AutoCloner

Multiple sequence alignment - TraesCS7D01G435700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G435700	chr7D	100.000	4350	0	0	1	4350	554834236	554838585	0.000000e+00	8034.0
1	TraesCS7D01G435700	chr7D	95.594	817	28	6	3539	4350	84408508	84409321	0.000000e+00	1303.0
2	TraesCS7D01G435700	chr7D	94.654	823	38	6	3533	4350	626224390	626225211	0.000000e+00	1271.0
3	TraesCS7D01G435700	chr7D	79.343	213	42	2	232	444	403557338	403557128	9.750000e-32	148.0
4	TraesCS7D01G435700	chr7D	86.154	65	5	4	591	653	554813653	554813715	2.810000e-07	67.6
5	TraesCS7D01G435700	chr7A	93.379	3474	163	29	27	3482	641052609	641049185	0.000000e+00	5079.0
6	TraesCS7D01G435700	chr7A	85.095	369	38	9	3484	3848	670903803	670904158	1.150000e-95	361.0
7	TraesCS7D01G435700	chr7A	87.500	64	6	2	591	653	641075692	641075630	6.030000e-09	73.1
8	TraesCS7D01G435700	chr7B	92.184	2789	144	29	467	3235	601328286	601325552	0.000000e+00	3875.0
9	TraesCS7D01G435700	chr7B	87.991	433	50	2	37	469	601331230	601330800	1.080000e-140	510.0
10	TraesCS7D01G435700	chr7B	81.313	198	34	2	255	451	412825952	412825757	1.620000e-34	158.0
11	TraesCS7D01G435700	chr7B	87.288	118	10	3	3272	3385	601325552	601325436	3.530000e-26	130.0
12	TraesCS7D01G435700	chr3D	96.691	816	21	4	3539	4350	313296501	313297314	0.000000e+00	1352.0
13	TraesCS7D01G435700	chr3D	85.846	869	82	25	3484	4346	56438917	56439750	0.000000e+00	885.0
14	TraesCS7D01G435700	chr4D	96.446	816	23	4	3539	4350	362483047	362483860	0.000000e+00	1341.0
15	TraesCS7D01G435700	chr5D	95.594	817	28	6	3539	4350	254948028	254947215	0.000000e+00	1303.0
16	TraesCS7D01G435700	chr5D	94.601	815	38	5	3539	4350	238185677	238184866	0.000000e+00	1256.0
17	TraesCS7D01G435700	chr5D	93.925	823	43	7	3533	4350	420971226	420972046	0.000000e+00	1236.0
18	TraesCS7D01G435700	chr2D	95.460	815	31	5	3539	4350	96778825	96779636	0.000000e+00	1295.0
19	TraesCS7D01G435700	chr2D	95.337	815	33	4	3539	4350	76573466	76574278	0.000000e+00	1290.0
20	TraesCS7D01G435700	chr5A	87.327	868	78	20	3484	4346	601209884	601210724	0.000000e+00	965.0
21	TraesCS7D01G435700	chr5A	86.376	367	37	6	3484	3848	601215046	601215401	5.280000e-104	388.0
22	TraesCS7D01G435700	chr6D	76.689	296	66	3	1435	1730	226788131	226787839	1.250000e-35	161.0
23	TraesCS7D01G435700	chr6B	76.761	284	63	3	1435	1718	378960463	378960183	5.820000e-34	156.0
24	TraesCS7D01G435700	chr6B	73.869	398	75	21	162	542	632790434	632790049	9.820000e-27	132.0
25	TraesCS7D01G435700	chr6A	76.761	284	63	3	1435	1718	264831314	264831594	5.820000e-34	156.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G435700	chr7D	554834236	554838585	4349	False	8034	8034	100.000000	1	4350	1	chr7D.!!$F3	4349
1	TraesCS7D01G435700	chr7D	84408508	84409321	813	False	1303	1303	95.594000	3539	4350	1	chr7D.!!$F1	811
2	TraesCS7D01G435700	chr7D	626224390	626225211	821	False	1271	1271	94.654000	3533	4350	1	chr7D.!!$F4	817
3	TraesCS7D01G435700	chr7A	641049185	641052609	3424	True	5079	5079	93.379000	27	3482	1	chr7A.!!$R1	3455
4	TraesCS7D01G435700	chr7B	601325436	601331230	5794	True	1505	3875	89.154333	37	3385	3	chr7B.!!$R2	3348
5	TraesCS7D01G435700	chr3D	313296501	313297314	813	False	1352	1352	96.691000	3539	4350	1	chr3D.!!$F2	811
6	TraesCS7D01G435700	chr3D	56438917	56439750	833	False	885	885	85.846000	3484	4346	1	chr3D.!!$F1	862
7	TraesCS7D01G435700	chr4D	362483047	362483860	813	False	1341	1341	96.446000	3539	4350	1	chr4D.!!$F1	811
8	TraesCS7D01G435700	chr5D	254947215	254948028	813	True	1303	1303	95.594000	3539	4350	1	chr5D.!!$R2	811
9	TraesCS7D01G435700	chr5D	238184866	238185677	811	True	1256	1256	94.601000	3539	4350	1	chr5D.!!$R1	811
10	TraesCS7D01G435700	chr5D	420971226	420972046	820	False	1236	1236	93.925000	3533	4350	1	chr5D.!!$F1	817
11	TraesCS7D01G435700	chr2D	96778825	96779636	811	False	1295	1295	95.460000	3539	4350	1	chr2D.!!$F2	811
12	TraesCS7D01G435700	chr2D	76573466	76574278	812	False	1290	1290	95.337000	3539	4350	1	chr2D.!!$F1	811
13	TraesCS7D01G435700	chr5A	601209884	601210724	840	False	965	965	87.327000	3484	4346	1	chr5A.!!$F1	862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
585	3105	0.036388	TTCATCCTGCGTTCCAGACC	60.036	55.000	0.00	0.0	44.64	3.85	F
883	3403	0.037877	GCCATCCAGCCTGCAGATAT	59.962	55.000	17.39	0.0	0.00	1.63	F
1796	4329	1.065401	AGACGACGACACGTAAAACCA	59.935	47.619	0.00	0.0	46.52	3.67	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2441	4976	1.066257	GCAGTGCAAAGTGGTGTGG	59.934	57.895	11.09	0.0	0.00	4.17	R
2676	5217	0.667487	CGCTGTTCCTTCGCTTCTGA	60.667	55.000	0.00	0.0	0.00	3.27	R
3371	5945	0.180878	TGCAGCGGGATCAATCATGA	59.819	50.000	0.00	0.0	40.57	3.07	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
56	57	3.141767	AGTACAAGAGGAAAAGGCCAC	57.858	47.619	5.01	0.00	0.00	5.01
99	100	2.058057	CCAGCAAAAACAATACCGTGC	58.942	47.619	0.00	0.00	0.00	5.34
132	134	5.970023	GCAGACAAAGAAAGATCATACATGC	59.030	40.000	0.00	0.00	0.00	4.06
183	185	8.804912	TGGAATTTGCCATGCTTTATATTTTT	57.195	26.923	0.00	0.00	31.66	1.94
213	215	9.645059	TTCAAAAACATAAAAATCACACACAGA	57.355	25.926	0.00	0.00	0.00	3.41
325	328	6.813649	GGAAGTAGAAAAGCATTCCCAAAATC	59.186	38.462	0.00	0.00	34.58	2.17
367	370	5.502089	AATTTCCCAAATCTTGCCATCAA	57.498	34.783	0.00	0.00	0.00	2.57
373	376	3.869246	CCAAATCTTGCCATCAAAGCATC	59.131	43.478	0.00	0.00	40.59	3.91
385	388	3.963665	TCAAAGCATCACAAAAAGGACG	58.036	40.909	0.00	0.00	0.00	4.79
409	412	5.505173	AAGTTGTCATGTTTGGAAGACAG	57.495	39.130	0.00	0.00	41.46	3.51
446	449	1.063417	CCATGAGGCCAGGAGGAAAAT	60.063	52.381	5.01	0.00	36.89	1.82
534	3053	3.305064	GCCAGGCGACAAAGTTCAAAATA	60.305	43.478	0.00	0.00	0.00	1.40
583	3103	0.684535	TGTTCATCCTGCGTTCCAGA	59.315	50.000	0.00	0.00	44.64	3.86
584	3104	1.079503	GTTCATCCTGCGTTCCAGAC	58.920	55.000	0.00	0.00	44.64	3.51
585	3105	0.036388	TTCATCCTGCGTTCCAGACC	60.036	55.000	0.00	0.00	44.64	3.85
586	3106	1.191489	TCATCCTGCGTTCCAGACCA	61.191	55.000	0.00	0.00	44.64	4.02
587	3107	0.742281	CATCCTGCGTTCCAGACCAG	60.742	60.000	0.00	0.00	44.64	4.00
665	3185	2.126882	TGTATTACCTCCTGGCTGCAT	58.873	47.619	0.50	0.00	36.63	3.96
841	3361	3.520402	CCGGCCGGCAACAATATT	58.480	55.556	34.96	0.00	0.00	1.28
883	3403	0.037877	GCCATCCAGCCTGCAGATAT	59.962	55.000	17.39	0.00	0.00	1.63
997	3525	3.787001	CTTCCTCCGCCTCCACCC	61.787	72.222	0.00	0.00	0.00	4.61
1153	3681	3.788766	CGCTGCAACGGCTACACC	61.789	66.667	0.45	0.00	41.91	4.16
1564	4092	3.966026	GAAGGTCCGGCTCGACACG	62.966	68.421	0.00	0.00	34.24	4.49
1720	4248	4.100084	TACTCCGACCTCGCCCGA	62.100	66.667	0.00	0.00	38.18	5.14
1796	4329	1.065401	AGACGACGACACGTAAAACCA	59.935	47.619	0.00	0.00	46.52	3.67
1961	4494	1.153745	GTGCTCAAGATCGGCGACT	60.154	57.895	13.76	9.09	0.00	4.18
2406	4941	2.358898	GCGCACAAACCTATCCATCAAT	59.641	45.455	0.30	0.00	0.00	2.57
2407	4942	3.793129	GCGCACAAACCTATCCATCAATG	60.793	47.826	0.30	0.00	0.00	2.82
2440	4975	3.740044	CGGTGTCTAACGCATGAAAAT	57.260	42.857	0.00	0.00	0.00	1.82
2441	4976	3.670203	CGGTGTCTAACGCATGAAAATC	58.330	45.455	0.00	0.00	0.00	2.17
2447	4982	2.723124	AACGCATGAAAATCCACACC	57.277	45.000	0.00	0.00	0.00	4.16
2598	5133	3.678662	GCATGAACGCTTCTTTGATCTC	58.321	45.455	0.00	0.00	0.00	2.75
2614	5155	1.115467	TCTCGCAGAATTCCCTCTCC	58.885	55.000	0.65	0.00	34.09	3.71
2648	5189	1.246056	TTTCTGCTCTGCCACCATGC	61.246	55.000	0.00	0.00	0.00	4.06
2676	5217	4.008933	AAGCCGAGGCAGCGTTCT	62.009	61.111	17.18	0.00	44.88	3.01
2726	5267	4.819761	TGATCGGGAGCAGCACGC	62.820	66.667	0.00	0.00	44.96	5.34
2761	5302	1.139654	TCTCCAATGGCGAATCTCCAG	59.860	52.381	0.00	0.00	36.98	3.86
2847	5388	5.705609	ACGTGAACCAGAATTTTTAGCAT	57.294	34.783	0.00	0.00	0.00	3.79
2872	5413	8.071177	TCTTCATTCATACTCTCATTGACTCA	57.929	34.615	0.00	0.00	0.00	3.41
2954	5499	4.274978	GCCCCTGTGCCTAACTATAAAAA	58.725	43.478	0.00	0.00	0.00	1.94
3109	5678	1.227704	CAACACCTACCACGCCACA	60.228	57.895	0.00	0.00	0.00	4.17
3264	5837	0.748005	ACTGTTGCCGACTTTGCTGT	60.748	50.000	0.00	0.00	0.00	4.40
3293	5866	2.673862	CTGCTGCTGTTCTGATTGAGAG	59.326	50.000	0.00	0.00	30.18	3.20
3296	5869	3.863780	GCTGCTGTTCTGATTGAGAGACA	60.864	47.826	0.00	0.00	30.18	3.41
3352	5926	7.943079	TCAATAAATCTCCATTGCAGAGAAA	57.057	32.000	8.09	0.00	43.35	2.52
3370	5944	7.015001	GCAGAGAAATGGGAGGATTCATTTATT	59.985	37.037	0.00	0.00	41.80	1.40
3371	5945	8.921205	CAGAGAAATGGGAGGATTCATTTATTT	58.079	33.333	0.00	0.00	41.80	1.40
3389	5963	1.311859	TTCATGATTGATCCCGCTGC	58.688	50.000	0.00	0.00	0.00	5.25
3390	5964	0.180878	TCATGATTGATCCCGCTGCA	59.819	50.000	0.00	0.00	0.00	4.41
3414	5988	5.830912	TCTGTTGCTGTTCTATTGTTTTGG	58.169	37.500	0.00	0.00	0.00	3.28
3453	6027	4.002982	TGGAATTTCCGTGAAGATGAGTG	58.997	43.478	10.79	0.00	40.17	3.51
3464	6038	7.670140	TCCGTGAAGATGAGTGTTATCCTATAT	59.330	37.037	0.00	0.00	0.00	0.86
3466	6040	9.698309	CGTGAAGATGAGTGTTATCCTATATTT	57.302	33.333	0.00	0.00	0.00	1.40
3496	6070	8.595362	AATATTCATCCCTGATAGATGTCGTA	57.405	34.615	0.00	0.00	41.56	3.43
3678	6257	1.081648	GGTAGGGGTGTAGGTGGGT	59.918	63.158	0.00	0.00	0.00	4.51
3753	6335	0.547712	ATAGTGCAGGTGACAGGGGT	60.548	55.000	0.00	0.00	0.00	4.95
4015	6599	8.571336	CACACTCCTCTGTTTTGAAATAGATTT	58.429	33.333	3.83	0.00	35.92	2.17
4041	6625	3.790126	ACCTTGGGCCATTTTATTGTCT	58.210	40.909	7.26	0.00	0.00	3.41
4144	6728	5.237127	CAGATCTGCAAACACTTGTCTGTTA	59.763	40.000	10.38	0.00	33.03	2.41
4187	6772	4.956700	TCTACATGATTCCGGACTTTCTCT	59.043	41.667	1.83	0.00	0.00	3.10

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
45	46	6.584185	TTTAGATTTACTGTGGCCTTTTCC	57.416	37.500	3.32	0.00	0.00	3.13
78	79	2.058057	CACGGTATTGTTTTTGCTGGC	58.942	47.619	0.00	0.00	0.00	4.85
82	83	2.287909	TGGAGCACGGTATTGTTTTTGC	60.288	45.455	0.00	0.00	0.00	3.68
99	100	5.835257	TCTTTCTTTGTCTGCATTTTGGAG	58.165	37.500	0.00	0.00	37.15	3.86
158	160	8.675504	CAAAAATATAAAGCATGGCAAATTCCA	58.324	29.630	0.00	0.00	40.97	3.53
298	301	4.589908	TGGGAATGCTTTTCTACTTCCTC	58.410	43.478	0.00	0.00	36.46	3.71
301	304	6.528072	CGATTTTGGGAATGCTTTTCTACTTC	59.472	38.462	0.00	0.00	0.00	3.01
356	359	2.516906	TGTGATGCTTTGATGGCAAGA	58.483	42.857	0.00	0.00	43.14	3.02
367	370	4.578928	ACTTACGTCCTTTTTGTGATGCTT	59.421	37.500	0.00	0.00	0.00	3.91
373	376	5.224562	TGACAACTTACGTCCTTTTTGTG	57.775	39.130	0.00	0.00	32.15	3.33
385	388	6.260050	TCTGTCTTCCAAACATGACAACTTAC	59.740	38.462	0.00	0.00	38.69	2.34
409	412	7.473027	CCTCATGGCAAATTCATAACATTTC	57.527	36.000	0.00	0.00	0.00	2.17
500	3019	3.068873	TGTCGCCTGGCAATTTTAAAACT	59.931	39.130	20.29	0.00	0.00	2.66
501	3020	3.385577	TGTCGCCTGGCAATTTTAAAAC	58.614	40.909	20.29	2.85	0.00	2.43
502	3021	3.735237	TGTCGCCTGGCAATTTTAAAA	57.265	38.095	20.29	2.51	0.00	1.52
534	3053	9.985730	CAAGGATTTGCCATGTACATTTATAAT	57.014	29.630	5.37	4.38	40.02	1.28
583	3103	3.818773	CCCGAGTGTTCAAATTTACTGGT	59.181	43.478	0.00	0.00	0.00	4.00
584	3104	4.069304	TCCCGAGTGTTCAAATTTACTGG	58.931	43.478	0.00	0.00	0.00	4.00
585	3105	4.755123	ACTCCCGAGTGTTCAAATTTACTG	59.245	41.667	0.00	0.00	40.75	2.74
586	3106	4.969484	ACTCCCGAGTGTTCAAATTTACT	58.031	39.130	0.00	0.00	40.75	2.24
587	3107	5.684550	AACTCCCGAGTGTTCAAATTTAC	57.315	39.130	0.00	0.00	41.58	2.01
629	3149	1.908344	TACAAATCTGGCAGCTGCAA	58.092	45.000	37.63	28.31	44.36	4.08
841	3361	5.029807	TGGTAGTGACATTGACAAGAACA	57.970	39.130	0.00	0.00	0.00	3.18
987	3509	3.866582	GAGATGGGGGTGGAGGCG	61.867	72.222	0.00	0.00	0.00	5.52
988	3510	3.866582	CGAGATGGGGGTGGAGGC	61.867	72.222	0.00	0.00	0.00	4.70
997	3525	3.822192	TGCCGACGACGAGATGGG	61.822	66.667	9.28	0.00	42.66	4.00
1117	3645	1.221566	CATGAGGTGGTCGATGCCA	59.778	57.895	0.00	0.00	35.93	4.92
1303	3831	2.179517	GACAGCGACGGTGAGGAG	59.820	66.667	31.66	6.91	34.87	3.69
1564	4092	3.492311	GACGCTCTCCGGCTCCATC	62.492	68.421	0.00	0.00	43.29	3.51
1754	4282	1.822990	CGGCTCCGGTGGTATATATGT	59.177	52.381	0.00	0.00	35.56	2.29
1786	4314	2.870411	GTTCTGCTCTGTGGTTTTACGT	59.130	45.455	0.00	0.00	0.00	3.57
1796	4329	4.518211	CCAAGAAAATGAGTTCTGCTCTGT	59.482	41.667	0.00	0.00	44.41	3.41
2104	4637	1.066587	GGAGAACATCTCGGCGAGG	59.933	63.158	33.93	22.22	44.28	4.63
2306	4839	1.888018	CGAGGAGCGTGGTAAGGAA	59.112	57.895	0.00	0.00	34.64	3.36
2421	4956	3.438781	TGGATTTTCATGCGTTAGACACC	59.561	43.478	0.00	0.00	0.00	4.16
2425	4960	3.438781	GGTGTGGATTTTCATGCGTTAGA	59.561	43.478	0.00	0.00	0.00	2.10
2428	4963	1.959985	TGGTGTGGATTTTCATGCGTT	59.040	42.857	0.00	0.00	0.00	4.84
2433	4968	3.387374	TGCAAAGTGGTGTGGATTTTCAT	59.613	39.130	0.00	0.00	0.00	2.57
2434	4969	2.762887	TGCAAAGTGGTGTGGATTTTCA	59.237	40.909	0.00	0.00	0.00	2.69
2435	4970	3.123050	GTGCAAAGTGGTGTGGATTTTC	58.877	45.455	0.00	0.00	0.00	2.29
2436	4971	2.765699	AGTGCAAAGTGGTGTGGATTTT	59.234	40.909	0.00	0.00	0.00	1.82
2437	4972	2.101249	CAGTGCAAAGTGGTGTGGATTT	59.899	45.455	0.00	0.00	0.00	2.17
2440	4975	1.383456	GCAGTGCAAAGTGGTGTGGA	61.383	55.000	11.09	0.00	0.00	4.02
2441	4976	1.066257	GCAGTGCAAAGTGGTGTGG	59.934	57.895	11.09	0.00	0.00	4.17
2447	4982	2.097954	TGAAGAACTGCAGTGCAAAGTG	59.902	45.455	26.87	9.94	38.41	3.16
2614	5155	2.664916	CAGAAAACCATCAAGCCAACG	58.335	47.619	0.00	0.00	0.00	4.10
2648	5189	1.153823	CTCGGCTTGGACCTGTACG	60.154	63.158	0.00	0.00	0.00	3.67
2676	5217	0.667487	CGCTGTTCCTTCGCTTCTGA	60.667	55.000	0.00	0.00	0.00	3.27
2726	5267	1.014564	GGAGAGCTTTGGTTCGTCGG	61.015	60.000	0.00	0.00	0.00	4.79
2761	5302	5.705441	TGATGTGTACCTCTTTGTTTGGATC	59.295	40.000	0.00	0.00	0.00	3.36
2847	5388	8.071177	TGAGTCAATGAGAGTATGAATGAAGA	57.929	34.615	0.00	0.00	0.00	2.87
2872	5413	0.717224	AATTGTCGTCGCGCGTAAAT	59.283	45.000	30.98	18.67	42.13	1.40
2888	5429	5.339530	CCCTGTTCTCCTCCTACATTCAATT	60.340	44.000	0.00	0.00	0.00	2.32
2889	5430	4.164988	CCCTGTTCTCCTCCTACATTCAAT	59.835	45.833	0.00	0.00	0.00	2.57
2890	5431	3.519510	CCCTGTTCTCCTCCTACATTCAA	59.480	47.826	0.00	0.00	0.00	2.69
2891	5432	3.107601	CCCTGTTCTCCTCCTACATTCA	58.892	50.000	0.00	0.00	0.00	2.57
3144	5713	3.774959	GATCTGATCGCCACGCCGT	62.775	63.158	1.26	0.00	0.00	5.68
3264	5837	1.139654	AGAACAGCAGCAGTTCAGTCA	59.860	47.619	27.06	0.00	45.93	3.41
3293	5866	3.365220	GTCGCAGTCTACAAATCAGTGTC	59.635	47.826	0.00	0.00	32.75	3.67
3296	5869	2.596452	CGTCGCAGTCTACAAATCAGT	58.404	47.619	0.00	0.00	0.00	3.41
3352	5926	8.967779	ATCATGAAATAAATGAATCCTCCCAT	57.032	30.769	0.00	0.00	37.58	4.00
3370	5944	1.311859	GCAGCGGGATCAATCATGAA	58.688	50.000	0.00	0.00	39.49	2.57
3371	5945	0.180878	TGCAGCGGGATCAATCATGA	59.819	50.000	0.00	0.00	40.57	3.07
3389	5963	6.364165	CCAAAACAATAGAACAGCAACAGATG	59.636	38.462	0.00	0.00	0.00	2.90
3390	5964	6.449698	CCAAAACAATAGAACAGCAACAGAT	58.550	36.000	0.00	0.00	0.00	2.90
3401	5975	3.886505	ACGCTGAACCCAAAACAATAGAA	59.113	39.130	0.00	0.00	0.00	2.10
3408	5982	0.741915	TCCAACGCTGAACCCAAAAC	59.258	50.000	0.00	0.00	0.00	2.43
3414	5988	1.611491	TCCATTTTCCAACGCTGAACC	59.389	47.619	0.00	0.00	0.00	3.62
3440	6014	9.698309	AAATATAGGATAACACTCATCTTCACG	57.302	33.333	0.00	0.00	0.00	4.35
3469	6043	8.378565	ACGACATCTATCAGGGATGAATATTTT	58.621	33.333	10.13	0.00	42.02	1.82
3474	6048	6.249192	TCTACGACATCTATCAGGGATGAAT	58.751	40.000	10.13	0.00	42.02	2.57
3477	6051	5.220758	CGATCTACGACATCTATCAGGGATG	60.221	48.000	0.00	0.00	45.77	3.51
3482	6056	5.614923	AACCGATCTACGACATCTATCAG	57.385	43.478	0.00	0.00	45.77	2.90
3490	6064	2.048444	AGCCTAACCGATCTACGACA	57.952	50.000	0.00	0.00	45.77	4.35
3491	6065	2.483491	CCTAGCCTAACCGATCTACGAC	59.517	54.545	0.00	0.00	45.77	4.34
3496	6070	3.166679	GGAATCCTAGCCTAACCGATCT	58.833	50.000	0.00	0.00	0.00	2.75
3567	6144	1.324740	CCATCCACCATGGCCAACAG	61.325	60.000	10.96	3.56	46.18	3.16
4015	6599	6.842676	ACAATAAAATGGCCCAAGGTTAAAA	58.157	32.000	0.00	0.00	0.00	1.52
4187	6772	5.524281	TGACACAGAGTTATGCGTTGTAAAA	59.476	36.000	0.00	0.00	0.00	1.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.