Multiple sequence alignment - TraesCS7D01G435800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G435800 chr7D 100.000 1630 0 0 1 1630 554854541 554852912 0.000000e+00 3011.0
1 TraesCS7D01G435800 chr7D 100.000 1599 0 0 2123 3721 554852419 554850821 0.000000e+00 2953.0
2 TraesCS7D01G435800 chr7D 92.763 152 10 1 1 151 296376566 296376717 6.260000e-53 219.0
3 TraesCS7D01G435800 chr7D 91.720 157 12 1 1 156 295324527 295324371 2.250000e-52 217.0
4 TraesCS7D01G435800 chr7D 94.928 138 7 0 353 490 554864429 554864292 2.250000e-52 217.0
5 TraesCS7D01G435800 chr7D 93.478 138 9 0 183 320 554864429 554864292 4.870000e-49 206.0
6 TraesCS7D01G435800 chr7B 94.700 849 37 3 781 1629 601320542 601321382 0.000000e+00 1312.0
7 TraesCS7D01G435800 chr7B 94.922 709 28 4 2147 2853 601321444 601322146 0.000000e+00 1103.0
8 TraesCS7D01G435800 chr7B 88.928 569 59 4 232 798 601319963 601320529 0.000000e+00 699.0
9 TraesCS7D01G435800 chr7B 87.204 211 27 0 145 355 601320046 601320256 1.340000e-59 241.0
10 TraesCS7D01G435800 chr7B 91.473 129 10 1 402 529 601319963 601320091 3.820000e-40 176.0
11 TraesCS7D01G435800 chr7A 92.130 953 37 18 2142 3081 641042014 641042941 0.000000e+00 1310.0
12 TraesCS7D01G435800 chr7A 93.342 736 44 2 900 1630 641041224 641041959 0.000000e+00 1083.0
13 TraesCS7D01G435800 chr7A 87.296 614 41 20 3140 3721 641042940 641043548 0.000000e+00 667.0
14 TraesCS7D01G435800 chr7A 88.221 399 41 6 460 855 641040821 641041216 4.350000e-129 472.0
15 TraesCS7D01G435800 chr7A 95.575 113 5 0 362 474 641040693 641040805 8.210000e-42 182.0
16 TraesCS7D01G435800 chr7A 94.737 38 0 2 3484 3521 681788182 681788147 1.440000e-04 58.4
17 TraesCS7D01G435800 chr5D 95.172 145 7 0 1 145 272689445 272689301 2.890000e-56 230.0
18 TraesCS7D01G435800 chr5D 92.208 154 12 0 1 154 169448016 169447863 6.260000e-53 219.0
19 TraesCS7D01G435800 chr1A 95.172 145 7 0 1 145 464351304 464351448 2.890000e-56 230.0
20 TraesCS7D01G435800 chr4D 94.483 145 8 0 1 145 278264336 278264192 1.340000e-54 224.0
21 TraesCS7D01G435800 chr1D 94.483 145 8 0 1 145 236595691 236595547 1.340000e-54 224.0
22 TraesCS7D01G435800 chr1D 94.483 145 8 0 1 145 292429821 292429677 1.340000e-54 224.0
23 TraesCS7D01G435800 chr4A 92.763 152 10 1 1 151 139346185 139346336 6.260000e-53 219.0
24 TraesCS7D01G435800 chr3A 85.185 81 11 1 3244 3324 20839372 20839451 8.570000e-12 82.4
25 TraesCS7D01G435800 chr5B 89.583 48 3 2 3163 3209 391808810 391808856 4.010000e-05 60.2
26 TraesCS7D01G435800 chr6B 82.540 63 10 1 3404 3466 200033711 200033772 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G435800 chr7D 554850821 554854541 3720 True 2982.0 3011 100.0000 1 3721 2 chr7D.!!$R2 3720
1 TraesCS7D01G435800 chr7B 601319963 601322146 2183 False 706.2 1312 91.4454 145 2853 5 chr7B.!!$F1 2708
2 TraesCS7D01G435800 chr7A 641040693 641043548 2855 False 742.8 1310 91.3128 362 3721 5 chr7A.!!$F1 3359

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.313987 CCTACAGGATCGCATGCGTA 59.686 55.000 36.50 24.34 37.84 4.42 F
196 197 0.892755 AAGCGGTACCGATCAACTCA 59.107 50.000 37.62 0.00 42.83 3.41 F
197 198 1.112113 AGCGGTACCGATCAACTCAT 58.888 50.000 37.62 7.91 42.83 2.90 F
2288 2360 1.061411 CGTCACGGCGATCTACGAA 59.939 57.895 16.62 0.00 45.77 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 1545 2.770048 AGGCTGAAGGGATCGGGG 60.770 66.667 0.00 0.00 34.76 5.73 R
2149 2218 4.691216 CGTAGTCCTGTATCGATCATCAGA 59.309 45.833 19.66 4.49 0.00 3.27 R
2339 2411 1.887854 TCCACGGTCATCACGAAGTTA 59.112 47.619 0.00 0.00 41.61 2.24 R
3143 3222 0.036388 AGCGATTCCGAGGCTTGAAA 60.036 50.000 2.43 0.00 38.22 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.524717 ACTTTTAGAATTGCATGTGTAGGTT 57.475 32.000 0.00 0.00 0.00 3.50
25 26 7.370383 ACTTTTAGAATTGCATGTGTAGGTTG 58.630 34.615 0.00 0.00 0.00 3.77
26 27 7.230510 ACTTTTAGAATTGCATGTGTAGGTTGA 59.769 33.333 0.00 0.00 0.00 3.18
27 28 7.701539 TTTAGAATTGCATGTGTAGGTTGAT 57.298 32.000 0.00 0.00 0.00 2.57
28 29 7.701539 TTAGAATTGCATGTGTAGGTTGATT 57.298 32.000 0.00 0.00 0.00 2.57
29 30 8.800370 TTAGAATTGCATGTGTAGGTTGATTA 57.200 30.769 0.00 0.00 0.00 1.75
30 31 7.886629 AGAATTGCATGTGTAGGTTGATTAT 57.113 32.000 0.00 0.00 0.00 1.28
31 32 8.297470 AGAATTGCATGTGTAGGTTGATTATT 57.703 30.769 0.00 0.00 0.00 1.40
32 33 8.752187 AGAATTGCATGTGTAGGTTGATTATTT 58.248 29.630 0.00 0.00 0.00 1.40
33 34 8.706492 AATTGCATGTGTAGGTTGATTATTTG 57.294 30.769 0.00 0.00 0.00 2.32
34 35 7.459795 TTGCATGTGTAGGTTGATTATTTGA 57.540 32.000 0.00 0.00 0.00 2.69
35 36 7.459795 TGCATGTGTAGGTTGATTATTTGAA 57.540 32.000 0.00 0.00 0.00 2.69
36 37 8.065473 TGCATGTGTAGGTTGATTATTTGAAT 57.935 30.769 0.00 0.00 0.00 2.57
37 38 8.530311 TGCATGTGTAGGTTGATTATTTGAATT 58.470 29.630 0.00 0.00 0.00 2.17
38 39 8.810427 GCATGTGTAGGTTGATTATTTGAATTG 58.190 33.333 0.00 0.00 0.00 2.32
39 40 9.859427 CATGTGTAGGTTGATTATTTGAATTGT 57.141 29.630 0.00 0.00 0.00 2.71
40 41 9.859427 ATGTGTAGGTTGATTATTTGAATTGTG 57.141 29.630 0.00 0.00 0.00 3.33
41 42 7.812191 TGTGTAGGTTGATTATTTGAATTGTGC 59.188 33.333 0.00 0.00 0.00 4.57
42 43 8.028938 GTGTAGGTTGATTATTTGAATTGTGCT 58.971 33.333 0.00 0.00 0.00 4.40
43 44 9.237187 TGTAGGTTGATTATTTGAATTGTGCTA 57.763 29.630 0.00 0.00 0.00 3.49
46 47 8.806146 AGGTTGATTATTTGAATTGTGCTAAGT 58.194 29.630 0.00 0.00 0.00 2.24
47 48 9.423061 GGTTGATTATTTGAATTGTGCTAAGTT 57.577 29.630 0.00 0.00 0.00 2.66
49 50 9.979578 TTGATTATTTGAATTGTGCTAAGTTGT 57.020 25.926 0.00 0.00 0.00 3.32
50 51 9.979578 TGATTATTTGAATTGTGCTAAGTTGTT 57.020 25.926 0.00 0.00 0.00 2.83
58 59 9.462174 TGAATTGTGCTAAGTTGTTAAAATCTG 57.538 29.630 0.00 0.00 0.00 2.90
59 60 7.873739 ATTGTGCTAAGTTGTTAAAATCTGC 57.126 32.000 0.00 0.00 0.00 4.26
60 61 5.768317 TGTGCTAAGTTGTTAAAATCTGCC 58.232 37.500 0.00 0.00 0.00 4.85
61 62 5.300539 TGTGCTAAGTTGTTAAAATCTGCCA 59.699 36.000 0.00 0.00 0.00 4.92
62 63 6.183360 TGTGCTAAGTTGTTAAAATCTGCCAA 60.183 34.615 0.00 0.00 0.00 4.52
63 64 6.363357 GTGCTAAGTTGTTAAAATCTGCCAAG 59.637 38.462 0.00 0.00 0.00 3.61
64 65 6.264292 TGCTAAGTTGTTAAAATCTGCCAAGA 59.736 34.615 0.00 0.00 36.69 3.02
65 66 7.039784 TGCTAAGTTGTTAAAATCTGCCAAGAT 60.040 33.333 0.00 0.00 45.48 2.40
77 78 6.872585 ATCTGCCAAGATTTAAAATTGGGA 57.127 33.333 25.39 23.21 40.42 4.37
78 79 6.678568 TCTGCCAAGATTTAAAATTGGGAA 57.321 33.333 25.39 15.97 42.82 3.97
79 80 7.072263 TCTGCCAAGATTTAAAATTGGGAAA 57.928 32.000 25.39 14.58 42.82 3.13
80 81 7.512992 TCTGCCAAGATTTAAAATTGGGAAAA 58.487 30.769 25.39 16.24 42.82 2.29
81 82 8.162746 TCTGCCAAGATTTAAAATTGGGAAAAT 58.837 29.630 25.39 0.00 42.82 1.82
82 83 8.108551 TGCCAAGATTTAAAATTGGGAAAATG 57.891 30.769 25.39 8.76 40.87 2.32
83 84 7.028962 GCCAAGATTTAAAATTGGGAAAATGC 58.971 34.615 25.39 12.90 43.06 3.56
84 85 7.094248 GCCAAGATTTAAAATTGGGAAAATGCT 60.094 33.333 25.39 0.00 43.06 3.79
85 86 9.447157 CCAAGATTTAAAATTGGGAAAATGCTA 57.553 29.630 20.31 0.00 39.87 3.49
98 99 9.447157 TTGGGAAAATGCTAGATTTTTATTTGG 57.553 29.630 11.63 0.00 32.03 3.28
99 100 8.601546 TGGGAAAATGCTAGATTTTTATTTGGT 58.398 29.630 11.63 0.00 32.03 3.67
100 101 9.098355 GGGAAAATGCTAGATTTTTATTTGGTC 57.902 33.333 11.63 1.61 32.03 4.02
101 102 9.651913 GGAAAATGCTAGATTTTTATTTGGTCA 57.348 29.630 11.63 0.00 32.03 4.02
107 108 9.515226 TGCTAGATTTTTATTTGGTCAAGTAGT 57.485 29.630 0.00 0.00 0.00 2.73
108 109 9.989869 GCTAGATTTTTATTTGGTCAAGTAGTC 57.010 33.333 0.00 0.00 0.00 2.59
117 118 9.832445 TTATTTGGTCAAGTAGTCTAATCATCC 57.168 33.333 0.00 0.00 0.00 3.51
118 119 5.515797 TGGTCAAGTAGTCTAATCATCCG 57.484 43.478 0.00 0.00 0.00 4.18
119 120 4.202121 TGGTCAAGTAGTCTAATCATCCGC 60.202 45.833 0.00 0.00 0.00 5.54
120 121 4.299978 GTCAAGTAGTCTAATCATCCGCC 58.700 47.826 0.00 0.00 0.00 6.13
121 122 4.038162 GTCAAGTAGTCTAATCATCCGCCT 59.962 45.833 0.00 0.00 0.00 5.52
122 123 4.278669 TCAAGTAGTCTAATCATCCGCCTC 59.721 45.833 0.00 0.00 0.00 4.70
123 124 4.107127 AGTAGTCTAATCATCCGCCTCT 57.893 45.455 0.00 0.00 0.00 3.69
124 125 5.244189 AGTAGTCTAATCATCCGCCTCTA 57.756 43.478 0.00 0.00 0.00 2.43
125 126 5.250200 AGTAGTCTAATCATCCGCCTCTAG 58.750 45.833 0.00 0.00 0.00 2.43
126 127 4.374689 AGTCTAATCATCCGCCTCTAGA 57.625 45.455 0.00 0.00 0.00 2.43
127 128 4.076394 AGTCTAATCATCCGCCTCTAGAC 58.924 47.826 0.00 0.00 36.89 2.59
128 129 3.821600 GTCTAATCATCCGCCTCTAGACA 59.178 47.826 0.00 0.00 36.72 3.41
129 130 4.461081 GTCTAATCATCCGCCTCTAGACAT 59.539 45.833 0.00 0.00 36.72 3.06
130 131 5.648526 GTCTAATCATCCGCCTCTAGACATA 59.351 44.000 0.00 0.00 36.72 2.29
131 132 4.792521 AATCATCCGCCTCTAGACATAC 57.207 45.455 0.00 0.00 0.00 2.39
132 133 3.510531 TCATCCGCCTCTAGACATACT 57.489 47.619 0.00 0.00 0.00 2.12
133 134 3.833732 TCATCCGCCTCTAGACATACTT 58.166 45.455 0.00 0.00 0.00 2.24
134 135 4.215908 TCATCCGCCTCTAGACATACTTT 58.784 43.478 0.00 0.00 0.00 2.66
135 136 4.278669 TCATCCGCCTCTAGACATACTTTC 59.721 45.833 0.00 0.00 0.00 2.62
136 137 2.617308 TCCGCCTCTAGACATACTTTCG 59.383 50.000 0.00 0.00 0.00 3.46
137 138 2.386249 CGCCTCTAGACATACTTTCGC 58.614 52.381 0.00 0.00 0.00 4.70
138 139 2.033550 CGCCTCTAGACATACTTTCGCT 59.966 50.000 0.00 0.00 0.00 4.93
139 140 3.634283 GCCTCTAGACATACTTTCGCTC 58.366 50.000 0.00 0.00 0.00 5.03
140 141 3.551250 GCCTCTAGACATACTTTCGCTCC 60.551 52.174 0.00 0.00 0.00 4.70
141 142 3.886505 CCTCTAGACATACTTTCGCTCCT 59.113 47.826 0.00 0.00 0.00 3.69
142 143 5.064558 CCTCTAGACATACTTTCGCTCCTA 58.935 45.833 0.00 0.00 0.00 2.94
143 144 5.049267 CCTCTAGACATACTTTCGCTCCTAC 60.049 48.000 0.00 0.00 0.00 3.18
144 145 5.434408 TCTAGACATACTTTCGCTCCTACA 58.566 41.667 0.00 0.00 0.00 2.74
145 146 4.640789 AGACATACTTTCGCTCCTACAG 57.359 45.455 0.00 0.00 0.00 2.74
146 147 3.381908 AGACATACTTTCGCTCCTACAGG 59.618 47.826 0.00 0.00 0.00 4.00
147 148 3.362706 ACATACTTTCGCTCCTACAGGA 58.637 45.455 0.00 0.00 43.08 3.86
148 149 3.961408 ACATACTTTCGCTCCTACAGGAT 59.039 43.478 0.00 0.00 44.46 3.24
149 150 4.038162 ACATACTTTCGCTCCTACAGGATC 59.962 45.833 0.00 0.00 44.46 3.36
152 153 3.120105 CGCTCCTACAGGATCGCA 58.880 61.111 8.44 0.00 45.08 5.10
153 154 1.662608 CGCTCCTACAGGATCGCAT 59.337 57.895 8.44 0.00 45.08 4.73
154 155 0.665670 CGCTCCTACAGGATCGCATG 60.666 60.000 8.44 0.00 45.08 4.06
155 156 0.948141 GCTCCTACAGGATCGCATGC 60.948 60.000 7.91 7.91 44.46 4.06
156 157 0.665670 CTCCTACAGGATCGCATGCG 60.666 60.000 33.61 33.61 44.46 4.73
157 158 1.068083 CCTACAGGATCGCATGCGT 59.932 57.895 36.50 24.80 37.84 5.24
158 159 0.313987 CCTACAGGATCGCATGCGTA 59.686 55.000 36.50 24.34 37.84 4.42
159 160 1.067565 CCTACAGGATCGCATGCGTAT 60.068 52.381 36.50 27.49 37.84 3.06
160 161 2.163613 CCTACAGGATCGCATGCGTATA 59.836 50.000 36.50 20.73 37.84 1.47
161 162 2.812358 ACAGGATCGCATGCGTATAA 57.188 45.000 36.50 20.34 40.74 0.98
162 163 3.319137 ACAGGATCGCATGCGTATAAT 57.681 42.857 36.50 24.12 40.74 1.28
163 164 3.664107 ACAGGATCGCATGCGTATAATT 58.336 40.909 36.50 17.38 40.74 1.40
164 165 4.816392 ACAGGATCGCATGCGTATAATTA 58.184 39.130 36.50 18.42 40.74 1.40
165 166 4.864806 ACAGGATCGCATGCGTATAATTAG 59.135 41.667 36.50 21.77 40.74 1.73
166 167 4.268644 CAGGATCGCATGCGTATAATTAGG 59.731 45.833 36.50 15.97 40.74 2.69
167 168 4.159693 AGGATCGCATGCGTATAATTAGGA 59.840 41.667 36.50 16.14 40.74 2.94
168 169 5.050490 GGATCGCATGCGTATAATTAGGAT 58.950 41.667 36.50 20.10 40.74 3.24
169 170 5.175856 GGATCGCATGCGTATAATTAGGATC 59.824 44.000 36.50 25.88 40.74 3.36
170 171 5.066968 TCGCATGCGTATAATTAGGATCA 57.933 39.130 36.50 12.00 40.74 2.92
171 172 5.102313 TCGCATGCGTATAATTAGGATCAG 58.898 41.667 36.50 5.47 40.74 2.90
172 173 5.102313 CGCATGCGTATAATTAGGATCAGA 58.898 41.667 31.33 0.00 34.35 3.27
173 174 5.230936 CGCATGCGTATAATTAGGATCAGAG 59.769 44.000 31.33 0.00 34.35 3.35
174 175 6.102663 GCATGCGTATAATTAGGATCAGAGT 58.897 40.000 0.00 0.00 0.00 3.24
175 176 6.591834 GCATGCGTATAATTAGGATCAGAGTT 59.408 38.462 0.00 0.00 0.00 3.01
176 177 7.759886 GCATGCGTATAATTAGGATCAGAGTTA 59.240 37.037 0.00 0.00 0.00 2.24
177 178 9.639601 CATGCGTATAATTAGGATCAGAGTTAA 57.360 33.333 0.00 0.00 0.00 2.01
179 180 9.692749 TGCGTATAATTAGGATCAGAGTTAAAG 57.307 33.333 0.00 0.00 0.00 1.85
180 181 8.648968 GCGTATAATTAGGATCAGAGTTAAAGC 58.351 37.037 0.00 0.00 0.00 3.51
181 182 8.851416 CGTATAATTAGGATCAGAGTTAAAGCG 58.149 37.037 0.00 0.00 0.00 4.68
182 183 9.141400 GTATAATTAGGATCAGAGTTAAAGCGG 57.859 37.037 0.00 0.00 0.00 5.52
183 184 5.615925 ATTAGGATCAGAGTTAAAGCGGT 57.384 39.130 0.00 0.00 0.00 5.68
184 185 6.726490 ATTAGGATCAGAGTTAAAGCGGTA 57.274 37.500 0.00 0.00 0.00 4.02
185 186 4.388378 AGGATCAGAGTTAAAGCGGTAC 57.612 45.455 0.00 0.00 0.00 3.34
186 187 3.132467 AGGATCAGAGTTAAAGCGGTACC 59.868 47.826 0.16 0.16 0.00 3.34
187 188 2.642139 TCAGAGTTAAAGCGGTACCG 57.358 50.000 30.06 30.06 43.09 4.02
188 189 2.161855 TCAGAGTTAAAGCGGTACCGA 58.838 47.619 37.62 14.37 42.83 4.69
189 190 2.756760 TCAGAGTTAAAGCGGTACCGAT 59.243 45.455 37.62 30.29 42.83 4.18
190 191 3.114065 CAGAGTTAAAGCGGTACCGATC 58.886 50.000 37.62 20.63 42.83 3.69
191 192 2.756760 AGAGTTAAAGCGGTACCGATCA 59.243 45.455 37.62 20.00 42.83 2.92
192 193 3.194116 AGAGTTAAAGCGGTACCGATCAA 59.806 43.478 37.62 24.44 42.83 2.57
193 194 3.256558 AGTTAAAGCGGTACCGATCAAC 58.743 45.455 37.62 32.22 42.83 3.18
194 195 3.056322 AGTTAAAGCGGTACCGATCAACT 60.056 43.478 37.62 33.63 42.83 3.16
195 196 2.005971 AAAGCGGTACCGATCAACTC 57.994 50.000 37.62 17.58 42.83 3.01
196 197 0.892755 AAGCGGTACCGATCAACTCA 59.107 50.000 37.62 0.00 42.83 3.41
197 198 1.112113 AGCGGTACCGATCAACTCAT 58.888 50.000 37.62 7.91 42.83 2.90
198 199 1.202417 AGCGGTACCGATCAACTCATG 60.202 52.381 37.62 4.48 42.83 3.07
199 200 1.209128 CGGTACCGATCAACTCATGC 58.791 55.000 30.64 0.00 42.83 4.06
200 201 1.470805 CGGTACCGATCAACTCATGCA 60.471 52.381 30.64 0.00 42.83 3.96
201 202 2.803133 CGGTACCGATCAACTCATGCAT 60.803 50.000 30.64 0.00 42.83 3.96
202 203 3.552068 CGGTACCGATCAACTCATGCATA 60.552 47.826 30.64 0.00 42.83 3.14
203 204 4.377021 GGTACCGATCAACTCATGCATAA 58.623 43.478 0.00 0.00 0.00 1.90
204 205 4.814234 GGTACCGATCAACTCATGCATAAA 59.186 41.667 0.00 0.00 0.00 1.40
205 206 5.295787 GGTACCGATCAACTCATGCATAAAA 59.704 40.000 0.00 0.00 0.00 1.52
206 207 6.017109 GGTACCGATCAACTCATGCATAAAAT 60.017 38.462 0.00 0.00 0.00 1.82
207 208 6.455360 ACCGATCAACTCATGCATAAAATT 57.545 33.333 0.00 0.00 0.00 1.82
208 209 7.566760 ACCGATCAACTCATGCATAAAATTA 57.433 32.000 0.00 0.00 0.00 1.40
209 210 7.995289 ACCGATCAACTCATGCATAAAATTAA 58.005 30.769 0.00 0.00 0.00 1.40
210 211 8.465999 ACCGATCAACTCATGCATAAAATTAAA 58.534 29.630 0.00 0.00 0.00 1.52
211 212 9.299963 CCGATCAACTCATGCATAAAATTAAAA 57.700 29.630 0.00 0.00 0.00 1.52
218 219 9.807649 ACTCATGCATAAAATTAAAAGATGACC 57.192 29.630 0.00 0.00 0.00 4.02
219 220 9.252962 CTCATGCATAAAATTAAAAGATGACCC 57.747 33.333 0.00 0.00 0.00 4.46
220 221 8.756927 TCATGCATAAAATTAAAAGATGACCCA 58.243 29.630 0.00 0.00 0.00 4.51
221 222 8.819974 CATGCATAAAATTAAAAGATGACCCAC 58.180 33.333 0.00 0.00 0.00 4.61
222 223 8.133024 TGCATAAAATTAAAAGATGACCCACT 57.867 30.769 0.00 0.00 0.00 4.00
223 224 9.249053 TGCATAAAATTAAAAGATGACCCACTA 57.751 29.630 0.00 0.00 0.00 2.74
234 235 8.877864 AAAGATGACCCACTAATTATGTTTCA 57.122 30.769 0.00 0.00 0.00 2.69
235 236 8.877864 AAGATGACCCACTAATTATGTTTCAA 57.122 30.769 0.00 0.00 0.00 2.69
236 237 8.877864 AGATGACCCACTAATTATGTTTCAAA 57.122 30.769 0.00 0.00 0.00 2.69
237 238 9.479549 AGATGACCCACTAATTATGTTTCAAAT 57.520 29.630 0.00 0.00 0.00 2.32
249 250 9.559958 AATTATGTTTCAAATTAGAAGACGCAG 57.440 29.630 0.00 0.00 0.00 5.18
268 269 5.063060 ACGCAGTTAAATTGGTCGAGATAAC 59.937 40.000 0.00 0.00 37.78 1.89
309 310 8.828688 ATGATGATACGGATAATCATGCATAG 57.171 34.615 18.43 0.00 40.78 2.23
316 317 9.770097 ATACGGATAATCATGCATAGAATTAGG 57.230 33.333 0.00 1.90 0.00 2.69
320 321 8.986847 GGATAATCATGCATAGAATTAGGATCG 58.013 37.037 0.00 0.00 0.00 3.69
322 323 5.151297 TCATGCATAGAATTAGGATCGCA 57.849 39.130 0.00 0.00 0.00 5.10
342 343 5.519927 TCGCATGCATATAATTAGGATCACG 59.480 40.000 19.57 0.00 0.00 4.35
363 364 3.467803 GGCTAAAGCGGTACTGATCAAT 58.532 45.455 5.68 0.00 43.26 2.57
463 464 8.927675 TTAAGGCAACCCATTAATTACGATAT 57.072 30.769 0.00 0.00 37.17 1.63
512 543 8.763049 ATCACATGTGTATAATTAGGATCACG 57.237 34.615 24.63 0.00 0.00 4.35
514 545 5.932303 ACATGTGTATAATTAGGATCACGGC 59.068 40.000 0.00 0.00 0.00 5.68
537 568 1.229428 AGCGGTCCGATTGCATAATG 58.771 50.000 17.49 0.00 0.00 1.90
574 606 1.680338 GGGATCGTGGAGGAAAATGG 58.320 55.000 0.00 0.00 0.00 3.16
595 627 7.880160 ATGGAAGGAAATCAACGAATAATCA 57.120 32.000 0.00 0.00 0.00 2.57
597 629 8.292444 TGGAAGGAAATCAACGAATAATCATT 57.708 30.769 0.00 0.00 0.00 2.57
620 652 1.866601 AGCTTTTGCCAATTTCGCAAC 59.133 42.857 8.82 0.23 45.48 4.17
849 913 4.720649 TTGTTCGACCATTGTTTTTCCA 57.279 36.364 0.00 0.00 0.00 3.53
869 933 3.677121 CCATTTCGCGAGAGGATATGAAG 59.323 47.826 13.27 0.00 43.69 3.02
989 1058 2.125673 GCGAGCGAACTAGCCCAA 60.126 61.111 0.00 0.00 38.49 4.12
1261 1330 3.217743 CCTCCTACGACGCCCTCC 61.218 72.222 0.00 0.00 0.00 4.30
1299 1368 2.813042 GTGGAGCAGCTCAGCGTC 60.813 66.667 24.09 6.70 40.15 5.19
1303 1372 4.767841 AGCAGCTCAGCGTCGACG 62.768 66.667 32.57 32.57 40.15 5.12
2288 2360 1.061411 CGTCACGGCGATCTACGAA 59.939 57.895 16.62 0.00 45.77 3.85
2683 2755 1.134699 CCTTGCCGAGTTCATAGCTCA 60.135 52.381 0.00 0.00 33.45 4.26
2724 2796 1.951602 TCACCGTCTCGTTCTGAAGAA 59.048 47.619 0.00 0.00 0.00 2.52
2725 2797 2.031069 TCACCGTCTCGTTCTGAAGAAG 60.031 50.000 0.00 0.00 34.27 2.85
2726 2798 2.031069 CACCGTCTCGTTCTGAAGAAGA 60.031 50.000 0.00 0.00 34.27 2.87
2780 2852 5.751243 AATAACTTTGTGAACAGAACGCT 57.249 34.783 0.00 0.00 0.00 5.07
2793 2865 0.229753 GAACGCTGAACACTGTCACG 59.770 55.000 0.00 0.00 0.00 4.35
2864 2938 5.011125 CCAGTTCTCTGTTTCTCTTCCTGTA 59.989 44.000 0.00 0.00 39.82 2.74
2869 2943 7.397892 TCTCTGTTTCTCTTCCTGTATAGTG 57.602 40.000 0.00 0.00 0.00 2.74
2870 2944 5.967088 TCTGTTTCTCTTCCTGTATAGTGC 58.033 41.667 0.00 0.00 0.00 4.40
2880 2954 3.009723 CCTGTATAGTGCCACAAACTGG 58.990 50.000 0.00 1.99 44.08 4.00
2901 2975 6.725834 ACTGGTATTTTGATTTGGAGTGGAAT 59.274 34.615 0.00 0.00 0.00 3.01
2902 2976 7.093771 ACTGGTATTTTGATTTGGAGTGGAATC 60.094 37.037 0.00 0.00 33.83 2.52
2903 2977 6.953520 TGGTATTTTGATTTGGAGTGGAATCT 59.046 34.615 0.00 0.00 34.24 2.40
2906 2980 9.710900 GTATTTTGATTTGGAGTGGAATCTTTT 57.289 29.630 0.00 0.00 34.24 2.27
2935 3009 4.580580 GGTTGGAACTTGTCTTTGATCAGT 59.419 41.667 0.00 0.00 0.00 3.41
2962 3036 8.934023 ATGAATGGTTTCTACCTAACTTTCAA 57.066 30.769 0.00 0.00 45.27 2.69
2976 3050 5.405935 AACTTTCAAAGCCTTCAGTTTGT 57.594 34.783 0.00 0.00 35.54 2.83
2987 3066 4.558697 GCCTTCAGTTTGTCACCATAAACC 60.559 45.833 0.00 0.00 37.47 3.27
3000 3079 1.869767 CATAAACCGCAGAGCTCATCC 59.130 52.381 17.77 2.25 0.00 3.51
3002 3081 0.254178 AAACCGCAGAGCTCATCCAT 59.746 50.000 17.77 0.00 0.00 3.41
3003 3082 0.254178 AACCGCAGAGCTCATCCATT 59.746 50.000 17.77 1.47 0.00 3.16
3004 3083 0.463295 ACCGCAGAGCTCATCCATTG 60.463 55.000 17.77 5.19 0.00 2.82
3005 3084 1.164662 CCGCAGAGCTCATCCATTGG 61.165 60.000 17.77 3.71 0.00 3.16
3006 3085 1.783031 CGCAGAGCTCATCCATTGGC 61.783 60.000 17.77 5.20 0.00 4.52
3007 3086 0.750546 GCAGAGCTCATCCATTGGCA 60.751 55.000 17.77 0.00 0.00 4.92
3008 3087 1.309950 CAGAGCTCATCCATTGGCAG 58.690 55.000 17.77 0.00 0.00 4.85
3009 3088 0.917533 AGAGCTCATCCATTGGCAGT 59.082 50.000 17.77 0.00 0.00 4.40
3036 3115 2.033299 ACCGACAGTCTTGCAAACAATG 59.967 45.455 0.00 2.15 34.61 2.82
3085 3164 9.780186 ATTAATTACACTATGCTTTCTACTCCC 57.220 33.333 0.00 0.00 0.00 4.30
3087 3166 6.466885 TTACACTATGCTTTCTACTCCCTC 57.533 41.667 0.00 0.00 0.00 4.30
3088 3167 3.707102 ACACTATGCTTTCTACTCCCTCC 59.293 47.826 0.00 0.00 0.00 4.30
3090 3169 1.867363 ATGCTTTCTACTCCCTCCGT 58.133 50.000 0.00 0.00 0.00 4.69
3091 3170 1.640917 TGCTTTCTACTCCCTCCGTT 58.359 50.000 0.00 0.00 0.00 4.44
3092 3171 2.811410 TGCTTTCTACTCCCTCCGTTA 58.189 47.619 0.00 0.00 0.00 3.18
3093 3172 2.494870 TGCTTTCTACTCCCTCCGTTAC 59.505 50.000 0.00 0.00 0.00 2.50
3094 3173 2.759535 GCTTTCTACTCCCTCCGTTACT 59.240 50.000 0.00 0.00 0.00 2.24
3095 3174 3.950395 GCTTTCTACTCCCTCCGTTACTA 59.050 47.826 0.00 0.00 0.00 1.82
3096 3175 4.400567 GCTTTCTACTCCCTCCGTTACTAA 59.599 45.833 0.00 0.00 0.00 2.24
3097 3176 5.105595 GCTTTCTACTCCCTCCGTTACTAAA 60.106 44.000 0.00 0.00 0.00 1.85
3098 3177 6.406737 GCTTTCTACTCCCTCCGTTACTAAAT 60.407 42.308 0.00 0.00 0.00 1.40
3099 3178 7.486407 TTTCTACTCCCTCCGTTACTAAATT 57.514 36.000 0.00 0.00 0.00 1.82
3100 3179 7.486407 TTCTACTCCCTCCGTTACTAAATTT 57.514 36.000 0.00 0.00 0.00 1.82
3101 3180 8.593945 TTCTACTCCCTCCGTTACTAAATTTA 57.406 34.615 0.00 0.00 0.00 1.40
3102 3181 8.230472 TCTACTCCCTCCGTTACTAAATTTAG 57.770 38.462 21.21 21.21 36.82 1.85
3103 3182 6.864151 ACTCCCTCCGTTACTAAATTTAGT 57.136 37.500 28.78 28.78 45.39 2.24
3104 3183 7.961326 ACTCCCTCCGTTACTAAATTTAGTA 57.039 36.000 26.93 26.93 43.36 1.82
3105 3184 8.544687 ACTCCCTCCGTTACTAAATTTAGTAT 57.455 34.615 29.65 14.12 43.54 2.12
3106 3185 9.646522 ACTCCCTCCGTTACTAAATTTAGTATA 57.353 33.333 29.65 20.32 43.54 1.47
3135 3214 7.786178 TGAGTCATATATTTTGAAACGGAGG 57.214 36.000 0.00 0.00 0.00 4.30
3136 3215 7.561251 TGAGTCATATATTTTGAAACGGAGGA 58.439 34.615 0.00 0.00 0.00 3.71
3137 3216 8.044309 TGAGTCATATATTTTGAAACGGAGGAA 58.956 33.333 0.00 0.00 0.00 3.36
3138 3217 8.438676 AGTCATATATTTTGAAACGGAGGAAG 57.561 34.615 0.00 0.00 0.00 3.46
3139 3218 8.047310 AGTCATATATTTTGAAACGGAGGAAGT 58.953 33.333 0.00 0.00 0.00 3.01
3140 3219 9.321562 GTCATATATTTTGAAACGGAGGAAGTA 57.678 33.333 0.00 0.00 0.00 2.24
3141 3220 9.542462 TCATATATTTTGAAACGGAGGAAGTAG 57.458 33.333 0.00 0.00 0.00 2.57
3142 3221 9.326413 CATATATTTTGAAACGGAGGAAGTAGT 57.674 33.333 0.00 0.00 0.00 2.73
3143 3222 9.901172 ATATATTTTGAAACGGAGGAAGTAGTT 57.099 29.630 0.00 0.00 0.00 2.24
3144 3223 6.954487 ATTTTGAAACGGAGGAAGTAGTTT 57.046 33.333 0.00 0.00 39.21 2.66
3145 3224 6.762702 TTTTGAAACGGAGGAAGTAGTTTT 57.237 33.333 0.00 0.00 37.00 2.43
3146 3225 5.996669 TTGAAACGGAGGAAGTAGTTTTC 57.003 39.130 0.00 0.00 37.00 2.29
3147 3226 5.026038 TGAAACGGAGGAAGTAGTTTTCA 57.974 39.130 0.00 0.00 37.00 2.69
3148 3227 5.430007 TGAAACGGAGGAAGTAGTTTTCAA 58.570 37.500 0.00 0.00 37.00 2.69
3149 3228 5.526111 TGAAACGGAGGAAGTAGTTTTCAAG 59.474 40.000 0.00 0.00 37.00 3.02
3150 3229 3.400255 ACGGAGGAAGTAGTTTTCAAGC 58.600 45.455 0.00 0.00 0.00 4.01
3151 3230 2.742589 CGGAGGAAGTAGTTTTCAAGCC 59.257 50.000 0.00 0.00 0.00 4.35
3152 3231 3.557264 CGGAGGAAGTAGTTTTCAAGCCT 60.557 47.826 0.00 0.00 0.00 4.58
3153 3232 4.004314 GGAGGAAGTAGTTTTCAAGCCTC 58.996 47.826 0.00 0.00 39.86 4.70
3154 3233 3.665190 AGGAAGTAGTTTTCAAGCCTCG 58.335 45.455 0.00 0.00 0.00 4.63
3155 3234 2.742589 GGAAGTAGTTTTCAAGCCTCGG 59.257 50.000 0.00 0.00 0.00 4.63
3160 3239 2.076863 AGTTTTCAAGCCTCGGAATCG 58.923 47.619 0.00 0.00 37.82 3.34
3161 3240 0.802494 TTTTCAAGCCTCGGAATCGC 59.198 50.000 0.00 0.00 36.13 4.58
3176 3255 3.274288 GAATCGCTTGAGGTCTCCAATT 58.726 45.455 0.00 0.00 0.00 2.32
3243 3325 5.520748 TTTCTTAAGGAGCCCTCTCATTT 57.479 39.130 1.85 0.00 40.04 2.32
3244 3326 4.494091 TCTTAAGGAGCCCTCTCATTTG 57.506 45.455 1.85 0.00 40.04 2.32
3245 3327 2.717639 TAAGGAGCCCTCTCATTTGC 57.282 50.000 0.00 0.00 40.04 3.68
3246 3328 0.393537 AAGGAGCCCTCTCATTTGCG 60.394 55.000 0.00 0.00 40.04 4.85
3392 3484 4.890158 TCTTCAAGGAGTATGCTCACAA 57.110 40.909 13.14 0.00 43.37 3.33
3398 3490 7.994425 TCAAGGAGTATGCTCACAAATTTTA 57.006 32.000 13.14 0.00 43.37 1.52
3446 3539 7.590907 TCTTTAATATGGAATTGGATCACCCA 58.409 34.615 0.00 0.00 44.93 4.51
3579 3672 6.273071 AGTTAACAATTTTGAGCAGGTCAAC 58.727 36.000 14.73 1.10 45.23 3.18
3582 3675 3.569701 ACAATTTTGAGCAGGTCAACGAT 59.430 39.130 14.73 9.16 45.23 3.73
3589 3682 3.449377 TGAGCAGGTCAACGATACCAATA 59.551 43.478 0.00 0.00 39.64 1.90
3614 3707 1.623811 GCAACTTCTCACCACCTAGGA 59.376 52.381 17.98 0.00 41.22 2.94
3619 3712 5.584551 ACTTCTCACCACCTAGGAAAAAT 57.415 39.130 17.98 0.00 41.22 1.82
3624 3717 6.243148 TCTCACCACCTAGGAAAAATAAACC 58.757 40.000 17.98 0.00 41.22 3.27
3661 3770 3.939740 AGTACATGCATCTCCCAACAT 57.060 42.857 0.00 0.00 0.00 2.71
3667 3776 5.452255 ACATGCATCTCCCAACATAGAAAT 58.548 37.500 0.00 0.00 0.00 2.17
3669 3778 6.381994 ACATGCATCTCCCAACATAGAAATTT 59.618 34.615 0.00 0.00 0.00 1.82
3694 3803 8.800231 TTTCGCACATAAATATGGATTGATTG 57.200 30.769 5.48 0.00 38.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.230510 TCAACCTACACATGCAATTCTAAAAGT 59.769 33.333 0.00 0.00 0.00 2.66
1 2 7.592938 TCAACCTACACATGCAATTCTAAAAG 58.407 34.615 0.00 0.00 0.00 2.27
2 3 7.517614 TCAACCTACACATGCAATTCTAAAA 57.482 32.000 0.00 0.00 0.00 1.52
3 4 7.701539 ATCAACCTACACATGCAATTCTAAA 57.298 32.000 0.00 0.00 0.00 1.85
4 5 7.701539 AATCAACCTACACATGCAATTCTAA 57.298 32.000 0.00 0.00 0.00 2.10
5 6 8.978874 ATAATCAACCTACACATGCAATTCTA 57.021 30.769 0.00 0.00 0.00 2.10
6 7 7.886629 ATAATCAACCTACACATGCAATTCT 57.113 32.000 0.00 0.00 0.00 2.40
7 8 8.810427 CAAATAATCAACCTACACATGCAATTC 58.190 33.333 0.00 0.00 0.00 2.17
9 10 8.065473 TCAAATAATCAACCTACACATGCAAT 57.935 30.769 0.00 0.00 0.00 3.56
10 11 7.459795 TCAAATAATCAACCTACACATGCAA 57.540 32.000 0.00 0.00 0.00 4.08
11 12 7.459795 TTCAAATAATCAACCTACACATGCA 57.540 32.000 0.00 0.00 0.00 3.96
12 13 8.810427 CAATTCAAATAATCAACCTACACATGC 58.190 33.333 0.00 0.00 0.00 4.06
13 14 9.859427 ACAATTCAAATAATCAACCTACACATG 57.141 29.630 0.00 0.00 0.00 3.21
14 15 9.859427 CACAATTCAAATAATCAACCTACACAT 57.141 29.630 0.00 0.00 0.00 3.21
15 16 7.812191 GCACAATTCAAATAATCAACCTACACA 59.188 33.333 0.00 0.00 0.00 3.72
16 17 8.028938 AGCACAATTCAAATAATCAACCTACAC 58.971 33.333 0.00 0.00 0.00 2.90
17 18 8.121305 AGCACAATTCAAATAATCAACCTACA 57.879 30.769 0.00 0.00 0.00 2.74
20 21 8.806146 ACTTAGCACAATTCAAATAATCAACCT 58.194 29.630 0.00 0.00 0.00 3.50
21 22 8.986477 ACTTAGCACAATTCAAATAATCAACC 57.014 30.769 0.00 0.00 0.00 3.77
23 24 9.979578 ACAACTTAGCACAATTCAAATAATCAA 57.020 25.926 0.00 0.00 0.00 2.57
24 25 9.979578 AACAACTTAGCACAATTCAAATAATCA 57.020 25.926 0.00 0.00 0.00 2.57
32 33 9.462174 CAGATTTTAACAACTTAGCACAATTCA 57.538 29.630 0.00 0.00 0.00 2.57
33 34 8.427774 GCAGATTTTAACAACTTAGCACAATTC 58.572 33.333 0.00 0.00 0.00 2.17
34 35 7.384932 GGCAGATTTTAACAACTTAGCACAATT 59.615 33.333 0.00 0.00 0.00 2.32
35 36 6.868339 GGCAGATTTTAACAACTTAGCACAAT 59.132 34.615 0.00 0.00 0.00 2.71
36 37 6.183360 TGGCAGATTTTAACAACTTAGCACAA 60.183 34.615 0.00 0.00 0.00 3.33
37 38 5.300539 TGGCAGATTTTAACAACTTAGCACA 59.699 36.000 0.00 0.00 0.00 4.57
38 39 5.768317 TGGCAGATTTTAACAACTTAGCAC 58.232 37.500 0.00 0.00 0.00 4.40
39 40 6.264292 TCTTGGCAGATTTTAACAACTTAGCA 59.736 34.615 0.00 0.00 0.00 3.49
40 41 6.677913 TCTTGGCAGATTTTAACAACTTAGC 58.322 36.000 0.00 0.00 0.00 3.09
54 55 6.872585 TCCCAATTTTAAATCTTGGCAGAT 57.127 33.333 18.24 0.00 42.05 2.90
55 56 6.678568 TTCCCAATTTTAAATCTTGGCAGA 57.321 33.333 18.24 11.69 38.47 4.26
56 57 7.742556 TTTTCCCAATTTTAAATCTTGGCAG 57.257 32.000 18.24 10.19 38.47 4.85
57 58 7.309073 GCATTTTCCCAATTTTAAATCTTGGCA 60.309 33.333 18.24 6.94 38.47 4.92
58 59 7.028962 GCATTTTCCCAATTTTAAATCTTGGC 58.971 34.615 18.24 7.17 38.47 4.52
59 60 8.339344 AGCATTTTCCCAATTTTAAATCTTGG 57.661 30.769 17.30 17.30 39.31 3.61
72 73 9.447157 CCAAATAAAAATCTAGCATTTTCCCAA 57.553 29.630 11.05 0.00 31.53 4.12
73 74 8.601546 ACCAAATAAAAATCTAGCATTTTCCCA 58.398 29.630 11.05 4.13 31.53 4.37
74 75 9.098355 GACCAAATAAAAATCTAGCATTTTCCC 57.902 33.333 11.05 0.00 31.53 3.97
75 76 9.651913 TGACCAAATAAAAATCTAGCATTTTCC 57.348 29.630 11.05 0.00 31.53 3.13
81 82 9.515226 ACTACTTGACCAAATAAAAATCTAGCA 57.485 29.630 0.00 0.00 0.00 3.49
82 83 9.989869 GACTACTTGACCAAATAAAAATCTAGC 57.010 33.333 0.00 0.00 0.00 3.42
91 92 9.832445 GGATGATTAGACTACTTGACCAAATAA 57.168 33.333 0.00 0.00 0.00 1.40
92 93 8.141909 CGGATGATTAGACTACTTGACCAAATA 58.858 37.037 0.00 0.00 0.00 1.40
93 94 6.986817 CGGATGATTAGACTACTTGACCAAAT 59.013 38.462 0.00 0.00 0.00 2.32
94 95 6.338146 CGGATGATTAGACTACTTGACCAAA 58.662 40.000 0.00 0.00 0.00 3.28
95 96 5.681437 GCGGATGATTAGACTACTTGACCAA 60.681 44.000 0.00 0.00 0.00 3.67
96 97 4.202121 GCGGATGATTAGACTACTTGACCA 60.202 45.833 0.00 0.00 0.00 4.02
97 98 4.299978 GCGGATGATTAGACTACTTGACC 58.700 47.826 0.00 0.00 0.00 4.02
98 99 4.038162 AGGCGGATGATTAGACTACTTGAC 59.962 45.833 0.00 0.00 0.00 3.18
99 100 4.215908 AGGCGGATGATTAGACTACTTGA 58.784 43.478 0.00 0.00 0.00 3.02
100 101 4.279671 AGAGGCGGATGATTAGACTACTTG 59.720 45.833 0.00 0.00 0.00 3.16
101 102 4.475345 AGAGGCGGATGATTAGACTACTT 58.525 43.478 0.00 0.00 0.00 2.24
102 103 4.107127 AGAGGCGGATGATTAGACTACT 57.893 45.455 0.00 0.00 0.00 2.57
103 104 5.122711 GTCTAGAGGCGGATGATTAGACTAC 59.877 48.000 0.00 0.00 36.01 2.73
104 105 5.221864 TGTCTAGAGGCGGATGATTAGACTA 60.222 44.000 0.00 0.00 38.39 2.59
105 106 4.076394 GTCTAGAGGCGGATGATTAGACT 58.924 47.826 0.00 0.00 36.01 3.24
106 107 3.821600 TGTCTAGAGGCGGATGATTAGAC 59.178 47.826 0.00 3.24 38.18 2.59
107 108 4.100279 TGTCTAGAGGCGGATGATTAGA 57.900 45.455 0.00 0.00 0.00 2.10
108 109 5.650266 AGTATGTCTAGAGGCGGATGATTAG 59.350 44.000 0.00 0.00 0.00 1.73
109 110 5.571285 AGTATGTCTAGAGGCGGATGATTA 58.429 41.667 0.00 0.00 0.00 1.75
110 111 4.411927 AGTATGTCTAGAGGCGGATGATT 58.588 43.478 0.00 0.00 0.00 2.57
111 112 4.040936 AGTATGTCTAGAGGCGGATGAT 57.959 45.455 0.00 0.00 0.00 2.45
112 113 3.510531 AGTATGTCTAGAGGCGGATGA 57.489 47.619 0.00 0.00 0.00 2.92
113 114 4.551388 GAAAGTATGTCTAGAGGCGGATG 58.449 47.826 0.00 0.00 0.00 3.51
114 115 3.253677 CGAAAGTATGTCTAGAGGCGGAT 59.746 47.826 0.00 0.00 0.00 4.18
115 116 2.617308 CGAAAGTATGTCTAGAGGCGGA 59.383 50.000 0.00 0.00 0.00 5.54
116 117 2.859032 GCGAAAGTATGTCTAGAGGCGG 60.859 54.545 0.00 0.00 0.00 6.13
117 118 2.033550 AGCGAAAGTATGTCTAGAGGCG 59.966 50.000 0.00 0.00 0.00 5.52
118 119 3.551250 GGAGCGAAAGTATGTCTAGAGGC 60.551 52.174 0.00 0.00 0.00 4.70
119 120 3.886505 AGGAGCGAAAGTATGTCTAGAGG 59.113 47.826 0.00 0.00 0.00 3.69
120 121 5.527951 TGTAGGAGCGAAAGTATGTCTAGAG 59.472 44.000 0.00 0.00 0.00 2.43
121 122 5.434408 TGTAGGAGCGAAAGTATGTCTAGA 58.566 41.667 0.00 0.00 0.00 2.43
122 123 5.278071 CCTGTAGGAGCGAAAGTATGTCTAG 60.278 48.000 0.00 0.00 37.39 2.43
123 124 4.579340 CCTGTAGGAGCGAAAGTATGTCTA 59.421 45.833 0.00 0.00 37.39 2.59
124 125 3.381908 CCTGTAGGAGCGAAAGTATGTCT 59.618 47.826 0.00 0.00 37.39 3.41
125 126 3.380637 TCCTGTAGGAGCGAAAGTATGTC 59.619 47.826 0.00 0.00 39.78 3.06
126 127 3.362706 TCCTGTAGGAGCGAAAGTATGT 58.637 45.455 0.00 0.00 39.78 2.29
137 138 3.286679 ACGCATGCGATCCTGTAGGAG 62.287 57.143 43.72 12.83 44.61 3.69
138 139 1.391933 ACGCATGCGATCCTGTAGGA 61.392 55.000 43.72 2.58 45.09 2.94
139 140 0.313987 TACGCATGCGATCCTGTAGG 59.686 55.000 43.72 13.60 42.83 3.18
140 141 2.354109 ATACGCATGCGATCCTGTAG 57.646 50.000 43.72 14.37 42.83 2.74
141 142 3.926821 TTATACGCATGCGATCCTGTA 57.073 42.857 43.72 25.45 42.83 2.74
142 143 2.812358 TTATACGCATGCGATCCTGT 57.188 45.000 43.72 24.10 42.83 4.00
143 144 4.268644 CCTAATTATACGCATGCGATCCTG 59.731 45.833 43.72 23.38 42.83 3.86
144 145 4.159693 TCCTAATTATACGCATGCGATCCT 59.840 41.667 43.72 25.24 42.83 3.24
145 146 4.430007 TCCTAATTATACGCATGCGATCC 58.570 43.478 43.72 1.52 42.83 3.36
146 147 5.748630 TGATCCTAATTATACGCATGCGATC 59.251 40.000 43.72 29.29 42.83 3.69
147 148 5.660460 TGATCCTAATTATACGCATGCGAT 58.340 37.500 43.72 31.31 42.83 4.58
148 149 5.066968 TGATCCTAATTATACGCATGCGA 57.933 39.130 43.72 27.61 42.83 5.10
149 150 5.102313 TCTGATCCTAATTATACGCATGCG 58.898 41.667 36.79 36.79 46.03 4.73
150 151 6.102663 ACTCTGATCCTAATTATACGCATGC 58.897 40.000 7.91 7.91 0.00 4.06
151 152 9.639601 TTAACTCTGATCCTAATTATACGCATG 57.360 33.333 0.00 0.00 0.00 4.06
153 154 9.692749 CTTTAACTCTGATCCTAATTATACGCA 57.307 33.333 0.00 0.00 0.00 5.24
154 155 8.648968 GCTTTAACTCTGATCCTAATTATACGC 58.351 37.037 0.00 0.00 0.00 4.42
155 156 8.851416 CGCTTTAACTCTGATCCTAATTATACG 58.149 37.037 0.00 0.00 0.00 3.06
156 157 9.141400 CCGCTTTAACTCTGATCCTAATTATAC 57.859 37.037 0.00 0.00 0.00 1.47
157 158 8.867097 ACCGCTTTAACTCTGATCCTAATTATA 58.133 33.333 0.00 0.00 0.00 0.98
158 159 7.736893 ACCGCTTTAACTCTGATCCTAATTAT 58.263 34.615 0.00 0.00 0.00 1.28
159 160 7.120923 ACCGCTTTAACTCTGATCCTAATTA 57.879 36.000 0.00 0.00 0.00 1.40
160 161 5.990668 ACCGCTTTAACTCTGATCCTAATT 58.009 37.500 0.00 0.00 0.00 1.40
161 162 5.615925 ACCGCTTTAACTCTGATCCTAAT 57.384 39.130 0.00 0.00 0.00 1.73
162 163 5.163478 GGTACCGCTTTAACTCTGATCCTAA 60.163 44.000 0.00 0.00 0.00 2.69
163 164 4.340381 GGTACCGCTTTAACTCTGATCCTA 59.660 45.833 0.00 0.00 0.00 2.94
164 165 3.132467 GGTACCGCTTTAACTCTGATCCT 59.868 47.826 0.00 0.00 0.00 3.24
165 166 3.455327 GGTACCGCTTTAACTCTGATCC 58.545 50.000 0.00 0.00 0.00 3.36
166 167 3.114065 CGGTACCGCTTTAACTCTGATC 58.886 50.000 23.44 0.00 0.00 2.92
167 168 2.756760 TCGGTACCGCTTTAACTCTGAT 59.243 45.455 29.64 0.00 39.59 2.90
168 169 2.161855 TCGGTACCGCTTTAACTCTGA 58.838 47.619 29.64 4.49 39.59 3.27
169 170 2.642139 TCGGTACCGCTTTAACTCTG 57.358 50.000 29.64 0.00 39.59 3.35
170 171 2.756760 TGATCGGTACCGCTTTAACTCT 59.243 45.455 29.64 4.83 39.59 3.24
171 172 3.155093 TGATCGGTACCGCTTTAACTC 57.845 47.619 29.64 15.41 39.59 3.01
172 173 3.056322 AGTTGATCGGTACCGCTTTAACT 60.056 43.478 29.64 27.82 39.59 2.24
173 174 3.256558 AGTTGATCGGTACCGCTTTAAC 58.743 45.455 29.64 26.35 39.59 2.01
174 175 3.056678 TGAGTTGATCGGTACCGCTTTAA 60.057 43.478 29.64 17.90 39.59 1.52
175 176 2.492881 TGAGTTGATCGGTACCGCTTTA 59.507 45.455 29.64 12.95 39.59 1.85
176 177 1.274167 TGAGTTGATCGGTACCGCTTT 59.726 47.619 29.64 16.15 39.59 3.51
177 178 0.892755 TGAGTTGATCGGTACCGCTT 59.107 50.000 29.64 18.79 39.59 4.68
178 179 1.112113 ATGAGTTGATCGGTACCGCT 58.888 50.000 29.64 21.09 39.59 5.52
179 180 1.209128 CATGAGTTGATCGGTACCGC 58.791 55.000 29.64 16.85 39.59 5.68
180 181 1.209128 GCATGAGTTGATCGGTACCG 58.791 55.000 28.66 28.66 41.35 4.02
181 182 2.309528 TGCATGAGTTGATCGGTACC 57.690 50.000 0.16 0.16 0.00 3.34
182 183 5.984233 TTTATGCATGAGTTGATCGGTAC 57.016 39.130 10.16 0.00 0.00 3.34
183 184 7.566760 AATTTTATGCATGAGTTGATCGGTA 57.433 32.000 10.16 0.00 0.00 4.02
184 185 6.455360 AATTTTATGCATGAGTTGATCGGT 57.545 33.333 10.16 0.00 0.00 4.69
185 186 8.854979 TTTAATTTTATGCATGAGTTGATCGG 57.145 30.769 10.16 0.00 0.00 4.18
192 193 9.807649 GGTCATCTTTTAATTTTATGCATGAGT 57.192 29.630 10.16 0.00 0.00 3.41
193 194 9.252962 GGGTCATCTTTTAATTTTATGCATGAG 57.747 33.333 10.16 0.00 0.00 2.90
194 195 8.756927 TGGGTCATCTTTTAATTTTATGCATGA 58.243 29.630 10.16 0.00 0.00 3.07
195 196 8.819974 GTGGGTCATCTTTTAATTTTATGCATG 58.180 33.333 10.16 0.00 0.00 4.06
196 197 8.761689 AGTGGGTCATCTTTTAATTTTATGCAT 58.238 29.630 3.79 3.79 0.00 3.96
197 198 8.133024 AGTGGGTCATCTTTTAATTTTATGCA 57.867 30.769 0.00 0.00 0.00 3.96
208 209 9.308000 TGAAACATAATTAGTGGGTCATCTTTT 57.692 29.630 0.00 0.00 0.00 2.27
209 210 8.877864 TGAAACATAATTAGTGGGTCATCTTT 57.122 30.769 0.00 0.00 0.00 2.52
210 211 8.877864 TTGAAACATAATTAGTGGGTCATCTT 57.122 30.769 0.00 0.00 0.00 2.40
211 212 8.877864 TTTGAAACATAATTAGTGGGTCATCT 57.122 30.769 0.00 0.00 0.00 2.90
223 224 9.559958 CTGCGTCTTCTAATTTGAAACATAATT 57.440 29.630 3.95 0.00 0.00 1.40
224 225 8.730680 ACTGCGTCTTCTAATTTGAAACATAAT 58.269 29.630 3.95 0.00 0.00 1.28
225 226 8.094798 ACTGCGTCTTCTAATTTGAAACATAA 57.905 30.769 3.95 0.00 0.00 1.90
226 227 7.667043 ACTGCGTCTTCTAATTTGAAACATA 57.333 32.000 3.95 0.00 0.00 2.29
227 228 6.560253 ACTGCGTCTTCTAATTTGAAACAT 57.440 33.333 3.95 0.00 0.00 2.71
228 229 6.371809 AACTGCGTCTTCTAATTTGAAACA 57.628 33.333 3.95 0.60 0.00 2.83
229 230 8.776680 TTTAACTGCGTCTTCTAATTTGAAAC 57.223 30.769 3.95 4.90 0.00 2.78
230 231 9.959749 AATTTAACTGCGTCTTCTAATTTGAAA 57.040 25.926 3.95 0.00 0.00 2.69
231 232 9.393249 CAATTTAACTGCGTCTTCTAATTTGAA 57.607 29.630 2.38 2.38 0.00 2.69
232 233 8.020819 CCAATTTAACTGCGTCTTCTAATTTGA 58.979 33.333 0.00 0.00 0.00 2.69
233 234 7.807907 ACCAATTTAACTGCGTCTTCTAATTTG 59.192 33.333 0.00 0.00 0.00 2.32
234 235 7.882179 ACCAATTTAACTGCGTCTTCTAATTT 58.118 30.769 0.00 0.00 0.00 1.82
235 236 7.448748 ACCAATTTAACTGCGTCTTCTAATT 57.551 32.000 0.00 0.00 0.00 1.40
236 237 6.183360 CGACCAATTTAACTGCGTCTTCTAAT 60.183 38.462 0.00 0.00 0.00 1.73
237 238 5.119588 CGACCAATTTAACTGCGTCTTCTAA 59.880 40.000 0.00 0.00 0.00 2.10
238 239 4.624024 CGACCAATTTAACTGCGTCTTCTA 59.376 41.667 0.00 0.00 0.00 2.10
239 240 3.432252 CGACCAATTTAACTGCGTCTTCT 59.568 43.478 0.00 0.00 0.00 2.85
240 241 3.430895 TCGACCAATTTAACTGCGTCTTC 59.569 43.478 0.00 0.00 0.00 2.87
241 242 3.395639 TCGACCAATTTAACTGCGTCTT 58.604 40.909 0.00 0.00 0.00 3.01
249 250 7.279313 TGCCTTAGTTATCTCGACCAATTTAAC 59.721 37.037 0.00 0.00 0.00 2.01
256 257 3.767673 AGTTGCCTTAGTTATCTCGACCA 59.232 43.478 0.00 0.00 0.00 4.02
281 282 9.617523 ATGCATGATTATCCGTATCATCATTAA 57.382 29.630 0.00 0.00 39.96 1.40
286 287 8.877808 TTCTATGCATGATTATCCGTATCATC 57.122 34.615 10.16 0.00 39.96 2.92
293 294 8.899427 ATCCTAATTCTATGCATGATTATCCG 57.101 34.615 10.16 1.01 0.00 4.18
316 317 7.568315 CGTGATCCTAATTATATGCATGCGATC 60.568 40.741 14.09 14.19 0.00 3.69
320 321 5.504665 GCCGTGATCCTAATTATATGCATGC 60.505 44.000 11.82 11.82 0.00 4.06
322 323 5.994250 AGCCGTGATCCTAATTATATGCAT 58.006 37.500 3.79 3.79 0.00 3.96
342 343 2.596904 TGATCAGTACCGCTTTAGCC 57.403 50.000 0.00 0.00 37.91 3.93
363 364 7.147915 GGGTCACCTTCTAATTTTATGCATGAA 60.148 37.037 10.16 4.23 0.00 2.57
380 381 3.782656 ACGAAATTAGTGGGTCACCTT 57.217 42.857 0.00 0.00 37.76 3.50
397 398 3.655486 TGCGTCTCCTAATTTGAAACGA 58.345 40.909 7.47 0.00 0.00 3.85
512 543 2.014594 CAATCGGACCGCTTTAGCC 58.985 57.895 9.66 0.00 37.91 3.93
514 545 1.299541 ATGCAATCGGACCGCTTTAG 58.700 50.000 9.66 0.00 0.00 1.85
537 568 4.603231 TCCCGTAATTAACAACGATTGC 57.397 40.909 11.82 0.00 41.55 3.56
567 598 8.980143 TTATTCGTTGATTTCCTTCCATTTTC 57.020 30.769 0.00 0.00 0.00 2.29
595 627 4.754114 TGCGAAATTGGCAAAAGCTAAAAT 59.246 33.333 3.01 0.00 37.49 1.82
597 629 3.722147 TGCGAAATTGGCAAAAGCTAAA 58.278 36.364 3.01 0.00 37.49 1.85
600 632 2.237393 TTGCGAAATTGGCAAAAGCT 57.763 40.000 12.82 0.00 46.49 3.74
606 638 0.313672 GACCTGTTGCGAAATTGGCA 59.686 50.000 0.00 0.00 38.93 4.92
608 640 2.791383 TTGACCTGTTGCGAAATTGG 57.209 45.000 0.00 0.00 0.00 3.16
609 641 4.324402 GCTTATTGACCTGTTGCGAAATTG 59.676 41.667 0.00 0.00 0.00 2.32
612 644 2.881513 TGCTTATTGACCTGTTGCGAAA 59.118 40.909 0.00 0.00 0.00 3.46
613 645 2.499197 TGCTTATTGACCTGTTGCGAA 58.501 42.857 0.00 0.00 0.00 4.70
619 651 2.738643 CGGACGATGCTTATTGACCTGT 60.739 50.000 0.00 0.00 0.00 4.00
620 652 1.860950 CGGACGATGCTTATTGACCTG 59.139 52.381 0.00 0.00 0.00 4.00
849 913 4.855715 TCTTCATATCCTCTCGCGAAAT 57.144 40.909 11.33 4.24 0.00 2.17
869 933 1.583054 AGTCGTGGCTTCACTTGTTC 58.417 50.000 0.00 0.00 39.16 3.18
892 956 6.377146 AGACCAAGACTTTGTTTCTGCTAAAA 59.623 34.615 0.00 0.00 32.21 1.52
898 962 4.036852 GGGAAGACCAAGACTTTGTTTCTG 59.963 45.833 0.00 0.00 39.85 3.02
899 963 4.207955 GGGAAGACCAAGACTTTGTTTCT 58.792 43.478 0.00 0.00 39.85 2.52
900 964 3.318275 GGGGAAGACCAAGACTTTGTTTC 59.682 47.826 0.00 1.11 42.91 2.78
905 969 2.753168 GCAAGGGGAAGACCAAGACTTT 60.753 50.000 0.00 0.00 42.91 2.66
913 977 1.377856 GCAGAGCAAGGGGAAGACC 60.378 63.158 0.00 0.00 39.11 3.85
989 1058 2.188994 GCGCCATTGCTCTCCTCT 59.811 61.111 0.00 0.00 34.43 3.69
1206 1275 3.112709 GCGAAGTCTGCGGTGACC 61.113 66.667 1.53 0.00 37.66 4.02
1476 1545 2.770048 AGGCTGAAGGGATCGGGG 60.770 66.667 0.00 0.00 34.76 5.73
2149 2218 4.691216 CGTAGTCCTGTATCGATCATCAGA 59.309 45.833 19.66 4.49 0.00 3.27
2339 2411 1.887854 TCCACGGTCATCACGAAGTTA 59.112 47.619 0.00 0.00 41.61 2.24
2475 2547 4.097361 GGCGACCACCTTCCCCTC 62.097 72.222 0.00 0.00 0.00 4.30
2528 2600 3.984193 CTTGCCCTTGAGGAGCCCG 62.984 68.421 0.00 0.00 38.24 6.13
2555 2627 2.503061 CTCATGGGGACTCCGCTG 59.497 66.667 13.06 8.87 37.37 5.18
2683 2755 1.617947 GCCCAAGAGATCCACGAGGT 61.618 60.000 0.00 0.00 35.89 3.85
2780 2852 0.875908 GCAGAGCGTGACAGTGTTCA 60.876 55.000 0.00 0.00 0.00 3.18
2793 2865 3.326836 AGGTTAGAGTTTCTGCAGAGC 57.673 47.619 17.43 13.77 0.00 4.09
2880 2954 9.710900 AAAAGATTCCACTCCAAATCAAAATAC 57.289 29.630 0.00 0.00 34.91 1.89
2906 2980 5.011125 TCAAAGACAAGTTCCAACCAACAAA 59.989 36.000 0.00 0.00 0.00 2.83
2910 2984 4.952957 TGATCAAAGACAAGTTCCAACCAA 59.047 37.500 0.00 0.00 0.00 3.67
2916 2990 7.672983 TCATAACTGATCAAAGACAAGTTCC 57.327 36.000 0.00 0.00 0.00 3.62
2925 2999 9.994432 GTAGAAACCATTCATAACTGATCAAAG 57.006 33.333 0.00 0.00 38.06 2.77
2962 3036 2.435372 TGGTGACAAACTGAAGGCTT 57.565 45.000 0.00 0.00 37.44 4.35
2976 3050 0.613260 AGCTCTGCGGTTTATGGTGA 59.387 50.000 0.00 0.00 0.00 4.02
2987 3066 1.783031 GCCAATGGATGAGCTCTGCG 61.783 60.000 16.19 0.00 0.00 5.18
3005 3084 2.117941 GACTGTCGGTGGCAAACTGC 62.118 60.000 0.00 0.00 44.08 4.40
3006 3085 0.532862 AGACTGTCGGTGGCAAACTG 60.533 55.000 1.52 0.00 36.38 3.16
3007 3086 0.180406 AAGACTGTCGGTGGCAAACT 59.820 50.000 1.52 0.00 0.00 2.66
3008 3087 0.307760 CAAGACTGTCGGTGGCAAAC 59.692 55.000 1.52 0.00 0.00 2.93
3009 3088 1.444119 GCAAGACTGTCGGTGGCAAA 61.444 55.000 13.87 0.00 0.00 3.68
3060 3139 8.989131 AGGGAGTAGAAAGCATAGTGTAATTAA 58.011 33.333 0.00 0.00 0.00 1.40
3069 3148 2.959707 ACGGAGGGAGTAGAAAGCATAG 59.040 50.000 0.00 0.00 0.00 2.23
3109 3188 8.673711 CCTCCGTTTCAAAATATATGACTCAAA 58.326 33.333 0.00 0.00 0.00 2.69
3110 3189 8.044309 TCCTCCGTTTCAAAATATATGACTCAA 58.956 33.333 0.00 0.00 0.00 3.02
3111 3190 7.561251 TCCTCCGTTTCAAAATATATGACTCA 58.439 34.615 0.00 0.00 0.00 3.41
3112 3191 8.433421 TTCCTCCGTTTCAAAATATATGACTC 57.567 34.615 0.00 0.00 0.00 3.36
3113 3192 8.047310 ACTTCCTCCGTTTCAAAATATATGACT 58.953 33.333 0.00 0.00 0.00 3.41
3114 3193 8.209917 ACTTCCTCCGTTTCAAAATATATGAC 57.790 34.615 0.00 0.00 0.00 3.06
3115 3194 9.542462 CTACTTCCTCCGTTTCAAAATATATGA 57.458 33.333 0.00 0.00 0.00 2.15
3116 3195 9.326413 ACTACTTCCTCCGTTTCAAAATATATG 57.674 33.333 0.00 0.00 0.00 1.78
3117 3196 9.901172 AACTACTTCCTCCGTTTCAAAATATAT 57.099 29.630 0.00 0.00 0.00 0.86
3118 3197 9.729281 AAACTACTTCCTCCGTTTCAAAATATA 57.271 29.630 0.00 0.00 0.00 0.86
3119 3198 8.631480 AAACTACTTCCTCCGTTTCAAAATAT 57.369 30.769 0.00 0.00 0.00 1.28
3120 3199 8.454570 AAAACTACTTCCTCCGTTTCAAAATA 57.545 30.769 0.00 0.00 0.00 1.40
3121 3200 6.954487 AAACTACTTCCTCCGTTTCAAAAT 57.046 33.333 0.00 0.00 0.00 1.82
3122 3201 6.374894 TGAAAACTACTTCCTCCGTTTCAAAA 59.625 34.615 0.00 0.00 0.00 2.44
3123 3202 5.881443 TGAAAACTACTTCCTCCGTTTCAAA 59.119 36.000 0.00 0.00 0.00 2.69
3124 3203 5.430007 TGAAAACTACTTCCTCCGTTTCAA 58.570 37.500 0.00 0.00 0.00 2.69
3125 3204 5.026038 TGAAAACTACTTCCTCCGTTTCA 57.974 39.130 0.00 0.00 0.00 2.69
3126 3205 5.560375 GCTTGAAAACTACTTCCTCCGTTTC 60.560 44.000 0.00 0.00 0.00 2.78
3127 3206 4.275196 GCTTGAAAACTACTTCCTCCGTTT 59.725 41.667 0.00 0.00 0.00 3.60
3128 3207 3.813724 GCTTGAAAACTACTTCCTCCGTT 59.186 43.478 0.00 0.00 0.00 4.44
3129 3208 3.400255 GCTTGAAAACTACTTCCTCCGT 58.600 45.455 0.00 0.00 0.00 4.69
3130 3209 2.742589 GGCTTGAAAACTACTTCCTCCG 59.257 50.000 0.00 0.00 0.00 4.63
3131 3210 4.004314 GAGGCTTGAAAACTACTTCCTCC 58.996 47.826 0.00 0.00 34.36 4.30
3132 3211 3.680458 CGAGGCTTGAAAACTACTTCCTC 59.320 47.826 0.00 0.00 36.43 3.71
3133 3212 3.557264 CCGAGGCTTGAAAACTACTTCCT 60.557 47.826 2.43 0.00 0.00 3.36
3134 3213 2.742589 CCGAGGCTTGAAAACTACTTCC 59.257 50.000 2.43 0.00 0.00 3.46
3135 3214 3.660865 TCCGAGGCTTGAAAACTACTTC 58.339 45.455 2.43 0.00 0.00 3.01
3136 3215 3.764237 TCCGAGGCTTGAAAACTACTT 57.236 42.857 2.43 0.00 0.00 2.24
3137 3216 3.764237 TTCCGAGGCTTGAAAACTACT 57.236 42.857 2.43 0.00 0.00 2.57
3138 3217 3.062234 CGATTCCGAGGCTTGAAAACTAC 59.938 47.826 2.43 0.00 38.22 2.73
3139 3218 3.259064 CGATTCCGAGGCTTGAAAACTA 58.741 45.455 2.43 0.00 38.22 2.24
3140 3219 2.076863 CGATTCCGAGGCTTGAAAACT 58.923 47.619 2.43 0.00 38.22 2.66
3141 3220 1.465856 GCGATTCCGAGGCTTGAAAAC 60.466 52.381 2.43 1.70 38.22 2.43
3142 3221 0.802494 GCGATTCCGAGGCTTGAAAA 59.198 50.000 2.43 0.00 38.22 2.29
3143 3222 0.036388 AGCGATTCCGAGGCTTGAAA 60.036 50.000 2.43 0.00 38.22 2.69
3144 3223 0.036388 AAGCGATTCCGAGGCTTGAA 60.036 50.000 2.43 2.97 44.69 2.69
3145 3224 1.596934 AAGCGATTCCGAGGCTTGA 59.403 52.632 2.43 0.00 44.69 3.02
3146 3225 4.208632 AAGCGATTCCGAGGCTTG 57.791 55.556 0.00 0.00 44.69 4.01
3148 3227 1.142748 CTCAAGCGATTCCGAGGCT 59.857 57.895 0.00 0.00 39.01 4.58
3149 3228 1.884926 CCTCAAGCGATTCCGAGGC 60.885 63.158 6.83 0.00 38.74 4.70
3150 3229 4.427394 CCTCAAGCGATTCCGAGG 57.573 61.111 5.51 5.51 39.20 4.63
3151 3230 0.457851 AGACCTCAAGCGATTCCGAG 59.542 55.000 0.00 0.00 38.22 4.63
3152 3231 0.456221 GAGACCTCAAGCGATTCCGA 59.544 55.000 0.00 0.00 38.22 4.55
3153 3232 0.528684 GGAGACCTCAAGCGATTCCG 60.529 60.000 0.00 0.00 39.16 4.30
3154 3233 0.537188 TGGAGACCTCAAGCGATTCC 59.463 55.000 0.00 0.00 0.00 3.01
3155 3234 2.386661 TTGGAGACCTCAAGCGATTC 57.613 50.000 0.00 0.00 0.00 2.52
3160 3239 4.837972 ACTCTAAATTGGAGACCTCAAGC 58.162 43.478 13.35 0.00 35.10 4.01
3161 3240 6.734104 CAACTCTAAATTGGAGACCTCAAG 57.266 41.667 13.35 0.00 35.10 3.02
3219 3298 4.559862 TGAGAGGGCTCCTTAAGAAAAG 57.440 45.455 3.36 0.00 40.55 2.27
3220 3299 5.520748 AATGAGAGGGCTCCTTAAGAAAA 57.479 39.130 3.36 0.00 40.55 2.29
3221 3300 5.256474 CAAATGAGAGGGCTCCTTAAGAAA 58.744 41.667 3.36 0.00 40.55 2.52
3224 3303 2.948315 GCAAATGAGAGGGCTCCTTAAG 59.052 50.000 0.00 0.00 40.55 1.85
3225 3304 2.680805 CGCAAATGAGAGGGCTCCTTAA 60.681 50.000 0.00 0.00 40.55 1.85
3243 3325 3.692593 GAGCCCTTTAAAATAAGGACGCA 59.307 43.478 4.02 0.00 46.28 5.24
3244 3326 3.692593 TGAGCCCTTTAAAATAAGGACGC 59.307 43.478 4.02 0.60 46.28 5.19
3245 3327 7.562454 TTATGAGCCCTTTAAAATAAGGACG 57.438 36.000 4.02 0.00 46.28 4.79
3290 3382 6.591834 CGGTCAAAATTGAGTGACTCTATCTT 59.408 38.462 14.42 1.85 43.06 2.40
3295 3387 3.403038 CCGGTCAAAATTGAGTGACTCT 58.597 45.455 14.42 0.00 43.06 3.24
3334 3426 8.735692 AAAAGAATGAAATGAGAGAGATCCTC 57.264 34.615 3.70 3.70 42.28 3.71
3480 3573 9.899226 GGAGCATGGTGAATTATAAAGTAAATC 57.101 33.333 0.00 0.00 0.00 2.17
3481 3574 8.860088 GGGAGCATGGTGAATTATAAAGTAAAT 58.140 33.333 0.00 0.00 0.00 1.40
3482 3575 8.058847 AGGGAGCATGGTGAATTATAAAGTAAA 58.941 33.333 0.00 0.00 0.00 2.01
3483 3576 7.582719 AGGGAGCATGGTGAATTATAAAGTAA 58.417 34.615 0.00 0.00 0.00 2.24
3485 3578 6.018433 AGGGAGCATGGTGAATTATAAAGT 57.982 37.500 0.00 0.00 0.00 2.66
3486 3579 8.641498 ATTAGGGAGCATGGTGAATTATAAAG 57.359 34.615 0.00 0.00 0.00 1.85
3487 3580 9.432982 AAATTAGGGAGCATGGTGAATTATAAA 57.567 29.630 0.00 0.00 0.00 1.40
3488 3581 9.432982 AAAATTAGGGAGCATGGTGAATTATAA 57.567 29.630 0.00 0.00 0.00 0.98
3489 3582 8.859090 CAAAATTAGGGAGCATGGTGAATTATA 58.141 33.333 0.00 0.00 0.00 0.98
3491 3584 6.098124 CCAAAATTAGGGAGCATGGTGAATTA 59.902 38.462 0.00 0.00 0.00 1.40
3560 3653 2.948979 TCGTTGACCTGCTCAAAATTGT 59.051 40.909 0.00 0.00 40.73 2.71
3572 3665 3.429822 CGTGGTATTGGTATCGTTGACCT 60.430 47.826 5.08 0.00 37.88 3.85
3579 3672 2.546778 AGTTGCGTGGTATTGGTATCG 58.453 47.619 0.00 0.00 0.00 2.92
3582 3675 3.007074 TGAGAAGTTGCGTGGTATTGGTA 59.993 43.478 0.00 0.00 0.00 3.25
3589 3682 0.814010 GTGGTGAGAAGTTGCGTGGT 60.814 55.000 0.00 0.00 0.00 4.16
3648 3757 6.473455 CGAAAAATTTCTATGTTGGGAGATGC 59.527 38.462 4.54 0.00 35.07 3.91
3651 3760 5.475220 TGCGAAAAATTTCTATGTTGGGAGA 59.525 36.000 4.54 0.00 35.07 3.71
3654 3763 5.226396 TGTGCGAAAAATTTCTATGTTGGG 58.774 37.500 4.54 0.00 35.07 4.12
3655 3764 6.949578 ATGTGCGAAAAATTTCTATGTTGG 57.050 33.333 4.54 0.00 35.07 3.77
3667 3776 9.814899 AATCAATCCATATTTATGTGCGAAAAA 57.185 25.926 0.00 0.00 31.82 1.94
3669 3778 8.412456 ACAATCAATCCATATTTATGTGCGAAA 58.588 29.630 0.00 0.00 31.82 3.46
3694 3803 6.862608 TGCAATGTGATTTTGTGTTATCTGAC 59.137 34.615 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.