Multiple sequence alignment - TraesCS7D01G434500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G434500 chr7D 100.000 3386 0 0 1 3386 554322941 554319556 0.000000e+00 6253.0
1 TraesCS7D01G434500 chr7D 79.897 1363 237 27 1001 2346 523057019 523055677 0.000000e+00 965.0
2 TraesCS7D01G434500 chr7D 79.601 1353 237 26 1011 2345 523133799 523132468 0.000000e+00 933.0
3 TraesCS7D01G434500 chr7D 79.515 1362 235 29 1001 2346 500773757 500775090 0.000000e+00 929.0
4 TraesCS7D01G434500 chr7D 79.262 1355 222 43 1011 2343 523128130 523126813 0.000000e+00 891.0
5 TraesCS7D01G434500 chr7B 97.858 1027 21 1 1325 2351 600589940 600590965 0.000000e+00 1773.0
6 TraesCS7D01G434500 chr7B 80.044 1363 225 30 1001 2346 528871653 528872985 0.000000e+00 966.0
7 TraesCS7D01G434500 chr7B 80.030 1352 233 25 1011 2345 557491592 557490261 0.000000e+00 966.0
8 TraesCS7D01G434500 chr7B 77.293 1352 250 39 1011 2343 557460615 557459302 0.000000e+00 743.0
9 TraesCS7D01G434500 chr7B 91.585 511 36 6 2881 3386 600594029 600594537 0.000000e+00 699.0
10 TraesCS7D01G434500 chr7B 94.602 352 11 3 980 1330 600589306 600589650 3.840000e-149 538.0
11 TraesCS7D01G434500 chr7B 92.771 332 24 0 179 510 600578651 600578982 6.570000e-132 481.0
12 TraesCS7D01G434500 chr7B 87.755 343 38 3 604 946 600579185 600579523 6.810000e-107 398.0
13 TraesCS7D01G434500 chr7B 90.943 265 20 3 2425 2688 600591234 600591495 1.490000e-93 353.0
14 TraesCS7D01G434500 chr7B 95.620 137 6 0 1 137 600578506 600578642 1.580000e-53 220.0
15 TraesCS7D01G434500 chr7B 100.000 36 0 0 571 606 600579137 600579172 2.180000e-07 67.6
16 TraesCS7D01G434500 chr7A 79.604 1363 241 25 1001 2346 603331660 603330318 0.000000e+00 942.0
17 TraesCS7D01G434500 chr7A 78.928 1362 243 29 1001 2346 566788253 566789586 0.000000e+00 885.0
18 TraesCS7D01G434500 chr7A 78.087 1401 217 66 1001 2346 19960389 19959024 0.000000e+00 804.0
19 TraesCS7D01G434500 chr7A 82.915 199 21 10 3159 3351 110567438 110567629 2.090000e-37 167.0
20 TraesCS7D01G434500 chr2D 78.855 1362 248 26 1011 2346 569121054 569119707 0.000000e+00 883.0
21 TraesCS7D01G434500 chr2D 78.519 1364 249 30 1011 2346 569153493 569152146 0.000000e+00 856.0
22 TraesCS7D01G434500 chr2A 78.467 1370 252 27 1005 2346 708862308 708863662 0.000000e+00 856.0
23 TraesCS7D01G434500 chr2B 78.274 1367 253 29 1011 2346 681943346 681941993 0.000000e+00 839.0
24 TraesCS7D01G434500 chr2B 82.803 314 51 3 602 913 91841240 91841552 9.250000e-71 278.0
25 TraesCS7D01G434500 chr6A 76.874 1401 251 51 1011 2346 496577643 496579035 0.000000e+00 725.0
26 TraesCS7D01G434500 chr5D 78.361 952 157 36 1011 1921 543496377 543497320 3.790000e-159 571.0
27 TraesCS7D01G434500 chr5D 82.941 340 56 2 2008 2346 543497458 543497796 4.240000e-79 305.0
28 TraesCS7D01G434500 chr1A 80.000 460 71 12 469 909 568033728 568033271 1.520000e-83 320.0
29 TraesCS7D01G434500 chr1A 82.540 126 19 3 785 909 568042092 568041969 1.280000e-19 108.0
30 TraesCS7D01G434500 chr5B 83.529 340 54 2 2008 2346 685528642 685528304 1.960000e-82 316.0
31 TraesCS7D01G434500 chr5B 78.125 448 70 22 487 912 678057746 678057305 3.350000e-65 259.0
32 TraesCS7D01G434500 chr3B 79.644 393 55 18 469 841 42139140 42138753 3.350000e-65 259.0
33 TraesCS7D01G434500 chr3D 83.984 256 39 2 607 862 306079055 306079308 9.390000e-61 244.0
34 TraesCS7D01G434500 chr1B 88.827 179 20 0 607 785 596037958 596038136 1.580000e-53 220.0
35 TraesCS7D01G434500 chr1B 85.859 99 14 0 664 762 626809451 626809549 4.620000e-19 106.0
36 TraesCS7D01G434500 chr4B 83.412 211 28 6 3152 3357 86473894 86474102 4.460000e-44 189.0
37 TraesCS7D01G434500 chr4B 76.214 206 38 11 3177 3376 34729702 34729502 7.730000e-17 99.0
38 TraesCS7D01G434500 chr4A 80.982 163 21 9 3177 3334 579425796 579425953 1.650000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G434500 chr7D 554319556 554322941 3385 True 6253.00 6253 100.0000 1 3386 1 chr7D.!!$R4 3385
1 TraesCS7D01G434500 chr7D 523055677 523057019 1342 True 965.00 965 79.8970 1001 2346 1 chr7D.!!$R1 1345
2 TraesCS7D01G434500 chr7D 523132468 523133799 1331 True 933.00 933 79.6010 1011 2345 1 chr7D.!!$R3 1334
3 TraesCS7D01G434500 chr7D 500773757 500775090 1333 False 929.00 929 79.5150 1001 2346 1 chr7D.!!$F1 1345
4 TraesCS7D01G434500 chr7D 523126813 523128130 1317 True 891.00 891 79.2620 1011 2343 1 chr7D.!!$R2 1332
5 TraesCS7D01G434500 chr7B 528871653 528872985 1332 False 966.00 966 80.0440 1001 2346 1 chr7B.!!$F1 1345
6 TraesCS7D01G434500 chr7B 557490261 557491592 1331 True 966.00 966 80.0300 1011 2345 1 chr7B.!!$R2 1334
7 TraesCS7D01G434500 chr7B 600589306 600594537 5231 False 840.75 1773 93.7470 980 3386 4 chr7B.!!$F3 2406
8 TraesCS7D01G434500 chr7B 557459302 557460615 1313 True 743.00 743 77.2930 1011 2343 1 chr7B.!!$R1 1332
9 TraesCS7D01G434500 chr7B 600578506 600579523 1017 False 291.65 481 94.0365 1 946 4 chr7B.!!$F2 945
10 TraesCS7D01G434500 chr7A 603330318 603331660 1342 True 942.00 942 79.6040 1001 2346 1 chr7A.!!$R2 1345
11 TraesCS7D01G434500 chr7A 566788253 566789586 1333 False 885.00 885 78.9280 1001 2346 1 chr7A.!!$F2 1345
12 TraesCS7D01G434500 chr7A 19959024 19960389 1365 True 804.00 804 78.0870 1001 2346 1 chr7A.!!$R1 1345
13 TraesCS7D01G434500 chr2D 569119707 569121054 1347 True 883.00 883 78.8550 1011 2346 1 chr2D.!!$R1 1335
14 TraesCS7D01G434500 chr2D 569152146 569153493 1347 True 856.00 856 78.5190 1011 2346 1 chr2D.!!$R2 1335
15 TraesCS7D01G434500 chr2A 708862308 708863662 1354 False 856.00 856 78.4670 1005 2346 1 chr2A.!!$F1 1341
16 TraesCS7D01G434500 chr2B 681941993 681943346 1353 True 839.00 839 78.2740 1011 2346 1 chr2B.!!$R1 1335
17 TraesCS7D01G434500 chr6A 496577643 496579035 1392 False 725.00 725 76.8740 1011 2346 1 chr6A.!!$F1 1335
18 TraesCS7D01G434500 chr5D 543496377 543497796 1419 False 438.00 571 80.6510 1011 2346 2 chr5D.!!$F1 1335

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
405 406 0.030638 AACTTGGTCGCATGTGCAAC 59.969 50.0 0.0 0.0 42.21 4.17 F
789 927 0.033228 TTCATGCAAAAACCGGCCAG 59.967 50.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2347 2937 0.750850 TAGGACATAAGCTCACGGGC 59.249 55.000 0.0 0.0 0.0 6.13 R
2775 6064 2.026641 CCAGTGGGCATAAACCTGATG 58.973 52.381 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.796606 TGATCCCATCTTCAAATCCCTTC 58.203 43.478 0.00 0.00 0.00 3.46
52 53 2.092429 GCCAGGGATGAACTCCACATTA 60.092 50.000 0.00 0.00 46.98 1.90
59 60 4.276926 GGATGAACTCCACATTAGAATGGC 59.723 45.833 7.16 0.00 44.26 4.40
108 109 4.764172 AGTTATCCACAAAGCTAGCTGAG 58.236 43.478 20.16 16.19 0.00 3.35
110 111 3.710209 ATCCACAAAGCTAGCTGAGTT 57.290 42.857 20.16 6.12 0.00 3.01
140 141 8.910351 ATAGACTTTTTCTCTTAGCAAAGTGT 57.090 30.769 1.00 0.40 39.13 3.55
142 143 8.910351 AGACTTTTTCTCTTAGCAAAGTGTAT 57.090 30.769 1.00 0.00 39.13 2.29
144 145 9.952188 GACTTTTTCTCTTAGCAAAGTGTATTT 57.048 29.630 1.00 0.00 39.13 1.40
190 191 8.421784 AGTAAATAGAAGGAATATCGCAAGTGA 58.578 33.333 0.00 0.00 39.48 3.41
197 198 3.001736 GGAATATCGCAAGTGACAAGCTC 59.998 47.826 0.00 0.00 39.48 4.09
228 229 7.672983 ACATGAAGTAAGATTTACACACTGG 57.327 36.000 0.00 0.30 0.00 4.00
231 232 8.607459 CATGAAGTAAGATTTACACACTGGATC 58.393 37.037 0.00 0.00 0.00 3.36
241 242 2.289444 ACACACTGGATCGGTTAACTGG 60.289 50.000 14.44 2.93 0.00 4.00
255 256 6.070424 TCGGTTAACTGGTCCAAGAAGATAAT 60.070 38.462 14.44 0.00 0.00 1.28
309 310 1.967319 TCCCTCGGCATAAATGAAGC 58.033 50.000 0.00 0.00 0.00 3.86
339 340 2.552743 GTTTGCTTAGGTGGTCAACTCC 59.447 50.000 0.00 0.00 0.00 3.85
348 349 0.318441 TGGTCAACTCCTCAGCGAAG 59.682 55.000 0.00 0.00 0.00 3.79
352 353 1.000163 TCAACTCCTCAGCGAAGACAC 60.000 52.381 0.00 0.00 0.00 3.67
357 358 1.610038 TCCTCAGCGAAGACACGTTAA 59.390 47.619 0.00 0.00 35.59 2.01
375 376 5.735892 ACGTTAAAAGAAAAACTTCAGCGAC 59.264 36.000 0.00 0.00 37.93 5.19
405 406 0.030638 AACTTGGTCGCATGTGCAAC 59.969 50.000 0.00 0.00 42.21 4.17
413 414 1.226379 GCATGTGCAACGGGAATCG 60.226 57.895 0.00 0.00 42.39 3.34
478 479 5.710567 ACCCTTCTAGGCATAAAAACTGAAC 59.289 40.000 0.00 0.00 32.73 3.18
479 480 5.125578 CCCTTCTAGGCATAAAAACTGAACC 59.874 44.000 0.00 0.00 32.73 3.62
492 493 1.069513 ACTGAACCGGTGATCGAACAA 59.930 47.619 8.52 0.00 42.43 2.83
514 515 4.699522 GGCCGCCGGTTCAGTCTT 62.700 66.667 4.45 0.00 0.00 3.01
515 516 2.668550 GCCGCCGGTTCAGTCTTT 60.669 61.111 4.45 0.00 0.00 2.52
516 517 2.258726 GCCGCCGGTTCAGTCTTTT 61.259 57.895 4.45 0.00 0.00 2.27
517 518 0.952010 GCCGCCGGTTCAGTCTTTTA 60.952 55.000 4.45 0.00 0.00 1.52
518 519 0.794473 CCGCCGGTTCAGTCTTTTAC 59.206 55.000 1.90 0.00 0.00 2.01
519 520 0.794473 CGCCGGTTCAGTCTTTTACC 59.206 55.000 1.90 0.00 0.00 2.85
524 525 2.148768 GGTTCAGTCTTTTACCGGTGG 58.851 52.381 19.93 4.81 0.00 4.61
525 526 2.148768 GTTCAGTCTTTTACCGGTGGG 58.851 52.381 19.93 4.42 40.11 4.61
526 527 1.719529 TCAGTCTTTTACCGGTGGGA 58.280 50.000 19.93 6.94 36.97 4.37
527 528 1.345415 TCAGTCTTTTACCGGTGGGAC 59.655 52.381 19.93 18.21 36.97 4.46
528 529 0.689055 AGTCTTTTACCGGTGGGACC 59.311 55.000 19.93 0.18 36.97 4.46
529 530 0.689055 GTCTTTTACCGGTGGGACCT 59.311 55.000 19.93 0.00 35.66 3.85
530 531 0.978907 TCTTTTACCGGTGGGACCTC 59.021 55.000 19.93 0.00 35.66 3.85
531 532 0.035725 CTTTTACCGGTGGGACCTCC 60.036 60.000 19.93 0.00 35.66 4.30
536 537 2.681064 CGGTGGGACCTCCGGTTA 60.681 66.667 20.87 0.00 45.77 2.85
537 538 2.285024 CGGTGGGACCTCCGGTTAA 61.285 63.158 20.87 0.00 45.77 2.01
550 551 2.156542 GGTTAACCGGTTCGCTGTC 58.843 57.895 26.16 8.73 0.00 3.51
553 554 0.390124 TTAACCGGTTCGCTGTCTGT 59.610 50.000 26.16 0.00 0.00 3.41
554 555 0.390124 TAACCGGTTCGCTGTCTGTT 59.610 50.000 26.16 0.00 0.00 3.16
668 806 0.317160 GGGCCAAAGGTGCAACTTAC 59.683 55.000 19.31 10.42 36.74 2.34
689 827 5.003692 ACGCACCTATATCTAGCATCATG 57.996 43.478 0.00 0.00 0.00 3.07
712 850 3.306019 GGTTTGAATTCCCTTTGACGCAT 60.306 43.478 2.27 0.00 0.00 4.73
714 852 1.202114 TGAATTCCCTTTGACGCATGC 59.798 47.619 7.91 7.91 0.00 4.06
715 853 1.474077 GAATTCCCTTTGACGCATGCT 59.526 47.619 17.13 2.38 0.00 3.79
725 863 6.321717 CCTTTGACGCATGCTATTTTTCTAA 58.678 36.000 17.13 4.94 0.00 2.10
735 873 8.711457 GCATGCTATTTTTCTAATTTTGTGTGT 58.289 29.630 11.37 0.00 0.00 3.72
751 889 1.092921 GTGTGGCACTCGTTCAACCA 61.093 55.000 19.83 0.00 0.00 3.67
766 904 5.220529 CGTTCAACCACCGGTTTTATATCTC 60.221 44.000 2.97 0.00 44.33 2.75
768 906 4.225492 TCAACCACCGGTTTTATATCTCCA 59.775 41.667 2.97 0.00 44.33 3.86
772 910 4.814771 CCACCGGTTTTATATCTCCAGTTC 59.185 45.833 2.97 0.00 0.00 3.01
788 926 0.249657 GTTCATGCAAAAACCGGCCA 60.250 50.000 0.00 0.00 0.00 5.36
789 927 0.033228 TTCATGCAAAAACCGGCCAG 59.967 50.000 0.00 0.00 0.00 4.85
791 929 0.667184 CATGCAAAAACCGGCCAGTC 60.667 55.000 0.00 0.00 0.00 3.51
797 935 3.340034 CAAAAACCGGCCAGTCTACATA 58.660 45.455 0.00 0.00 0.00 2.29
799 937 3.926058 AAACCGGCCAGTCTACATAAT 57.074 42.857 0.00 0.00 0.00 1.28
821 959 3.810310 TTTTCGGTCAATTTGCAGGTT 57.190 38.095 0.00 0.00 0.00 3.50
836 974 4.465886 TGCAGGTTGGTCTTTTTAGCTTA 58.534 39.130 0.00 0.00 0.00 3.09
837 975 4.890581 TGCAGGTTGGTCTTTTTAGCTTAA 59.109 37.500 0.00 0.00 0.00 1.85
855 993 2.282827 AAAAACCAATAGGGGCGCC 58.717 52.632 21.18 21.18 42.91 6.53
888 1026 1.482748 TTAGGTCCAACCACCGGTCC 61.483 60.000 2.59 0.00 41.95 4.46
946 1084 7.677276 GCAAAATATGATACGAAAGCACTGAGT 60.677 37.037 0.00 0.00 0.00 3.41
947 1085 7.849804 AAATATGATACGAAAGCACTGAGTT 57.150 32.000 0.00 0.00 0.00 3.01
948 1086 6.834959 ATATGATACGAAAGCACTGAGTTG 57.165 37.500 0.00 0.00 0.00 3.16
949 1087 2.736721 TGATACGAAAGCACTGAGTTGC 59.263 45.455 0.00 0.00 43.34 4.17
950 1088 1.508632 TACGAAAGCACTGAGTTGCC 58.491 50.000 0.00 0.00 44.14 4.52
951 1089 0.463654 ACGAAAGCACTGAGTTGCCA 60.464 50.000 0.00 0.00 44.14 4.92
952 1090 0.877071 CGAAAGCACTGAGTTGCCAT 59.123 50.000 3.93 0.00 44.14 4.40
953 1091 1.135859 CGAAAGCACTGAGTTGCCATC 60.136 52.381 3.93 2.90 44.14 3.51
954 1092 1.881973 GAAAGCACTGAGTTGCCATCA 59.118 47.619 3.93 0.00 44.14 3.07
955 1093 1.985473 AAGCACTGAGTTGCCATCAA 58.015 45.000 3.93 0.00 44.14 2.57
956 1094 2.211250 AGCACTGAGTTGCCATCAAT 57.789 45.000 3.93 0.00 44.14 2.57
957 1095 3.354948 AGCACTGAGTTGCCATCAATA 57.645 42.857 3.93 0.00 44.14 1.90
958 1096 3.012518 AGCACTGAGTTGCCATCAATAC 58.987 45.455 3.93 0.00 44.14 1.89
959 1097 2.098117 GCACTGAGTTGCCATCAATACC 59.902 50.000 0.00 0.00 36.42 2.73
960 1098 2.352651 CACTGAGTTGCCATCAATACCG 59.647 50.000 0.00 0.00 34.29 4.02
961 1099 1.331756 CTGAGTTGCCATCAATACCGC 59.668 52.381 0.00 0.00 34.29 5.68
962 1100 1.065491 TGAGTTGCCATCAATACCGCT 60.065 47.619 0.00 0.00 34.29 5.52
963 1101 1.599542 GAGTTGCCATCAATACCGCTC 59.400 52.381 0.00 0.00 34.29 5.03
964 1102 0.663153 GTTGCCATCAATACCGCTCC 59.337 55.000 0.00 0.00 34.29 4.70
965 1103 0.465460 TTGCCATCAATACCGCTCCC 60.465 55.000 0.00 0.00 0.00 4.30
966 1104 1.344953 TGCCATCAATACCGCTCCCT 61.345 55.000 0.00 0.00 0.00 4.20
967 1105 0.179018 GCCATCAATACCGCTCCCTT 60.179 55.000 0.00 0.00 0.00 3.95
968 1106 1.750682 GCCATCAATACCGCTCCCTTT 60.751 52.381 0.00 0.00 0.00 3.11
969 1107 1.949525 CCATCAATACCGCTCCCTTTG 59.050 52.381 0.00 0.00 0.00 2.77
970 1108 2.643551 CATCAATACCGCTCCCTTTGT 58.356 47.619 0.00 0.00 0.00 2.83
971 1109 2.871096 TCAATACCGCTCCCTTTGTT 57.129 45.000 0.00 0.00 0.00 2.83
972 1110 2.432444 TCAATACCGCTCCCTTTGTTG 58.568 47.619 0.00 0.00 0.00 3.33
973 1111 1.472480 CAATACCGCTCCCTTTGTTGG 59.528 52.381 0.00 0.00 0.00 3.77
974 1112 0.988832 ATACCGCTCCCTTTGTTGGA 59.011 50.000 0.00 0.00 0.00 3.53
980 1118 2.409948 CTCCCTTTGTTGGAGCCTAG 57.590 55.000 0.00 0.00 42.75 3.02
981 1119 0.328258 TCCCTTTGTTGGAGCCTAGC 59.672 55.000 0.00 0.00 0.00 3.42
982 1120 0.329596 CCCTTTGTTGGAGCCTAGCT 59.670 55.000 0.00 0.00 43.88 3.32
983 1121 1.559682 CCCTTTGTTGGAGCCTAGCTA 59.440 52.381 0.00 0.00 39.88 3.32
984 1122 2.420687 CCCTTTGTTGGAGCCTAGCTAG 60.421 54.545 14.20 14.20 39.88 3.42
985 1123 2.284190 CTTTGTTGGAGCCTAGCTAGC 58.716 52.381 15.74 6.62 39.88 3.42
986 1124 0.175760 TTGTTGGAGCCTAGCTAGCG 59.824 55.000 15.74 9.76 39.88 4.26
987 1125 0.970937 TGTTGGAGCCTAGCTAGCGT 60.971 55.000 15.74 3.94 39.88 5.07
988 1126 0.249114 GTTGGAGCCTAGCTAGCGTC 60.249 60.000 15.74 12.77 39.88 5.19
1301 1483 0.656259 CTACTGTCGCTTCGATCCGA 59.344 55.000 4.10 4.10 38.42 4.55
1318 1518 4.467084 ATTCCGATGCACCGCCGT 62.467 61.111 0.00 0.00 0.00 5.68
1323 1786 2.742372 GATGCACCGCCGTTGACT 60.742 61.111 0.00 0.00 0.00 3.41
1445 1908 2.025418 CGTACCTGTCCGTGCCAAC 61.025 63.158 0.00 0.00 0.00 3.77
1764 2296 2.418910 CCTGTGGAGCGAGGACGAT 61.419 63.158 0.00 0.00 42.66 3.73
1824 2356 1.542915 GTTGTGTACGTGAGCCTAGGA 59.457 52.381 14.75 0.00 0.00 2.94
1923 2455 4.838152 CTCCGGCCGGACATGGTG 62.838 72.222 42.66 27.49 39.76 4.17
2046 2632 2.045926 GGGTGCTTCCTGACGCAT 60.046 61.111 1.48 0.00 38.56 4.73
2106 2692 4.720902 CCGATGGTGTGCTGGCCA 62.721 66.667 4.71 4.71 39.33 5.36
2164 2753 2.677524 CGGTGTGGAGGACGGGTA 60.678 66.667 0.00 0.00 0.00 3.69
2185 2774 1.144708 TGGACATGAAGGACCTTTGCA 59.855 47.619 8.49 2.93 0.00 4.08
2200 2789 0.958382 TTGCAACAGGGCCATCGTAC 60.958 55.000 6.18 0.00 0.00 3.67
2244 2833 4.742649 TCCGGCGAGCTCAGAGGT 62.743 66.667 15.40 0.40 0.00 3.85
2347 2937 1.202557 GCTTCATCAGGGAGCTCAGAG 60.203 57.143 17.19 4.05 0.00 3.35
2350 2940 1.765657 ATCAGGGAGCTCAGAGCCC 60.766 63.158 19.40 18.29 43.77 5.19
2351 2941 3.847602 CAGGGAGCTCAGAGCCCG 61.848 72.222 19.40 6.92 46.68 6.13
2352 2942 4.390556 AGGGAGCTCAGAGCCCGT 62.391 66.667 19.40 17.09 46.68 5.28
2353 2943 4.154347 GGGAGCTCAGAGCCCGTG 62.154 72.222 19.40 0.00 43.77 4.94
2355 2945 2.493973 GAGCTCAGAGCCCGTGAG 59.506 66.667 19.40 0.01 43.77 3.51
2358 2948 2.977178 CTCAGAGCCCGTGAGCTT 59.023 61.111 0.00 0.00 45.15 3.74
2359 2949 2.193532 CTCAGAGCCCGTGAGCTTA 58.806 57.895 0.00 0.00 45.15 3.09
2360 2950 0.749649 CTCAGAGCCCGTGAGCTTAT 59.250 55.000 0.00 0.00 45.15 1.73
2476 3260 6.718454 ACTTTTTCTCCATCATCATGACAACT 59.282 34.615 0.00 0.00 30.57 3.16
2477 3261 7.232127 ACTTTTTCTCCATCATCATGACAACTT 59.768 33.333 0.00 0.00 30.57 2.66
2482 3266 6.151648 TCTCCATCATCATGACAACTTTTTCC 59.848 38.462 0.00 0.00 30.57 3.13
2498 3282 8.579863 CAACTTTTTCCTCATATTCCTGAAACT 58.420 33.333 0.00 0.00 0.00 2.66
2499 3283 8.712228 ACTTTTTCCTCATATTCCTGAAACTT 57.288 30.769 0.00 0.00 0.00 2.66
2500 3284 8.797438 ACTTTTTCCTCATATTCCTGAAACTTC 58.203 33.333 0.00 0.00 0.00 3.01
2508 3292 6.900186 TCATATTCCTGAAACTTCTCTCCTCT 59.100 38.462 0.00 0.00 0.00 3.69
2509 3293 8.061920 TCATATTCCTGAAACTTCTCTCCTCTA 58.938 37.037 0.00 0.00 0.00 2.43
2544 3328 5.560724 AGTGCACACAATAATACTTCACCT 58.439 37.500 21.04 0.00 0.00 4.00
2553 3337 3.737559 AATACTTCACCTTCCCATGCA 57.262 42.857 0.00 0.00 0.00 3.96
2556 3340 2.893424 ACTTCACCTTCCCATGCATTT 58.107 42.857 0.00 0.00 0.00 2.32
2571 3355 6.183360 CCCATGCATTTTTCACATGATTTCAG 60.183 38.462 0.00 0.00 43.04 3.02
2640 3424 8.089597 TGATATGTTTGCATCTTTGTGTTTCAT 58.910 29.630 0.00 0.00 36.58 2.57
2659 3443 3.616956 ATGCAATGAGGACTTCGAGAA 57.383 42.857 0.00 0.00 0.00 2.87
2662 3446 3.748048 TGCAATGAGGACTTCGAGAAAAG 59.252 43.478 0.00 0.00 0.00 2.27
2667 3451 3.578716 TGAGGACTTCGAGAAAAGACCAT 59.421 43.478 6.21 0.00 41.63 3.55
2672 3456 5.915196 GGACTTCGAGAAAAGACCATTTTTG 59.085 40.000 0.00 0.00 39.78 2.44
2673 3457 6.238648 GGACTTCGAGAAAAGACCATTTTTGA 60.239 38.462 0.00 0.00 39.78 2.69
2675 3459 7.716612 ACTTCGAGAAAAGACCATTTTTGAAT 58.283 30.769 0.00 0.00 30.78 2.57
2676 3460 8.846211 ACTTCGAGAAAAGACCATTTTTGAATA 58.154 29.630 0.00 0.00 30.78 1.75
2677 3461 9.846248 CTTCGAGAAAAGACCATTTTTGAATAT 57.154 29.630 0.00 0.00 30.78 1.28
2732 6021 9.793259 AATTCTAAACTCTATGAAACACAAGGA 57.207 29.630 0.00 0.00 0.00 3.36
2733 6022 9.793259 ATTCTAAACTCTATGAAACACAAGGAA 57.207 29.630 0.00 0.00 0.00 3.36
2734 6023 8.833231 TCTAAACTCTATGAAACACAAGGAAG 57.167 34.615 0.00 0.00 0.00 3.46
2735 6024 5.948992 AACTCTATGAAACACAAGGAAGC 57.051 39.130 0.00 0.00 0.00 3.86
2736 6025 3.997021 ACTCTATGAAACACAAGGAAGCG 59.003 43.478 0.00 0.00 0.00 4.68
2737 6026 3.997021 CTCTATGAAACACAAGGAAGCGT 59.003 43.478 0.00 0.00 0.00 5.07
2738 6027 5.142061 TCTATGAAACACAAGGAAGCGTA 57.858 39.130 0.00 0.00 0.00 4.42
2739 6028 5.730550 TCTATGAAACACAAGGAAGCGTAT 58.269 37.500 0.00 0.00 0.00 3.06
2740 6029 6.869695 TCTATGAAACACAAGGAAGCGTATA 58.130 36.000 0.00 0.00 0.00 1.47
2741 6030 7.497595 TCTATGAAACACAAGGAAGCGTATAT 58.502 34.615 0.00 0.00 0.00 0.86
2742 6031 7.985184 TCTATGAAACACAAGGAAGCGTATATT 59.015 33.333 0.00 0.00 0.00 1.28
2743 6032 9.256477 CTATGAAACACAAGGAAGCGTATATTA 57.744 33.333 0.00 0.00 0.00 0.98
2744 6033 7.908827 TGAAACACAAGGAAGCGTATATTAA 57.091 32.000 0.00 0.00 0.00 1.40
2745 6034 8.500753 TGAAACACAAGGAAGCGTATATTAAT 57.499 30.769 0.00 0.00 0.00 1.40
2746 6035 8.952278 TGAAACACAAGGAAGCGTATATTAATT 58.048 29.630 0.00 0.00 0.00 1.40
2747 6036 9.783256 GAAACACAAGGAAGCGTATATTAATTT 57.217 29.630 0.00 0.00 0.00 1.82
2750 6039 9.783256 ACACAAGGAAGCGTATATTAATTTTTC 57.217 29.630 0.00 0.00 0.00 2.29
2751 6040 9.781834 CACAAGGAAGCGTATATTAATTTTTCA 57.218 29.630 0.00 0.00 0.00 2.69
2752 6041 9.783256 ACAAGGAAGCGTATATTAATTTTTCAC 57.217 29.630 0.00 0.00 0.00 3.18
2753 6042 9.233232 CAAGGAAGCGTATATTAATTTTTCACC 57.767 33.333 0.00 0.00 0.00 4.02
2754 6043 8.514330 AGGAAGCGTATATTAATTTTTCACCA 57.486 30.769 0.00 0.00 0.00 4.17
2755 6044 8.962679 AGGAAGCGTATATTAATTTTTCACCAA 58.037 29.630 0.00 0.00 0.00 3.67
2756 6045 9.233232 GGAAGCGTATATTAATTTTTCACCAAG 57.767 33.333 0.00 0.00 0.00 3.61
2757 6046 8.628882 AAGCGTATATTAATTTTTCACCAAGC 57.371 30.769 0.00 0.00 0.00 4.01
2758 6047 7.996385 AGCGTATATTAATTTTTCACCAAGCT 58.004 30.769 0.00 0.00 0.00 3.74
2759 6048 8.466798 AGCGTATATTAATTTTTCACCAAGCTT 58.533 29.630 0.00 0.00 0.00 3.74
2760 6049 9.083080 GCGTATATTAATTTTTCACCAAGCTTT 57.917 29.630 0.00 0.00 0.00 3.51
2766 6055 8.655651 TTAATTTTTCACCAAGCTTTACCAAG 57.344 30.769 0.00 0.00 0.00 3.61
2767 6056 5.669164 TTTTTCACCAAGCTTTACCAAGT 57.331 34.783 0.00 0.00 31.86 3.16
2768 6057 4.911514 TTTCACCAAGCTTTACCAAGTC 57.088 40.909 0.00 0.00 31.86 3.01
2769 6058 2.858745 TCACCAAGCTTTACCAAGTCC 58.141 47.619 0.00 0.00 31.86 3.85
2770 6059 2.173782 TCACCAAGCTTTACCAAGTCCA 59.826 45.455 0.00 0.00 31.86 4.02
2771 6060 3.157087 CACCAAGCTTTACCAAGTCCAT 58.843 45.455 0.00 0.00 31.86 3.41
2772 6061 4.042311 TCACCAAGCTTTACCAAGTCCATA 59.958 41.667 0.00 0.00 31.86 2.74
2773 6062 4.949856 CACCAAGCTTTACCAAGTCCATAT 59.050 41.667 0.00 0.00 31.86 1.78
2774 6063 6.069905 TCACCAAGCTTTACCAAGTCCATATA 60.070 38.462 0.00 0.00 31.86 0.86
2775 6064 6.038271 CACCAAGCTTTACCAAGTCCATATAC 59.962 42.308 0.00 0.00 31.86 1.47
2776 6065 6.119536 CCAAGCTTTACCAAGTCCATATACA 58.880 40.000 0.00 0.00 31.86 2.29
2777 6066 6.772716 CCAAGCTTTACCAAGTCCATATACAT 59.227 38.462 0.00 0.00 31.86 2.29
2778 6067 7.041098 CCAAGCTTTACCAAGTCCATATACATC 60.041 40.741 0.00 0.00 31.86 3.06
2779 6068 7.136822 AGCTTTACCAAGTCCATATACATCA 57.863 36.000 0.00 0.00 31.86 3.07
2780 6069 7.220030 AGCTTTACCAAGTCCATATACATCAG 58.780 38.462 0.00 0.00 31.86 2.90
2781 6070 6.428159 GCTTTACCAAGTCCATATACATCAGG 59.572 42.308 0.00 0.00 31.86 3.86
2782 6071 7.446106 TTTACCAAGTCCATATACATCAGGT 57.554 36.000 0.00 0.00 0.00 4.00
2783 6072 5.975988 ACCAAGTCCATATACATCAGGTT 57.024 39.130 0.00 0.00 0.00 3.50
2784 6073 6.327386 ACCAAGTCCATATACATCAGGTTT 57.673 37.500 0.00 0.00 0.00 3.27
2785 6074 7.446106 ACCAAGTCCATATACATCAGGTTTA 57.554 36.000 0.00 0.00 0.00 2.01
2786 6075 8.045720 ACCAAGTCCATATACATCAGGTTTAT 57.954 34.615 0.00 0.00 0.00 1.40
2787 6076 7.939039 ACCAAGTCCATATACATCAGGTTTATG 59.061 37.037 0.00 0.00 39.62 1.90
2788 6077 7.094634 CCAAGTCCATATACATCAGGTTTATGC 60.095 40.741 0.00 0.00 39.00 3.14
2789 6078 6.476378 AGTCCATATACATCAGGTTTATGCC 58.524 40.000 0.00 0.00 39.00 4.40
2790 6079 5.648092 GTCCATATACATCAGGTTTATGCCC 59.352 44.000 0.00 0.00 39.00 5.36
2791 6080 5.311913 TCCATATACATCAGGTTTATGCCCA 59.688 40.000 0.00 0.00 39.00 5.36
2792 6081 5.415701 CCATATACATCAGGTTTATGCCCAC 59.584 44.000 0.00 0.00 39.00 4.61
2793 6082 4.796110 ATACATCAGGTTTATGCCCACT 57.204 40.909 0.00 0.00 0.00 4.00
2794 6083 2.726821 ACATCAGGTTTATGCCCACTG 58.273 47.619 0.00 0.00 0.00 3.66
2795 6084 2.026641 CATCAGGTTTATGCCCACTGG 58.973 52.381 0.00 0.00 0.00 4.00
2854 6143 9.912634 ATCCAATGATTTACAACAAAACTAGTG 57.087 29.630 0.00 0.00 0.00 2.74
2855 6144 8.356657 TCCAATGATTTACAACAAAACTAGTGG 58.643 33.333 0.00 0.00 30.33 4.00
2856 6145 8.141268 CCAATGATTTACAACAAAACTAGTGGT 58.859 33.333 0.00 0.00 0.00 4.16
2857 6146 9.528018 CAATGATTTACAACAAAACTAGTGGTT 57.472 29.630 0.00 0.00 40.28 3.67
2858 6147 9.528018 AATGATTTACAACAAAACTAGTGGTTG 57.472 29.630 23.25 23.25 44.57 3.77
2859 6148 8.282455 TGATTTACAACAAAACTAGTGGTTGA 57.718 30.769 28.06 15.00 42.34 3.18
2860 6149 8.740906 TGATTTACAACAAAACTAGTGGTTGAA 58.259 29.630 28.06 18.75 42.34 2.69
2861 6150 8.920509 ATTTACAACAAAACTAGTGGTTGAAC 57.079 30.769 28.06 0.00 42.34 3.18
2862 6151 5.319140 ACAACAAAACTAGTGGTTGAACC 57.681 39.130 28.06 7.57 42.34 3.62
2863 6152 4.142556 ACAACAAAACTAGTGGTTGAACCG 60.143 41.667 28.06 15.33 42.58 4.44
2864 6153 3.613030 ACAAAACTAGTGGTTGAACCGT 58.387 40.909 20.79 1.93 42.58 4.83
2865 6154 4.011698 ACAAAACTAGTGGTTGAACCGTT 58.988 39.130 20.79 4.76 42.58 4.44
2866 6155 4.142556 ACAAAACTAGTGGTTGAACCGTTG 60.143 41.667 20.79 7.42 42.58 4.10
2867 6156 2.994186 ACTAGTGGTTGAACCGTTGT 57.006 45.000 10.16 3.99 42.58 3.32
2868 6157 4.405116 AACTAGTGGTTGAACCGTTGTA 57.595 40.909 10.16 0.00 42.58 2.41
2869 6158 4.405116 ACTAGTGGTTGAACCGTTGTAA 57.595 40.909 10.16 0.00 42.58 2.41
2870 6159 4.964593 ACTAGTGGTTGAACCGTTGTAAT 58.035 39.130 10.16 0.00 42.58 1.89
2871 6160 6.100404 ACTAGTGGTTGAACCGTTGTAATA 57.900 37.500 10.16 0.00 42.58 0.98
2872 6161 5.928264 ACTAGTGGTTGAACCGTTGTAATAC 59.072 40.000 10.16 0.00 42.58 1.89
2873 6162 4.706035 AGTGGTTGAACCGTTGTAATACA 58.294 39.130 10.16 0.00 42.58 2.29
2874 6163 4.512571 AGTGGTTGAACCGTTGTAATACAC 59.487 41.667 10.16 0.00 42.58 2.90
2875 6164 3.814283 TGGTTGAACCGTTGTAATACACC 59.186 43.478 10.16 0.00 42.58 4.16
2876 6165 3.814283 GGTTGAACCGTTGTAATACACCA 59.186 43.478 0.00 0.00 0.00 4.17
2877 6166 4.275443 GGTTGAACCGTTGTAATACACCAA 59.725 41.667 0.00 0.00 0.00 3.67
2878 6167 5.445845 GTTGAACCGTTGTAATACACCAAG 58.554 41.667 0.00 0.00 0.00 3.61
2879 6168 4.706035 TGAACCGTTGTAATACACCAAGT 58.294 39.130 0.00 0.00 0.00 3.16
2907 6196 8.906867 TCTTCAAGTTCCATATCCATCATTTTC 58.093 33.333 0.00 0.00 0.00 2.29
2909 6198 7.999679 TCAAGTTCCATATCCATCATTTTCAC 58.000 34.615 0.00 0.00 0.00 3.18
2915 6204 6.840181 TCCATATCCATCATTTTCACACCATT 59.160 34.615 0.00 0.00 0.00 3.16
2917 6206 7.439955 CCATATCCATCATTTTCACACCATTTG 59.560 37.037 0.00 0.00 0.00 2.32
2929 6218 9.853555 TTTTCACACCATTTGAATACATGATAC 57.146 29.630 0.00 0.00 33.03 2.24
2930 6219 8.572855 TTCACACCATTTGAATACATGATACA 57.427 30.769 0.00 0.00 0.00 2.29
3037 6326 2.664402 AGGAGCCATGTTTCACAAGT 57.336 45.000 0.00 0.00 0.00 3.16
3115 6404 8.528044 TGTGGTGTATCATGTATCACTAAGTA 57.472 34.615 13.17 1.17 0.00 2.24
3155 6444 8.133627 CCATCTCTTAAAATTAGAATGCCACAG 58.866 37.037 0.00 0.00 0.00 3.66
3161 6450 3.855689 ATTAGAATGCCACAGTGCAAC 57.144 42.857 0.00 0.00 45.84 4.17
3292 6586 8.593679 TCGGACACATGTTCTTATTATCCATAT 58.406 33.333 0.00 0.00 0.00 1.78
3313 6607 0.957395 AGACGCCCACAAATGCTCAG 60.957 55.000 0.00 0.00 0.00 3.35
3315 6609 1.237285 ACGCCCACAAATGCTCAGTC 61.237 55.000 0.00 0.00 0.00 3.51
3334 6628 5.532032 TCAGTCAGATCATTTTGAAGTTGCA 59.468 36.000 0.00 0.00 0.00 4.08
3347 6641 4.183865 TGAAGTTGCATATGAGTTCCTCG 58.816 43.478 6.97 0.00 32.35 4.63
3356 6650 5.931146 GCATATGAGTTCCTCGATTGAGAAT 59.069 40.000 11.89 0.00 45.57 2.40
3370 6664 4.976224 TTGAGAATTGATGGTGCATCTG 57.024 40.909 0.00 0.00 41.06 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.244769 GGGAAGGGATTTGAAGATGGGA 59.755 50.000 0.00 0.00 0.00 4.37
52 53 1.604378 CTTCCCGTCCTGCCATTCT 59.396 57.895 0.00 0.00 0.00 2.40
59 60 0.669625 GACGTTTCCTTCCCGTCCTG 60.670 60.000 0.00 0.00 43.77 3.86
163 164 9.046296 CACTTGCGATATTCCTTCTATTTACTT 57.954 33.333 0.00 0.00 0.00 2.24
164 165 8.421784 TCACTTGCGATATTCCTTCTATTTACT 58.578 33.333 0.00 0.00 0.00 2.24
165 166 8.488764 GTCACTTGCGATATTCCTTCTATTTAC 58.511 37.037 0.00 0.00 0.00 2.01
166 167 8.201464 TGTCACTTGCGATATTCCTTCTATTTA 58.799 33.333 0.00 0.00 0.00 1.40
167 168 7.047891 TGTCACTTGCGATATTCCTTCTATTT 58.952 34.615 0.00 0.00 0.00 1.40
168 169 6.582636 TGTCACTTGCGATATTCCTTCTATT 58.417 36.000 0.00 0.00 0.00 1.73
169 170 6.161855 TGTCACTTGCGATATTCCTTCTAT 57.838 37.500 0.00 0.00 0.00 1.98
170 171 5.592104 TGTCACTTGCGATATTCCTTCTA 57.408 39.130 0.00 0.00 0.00 2.10
171 172 4.471904 TGTCACTTGCGATATTCCTTCT 57.528 40.909 0.00 0.00 0.00 2.85
172 173 4.494855 GCTTGTCACTTGCGATATTCCTTC 60.495 45.833 0.00 0.00 0.00 3.46
173 174 3.375299 GCTTGTCACTTGCGATATTCCTT 59.625 43.478 0.00 0.00 0.00 3.36
174 175 2.939103 GCTTGTCACTTGCGATATTCCT 59.061 45.455 0.00 0.00 0.00 3.36
175 176 2.939103 AGCTTGTCACTTGCGATATTCC 59.061 45.455 0.00 0.00 0.00 3.01
176 177 3.868077 AGAGCTTGTCACTTGCGATATTC 59.132 43.478 0.00 0.00 0.00 1.75
177 178 3.866651 AGAGCTTGTCACTTGCGATATT 58.133 40.909 0.00 0.00 0.00 1.28
184 185 4.876125 TGTTCTAGAGAGCTTGTCACTTG 58.124 43.478 0.00 0.00 0.00 3.16
190 191 5.736951 ACTTCATGTTCTAGAGAGCTTGT 57.263 39.130 8.46 0.00 33.99 3.16
221 222 2.289444 ACCAGTTAACCGATCCAGTGTG 60.289 50.000 0.88 0.00 0.00 3.82
223 224 2.618053 GACCAGTTAACCGATCCAGTG 58.382 52.381 0.88 0.00 0.00 3.66
228 229 3.604875 TCTTGGACCAGTTAACCGATC 57.395 47.619 0.88 0.00 0.00 3.69
231 232 3.396260 TCTTCTTGGACCAGTTAACCG 57.604 47.619 0.88 0.00 0.00 4.44
241 242 7.630242 TGATTGGTTCATTATCTTCTTGGAC 57.370 36.000 0.00 0.00 0.00 4.02
255 256 1.031571 GCGAGGGCATGATTGGTTCA 61.032 55.000 0.00 0.00 39.62 3.18
266 267 1.227704 TTTTCAAGTCGCGAGGGCA 60.228 52.632 10.24 0.00 39.92 5.36
309 310 3.440173 CCACCTAAGCAAACCATGTACAG 59.560 47.826 0.33 0.00 0.00 2.74
339 340 3.734231 TCTTTTAACGTGTCTTCGCTGAG 59.266 43.478 0.00 0.00 0.00 3.35
348 349 6.290385 CGCTGAAGTTTTTCTTTTAACGTGTC 60.290 38.462 0.00 0.00 36.40 3.67
352 353 5.109261 CGTCGCTGAAGTTTTTCTTTTAACG 60.109 40.000 0.00 0.00 36.40 3.18
357 358 3.372822 TGTCGTCGCTGAAGTTTTTCTTT 59.627 39.130 0.00 0.00 36.40 2.52
375 376 2.277834 GCGACCAAGTTTTGTTTTGTCG 59.722 45.455 0.00 0.00 34.29 4.35
405 406 1.094785 AAGAATGGTTGCGATTCCCG 58.905 50.000 0.00 0.00 42.21 5.14
413 414 2.738314 GGTTGCATCAAAGAATGGTTGC 59.262 45.455 0.00 0.00 38.36 4.17
442 443 6.143915 TGCCTAGAAGGGTGATAATTAGAGT 58.856 40.000 0.00 0.00 35.37 3.24
448 449 8.282256 AGTTTTTATGCCTAGAAGGGTGATAAT 58.718 33.333 0.00 0.00 35.37 1.28
478 479 1.413767 CTCGCTTGTTCGATCACCGG 61.414 60.000 0.00 0.00 37.87 5.28
479 480 1.413767 CCTCGCTTGTTCGATCACCG 61.414 60.000 0.00 2.91 37.87 4.94
504 505 2.148768 CCACCGGTAAAAGACTGAACC 58.851 52.381 6.87 0.00 36.40 3.62
510 511 0.689055 AGGTCCCACCGGTAAAAGAC 59.311 55.000 6.87 11.73 44.90 3.01
511 512 0.978907 GAGGTCCCACCGGTAAAAGA 59.021 55.000 6.87 0.00 44.90 2.52
512 513 0.035725 GGAGGTCCCACCGGTAAAAG 60.036 60.000 6.87 0.00 44.90 2.27
513 514 1.829523 CGGAGGTCCCACCGGTAAAA 61.830 60.000 6.87 0.00 44.90 1.52
514 515 2.285024 CGGAGGTCCCACCGGTAAA 61.285 63.158 6.87 0.00 44.90 2.01
515 516 2.681064 CGGAGGTCCCACCGGTAA 60.681 66.667 6.87 0.00 44.90 2.85
532 533 0.320160 AGACAGCGAACCGGTTAACC 60.320 55.000 22.33 15.13 34.62 2.85
533 534 0.788391 CAGACAGCGAACCGGTTAAC 59.212 55.000 22.33 15.44 34.62 2.01
534 535 0.390124 ACAGACAGCGAACCGGTTAA 59.610 50.000 22.33 0.00 34.62 2.01
535 536 0.390124 AACAGACAGCGAACCGGTTA 59.610 50.000 22.33 0.00 34.62 2.85
536 537 0.463116 AAACAGACAGCGAACCGGTT 60.463 50.000 22.50 22.50 34.62 4.44
537 538 0.463116 AAAACAGACAGCGAACCGGT 60.463 50.000 0.00 0.00 38.40 5.28
617 755 3.306472 TGGTTGGCCAACTTTCTAGTT 57.694 42.857 39.80 0.00 45.40 2.24
668 806 4.366586 CCATGATGCTAGATATAGGTGCG 58.633 47.826 0.00 0.00 0.00 5.34
675 813 7.395489 GGAATTCAAACCCATGATGCTAGATAT 59.605 37.037 7.93 0.00 0.00 1.63
679 817 4.038402 GGGAATTCAAACCCATGATGCTAG 59.962 45.833 7.93 0.00 44.96 3.42
689 827 2.609491 GCGTCAAAGGGAATTCAAACCC 60.609 50.000 7.93 0.00 45.88 4.11
712 850 7.170658 GCCACACACAAAATTAGAAAAATAGCA 59.829 33.333 0.00 0.00 0.00 3.49
714 852 8.586570 TGCCACACACAAAATTAGAAAAATAG 57.413 30.769 0.00 0.00 0.00 1.73
735 873 1.525077 GGTGGTTGAACGAGTGCCA 60.525 57.895 0.00 0.00 0.00 4.92
742 880 4.632688 AGATATAAAACCGGTGGTTGAACG 59.367 41.667 8.52 0.00 46.20 3.95
751 889 5.687166 TGAACTGGAGATATAAAACCGGT 57.313 39.130 0.00 0.00 42.83 5.28
766 904 1.782044 CCGGTTTTTGCATGAACTGG 58.218 50.000 20.02 20.02 43.63 4.00
768 906 0.033366 GGCCGGTTTTTGCATGAACT 59.967 50.000 1.90 0.00 0.00 3.01
772 910 0.667184 GACTGGCCGGTTTTTGCATG 60.667 55.000 20.79 0.00 0.00 4.06
805 943 0.673437 ACCAACCTGCAAATTGACCG 59.327 50.000 10.46 0.00 0.00 4.79
810 948 5.056480 GCTAAAAAGACCAACCTGCAAATT 58.944 37.500 0.00 0.00 0.00 1.82
812 950 3.704061 AGCTAAAAAGACCAACCTGCAAA 59.296 39.130 0.00 0.00 0.00 3.68
815 953 5.447624 TTAAGCTAAAAAGACCAACCTGC 57.552 39.130 0.00 0.00 0.00 4.85
837 975 1.600511 CGGCGCCCCTATTGGTTTTT 61.601 55.000 23.46 0.00 0.00 1.94
844 982 4.185286 GGAACCGGCGCCCCTATT 62.185 66.667 23.46 10.03 0.00 1.73
902 1040 3.687572 TGCCGTCTCGAAGTATAGTTC 57.312 47.619 9.88 9.88 0.00 3.01
914 1052 5.900339 TTCGTATCATATTTTGCCGTCTC 57.100 39.130 0.00 0.00 0.00 3.36
918 1056 4.670621 GTGCTTTCGTATCATATTTTGCCG 59.329 41.667 0.00 0.00 0.00 5.69
946 1084 0.465460 GGGAGCGGTATTGATGGCAA 60.465 55.000 0.00 0.00 38.60 4.52
947 1085 1.148273 GGGAGCGGTATTGATGGCA 59.852 57.895 0.00 0.00 0.00 4.92
948 1086 0.179018 AAGGGAGCGGTATTGATGGC 60.179 55.000 0.00 0.00 0.00 4.40
949 1087 1.949525 CAAAGGGAGCGGTATTGATGG 59.050 52.381 0.00 0.00 0.00 3.51
950 1088 2.643551 ACAAAGGGAGCGGTATTGATG 58.356 47.619 8.35 0.00 0.00 3.07
951 1089 3.016736 CAACAAAGGGAGCGGTATTGAT 58.983 45.455 8.35 0.00 0.00 2.57
952 1090 2.432444 CAACAAAGGGAGCGGTATTGA 58.568 47.619 8.35 0.00 0.00 2.57
953 1091 1.472480 CCAACAAAGGGAGCGGTATTG 59.528 52.381 0.00 0.00 0.00 1.90
954 1092 1.353022 TCCAACAAAGGGAGCGGTATT 59.647 47.619 0.00 0.00 0.00 1.89
955 1093 0.988832 TCCAACAAAGGGAGCGGTAT 59.011 50.000 0.00 0.00 0.00 2.73
956 1094 0.323629 CTCCAACAAAGGGAGCGGTA 59.676 55.000 0.00 0.00 44.95 4.02
957 1095 1.073199 CTCCAACAAAGGGAGCGGT 59.927 57.895 0.00 0.00 44.95 5.68
958 1096 3.987404 CTCCAACAAAGGGAGCGG 58.013 61.111 0.00 0.00 44.95 5.52
962 1100 0.328258 GCTAGGCTCCAACAAAGGGA 59.672 55.000 0.00 0.00 0.00 4.20
963 1101 0.329596 AGCTAGGCTCCAACAAAGGG 59.670 55.000 0.00 0.00 30.62 3.95
964 1102 2.911484 CTAGCTAGGCTCCAACAAAGG 58.089 52.381 13.32 0.00 40.44 3.11
965 1103 2.284190 GCTAGCTAGGCTCCAACAAAG 58.716 52.381 22.10 0.00 40.44 2.77
966 1104 1.405526 CGCTAGCTAGGCTCCAACAAA 60.406 52.381 22.10 0.00 40.44 2.83
967 1105 0.175760 CGCTAGCTAGGCTCCAACAA 59.824 55.000 22.10 0.00 40.44 2.83
968 1106 0.970937 ACGCTAGCTAGGCTCCAACA 60.971 55.000 22.10 0.00 40.44 3.33
969 1107 0.249114 GACGCTAGCTAGGCTCCAAC 60.249 60.000 22.10 2.73 40.44 3.77
970 1108 0.395862 AGACGCTAGCTAGGCTCCAA 60.396 55.000 22.10 0.00 40.44 3.53
971 1109 1.103987 CAGACGCTAGCTAGGCTCCA 61.104 60.000 22.10 0.00 40.44 3.86
972 1110 0.820074 TCAGACGCTAGCTAGGCTCC 60.820 60.000 22.10 4.54 40.44 4.70
973 1111 0.309612 GTCAGACGCTAGCTAGGCTC 59.690 60.000 22.10 12.43 40.44 4.70
974 1112 1.104577 GGTCAGACGCTAGCTAGGCT 61.105 60.000 22.10 2.11 43.41 4.58
975 1113 1.360911 GGTCAGACGCTAGCTAGGC 59.639 63.158 22.10 13.01 0.00 3.93
976 1114 0.752009 TGGGTCAGACGCTAGCTAGG 60.752 60.000 22.10 14.10 31.67 3.02
977 1115 1.066303 CTTGGGTCAGACGCTAGCTAG 59.934 57.143 16.84 16.84 29.05 3.42
978 1116 1.103803 CTTGGGTCAGACGCTAGCTA 58.896 55.000 17.85 0.00 29.05 3.32
979 1117 1.608717 CCTTGGGTCAGACGCTAGCT 61.609 60.000 19.47 0.00 33.86 3.32
980 1118 1.153549 CCTTGGGTCAGACGCTAGC 60.154 63.158 19.47 4.06 33.86 3.42
981 1119 0.895530 TTCCTTGGGTCAGACGCTAG 59.104 55.000 18.37 18.37 34.68 3.42
982 1120 1.207089 CATTCCTTGGGTCAGACGCTA 59.793 52.381 17.85 10.04 31.67 4.26
983 1121 0.036010 CATTCCTTGGGTCAGACGCT 60.036 55.000 17.85 0.00 31.67 5.07
984 1122 1.026718 CCATTCCTTGGGTCAGACGC 61.027 60.000 10.71 10.71 42.33 5.19
985 1123 0.613260 TCCATTCCTTGGGTCAGACG 59.387 55.000 0.00 0.00 46.45 4.18
986 1124 1.676014 CGTCCATTCCTTGGGTCAGAC 60.676 57.143 0.00 0.00 46.45 3.51
987 1125 0.613260 CGTCCATTCCTTGGGTCAGA 59.387 55.000 0.00 0.00 46.45 3.27
988 1126 1.026718 GCGTCCATTCCTTGGGTCAG 61.027 60.000 0.00 0.00 46.45 3.51
1301 1483 3.969250 AACGGCGGTGCATCGGAAT 62.969 57.895 22.81 0.00 0.00 3.01
1764 2296 4.100084 AGCCACGCCATGCAGCTA 62.100 61.111 0.00 0.00 29.54 3.32
1824 2356 2.496817 GAGATCACGGCGAGGCTT 59.503 61.111 16.62 0.00 0.00 4.35
1923 2455 1.374758 CACGGAGCCTGTGGTCTTC 60.375 63.158 6.32 0.00 39.02 2.87
2046 2632 2.863346 CGTCGAGTTCCACCCACCA 61.863 63.158 0.00 0.00 0.00 4.17
2106 2692 1.448540 CTGCTGGTCGGCGAAGAAT 60.449 57.895 12.92 0.00 34.52 2.40
2164 2753 2.225091 TGCAAAGGTCCTTCATGTCCAT 60.225 45.455 4.10 0.00 0.00 3.41
2185 2774 1.602237 CCTGTACGATGGCCCTGTT 59.398 57.895 0.00 0.00 0.00 3.16
2200 2789 1.994463 CTTCCCTCACCTTCCCCTG 59.006 63.158 0.00 0.00 0.00 4.45
2347 2937 0.750850 TAGGACATAAGCTCACGGGC 59.249 55.000 0.00 0.00 0.00 6.13
2350 2940 5.126396 TCATCATAGGACATAAGCTCACG 57.874 43.478 0.00 0.00 0.00 4.35
2351 2941 6.462500 ACATCATCATAGGACATAAGCTCAC 58.538 40.000 0.00 0.00 0.00 3.51
2352 2942 6.676990 ACATCATCATAGGACATAAGCTCA 57.323 37.500 0.00 0.00 0.00 4.26
2353 2943 8.694540 AGATACATCATCATAGGACATAAGCTC 58.305 37.037 0.00 0.00 35.96 4.09
2355 2945 8.473219 TGAGATACATCATCATAGGACATAAGC 58.527 37.037 0.00 0.00 35.96 3.09
2359 2949 9.187996 CTACTGAGATACATCATCATAGGACAT 57.812 37.037 0.00 0.00 35.96 3.06
2360 2950 8.166726 ACTACTGAGATACATCATCATAGGACA 58.833 37.037 0.00 0.00 35.96 4.02
2422 3068 7.649705 CGTGACTGATGCATACTTAGAACTAAT 59.350 37.037 0.00 0.00 0.00 1.73
2423 3069 6.972901 CGTGACTGATGCATACTTAGAACTAA 59.027 38.462 0.00 0.00 0.00 2.24
2425 3071 5.105716 ACGTGACTGATGCATACTTAGAACT 60.106 40.000 0.00 0.00 0.00 3.01
2426 3072 5.103000 ACGTGACTGATGCATACTTAGAAC 58.897 41.667 0.00 0.84 0.00 3.01
2476 3260 8.940397 AGAAGTTTCAGGAATATGAGGAAAAA 57.060 30.769 0.00 0.00 0.00 1.94
2477 3261 8.386264 AGAGAAGTTTCAGGAATATGAGGAAAA 58.614 33.333 0.00 0.00 0.00 2.29
2482 3266 7.069826 AGAGGAGAGAAGTTTCAGGAATATGAG 59.930 40.741 0.00 0.00 0.00 2.90
2498 3282 6.334237 ACTCTGATAGGGAATAGAGGAGAGAA 59.666 42.308 0.00 0.00 40.66 2.87
2499 3283 5.855040 ACTCTGATAGGGAATAGAGGAGAGA 59.145 44.000 0.00 0.00 40.66 3.10
2500 3284 5.945784 CACTCTGATAGGGAATAGAGGAGAG 59.054 48.000 0.00 0.00 40.66 3.20
2508 3292 4.030216 TGTGTGCACTCTGATAGGGAATA 58.970 43.478 19.41 0.00 0.00 1.75
2509 3293 2.840038 TGTGTGCACTCTGATAGGGAAT 59.160 45.455 19.41 0.00 0.00 3.01
2544 3328 4.886496 TCATGTGAAAAATGCATGGGAA 57.114 36.364 0.00 0.00 29.22 3.97
2553 3337 9.820725 TTCAAACTCTGAAATCATGTGAAAAAT 57.179 25.926 0.00 0.00 41.21 1.82
2619 3403 4.270566 GCATGAAACACAAAGATGCAAACA 59.729 37.500 0.00 0.00 32.89 2.83
2640 3424 3.401033 TTTCTCGAAGTCCTCATTGCA 57.599 42.857 0.00 0.00 0.00 4.08
2708 5997 9.273016 CTTCCTTGTGTTTCATAGAGTTTAGAA 57.727 33.333 0.00 0.00 0.00 2.10
2709 5998 7.387948 GCTTCCTTGTGTTTCATAGAGTTTAGA 59.612 37.037 0.00 0.00 0.00 2.10
2711 6000 6.147164 CGCTTCCTTGTGTTTCATAGAGTTTA 59.853 38.462 0.00 0.00 0.00 2.01
2712 6001 5.049405 CGCTTCCTTGTGTTTCATAGAGTTT 60.049 40.000 0.00 0.00 0.00 2.66
2713 6002 4.452455 CGCTTCCTTGTGTTTCATAGAGTT 59.548 41.667 0.00 0.00 0.00 3.01
2714 6003 3.997021 CGCTTCCTTGTGTTTCATAGAGT 59.003 43.478 0.00 0.00 0.00 3.24
2716 6005 4.002906 ACGCTTCCTTGTGTTTCATAGA 57.997 40.909 0.00 0.00 0.00 1.98
2717 6006 7.715265 ATATACGCTTCCTTGTGTTTCATAG 57.285 36.000 0.00 0.00 32.52 2.23
2718 6007 9.602568 TTAATATACGCTTCCTTGTGTTTCATA 57.397 29.630 0.00 0.00 32.52 2.15
2719 6008 8.500753 TTAATATACGCTTCCTTGTGTTTCAT 57.499 30.769 0.00 0.00 32.52 2.57
2720 6009 7.908827 TTAATATACGCTTCCTTGTGTTTCA 57.091 32.000 0.00 0.00 32.52 2.69
2721 6010 9.783256 AAATTAATATACGCTTCCTTGTGTTTC 57.217 29.630 0.00 0.00 32.52 2.78
2724 6013 9.783256 GAAAAATTAATATACGCTTCCTTGTGT 57.217 29.630 0.00 0.00 34.78 3.72
2725 6014 9.781834 TGAAAAATTAATATACGCTTCCTTGTG 57.218 29.630 0.00 0.00 0.00 3.33
2726 6015 9.783256 GTGAAAAATTAATATACGCTTCCTTGT 57.217 29.630 0.00 0.00 0.00 3.16
2727 6016 9.233232 GGTGAAAAATTAATATACGCTTCCTTG 57.767 33.333 0.00 0.00 0.00 3.61
2728 6017 8.962679 TGGTGAAAAATTAATATACGCTTCCTT 58.037 29.630 0.00 0.00 0.00 3.36
2729 6018 8.514330 TGGTGAAAAATTAATATACGCTTCCT 57.486 30.769 0.00 0.00 0.00 3.36
2730 6019 9.233232 CTTGGTGAAAAATTAATATACGCTTCC 57.767 33.333 0.00 0.00 0.00 3.46
2731 6020 8.743099 GCTTGGTGAAAAATTAATATACGCTTC 58.257 33.333 0.00 0.00 0.00 3.86
2732 6021 8.466798 AGCTTGGTGAAAAATTAATATACGCTT 58.533 29.630 0.00 0.00 0.00 4.68
2733 6022 7.996385 AGCTTGGTGAAAAATTAATATACGCT 58.004 30.769 0.00 0.00 0.00 5.07
2734 6023 8.628882 AAGCTTGGTGAAAAATTAATATACGC 57.371 30.769 0.00 0.00 0.00 4.42
2740 6029 9.271828 CTTGGTAAAGCTTGGTGAAAAATTAAT 57.728 29.630 0.00 0.00 0.00 1.40
2741 6030 8.261522 ACTTGGTAAAGCTTGGTGAAAAATTAA 58.738 29.630 0.00 0.00 36.84 1.40
2742 6031 7.787028 ACTTGGTAAAGCTTGGTGAAAAATTA 58.213 30.769 0.00 0.00 36.84 1.40
2743 6032 6.649155 ACTTGGTAAAGCTTGGTGAAAAATT 58.351 32.000 0.00 0.00 36.84 1.82
2744 6033 6.233905 ACTTGGTAAAGCTTGGTGAAAAAT 57.766 33.333 0.00 0.00 36.84 1.82
2745 6034 5.394773 GGACTTGGTAAAGCTTGGTGAAAAA 60.395 40.000 0.00 0.00 36.84 1.94
2746 6035 4.098807 GGACTTGGTAAAGCTTGGTGAAAA 59.901 41.667 0.00 0.00 36.84 2.29
2747 6036 3.634910 GGACTTGGTAAAGCTTGGTGAAA 59.365 43.478 0.00 0.00 36.84 2.69
2748 6037 3.219281 GGACTTGGTAAAGCTTGGTGAA 58.781 45.455 0.00 0.00 36.84 3.18
2749 6038 2.173782 TGGACTTGGTAAAGCTTGGTGA 59.826 45.455 0.00 0.00 36.84 4.02
2750 6039 2.582052 TGGACTTGGTAAAGCTTGGTG 58.418 47.619 0.00 0.00 36.84 4.17
2751 6040 3.525800 ATGGACTTGGTAAAGCTTGGT 57.474 42.857 0.00 0.00 36.84 3.67
2752 6041 6.119536 TGTATATGGACTTGGTAAAGCTTGG 58.880 40.000 0.00 0.00 36.84 3.61
2753 6042 7.498900 TGATGTATATGGACTTGGTAAAGCTTG 59.501 37.037 0.00 0.00 36.84 4.01
2754 6043 7.573710 TGATGTATATGGACTTGGTAAAGCTT 58.426 34.615 0.00 0.00 36.84 3.74
2755 6044 7.136822 TGATGTATATGGACTTGGTAAAGCT 57.863 36.000 0.00 0.00 36.84 3.74
2756 6045 6.428159 CCTGATGTATATGGACTTGGTAAAGC 59.572 42.308 0.00 0.00 36.84 3.51
2757 6046 7.509546 ACCTGATGTATATGGACTTGGTAAAG 58.490 38.462 0.00 0.00 39.49 1.85
2758 6047 7.446106 ACCTGATGTATATGGACTTGGTAAA 57.554 36.000 0.00 0.00 0.00 2.01
2759 6048 7.446106 AACCTGATGTATATGGACTTGGTAA 57.554 36.000 0.00 0.00 0.00 2.85
2760 6049 7.446106 AAACCTGATGTATATGGACTTGGTA 57.554 36.000 0.00 0.00 0.00 3.25
2761 6050 5.975988 AACCTGATGTATATGGACTTGGT 57.024 39.130 0.00 0.00 0.00 3.67
2762 6051 7.094634 GCATAAACCTGATGTATATGGACTTGG 60.095 40.741 0.00 0.00 0.00 3.61
2763 6052 7.094634 GGCATAAACCTGATGTATATGGACTTG 60.095 40.741 0.00 0.00 0.00 3.16
2764 6053 6.942576 GGCATAAACCTGATGTATATGGACTT 59.057 38.462 0.00 0.00 0.00 3.01
2765 6054 6.476378 GGCATAAACCTGATGTATATGGACT 58.524 40.000 0.00 0.00 0.00 3.85
2766 6055 5.648092 GGGCATAAACCTGATGTATATGGAC 59.352 44.000 0.00 0.00 0.00 4.02
2767 6056 5.311913 TGGGCATAAACCTGATGTATATGGA 59.688 40.000 0.00 0.00 0.00 3.41
2768 6057 5.415701 GTGGGCATAAACCTGATGTATATGG 59.584 44.000 0.00 0.00 0.00 2.74
2769 6058 6.149973 CAGTGGGCATAAACCTGATGTATATG 59.850 42.308 0.00 0.00 0.00 1.78
2770 6059 6.240894 CAGTGGGCATAAACCTGATGTATAT 58.759 40.000 0.00 0.00 0.00 0.86
2771 6060 5.456042 CCAGTGGGCATAAACCTGATGTATA 60.456 44.000 0.00 0.00 0.00 1.47
2772 6061 4.464008 CAGTGGGCATAAACCTGATGTAT 58.536 43.478 0.00 0.00 0.00 2.29
2773 6062 3.371487 CCAGTGGGCATAAACCTGATGTA 60.371 47.826 0.00 0.00 0.00 2.29
2774 6063 2.621407 CCAGTGGGCATAAACCTGATGT 60.621 50.000 0.00 0.00 0.00 3.06
2775 6064 2.026641 CCAGTGGGCATAAACCTGATG 58.973 52.381 0.00 0.00 0.00 3.07
2776 6065 2.442236 CCAGTGGGCATAAACCTGAT 57.558 50.000 0.00 0.00 0.00 2.90
2777 6066 3.976704 CCAGTGGGCATAAACCTGA 57.023 52.632 0.00 0.00 0.00 3.86
2828 6117 9.912634 CACTAGTTTTGTTGTAAATCATTGGAT 57.087 29.630 0.00 0.00 34.43 3.41
2829 6118 8.356657 CCACTAGTTTTGTTGTAAATCATTGGA 58.643 33.333 0.00 0.00 0.00 3.53
2830 6119 8.141268 ACCACTAGTTTTGTTGTAAATCATTGG 58.859 33.333 0.00 0.00 0.00 3.16
2831 6120 9.528018 AACCACTAGTTTTGTTGTAAATCATTG 57.472 29.630 0.00 0.00 33.89 2.82
2832 6121 9.528018 CAACCACTAGTTTTGTTGTAAATCATT 57.472 29.630 16.26 0.00 36.18 2.57
2833 6122 8.908903 TCAACCACTAGTTTTGTTGTAAATCAT 58.091 29.630 20.63 0.00 39.22 2.45
2834 6123 8.282455 TCAACCACTAGTTTTGTTGTAAATCA 57.718 30.769 20.63 6.21 39.22 2.57
2835 6124 9.016623 GTTCAACCACTAGTTTTGTTGTAAATC 57.983 33.333 20.63 10.21 39.22 2.17
2836 6125 7.977293 GGTTCAACCACTAGTTTTGTTGTAAAT 59.023 33.333 20.63 0.00 38.42 1.40
2837 6126 7.314393 GGTTCAACCACTAGTTTTGTTGTAAA 58.686 34.615 20.63 11.58 38.42 2.01
2838 6127 6.403418 CGGTTCAACCACTAGTTTTGTTGTAA 60.403 38.462 20.63 14.25 38.47 2.41
2839 6128 5.064962 CGGTTCAACCACTAGTTTTGTTGTA 59.935 40.000 20.63 13.46 38.47 2.41
2840 6129 4.142556 CGGTTCAACCACTAGTTTTGTTGT 60.143 41.667 20.63 1.17 38.47 3.32
2841 6130 4.142556 ACGGTTCAACCACTAGTTTTGTTG 60.143 41.667 17.57 17.57 38.47 3.33
2842 6131 4.011698 ACGGTTCAACCACTAGTTTTGTT 58.988 39.130 7.52 5.44 38.47 2.83
2843 6132 3.613030 ACGGTTCAACCACTAGTTTTGT 58.387 40.909 7.52 0.00 38.47 2.83
2844 6133 4.142556 ACAACGGTTCAACCACTAGTTTTG 60.143 41.667 7.52 7.43 38.47 2.44
2845 6134 4.011698 ACAACGGTTCAACCACTAGTTTT 58.988 39.130 7.52 0.00 38.47 2.43
2846 6135 3.613030 ACAACGGTTCAACCACTAGTTT 58.387 40.909 7.52 0.00 38.47 2.66
2847 6136 3.271055 ACAACGGTTCAACCACTAGTT 57.729 42.857 7.52 0.00 38.47 2.24
2848 6137 2.994186 ACAACGGTTCAACCACTAGT 57.006 45.000 7.52 0.00 38.47 2.57
2849 6138 5.927689 TGTATTACAACGGTTCAACCACTAG 59.072 40.000 7.52 0.00 38.47 2.57
2850 6139 5.695816 GTGTATTACAACGGTTCAACCACTA 59.304 40.000 7.52 0.00 38.47 2.74
2851 6140 4.512571 GTGTATTACAACGGTTCAACCACT 59.487 41.667 7.52 0.00 38.47 4.00
2852 6141 4.319694 GGTGTATTACAACGGTTCAACCAC 60.320 45.833 7.52 0.00 38.47 4.16
2853 6142 3.814283 GGTGTATTACAACGGTTCAACCA 59.186 43.478 7.52 0.00 38.47 3.67
2854 6143 3.814283 TGGTGTATTACAACGGTTCAACC 59.186 43.478 7.34 0.00 39.05 3.77
2855 6144 5.007921 ACTTGGTGTATTACAACGGTTCAAC 59.992 40.000 7.34 0.00 39.05 3.18
2856 6145 5.124645 ACTTGGTGTATTACAACGGTTCAA 58.875 37.500 7.34 0.00 39.05 2.69
2857 6146 4.706035 ACTTGGTGTATTACAACGGTTCA 58.294 39.130 7.34 0.00 39.05 3.18
2858 6147 5.678132 AACTTGGTGTATTACAACGGTTC 57.322 39.130 13.60 0.00 39.05 3.62
2859 6148 5.824097 AGAAACTTGGTGTATTACAACGGTT 59.176 36.000 13.60 13.60 39.05 4.44
2860 6149 5.370679 AGAAACTTGGTGTATTACAACGGT 58.629 37.500 7.34 6.03 39.05 4.83
2861 6150 5.934935 AGAAACTTGGTGTATTACAACGG 57.065 39.130 7.34 5.46 39.05 4.44
2862 6151 6.950545 TGAAGAAACTTGGTGTATTACAACG 58.049 36.000 7.34 0.00 39.05 4.10
2863 6152 8.403236 ACTTGAAGAAACTTGGTGTATTACAAC 58.597 33.333 4.86 4.86 36.06 3.32
2864 6153 8.514330 ACTTGAAGAAACTTGGTGTATTACAA 57.486 30.769 0.00 0.00 0.00 2.41
2865 6154 8.514330 AACTTGAAGAAACTTGGTGTATTACA 57.486 30.769 0.00 0.00 0.00 2.41
2866 6155 8.074370 GGAACTTGAAGAAACTTGGTGTATTAC 58.926 37.037 0.00 0.00 0.00 1.89
2867 6156 7.776030 TGGAACTTGAAGAAACTTGGTGTATTA 59.224 33.333 0.00 0.00 0.00 0.98
2868 6157 6.605594 TGGAACTTGAAGAAACTTGGTGTATT 59.394 34.615 0.00 0.00 0.00 1.89
2869 6158 6.126409 TGGAACTTGAAGAAACTTGGTGTAT 58.874 36.000 0.00 0.00 0.00 2.29
2870 6159 5.502079 TGGAACTTGAAGAAACTTGGTGTA 58.498 37.500 0.00 0.00 0.00 2.90
2871 6160 4.340617 TGGAACTTGAAGAAACTTGGTGT 58.659 39.130 0.00 0.00 0.00 4.16
2872 6161 4.981806 TGGAACTTGAAGAAACTTGGTG 57.018 40.909 0.00 0.00 0.00 4.17
2873 6162 6.434340 GGATATGGAACTTGAAGAAACTTGGT 59.566 38.462 0.00 0.00 0.00 3.67
2874 6163 6.434028 TGGATATGGAACTTGAAGAAACTTGG 59.566 38.462 0.00 0.00 0.00 3.61
2875 6164 7.452880 TGGATATGGAACTTGAAGAAACTTG 57.547 36.000 0.00 0.00 0.00 3.16
2876 6165 7.890127 TGATGGATATGGAACTTGAAGAAACTT 59.110 33.333 0.00 0.00 0.00 2.66
2877 6166 7.405292 TGATGGATATGGAACTTGAAGAAACT 58.595 34.615 0.00 0.00 0.00 2.66
2878 6167 7.630242 TGATGGATATGGAACTTGAAGAAAC 57.370 36.000 0.00 0.00 0.00 2.78
2879 6168 8.827832 AATGATGGATATGGAACTTGAAGAAA 57.172 30.769 0.00 0.00 0.00 2.52
2930 6219 9.920946 ACTATTGTTTTCCTTCATGTACCATAT 57.079 29.630 0.00 0.00 0.00 1.78
2950 6239 8.964420 TTCATAGCTTTTCGGAAAAACTATTG 57.036 30.769 25.42 21.25 32.50 1.90
3037 6326 9.740239 GGTGTATTCGACTCATTACATACTAAA 57.260 33.333 0.00 0.00 0.00 1.85
3088 6377 8.318412 ACTTAGTGATACATGATACACCACAAA 58.682 33.333 0.00 0.00 34.33 2.83
3135 6424 6.389091 TGCACTGTGGCATTCTAATTTTAAG 58.611 36.000 10.21 0.00 39.25 1.85
3144 6433 1.401761 TTGTTGCACTGTGGCATTCT 58.598 45.000 10.21 0.00 44.48 2.40
3149 6438 2.293122 TGAGTTATTGTTGCACTGTGGC 59.707 45.455 10.21 2.73 0.00 5.01
3200 6491 7.244166 TGTTTGGATTGCAGTTTTATTTGTG 57.756 32.000 0.00 0.00 0.00 3.33
3206 6498 9.606631 AAACTTTATGTTTGGATTGCAGTTTTA 57.393 25.926 0.00 0.00 46.08 1.52
3292 6586 0.955428 GAGCATTTGTGGGCGTCTCA 60.955 55.000 0.00 0.00 34.54 3.27
3313 6607 8.186163 TCATATGCAACTTCAAAATGATCTGAC 58.814 33.333 0.00 0.00 0.00 3.51
3315 6609 8.188799 ACTCATATGCAACTTCAAAATGATCTG 58.811 33.333 0.00 0.00 0.00 2.90
3347 6641 5.507482 CCAGATGCACCATCAATTCTCAATC 60.507 44.000 7.83 0.00 42.72 2.67
3356 6650 3.657398 ATTCTCCAGATGCACCATCAA 57.343 42.857 7.83 0.00 42.72 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.