.00 0.00 3.27
130 131 9.890352 AACTTCGTATCGTTAGGTTATATTCTC 57.110 33.333 0.00 0.00 0.00 2.87
137 138 9.935682 CAATACTAACTTCGTATCGTTAGGTTA 57.064 33.333 12.20 0.00 44.18 2.85
138 139 8.462016 ACAATACTAACTTCGTATCGTTAGGTT 58.538 33.333 12.20 5.62 44.18 3.50
139 140 7.912250 CACAATACTAACTTCGTATCGTTAGGT 59.088 37.037 12.20 0.60 44.18 3.08
140 141 7.377928 CCACAATACTAACTTCGTATCGTTAGG 59.622 40.741 12.20 0.00 44.18 2.69
141 142 8.124823 TCCACAATACTAACTTCGTATCGTTAG 58.875 37.037 7.43 7.43 44.96 2.34
142 143 7.984391 TCCACAATACTAACTTCGTATCGTTA 58.016 34.615 0.00 0.00 0.00 3.18
143 144 6.855836 TCCACAATACTAACTTCGTATCGTT 58.144 36.000 0.00 0.00 0.00 3.85
144 145 6.441093 TCCACAATACTAACTTCGTATCGT 57.559 37.500 0.00 0.00 0.00 3.73
145 146 9.622004 AATATCCACAATACTAACTTCGTATCG 57.378 33.333 0.00 0.00 0.00 2.92
178 179 9.148879 TGAAAAGTCAAATTTCCCTATGGTTTA 57.851 29.630 0.00 0.00 36.23 2.01
179 180 8.028652 TGAAAAGTCAAATTTCCCTATGGTTT 57.971 30.769 0.00 0.00 36.23 3.27
180 181 7.610580 TGAAAAGTCAAATTTCCCTATGGTT 57.389 32.000 0.00 0.00 36.23 3.67
181 182 7.508977 TCTTGAAAAGTCAAATTTCCCTATGGT 59.491 33.333 0.00 0.00 46.34 3.55
182 183 7.895759 TCTTGAAAAGTCAAATTTCCCTATGG 58.104 34.615 0.00 0.00 46.34 2.74
183 184 8.579863 ACTCTTGAAAAGTCAAATTTCCCTATG 58.420 33.333 0.00 0.00 46.34 2.23
184 185 8.712228 ACTCTTGAAAAGTCAAATTTCCCTAT 57.288 30.769 0.00 0.00 46.34 2.57
185 186 8.533569 AACTCTTGAAAAGTCAAATTTCCCTA 57.466 30.769 0.00 0.00 46.34 3.53
186 187 7.423844 AACTCTTGAAAAGTCAAATTTCCCT 57.576 32.000 0.00 0.00 46.34 4.20
187 188 9.764363 ATTAACTCTTGAAAAGTCAAATTTCCC 57.236 29.630 0.00 0.00 46.34 3.97
191 192 9.394477 GCGTATTAACTCTTGAAAAGTCAAATT 57.606 29.630 0.00 0.00 46.34 1.82
192 193 8.021396 GGCGTATTAACTCTTGAAAAGTCAAAT 58.979 33.333 0.00 0.00 46.34 2.32
193 194 7.227910 AGGCGTATTAACTCTTGAAAAGTCAAA 59.772 33.333 0.00 0.00 46.34 2.69
194 195 6.708949 AGGCGTATTAACTCTTGAAAAGTCAA 59.291 34.615 0.00 0.00 46.34 3.18
195 196 6.228258 AGGCGTATTAACTCTTGAAAAGTCA 58.772 36.000 0.00 0.00 46.34 3.41
196 197 6.723131 AGGCGTATTAACTCTTGAAAAGTC 57.277 37.500 0.00 0.00 46.34 3.01
197 198 7.506328 AAAGGCGTATTAACTCTTGAAAAGT 57.494 32.000 0.00 0.00 46.34 2.66
216 217 9.599866 ACTCCTTGCATTTAAAAATATAAAGGC 57.400 29.630 8.89 8.89 46.90 4.35
252 253 9.968870 GCAGCTTTAGTATGACTTTAGTATAGT 57.031 33.333 0.00 0.00 0.00 2.12
253 254 9.119329 CGCAGCTTTAGTATGACTTTAGTATAG 57.881 37.037 0.00 0.00 0.00 1.31
254 255 8.627403 ACGCAGCTTTAGTATGACTTTAGTATA 58.373 33.333 0.00 0.00 0.00 1.47
255 256 7.490000 ACGCAGCTTTAGTATGACTTTAGTAT 58.510 34.615 0.00 0.00 0.00 2.12
256 257 6.860080 ACGCAGCTTTAGTATGACTTTAGTA 58.140 36.000 0.00 0.00 0.00 1.82
257 258 5.721232 ACGCAGCTTTAGTATGACTTTAGT 58.279 37.500 0.00 0.00 0.00 2.24
258 259 5.805486 TGACGCAGCTTTAGTATGACTTTAG 59.195 40.000 0.00 0.00 0.00 1.85
259 260 5.716094 TGACGCAGCTTTAGTATGACTTTA 58.284 37.500 0.00 0.00 0.00 1.85
260 261 4.566004 TGACGCAGCTTTAGTATGACTTT 58.434 39.130 0.00 0.00 0.00 2.66
261 262 4.188247 TGACGCAGCTTTAGTATGACTT 57.812 40.909 0.00 0.00 0.00 3.01
262 263 3.868757 TGACGCAGCTTTAGTATGACT 57.131 42.857 0.00 0.00 0.00 3.41
263 264 5.470845 AATTGACGCAGCTTTAGTATGAC 57.529 39.130 0.00 0.00 0.00 3.06
264 265 7.786178 ATTAATTGACGCAGCTTTAGTATGA 57.214 32.000 0.00 0.00 0.00 2.15
265 266 8.736742 CAAATTAATTGACGCAGCTTTAGTATG 58.263 33.333 0.39 0.00 41.85 2.39
266 267 7.915397 CCAAATTAATTGACGCAGCTTTAGTAT 59.085 33.333 0.39 0.00 41.85 2.12
267 268 7.119992 TCCAAATTAATTGACGCAGCTTTAGTA 59.880 33.333 0.39 0.00 41.85 1.82
268 269 6.072175 TCCAAATTAATTGACGCAGCTTTAGT 60.072 34.615 0.39 0.00 41.85 2.24
269 270 6.321717 TCCAAATTAATTGACGCAGCTTTAG 58.678 36.000 0.39 0.00 41.85 1.85
270 271 6.260870 TCCAAATTAATTGACGCAGCTTTA 57.739 33.333 0.39 0.00 41.85 1.85
271 272 5.132897 TCCAAATTAATTGACGCAGCTTT 57.867 34.783 0.39 0.00 41.85 3.51
272 273 4.782019 TCCAAATTAATTGACGCAGCTT 57.218 36.364 0.39 0.00 41.85 3.74
273 274 4.496341 CGATCCAAATTAATTGACGCAGCT 60.496 41.667 0.39 0.00 41.85 4.24
274 275 3.725740 CGATCCAAATTAATTGACGCAGC 59.274 43.478 0.39 0.00 41.85 5.25
275 276 4.282068 CCGATCCAAATTAATTGACGCAG 58.718 43.478 0.39 0.00 41.85 5.18
276 277 3.066064 CCCGATCCAAATTAATTGACGCA 59.934 43.478 0.39 0.00 41.85 5.24
277 278 3.550030 CCCCGATCCAAATTAATTGACGC 60.550 47.826 0.39 0.00 41.85 5.19
278 279 3.004315 CCCCCGATCCAAATTAATTGACG 59.996 47.826 0.39 4.11 41.85 4.35
279 280 4.584327 CCCCCGATCCAAATTAATTGAC 57.416 45.455 0.39 0.00 41.85 3.18
320 321 9.066892 TTCAGTTTAATGAAGAGTGCAACTTAT 57.933 29.630 7.28 1.69 40.09 1.73
321 322 8.445275 TTCAGTTTAATGAAGAGTGCAACTTA 57.555 30.769 7.28 0.00 40.09 2.24
322 323 7.333528 TTCAGTTTAATGAAGAGTGCAACTT 57.666 32.000 7.05 7.05 40.09 2.66
323 324 6.942532 TTCAGTTTAATGAAGAGTGCAACT 57.057 33.333 0.00 0.00 41.76 3.16
324 325 7.985634 TTTTCAGTTTAATGAAGAGTGCAAC 57.014 32.000 0.00 0.00 40.16 4.17
325 326 9.033481 CAATTTTCAGTTTAATGAAGAGTGCAA 57.967 29.630 0.00 0.00 40.16 4.08
326 327 8.578308 CAATTTTCAGTTTAATGAAGAGTGCA 57.422 30.769 0.00 0.00 40.16 4.57
328 329 8.578308 TGCAATTTTCAGTTTAATGAAGAGTG 57.422 30.769 6.56 6.56 40.37 3.51
329 330 9.768662 AATGCAATTTTCAGTTTAATGAAGAGT 57.231 25.926 0.00 0.00 40.16 3.24
351 352 4.801891 TCTCAATCTGTGCAGAAAAATGC 58.198 39.130 5.95 0.00 46.68 3.56
352 353 6.444633 ACTTCTCAATCTGTGCAGAAAAATG 58.555 36.000 5.95 4.20 41.36 2.32
353 354 6.645790 ACTTCTCAATCTGTGCAGAAAAAT 57.354 33.333 5.95 0.00 41.36 1.82
354 355 7.498900 TCTTACTTCTCAATCTGTGCAGAAAAA 59.501 33.333 5.95 0.00 41.36 1.94
355 356 6.992123 TCTTACTTCTCAATCTGTGCAGAAAA 59.008 34.615 5.95 0.00 41.36 2.29
356 357 6.524734 TCTTACTTCTCAATCTGTGCAGAAA 58.475 36.000 5.95 0.00 41.36 2.52
357 358 6.101650 TCTTACTTCTCAATCTGTGCAGAA 57.898 37.500 5.95 0.00 41.36 3.02
358 359 5.728637 TCTTACTTCTCAATCTGTGCAGA 57.271 39.130 4.23 4.23 42.37 4.26
359 360 6.791887 TTTCTTACTTCTCAATCTGTGCAG 57.208 37.500 0.00 0.00 0.00 4.41
360 361 6.542005 TGTTTTCTTACTTCTCAATCTGTGCA 59.458 34.615 0.00 0.00 0.00 4.57
361 362 6.959361 TGTTTTCTTACTTCTCAATCTGTGC 58.041 36.000 0.00 0.00 0.00 4.57
362 363 9.956720 AAATGTTTTCTTACTTCTCAATCTGTG 57.043 29.630 0.00 0.00 0.00 3.66
363 364 9.956720 CAAATGTTTTCTTACTTCTCAATCTGT 57.043 29.630 0.00 0.00 0.00 3.41
364 365 9.956720 ACAAATGTTTTCTTACTTCTCAATCTG 57.043 29.630 0.00 0.00 0.00 2.90
366 367 9.107367 CGACAAATGTTTTCTTACTTCTCAATC 57.893 33.333 0.00 0.00 0.00 2.67
367 368 8.836413 TCGACAAATGTTTTCTTACTTCTCAAT 58.164 29.630 0.00 0.00 0.00 2.57
368 369 8.120465 GTCGACAAATGTTTTCTTACTTCTCAA 58.880 33.333 11.55 0.00 0.00 3.02
369 370 7.494625 AGTCGACAAATGTTTTCTTACTTCTCA 59.505 33.333 19.50 0.00 0.00 3.27
370 371 7.852516 AGTCGACAAATGTTTTCTTACTTCTC 58.147 34.615 19.50 0.00 0.00 2.87
371 372 7.787725 AGTCGACAAATGTTTTCTTACTTCT 57.212 32.000 19.50 0.00 0.00 2.85
372 373 9.582223 CTAAGTCGACAAATGTTTTCTTACTTC 57.418 33.333 19.50 0.00 0.00 3.01
373 374 9.321562 TCTAAGTCGACAAATGTTTTCTTACTT 57.678 29.630 19.50 0.00 0.00 2.24
374 375 8.762426 GTCTAAGTCGACAAATGTTTTCTTACT 58.238 33.333 19.50 0.00 34.11 2.24
375 376 8.545420 TGTCTAAGTCGACAAATGTTTTCTTAC 58.455 33.333 19.50 1.94 40.69 2.34
376 377 8.651391 TGTCTAAGTCGACAAATGTTTTCTTA 57.349 30.769 19.50 2.55 40.69 2.10
377 378 7.548196 TGTCTAAGTCGACAAATGTTTTCTT 57.452 32.000 19.50 1.36 40.69 2.52
378 379 7.730364 ATGTCTAAGTCGACAAATGTTTTCT 57.270 32.000 19.50 0.00 46.00 2.52
379 380 8.922676 TCTATGTCTAAGTCGACAAATGTTTTC 58.077 33.333 19.50 0.00 46.00 2.29
380 381 8.827177 TCTATGTCTAAGTCGACAAATGTTTT 57.173 30.769 19.50 3.68 46.00 2.43
381 382 8.873830 CATCTATGTCTAAGTCGACAAATGTTT 58.126 33.333 19.50 4.46 46.00 2.83
382 383 8.251026 TCATCTATGTCTAAGTCGACAAATGTT 58.749 33.333 19.50 5.23 46.00 2.71
383 384 7.772166 TCATCTATGTCTAAGTCGACAAATGT 58.228 34.615 19.50 0.00 46.00 2.71
384 385 8.634475 TTCATCTATGTCTAAGTCGACAAATG 57.366 34.615 19.50 4.98 46.00 2.32
385 386 9.254133 CATTCATCTATGTCTAAGTCGACAAAT 57.746 33.333 19.50 6.04 46.00 2.32
386 387 8.251026 ACATTCATCTATGTCTAAGTCGACAAA 58.749 33.333 19.50 3.86 46.00 2.83
387 388 7.702348 CACATTCATCTATGTCTAAGTCGACAA 59.298 37.037 19.50 4.26 46.00 3.18
388 389 7.196331 CACATTCATCTATGTCTAAGTCGACA 58.804 38.462 19.50 0.00 46.82 4.35
389 390 6.143118 GCACATTCATCTATGTCTAAGTCGAC 59.857 42.308 7.70 7.70 36.64 4.20
390 391 6.209361 GCACATTCATCTATGTCTAAGTCGA 58.791 40.000 0.00 0.00 36.64 4.20
391 392 5.116225 CGCACATTCATCTATGTCTAAGTCG 59.884 44.000 0.00 0.00 36.64 4.18
392 393 5.980116 ACGCACATTCATCTATGTCTAAGTC 59.020 40.000 0.00 0.00 36.64 3.01
393 394 5.750547 CACGCACATTCATCTATGTCTAAGT 59.249 40.000 0.00 0.00 36.64 2.24
394 395 5.750547 ACACGCACATTCATCTATGTCTAAG 59.249 40.000 0.00 0.00 36.64 2.18
395 396 5.660460 ACACGCACATTCATCTATGTCTAA 58.340 37.500 0.00 0.00 36.64 2.10
396 397 5.262588 ACACGCACATTCATCTATGTCTA 57.737 39.130 0.00 0.00 36.64 2.59
397 398 4.128925 ACACGCACATTCATCTATGTCT 57.871 40.909 0.00 0.00 36.64 3.41
398 399 6.018751 ACAATACACGCACATTCATCTATGTC 60.019 38.462 0.00 0.00 36.64 3.06
399 400 5.817296 ACAATACACGCACATTCATCTATGT 59.183 36.000 0.00 0.00 39.27 2.29
400 401 6.291067 ACAATACACGCACATTCATCTATG 57.709 37.500 0.00 0.00 0.00 2.23
401 402 6.143919 CGTACAATACACGCACATTCATCTAT 59.856 38.462 0.00 0.00 31.94 1.98
402 403 5.457473 CGTACAATACACGCACATTCATCTA 59.543 40.000 0.00 0.00 31.94 1.98
403 404 4.267690 CGTACAATACACGCACATTCATCT 59.732 41.667 0.00 0.00 31.94 2.90
404 405 4.032445 ACGTACAATACACGCACATTCATC 59.968 41.667 0.00 0.00 43.10 2.92
405 406 3.930229 ACGTACAATACACGCACATTCAT 59.070 39.130 0.00 0.00 43.10 2.57
406 407 3.122111 CACGTACAATACACGCACATTCA 59.878 43.478 0.00 0.00 43.10 2.57
407 408 3.122278 ACACGTACAATACACGCACATTC 59.878 43.478 0.00 0.00 43.10 2.67
408 409 3.061322 ACACGTACAATACACGCACATT 58.939 40.909 0.00 0.00 43.10 2.71
409 410 2.679450 ACACGTACAATACACGCACAT 58.321 42.857 0.00 0.00 43.10 3.21
410 411 2.137129 ACACGTACAATACACGCACA 57.863 45.000 0.00 0.00 43.10 4.57
411 412 3.508648 AAACACGTACAATACACGCAC 57.491 42.857 0.00 0.00 43.10 5.34
412 413 4.030418 CGATAAACACGTACAATACACGCA 59.970 41.667 0.00 0.00 43.10 5.24
413 414 4.262743 TCGATAAACACGTACAATACACGC 59.737 41.667 0.00 0.00 43.10 5.34
414 415 5.509272 AGTCGATAAACACGTACAATACACG 59.491 40.000 0.00 0.00 44.80 4.49
415 416 6.859715 AGTCGATAAACACGTACAATACAC 57.140 37.500 0.00 0.00 0.00 2.90
416 417 8.397148 TGATAGTCGATAAACACGTACAATACA 58.603 33.333 0.00 0.00 0.00 2.29
417 418 8.772306 TGATAGTCGATAAACACGTACAATAC 57.228 34.615 0.00 0.00 0.00 1.89
418 419 9.389570 CATGATAGTCGATAAACACGTACAATA 57.610 33.333 0.00 0.00 0.00 1.90
419 420 7.381408 CCATGATAGTCGATAAACACGTACAAT 59.619 37.037 0.00 0.00 0.00 2.71
420 421 6.693978 CCATGATAGTCGATAAACACGTACAA 59.306 38.462 0.00 0.00 0.00 2.41
421 422 6.183360 ACCATGATAGTCGATAAACACGTACA 60.183 38.462 0.00 0.00 0.00 2.90
422 423 6.204359 ACCATGATAGTCGATAAACACGTAC 58.796 40.000 0.00 0.00 0.00 3.67
423 424 6.381481 ACCATGATAGTCGATAAACACGTA 57.619 37.500 0.00 0.00 0.00 3.57
424 425 5.258456 ACCATGATAGTCGATAAACACGT 57.742 39.130 0.00 0.00 0.00 4.49
425 426 8.959734 TTATACCATGATAGTCGATAAACACG 57.040 34.615 0.00 0.00 0.00 4.49
426 427 8.861101 GCTTATACCATGATAGTCGATAAACAC 58.139 37.037 0.00 0.00 0.00 3.32
427 428 8.803235 AGCTTATACCATGATAGTCGATAAACA 58.197 33.333 0.00 0.00 0.00 2.83
431 432 9.682465 AGTTAGCTTATACCATGATAGTCGATA 57.318 33.333 0.00 0.00 0.00 2.92
432 433 8.582657 AGTTAGCTTATACCATGATAGTCGAT 57.417 34.615 0.00 0.00 0.00 3.59
433 434 7.997773 AGTTAGCTTATACCATGATAGTCGA 57.002 36.000 0.00 0.00 0.00 4.20
444 445 9.557061 GCCCCATAATATAAGTTAGCTTATACC 57.443 37.037 18.06 1.19 46.71 2.73
445 446 9.557061 GGCCCCATAATATAAGTTAGCTTATAC 57.443 37.037 18.06 6.16 46.71 1.47
447 448 7.126726 TCGGCCCCATAATATAAGTTAGCTTAT 59.873 37.037 15.15 15.15 46.37 1.73
448 449 6.441284 TCGGCCCCATAATATAAGTTAGCTTA 59.559 38.462 0.00 1.19 40.98 3.09
449 450 5.249852 TCGGCCCCATAATATAAGTTAGCTT 59.750 40.000 0.00 0.00 38.66 3.74
450 451 4.781087 TCGGCCCCATAATATAAGTTAGCT 59.219 41.667 0.00 0.00 0.00 3.32
451 452 5.093849 TCGGCCCCATAATATAAGTTAGC 57.906 43.478 0.00 0.00 0.00 3.09
452 453 5.396436 CCCTCGGCCCCATAATATAAGTTAG 60.396 48.000 0.00 0.00 0.00 2.34
453 454 4.472108 CCCTCGGCCCCATAATATAAGTTA 59.528 45.833 0.00 0.00 0.00 2.24
454 455 3.265995 CCCTCGGCCCCATAATATAAGTT 59.734 47.826 0.00 0.00 0.00 2.66
455 456 2.844348 CCCTCGGCCCCATAATATAAGT 59.156 50.000 0.00 0.00 0.00 2.24
456 457 3.112263 TCCCTCGGCCCCATAATATAAG 58.888 50.000 0.00 0.00 0.00 1.73
457 458 3.112263 CTCCCTCGGCCCCATAATATAA 58.888 50.000 0.00 0.00 0.00 0.98
458 459 2.045326 ACTCCCTCGGCCCCATAATATA 59.955 50.000 0.00 0.00 0.00 0.86
459 460 1.203440 ACTCCCTCGGCCCCATAATAT 60.203 52.381 0.00 0.00 0.00 1.28
460 461 0.192566 ACTCCCTCGGCCCCATAATA 59.807 55.000 0.00 0.00 0.00 0.98
461 462 0.192566 TACTCCCTCGGCCCCATAAT 59.807 55.000 0.00 0.00 0.00 1.28
462 463 0.761702 GTACTCCCTCGGCCCCATAA 60.762 60.000 0.00 0.00 0.00 1.90
463 464 1.152398 GTACTCCCTCGGCCCCATA 60.152 63.158 0.00 0.00 0.00 2.74
464 465 2.446036 GTACTCCCTCGGCCCCAT 60.446 66.667 0.00 0.00 0.00 4.00
465 466 1.951923 TATGTACTCCCTCGGCCCCA 61.952 60.000 0.00 0.00 0.00 4.96
466 467 0.761702 TTATGTACTCCCTCGGCCCC 60.762 60.000 0.00 0.00 0.00 5.80
467 468 0.391966 GTTATGTACTCCCTCGGCCC 59.608 60.000 0.00 0.00 0.00 5.80
468 469 1.411041 AGTTATGTACTCCCTCGGCC 58.589 55.000 0.00 0.00 28.23 6.13
469 470 3.825014 TGATAGTTATGTACTCCCTCGGC 59.175 47.826 0.00 0.00 38.33 5.54
470 471 6.390721 CAATGATAGTTATGTACTCCCTCGG 58.609 44.000 0.00 0.00 38.33 4.63
471 472 6.015350 ACCAATGATAGTTATGTACTCCCTCG 60.015 42.308 0.00 0.00 38.33 4.63
472 473 7.304497 ACCAATGATAGTTATGTACTCCCTC 57.696 40.000 0.00 0.00 38.33 4.30
473 474 6.270231 GGACCAATGATAGTTATGTACTCCCT 59.730 42.308 0.00 0.00 38.33 4.20
474 475 6.465084 GGACCAATGATAGTTATGTACTCCC 58.535 44.000 0.00 0.00 38.33 4.30
493 494 4.044308 TCTTATTGAAGCCTATGGGACCA 58.956 43.478 0.00 0.00 32.21 4.02
561 564 9.543018 GTTAATCTTCTATTTTCTTGGAACACG 57.457 33.333 0.00 0.00 39.29 4.49
566 569 9.314321 CGCTAGTTAATCTTCTATTTTCTTGGA 57.686 33.333 0.00 0.00 0.00 3.53
567 570 9.314321 TCGCTAGTTAATCTTCTATTTTCTTGG 57.686 33.333 0.00 0.00 0.00 3.61
569 572 9.535878 CCTCGCTAGTTAATCTTCTATTTTCTT 57.464 33.333 0.00 0.00 0.00 2.52
570 573 8.145122 CCCTCGCTAGTTAATCTTCTATTTTCT 58.855 37.037 0.00 0.00 0.00 2.52
571 574 7.927092 ACCCTCGCTAGTTAATCTTCTATTTTC 59.073 37.037 0.00 0.00 0.00 2.29
572 575 7.793036 ACCCTCGCTAGTTAATCTTCTATTTT 58.207 34.615 0.00 0.00 0.00 1.82
573 576 7.362802 ACCCTCGCTAGTTAATCTTCTATTT 57.637 36.000 0.00 0.00 0.00 1.40
574 577 6.980416 ACCCTCGCTAGTTAATCTTCTATT 57.020 37.500 0.00 0.00 0.00 1.73
575 578 8.653036 ATTACCCTCGCTAGTTAATCTTCTAT 57.347 34.615 0.00 0.00 0.00 1.98
576 579 8.474710 AATTACCCTCGCTAGTTAATCTTCTA 57.525 34.615 0.00 0.00 0.00 2.10
592 668 5.237344 CACATCATTCCGAGAAATTACCCTC 59.763 44.000 0.00 0.00 0.00 4.30
616 692 7.558161 TTCCATCAGAAATGATGTGTCATAC 57.442 36.000 15.09 0.00 44.20 2.39
637 716 4.424842 AGAGGATAGACTGATGGGATTCC 58.575 47.826 0.00 0.00 0.00 3.01
638 717 5.185635 CAGAGAGGATAGACTGATGGGATTC 59.814 48.000 0.00 0.00 32.90 2.52
642 721 3.164268 CCAGAGAGGATAGACTGATGGG 58.836 54.545 0.00 0.00 41.22 4.00
658 737 5.242393 TCTCTTTTGAATTTTCTGGCCAGAG 59.758 40.000 33.16 18.59 38.88 3.35
691 770 7.817418 TCTATAACCAATTATTTGCCTGGTC 57.183 36.000 0.00 0.00 41.36 4.02
710 789 5.761205 TGGTGGGCTAATTGCTTTTCTATA 58.239 37.500 0.00 0.00 42.39 1.31
714 793 3.524541 CATGGTGGGCTAATTGCTTTTC 58.475 45.455 0.00 0.00 42.39 2.29
721 800 3.133362 CAGAAATGCATGGTGGGCTAATT 59.867 43.478 0.00 0.00 0.00 1.40
727 806 0.899720 AAGCAGAAATGCATGGTGGG 59.100 50.000 0.00 0.00 37.25 4.61
785 864 1.623811 ACCTCGTGTTGAGTGGCTATT 59.376 47.619 0.00 0.00 43.64 1.73
794 873 2.741092 GGGAGCACCTCGTGTTGA 59.259 61.111 0.00 0.00 35.75 3.18
859 945 7.928706 AGTGGTGTTATAATTAAGCTAGCTGAG 59.071 37.037 20.16 0.00 0.00 3.35
870 956 5.758296 GCTGCTAGCAGTGGTGTTATAATTA 59.242 40.000 37.91 3.07 45.24 1.40
911 997 2.203126 GAATGCCGAGGCCTGAGG 60.203 66.667 12.00 15.56 41.09 3.86
912 998 0.393537 AAAGAATGCCGAGGCCTGAG 60.394 55.000 12.00 3.31 41.09 3.35
913 999 0.392998 GAAAGAATGCCGAGGCCTGA 60.393 55.000 12.00 0.00 41.09 3.86
914 1000 1.379642 GGAAAGAATGCCGAGGCCTG 61.380 60.000 12.00 1.85 41.09 4.85
915 1001 1.077429 GGAAAGAATGCCGAGGCCT 60.077 57.895 3.86 3.86 41.09 5.19
916 1002 1.077429 AGGAAAGAATGCCGAGGCC 60.077 57.895 12.05 0.00 41.09 5.19
917 1003 0.107459 AGAGGAAAGAATGCCGAGGC 60.107 55.000 7.26 7.26 42.35 4.70
926 1019 2.977808 AGTGTGGGAGAGAGGAAAGAA 58.022 47.619 0.00 0.00 0.00 2.52
938 1031 0.466543 GTGGTGTGTGTAGTGTGGGA 59.533 55.000 0.00 0.00 0.00 4.37
940 1033 0.179234 TGGTGGTGTGTGTAGTGTGG 59.821 55.000 0.00 0.00 0.00 4.17
960 1053 1.499688 CTCGCTGCTGCTGATGATGG 61.500 60.000 14.03 0.00 36.97 3.51
1095 1196 4.764336 TACGACTTGACCGCCGCG 62.764 66.667 5.59 5.59 0.00 6.46
1096 1197 3.177249 GTACGACTTGACCGCCGC 61.177 66.667 0.00 0.00 0.00 6.53
1203 1304 1.216710 GCGGACAGAGGACTTGAGG 59.783 63.158 0.00 0.00 0.00 3.86
1215 1316 4.617520 TTGAAGCTGCCGCGGACA 62.618 61.111 33.48 24.71 42.32 4.02
1360 1482 1.200716 GCAATAGCAGCACACACACAT 59.799 47.619 0.00 0.00 41.58 3.21
1362 1484 0.877071 AGCAATAGCAGCACACACAC 59.123 50.000 0.00 0.00 45.49 3.82
1373 1497 1.064296 CAGCAGCAGCAGCAATAGC 59.936 57.895 12.92 1.77 45.49 2.97
1414 1541 7.224557 CAGTACACACATATATGCAGCAACTTA 59.775 37.037 12.79 0.00 0.00 2.24
1458 1587 4.825634 AGCAGCAGTTCATACATGCATAAT 59.174 37.500 0.00 0.00 42.45 1.28
1494 1623 4.558496 GCAGTTAACCATGCAGCAACTTAA 60.558 41.667 13.36 0.00 42.11 1.85
1576 1727 3.062042 CAGTACAAACCACCGGTCTTAC 58.938 50.000 2.59 0.00 33.12 2.34
1577 1728 2.699846 ACAGTACAAACCACCGGTCTTA 59.300 45.455 2.59 0.00 33.12 2.10
1578 1729 1.487558 ACAGTACAAACCACCGGTCTT 59.512 47.619 2.59 0.00 33.12 3.01
1579 1730 1.125633 ACAGTACAAACCACCGGTCT 58.874 50.000 2.59 0.00 33.12 3.85
1580 1731 1.957668 AACAGTACAAACCACCGGTC 58.042 50.000 2.59 0.00 33.12 4.79
1581 1732 2.170187 TGTAACAGTACAAACCACCGGT 59.830 45.455 0.00 0.00 37.29 5.28
1582 1733 2.836262 TGTAACAGTACAAACCACCGG 58.164 47.619 0.00 0.00 37.29 5.28
1583 1734 4.083696 GGAATGTAACAGTACAAACCACCG 60.084 45.833 0.00 0.00 43.41 4.94
1597 1748 5.371115 TGCAACTTAAGCAGGAATGTAAC 57.629 39.130 1.29 0.00 37.02 2.50
1627 1781 3.376234 CACAGACCATGGCTTTGATACAG 59.624 47.826 13.04 0.00 0.00 2.74
1659 1814 3.757745 ACGGAGAACAAAGTTTGTGTG 57.242 42.857 21.53 11.89 44.59 3.82
1661 1816 4.793216 CAGAAACGGAGAACAAAGTTTGTG 59.207 41.667 21.53 11.16 44.59 3.33
1663 1818 4.981794 ACAGAAACGGAGAACAAAGTTTG 58.018 39.130 14.13 14.13 37.00 2.93
1667 1822 5.485662 AGAAACAGAAACGGAGAACAAAG 57.514 39.130 0.00 0.00 0.00 2.77
1669 1824 3.875134 GGAGAAACAGAAACGGAGAACAA 59.125 43.478 0.00 0.00 0.00 2.83
1677 1832 5.485662 ACAAGAAAGGAGAAACAGAAACG 57.514 39.130 0.00 0.00 0.00 3.60
1682 1837 8.190784 ACACAATAAACAAGAAAGGAGAAACAG 58.809 33.333 0.00 0.00 0.00 3.16
1728 1889 5.065218 GTCAACCATACAGCAACTTAGGATG 59.935 44.000 0.00 0.00 0.00 3.51
1732 1893 5.237815 TCAGTCAACCATACAGCAACTTAG 58.762 41.667 0.00 0.00 0.00 2.18
1738 1899 5.507985 CGATCTATCAGTCAACCATACAGCA 60.508 44.000 0.00 0.00 0.00 4.41
1750 1911 8.912787 TTAAAACAGAGAACGATCTATCAGTC 57.087 34.615 0.00 0.00 35.54 3.51
1757 1918 8.622948 AGGAAAATTAAAACAGAGAACGATCT 57.377 30.769 0.00 0.00 39.10 2.75
1763 1924 9.130661 TGTCATGAGGAAAATTAAAACAGAGAA 57.869 29.630 0.00 0.00 0.00 2.87
1767 1928 7.599998 CCCTTGTCATGAGGAAAATTAAAACAG 59.400 37.037 0.00 0.00 36.33 3.16
1774 1935 4.402616 TCCCCTTGTCATGAGGAAAATT 57.597 40.909 0.00 0.00 36.33 1.82
1783 1944 5.009010 CCGATCTTATTTTCCCCTTGTCATG 59.991 44.000 0.00 0.00 0.00 3.07
1786 1947 4.524053 ACCGATCTTATTTTCCCCTTGTC 58.476 43.478 0.00 0.00 0.00 3.18
1787 1948 4.586306 ACCGATCTTATTTTCCCCTTGT 57.414 40.909 0.00 0.00 0.00 3.16
1788 1949 7.284489 TGATTAACCGATCTTATTTTCCCCTTG 59.716 37.037 0.00 0.00 0.00 3.61
1798 1961 7.110155 ACAACCACTTGATTAACCGATCTTAT 58.890 34.615 0.00 0.00 0.00 1.73
1802 1965 6.018180 GGATACAACCACTTGATTAACCGATC 60.018 42.308 0.00 0.00 0.00 3.69
1803 1966 5.820947 GGATACAACCACTTGATTAACCGAT 59.179 40.000 0.00 0.00 0.00 4.18
1804 1967 5.046159 AGGATACAACCACTTGATTAACCGA 60.046 40.000 0.00 0.00 41.41 4.69
1805 1968 5.064707 CAGGATACAACCACTTGATTAACCG 59.935 44.000 0.00 0.00 41.41 4.44
1810 1973 4.307032 AGCAGGATACAACCACTTGATT 57.693 40.909 0.00 0.00 41.41 2.57
1811 1974 4.307032 AAGCAGGATACAACCACTTGAT 57.693 40.909 0.00 0.00 41.41 2.57
1813 1976 4.579869 AGTAAGCAGGATACAACCACTTG 58.420 43.478 0.00 0.00 41.41 3.16
1814 1977 4.910458 AGTAAGCAGGATACAACCACTT 57.090 40.909 0.00 0.00 41.41 3.16
1815 1978 4.910458 AAGTAAGCAGGATACAACCACT 57.090 40.909 0.00 0.00 41.41 4.00
1914 2123 2.634940 AGGCGTATATCTGCAGAACCAT 59.365 45.455 22.50 16.06 0.00 3.55
1915 2124 2.039418 AGGCGTATATCTGCAGAACCA 58.961 47.619 22.50 9.53 0.00 3.67
1916 2125 2.821991 AGGCGTATATCTGCAGAACC 57.178 50.000 22.50 14.66 0.00 3.62
1917 2126 4.506886 AGTAGGCGTATATCTGCAGAAC 57.493 45.455 22.50 13.72 0.00 3.01
1932 2141 4.143986 ACTGAAGGCTATGAAAGTAGGC 57.856 45.455 0.00 0.00 44.93 3.93
2019 2235 7.735326 ATGAGTGGTCTTTAACTAGTGGTAT 57.265 36.000 0.00 0.00 0.00 2.73
2023 2241 6.631016 TGCTATGAGTGGTCTTTAACTAGTG 58.369 40.000 0.00 0.00 0.00 2.74
2078 2296 9.162764 GGTTGATCACACTATAACTGTTGTAAT 57.837 33.333 2.69 0.00 0.00 1.89
2085 2303 8.716646 TTACATGGTTGATCACACTATAACTG 57.283 34.615 0.00 0.00 0.00 3.16
2088 2306 9.898152 TTCATTACATGGTTGATCACACTATAA 57.102 29.630 0.00 0.00 0.00 0.98
2091 2309 6.312672 CGTTCATTACATGGTTGATCACACTA 59.687 38.462 0.00 0.00 0.00 2.74
2096 2314 5.163764 GCTTCGTTCATTACATGGTTGATCA 60.164 40.000 0.00 0.00 0.00 2.92
2108 2326 2.156098 GGTGGTTGGCTTCGTTCATTA 58.844 47.619 0.00 0.00 0.00 1.90
2179 2397 7.151999 GTAGACTGCTACATACTGCATCTAT 57.848 40.000 0.00 0.00 45.10 1.98
2209 2427 0.743345 GTCCCGATTGAGAAACCCCG 60.743 60.000 0.00 0.00 0.00 5.73
2242 2460 4.380233 GCAGCAGAAACTGTTCAGCATAAT 60.380 41.667 12.25 0.00 45.93 1.28
2243 2461 3.058016 GCAGCAGAAACTGTTCAGCATAA 60.058 43.478 12.25 0.00 45.93 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.