Multiple sequence alignment - TraesCS7D01G434400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G434400 | chr7D | 100.000 | 3755 | 0 | 0 | 1 | 3755 | 554315457 | 554319211 | 0.000000e+00 | 6935.0 |
1 | TraesCS7D01G434400 | chr7D | 90.226 | 133 | 10 | 3 | 684 | 814 | 1526253 | 1526122 | 1.790000e-38 | 171.0 |
2 | TraesCS7D01G434400 | chr7D | 100.000 | 32 | 0 | 0 | 3231 | 3262 | 116468472 | 116468441 | 4.050000e-05 | 60.2 |
3 | TraesCS7D01G434400 | chr7B | 95.096 | 2080 | 80 | 14 | 965 | 3037 | 600597480 | 600595416 | 0.000000e+00 | 3256.0 |
4 | TraesCS7D01G434400 | chr7B | 93.846 | 975 | 52 | 5 | 1 | 968 | 600598484 | 600597511 | 0.000000e+00 | 1461.0 |
5 | TraesCS7D01G434400 | chr7B | 87.184 | 554 | 54 | 10 | 3207 | 3755 | 600595428 | 600594887 | 6.890000e-172 | 614.0 |
6 | TraesCS7D01G434400 | chr7B | 81.395 | 129 | 22 | 2 | 3621 | 3748 | 24062639 | 24062512 | 1.840000e-18 | 104.0 |
7 | TraesCS7D01G434400 | chr7B | 81.301 | 123 | 21 | 2 | 3623 | 3744 | 706794924 | 706794803 | 8.580000e-17 | 99.0 |
8 | TraesCS7D01G434400 | chr3D | 84.134 | 2061 | 255 | 47 | 969 | 2987 | 600188929 | 600186899 | 0.000000e+00 | 1929.0 |
9 | TraesCS7D01G434400 | chr3D | 94.118 | 153 | 7 | 2 | 3038 | 3190 | 15398735 | 15398585 | 8.110000e-57 | 231.0 |
10 | TraesCS7D01G434400 | chr3D | 89.844 | 128 | 12 | 1 | 684 | 811 | 559476750 | 559476876 | 3.000000e-36 | 163.0 |
11 | TraesCS7D01G434400 | chr3D | 88.636 | 132 | 13 | 2 | 684 | 814 | 548541611 | 548541481 | 3.880000e-35 | 159.0 |
12 | TraesCS7D01G434400 | chr3B | 83.639 | 2072 | 231 | 60 | 984 | 2980 | 807374442 | 807372404 | 0.000000e+00 | 1849.0 |
13 | TraesCS7D01G434400 | chr3B | 84.496 | 129 | 16 | 3 | 3402 | 3530 | 497713569 | 497713445 | 1.420000e-24 | 124.0 |
14 | TraesCS7D01G434400 | chr4A | 76.679 | 536 | 121 | 4 | 1128 | 1661 | 738815348 | 738815881 | 1.020000e-75 | 294.0 |
15 | TraesCS7D01G434400 | chr6A | 89.474 | 152 | 15 | 1 | 3036 | 3186 | 23959568 | 23959719 | 1.380000e-44 | 191.0 |
16 | TraesCS7D01G434400 | chr6A | 89.313 | 131 | 13 | 1 | 684 | 814 | 827132 | 827003 | 3.000000e-36 | 163.0 |
17 | TraesCS7D01G434400 | chr6A | 79.762 | 84 | 15 | 2 | 3229 | 3311 | 176992702 | 176992620 | 4.050000e-05 | 60.2 |
18 | TraesCS7D01G434400 | chr1D | 90.152 | 132 | 11 | 2 | 684 | 814 | 37432578 | 37432448 | 1.790000e-38 | 171.0 |
19 | TraesCS7D01G434400 | chr1D | 95.000 | 40 | 1 | 1 | 3221 | 3260 | 438319046 | 438319008 | 1.130000e-05 | 62.1 |
20 | TraesCS7D01G434400 | chr6B | 91.803 | 122 | 8 | 2 | 684 | 804 | 718835980 | 718835860 | 6.450000e-38 | 169.0 |
21 | TraesCS7D01G434400 | chr6B | 78.740 | 127 | 19 | 8 | 3219 | 3341 | 101727598 | 101727720 | 1.120000e-10 | 78.7 |
22 | TraesCS7D01G434400 | chr6B | 80.000 | 90 | 17 | 1 | 3460 | 3549 | 697465283 | 697465371 | 8.710000e-07 | 65.8 |
23 | TraesCS7D01G434400 | chr6B | 80.000 | 90 | 17 | 1 | 3460 | 3549 | 697537723 | 697537811 | 8.710000e-07 | 65.8 |
24 | TraesCS7D01G434400 | chr4D | 89.922 | 129 | 11 | 2 | 684 | 811 | 3304604 | 3304731 | 8.340000e-37 | 165.0 |
25 | TraesCS7D01G434400 | chr2D | 89.844 | 128 | 12 | 1 | 684 | 811 | 204265660 | 204265786 | 3.000000e-36 | 163.0 |
26 | TraesCS7D01G434400 | chr2D | 97.059 | 34 | 1 | 0 | 3229 | 3262 | 628612464 | 628612497 | 1.460000e-04 | 58.4 |
27 | TraesCS7D01G434400 | chr5B | 79.397 | 199 | 31 | 5 | 3554 | 3744 | 490866305 | 490866109 | 8.460000e-27 | 132.0 |
28 | TraesCS7D01G434400 | chr5B | 77.000 | 200 | 36 | 6 | 3554 | 3744 | 490864265 | 490864067 | 5.130000e-19 | 106.0 |
29 | TraesCS7D01G434400 | chr3A | 84.921 | 126 | 19 | 0 | 3622 | 3747 | 621236293 | 621236418 | 1.090000e-25 | 128.0 |
30 | TraesCS7D01G434400 | chr5D | 83.721 | 129 | 16 | 5 | 3621 | 3746 | 408974913 | 408974787 | 2.370000e-22 | 117.0 |
31 | TraesCS7D01G434400 | chr5A | 83.193 | 119 | 16 | 4 | 3624 | 3740 | 704341556 | 704341440 | 5.130000e-19 | 106.0 |
32 | TraesCS7D01G434400 | chr6D | 100.000 | 34 | 0 | 0 | 3229 | 3262 | 263045188 | 263045221 | 3.130000e-06 | 63.9 |
33 | TraesCS7D01G434400 | chr6D | 89.362 | 47 | 4 | 1 | 3219 | 3265 | 25856585 | 25856540 | 1.460000e-04 | 58.4 |
34 | TraesCS7D01G434400 | chr2B | 80.488 | 82 | 12 | 4 | 3232 | 3311 | 555519878 | 555519799 | 4.050000e-05 | 60.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G434400 | chr7D | 554315457 | 554319211 | 3754 | False | 6935 | 6935 | 100.000 | 1 | 3755 | 1 | chr7D.!!$F1 | 3754 |
1 | TraesCS7D01G434400 | chr7B | 600594887 | 600598484 | 3597 | True | 1777 | 3256 | 92.042 | 1 | 3755 | 3 | chr7B.!!$R3 | 3754 |
2 | TraesCS7D01G434400 | chr3D | 600186899 | 600188929 | 2030 | True | 1929 | 1929 | 84.134 | 969 | 2987 | 1 | chr3D.!!$R3 | 2018 |
3 | TraesCS7D01G434400 | chr3B | 807372404 | 807374442 | 2038 | True | 1849 | 1849 | 83.639 | 984 | 2980 | 1 | chr3B.!!$R2 | 1996 |
4 | TraesCS7D01G434400 | chr4A | 738815348 | 738815881 | 533 | False | 294 | 294 | 76.679 | 1128 | 1661 | 1 | chr4A.!!$F1 | 533 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
234 | 236 | 0.184211 | TGCAGATCCACATCCATGGG | 59.816 | 55.0 | 13.02 | 0.00 | 40.49 | 4.00 | F |
238 | 240 | 0.250467 | GATCCACATCCATGGGACGG | 60.250 | 60.0 | 13.02 | 7.95 | 40.49 | 4.79 | F |
338 | 341 | 0.444651 | CGTTTTAGCGAATTCGGCCA | 59.555 | 50.0 | 27.78 | 8.01 | 40.23 | 5.36 | F |
384 | 387 | 0.456628 | TGCTACACCGCGCTATAACA | 59.543 | 50.0 | 5.56 | 0.00 | 0.00 | 2.41 | F |
1725 | 1810 | 0.455005 | AGGTAGCTAAGTCGAACGGC | 59.545 | 55.0 | 0.00 | 0.00 | 0.00 | 5.68 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1706 | 1791 | 0.455005 | GCCGTTCGACTTAGCTACCT | 59.545 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 | R |
1707 | 1792 | 0.455005 | AGCCGTTCGACTTAGCTACC | 59.545 | 55.000 | 0.00 | 0.00 | 30.46 | 3.18 | R |
1721 | 1806 | 1.507140 | TCATCATCCCCTTAAGCCGT | 58.493 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 | R |
2364 | 2472 | 1.219124 | GTCGATCAGCTTCTGGCCA | 59.781 | 57.895 | 4.71 | 4.71 | 43.05 | 5.36 | R |
3178 | 3338 | 0.033920 | GACTCACGGGGGTTTTACGT | 59.966 | 55.000 | 0.00 | 0.00 | 42.17 | 3.57 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
48 | 49 | 4.641989 | AGATTGTTCTATGGTTGGTGCATC | 59.358 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
134 | 136 | 2.047830 | GGGTCGGAGGGAGTATCAAAT | 58.952 | 52.381 | 0.00 | 0.00 | 36.25 | 2.32 |
163 | 165 | 3.785982 | TGGCGACACCTTAGAGCA | 58.214 | 55.556 | 0.00 | 0.00 | 40.22 | 4.26 |
214 | 216 | 4.275196 | CAGTTGATGGTGAGCATCTTATGG | 59.725 | 45.833 | 23.14 | 7.59 | 34.92 | 2.74 |
234 | 236 | 0.184211 | TGCAGATCCACATCCATGGG | 59.816 | 55.000 | 13.02 | 0.00 | 40.49 | 4.00 |
238 | 240 | 0.250467 | GATCCACATCCATGGGACGG | 60.250 | 60.000 | 13.02 | 7.95 | 40.49 | 4.79 |
250 | 252 | 4.072131 | CCATGGGACGGATTCGATTTTAT | 58.928 | 43.478 | 2.85 | 0.00 | 40.11 | 1.40 |
338 | 341 | 0.444651 | CGTTTTAGCGAATTCGGCCA | 59.555 | 50.000 | 27.78 | 8.01 | 40.23 | 5.36 |
384 | 387 | 0.456628 | TGCTACACCGCGCTATAACA | 59.543 | 50.000 | 5.56 | 0.00 | 0.00 | 2.41 |
391 | 394 | 2.096909 | CACCGCGCTATAACATTGTAGC | 60.097 | 50.000 | 5.56 | 9.62 | 42.34 | 3.58 |
392 | 395 | 2.131972 | CCGCGCTATAACATTGTAGCA | 58.868 | 47.619 | 17.27 | 0.00 | 44.91 | 3.49 |
407 | 410 | 6.759356 | ACATTGTAGCATGTAACGTTATAGCA | 59.241 | 34.615 | 22.70 | 13.52 | 0.00 | 3.49 |
414 | 417 | 6.226988 | CATGTAACGTTATAGCATGCATGA | 57.773 | 37.500 | 30.64 | 10.92 | 34.79 | 3.07 |
443 | 446 | 4.798574 | AGAAACAGAAAATAAGGCAAGCG | 58.201 | 39.130 | 0.00 | 0.00 | 0.00 | 4.68 |
446 | 449 | 2.095059 | ACAGAAAATAAGGCAAGCGCAG | 60.095 | 45.455 | 11.47 | 2.01 | 41.24 | 5.18 |
544 | 547 | 2.233922 | ACCACAACCCTAGTTCTCATCG | 59.766 | 50.000 | 0.00 | 0.00 | 32.45 | 3.84 |
564 | 567 | 0.598562 | TCTATTCCGCCGAGATGAGC | 59.401 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
639 | 642 | 4.156622 | CGCGAGCGACGGTAGTGA | 62.157 | 66.667 | 12.58 | 0.00 | 42.83 | 3.41 |
680 | 683 | 2.815211 | CACCTGGCGGTCACATCG | 60.815 | 66.667 | 0.00 | 0.00 | 43.24 | 3.84 |
695 | 698 | 7.016466 | CGGTCACATCGTCTATTTCTAGATAC | 58.984 | 42.308 | 0.00 | 0.00 | 36.40 | 2.24 |
701 | 704 | 9.613957 | ACATCGTCTATTTCTAGATACATTTCG | 57.386 | 33.333 | 0.00 | 0.00 | 36.40 | 3.46 |
814 | 819 | 6.007936 | TGTAGCGTGCTATGTTTTTCATTT | 57.992 | 33.333 | 4.68 | 0.00 | 37.91 | 2.32 |
979 | 1021 | 0.611200 | TAAGCTGCCGGTTCTAGCAA | 59.389 | 50.000 | 19.19 | 8.28 | 38.82 | 3.91 |
1125 | 1197 | 6.199393 | CCTGATCATGAATTATATGCATGCG | 58.801 | 40.000 | 14.09 | 0.00 | 39.30 | 4.73 |
1447 | 1519 | 1.225704 | GGTGGATGCCCAGAAGGAG | 59.774 | 63.158 | 0.00 | 0.00 | 44.55 | 3.69 |
1459 | 1531 | 1.743252 | GAAGGAGCTCAAGGCCGTG | 60.743 | 63.158 | 17.19 | 13.08 | 43.05 | 4.94 |
1513 | 1585 | 1.153939 | CAAGAGTGGCCTCGAGACG | 60.154 | 63.158 | 15.71 | 0.00 | 42.86 | 4.18 |
1574 | 1646 | 2.048127 | GCGCCAACGTCTTCCTCT | 60.048 | 61.111 | 0.00 | 0.00 | 42.83 | 3.69 |
1615 | 1687 | 1.497278 | CAACGAAGCCACGGATGTG | 59.503 | 57.895 | 0.00 | 0.00 | 46.00 | 3.21 |
1633 | 1705 | 4.838152 | GATCTTGGCAGCGCGGGA | 62.838 | 66.667 | 8.83 | 0.00 | 0.00 | 5.14 |
1677 | 1762 | 4.054359 | AGGACTCAGATCACAAGGTAGT | 57.946 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
1684 | 1769 | 6.151985 | ACTCAGATCACAAGGTAGTTACTCTG | 59.848 | 42.308 | 0.00 | 0.00 | 0.00 | 3.35 |
1696 | 1781 | 7.379750 | AGGTAGTTACTCTGTCTAGCTTTTTG | 58.620 | 38.462 | 0.00 | 0.00 | 38.72 | 2.44 |
1697 | 1782 | 7.015389 | AGGTAGTTACTCTGTCTAGCTTTTTGT | 59.985 | 37.037 | 0.00 | 0.00 | 38.72 | 2.83 |
1698 | 1783 | 7.656542 | GGTAGTTACTCTGTCTAGCTTTTTGTT | 59.343 | 37.037 | 0.00 | 0.00 | 31.93 | 2.83 |
1699 | 1784 | 7.716768 | AGTTACTCTGTCTAGCTTTTTGTTC | 57.283 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1700 | 1785 | 6.706716 | AGTTACTCTGTCTAGCTTTTTGTTCC | 59.293 | 38.462 | 0.00 | 0.00 | 0.00 | 3.62 |
1701 | 1786 | 4.058817 | ACTCTGTCTAGCTTTTTGTTCCG | 58.941 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
1702 | 1787 | 4.202223 | ACTCTGTCTAGCTTTTTGTTCCGA | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 4.55 |
1703 | 1788 | 4.894784 | TCTGTCTAGCTTTTTGTTCCGAT | 58.105 | 39.130 | 0.00 | 0.00 | 0.00 | 4.18 |
1704 | 1789 | 4.690748 | TCTGTCTAGCTTTTTGTTCCGATG | 59.309 | 41.667 | 0.00 | 0.00 | 0.00 | 3.84 |
1706 | 1791 | 5.060506 | TGTCTAGCTTTTTGTTCCGATGAA | 58.939 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
1707 | 1792 | 5.179368 | TGTCTAGCTTTTTGTTCCGATGAAG | 59.821 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1708 | 1793 | 3.923017 | AGCTTTTTGTTCCGATGAAGG | 57.077 | 42.857 | 0.00 | 0.00 | 0.00 | 3.46 |
1719 | 1804 | 2.617308 | TCCGATGAAGGTAGCTAAGTCG | 59.383 | 50.000 | 12.86 | 12.86 | 0.00 | 4.18 |
1721 | 1806 | 3.066342 | CCGATGAAGGTAGCTAAGTCGAA | 59.934 | 47.826 | 18.41 | 0.00 | 0.00 | 3.71 |
1725 | 1810 | 0.455005 | AGGTAGCTAAGTCGAACGGC | 59.545 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
1732 | 1818 | 2.537401 | CTAAGTCGAACGGCTTAAGGG | 58.463 | 52.381 | 18.99 | 7.17 | 41.09 | 3.95 |
1781 | 1882 | 0.746923 | TGCCATTGCTAGCTGCTCAG | 60.747 | 55.000 | 17.23 | 3.60 | 43.37 | 3.35 |
2431 | 2539 | 1.379576 | AAGCTCATGGCCTCCAAGC | 60.380 | 57.895 | 3.32 | 8.10 | 43.05 | 4.01 |
2484 | 2592 | 1.908793 | CGCCTCCGATACCTCCCAT | 60.909 | 63.158 | 0.00 | 0.00 | 36.29 | 4.00 |
2877 | 3025 | 6.150809 | CGCCCCTAAAATCCTAGTACTAGTAG | 59.849 | 46.154 | 24.84 | 18.69 | 0.00 | 2.57 |
2906 | 3062 | 7.120873 | CCATCCAATATCCATCTGTTTCATCTC | 59.879 | 40.741 | 0.00 | 0.00 | 0.00 | 2.75 |
2991 | 3150 | 2.597340 | CCCCCATGGATGCGTCTT | 59.403 | 61.111 | 15.22 | 0.00 | 35.39 | 3.01 |
3008 | 3168 | 6.738114 | TGCGTCTTCATTCTTTTCTCATTTT | 58.262 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3029 | 3189 | 9.039870 | CATTTTTGTATTTCAACCAGCTTGTTA | 57.960 | 29.630 | 2.38 | 0.00 | 35.61 | 2.41 |
3031 | 3191 | 9.606631 | TTTTTGTATTTCAACCAGCTTGTTAAT | 57.393 | 25.926 | 2.38 | 3.72 | 35.61 | 1.40 |
3037 | 3197 | 8.601845 | ATTTCAACCAGCTTGTTAATTTTACC | 57.398 | 30.769 | 2.38 | 0.00 | 0.00 | 2.85 |
3038 | 3198 | 5.764131 | TCAACCAGCTTGTTAATTTTACCG | 58.236 | 37.500 | 2.38 | 0.00 | 0.00 | 4.02 |
3039 | 3199 | 4.776795 | ACCAGCTTGTTAATTTTACCGG | 57.223 | 40.909 | 0.00 | 0.00 | 0.00 | 5.28 |
3040 | 3200 | 4.146564 | ACCAGCTTGTTAATTTTACCGGT | 58.853 | 39.130 | 13.98 | 13.98 | 0.00 | 5.28 |
3041 | 3201 | 5.315348 | ACCAGCTTGTTAATTTTACCGGTA | 58.685 | 37.500 | 11.16 | 11.16 | 0.00 | 4.02 |
3042 | 3202 | 5.769162 | ACCAGCTTGTTAATTTTACCGGTAA | 59.231 | 36.000 | 23.17 | 23.17 | 0.00 | 2.85 |
3043 | 3203 | 6.434965 | ACCAGCTTGTTAATTTTACCGGTAAT | 59.565 | 34.615 | 27.03 | 15.29 | 0.00 | 1.89 |
3044 | 3204 | 6.750039 | CCAGCTTGTTAATTTTACCGGTAATG | 59.250 | 38.462 | 27.03 | 16.54 | 0.00 | 1.90 |
3045 | 3205 | 6.252655 | CAGCTTGTTAATTTTACCGGTAATGC | 59.747 | 38.462 | 27.03 | 16.17 | 0.00 | 3.56 |
3046 | 3206 | 6.152154 | AGCTTGTTAATTTTACCGGTAATGCT | 59.848 | 34.615 | 27.03 | 17.96 | 0.00 | 3.79 |
3047 | 3207 | 7.337436 | AGCTTGTTAATTTTACCGGTAATGCTA | 59.663 | 33.333 | 27.03 | 14.99 | 0.00 | 3.49 |
3048 | 3208 | 7.642586 | GCTTGTTAATTTTACCGGTAATGCTAG | 59.357 | 37.037 | 27.03 | 17.66 | 0.00 | 3.42 |
3049 | 3209 | 8.789825 | TTGTTAATTTTACCGGTAATGCTAGA | 57.210 | 30.769 | 27.03 | 8.96 | 0.00 | 2.43 |
3050 | 3210 | 8.967664 | TGTTAATTTTACCGGTAATGCTAGAT | 57.032 | 30.769 | 27.03 | 11.65 | 0.00 | 1.98 |
3051 | 3211 | 8.832521 | TGTTAATTTTACCGGTAATGCTAGATG | 58.167 | 33.333 | 27.03 | 0.00 | 0.00 | 2.90 |
3052 | 3212 | 5.941948 | ATTTTACCGGTAATGCTAGATGC | 57.058 | 39.130 | 27.03 | 0.00 | 43.25 | 3.91 |
3061 | 3221 | 2.279517 | GCTAGATGCACGGACGGG | 60.280 | 66.667 | 0.00 | 0.00 | 42.31 | 5.28 |
3062 | 3222 | 2.279517 | CTAGATGCACGGACGGGC | 60.280 | 66.667 | 12.67 | 12.67 | 46.35 | 6.13 |
3063 | 3223 | 3.792053 | CTAGATGCACGGACGGGCC | 62.792 | 68.421 | 16.99 | 0.00 | 45.41 | 5.80 |
3065 | 3225 | 2.914756 | TAGATGCACGGACGGGCCTA | 62.915 | 60.000 | 16.99 | 8.55 | 45.41 | 3.93 |
3066 | 3226 | 3.161450 | ATGCACGGACGGGCCTAT | 61.161 | 61.111 | 16.99 | 0.85 | 45.41 | 2.57 |
3067 | 3227 | 2.660258 | GATGCACGGACGGGCCTATT | 62.660 | 60.000 | 16.99 | 0.00 | 45.41 | 1.73 |
3068 | 3228 | 1.404479 | ATGCACGGACGGGCCTATTA | 61.404 | 55.000 | 16.99 | 0.00 | 45.41 | 0.98 |
3069 | 3229 | 1.593479 | GCACGGACGGGCCTATTAC | 60.593 | 63.158 | 7.89 | 0.00 | 38.90 | 1.89 |
3070 | 3230 | 1.817881 | CACGGACGGGCCTATTACA | 59.182 | 57.895 | 0.84 | 0.00 | 0.00 | 2.41 |
3071 | 3231 | 0.249322 | CACGGACGGGCCTATTACAG | 60.249 | 60.000 | 0.84 | 0.00 | 0.00 | 2.74 |
3090 | 3250 | 8.773404 | ATTACAGGATTTACGGAATAGCATAC | 57.227 | 34.615 | 0.00 | 0.00 | 0.00 | 2.39 |
3091 | 3251 | 5.227908 | ACAGGATTTACGGAATAGCATACG | 58.772 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
3092 | 3252 | 5.221382 | ACAGGATTTACGGAATAGCATACGT | 60.221 | 40.000 | 0.00 | 0.00 | 42.71 | 3.57 |
3093 | 3253 | 5.118664 | CAGGATTTACGGAATAGCATACGTG | 59.881 | 44.000 | 0.00 | 0.00 | 40.12 | 4.49 |
3094 | 3254 | 4.387862 | GGATTTACGGAATAGCATACGTGG | 59.612 | 45.833 | 0.00 | 0.00 | 40.12 | 4.94 |
3095 | 3255 | 3.374220 | TTACGGAATAGCATACGTGGG | 57.626 | 47.619 | 0.00 | 0.00 | 40.12 | 4.61 |
3096 | 3256 | 0.249741 | ACGGAATAGCATACGTGGGC | 60.250 | 55.000 | 0.00 | 0.86 | 38.24 | 5.36 |
3097 | 3257 | 0.249699 | CGGAATAGCATACGTGGGCA | 60.250 | 55.000 | 14.46 | 2.87 | 0.00 | 5.36 |
3098 | 3258 | 1.808512 | CGGAATAGCATACGTGGGCAA | 60.809 | 52.381 | 14.46 | 0.00 | 0.00 | 4.52 |
3099 | 3259 | 2.504367 | GGAATAGCATACGTGGGCAAT | 58.496 | 47.619 | 14.46 | 1.64 | 0.00 | 3.56 |
3100 | 3260 | 2.484264 | GGAATAGCATACGTGGGCAATC | 59.516 | 50.000 | 14.46 | 9.25 | 0.00 | 2.67 |
3101 | 3261 | 1.795768 | ATAGCATACGTGGGCAATCG | 58.204 | 50.000 | 14.46 | 0.00 | 0.00 | 3.34 |
3102 | 3262 | 0.249699 | TAGCATACGTGGGCAATCGG | 60.250 | 55.000 | 14.46 | 0.00 | 0.00 | 4.18 |
3103 | 3263 | 2.542907 | GCATACGTGGGCAATCGGG | 61.543 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
3104 | 3264 | 1.145156 | CATACGTGGGCAATCGGGA | 59.855 | 57.895 | 0.00 | 0.00 | 0.00 | 5.14 |
3105 | 3265 | 0.250295 | CATACGTGGGCAATCGGGAT | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3106 | 3266 | 0.472471 | ATACGTGGGCAATCGGGATT | 59.528 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3108 | 3268 | 2.480610 | CGTGGGCAATCGGGATTGG | 61.481 | 63.158 | 19.75 | 5.37 | 46.14 | 3.16 |
3109 | 3269 | 2.127232 | GTGGGCAATCGGGATTGGG | 61.127 | 63.158 | 19.75 | 0.00 | 46.14 | 4.12 |
3110 | 3270 | 2.521708 | GGGCAATCGGGATTGGGG | 60.522 | 66.667 | 19.75 | 0.00 | 46.14 | 4.96 |
3111 | 3271 | 2.600731 | GGCAATCGGGATTGGGGA | 59.399 | 61.111 | 19.75 | 0.00 | 46.14 | 4.81 |
3112 | 3272 | 1.076339 | GGCAATCGGGATTGGGGAA | 60.076 | 57.895 | 19.75 | 0.00 | 46.14 | 3.97 |
3113 | 3273 | 1.109323 | GGCAATCGGGATTGGGGAAG | 61.109 | 60.000 | 19.75 | 0.00 | 46.14 | 3.46 |
3114 | 3274 | 0.106719 | GCAATCGGGATTGGGGAAGA | 60.107 | 55.000 | 19.75 | 0.00 | 46.14 | 2.87 |
3115 | 3275 | 1.972872 | CAATCGGGATTGGGGAAGAG | 58.027 | 55.000 | 12.51 | 0.00 | 43.25 | 2.85 |
3116 | 3276 | 0.846693 | AATCGGGATTGGGGAAGAGG | 59.153 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3117 | 3277 | 1.062488 | ATCGGGATTGGGGAAGAGGG | 61.062 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3118 | 3278 | 1.692749 | CGGGATTGGGGAAGAGGGA | 60.693 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
3119 | 3279 | 1.700042 | CGGGATTGGGGAAGAGGGAG | 61.700 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3120 | 3280 | 1.534203 | GGATTGGGGAAGAGGGAGC | 59.466 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
3121 | 3281 | 1.281925 | GGATTGGGGAAGAGGGAGCA | 61.282 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3122 | 3282 | 0.849417 | GATTGGGGAAGAGGGAGCAT | 59.151 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
3123 | 3283 | 0.554792 | ATTGGGGAAGAGGGAGCATG | 59.445 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
3124 | 3284 | 1.574526 | TTGGGGAAGAGGGAGCATGG | 61.575 | 60.000 | 0.00 | 0.00 | 0.00 | 3.66 |
3125 | 3285 | 2.761465 | GGGGAAGAGGGAGCATGGG | 61.761 | 68.421 | 0.00 | 0.00 | 0.00 | 4.00 |
3126 | 3286 | 2.194326 | GGAAGAGGGAGCATGGGC | 59.806 | 66.667 | 0.00 | 0.00 | 41.61 | 5.36 |
3127 | 3287 | 2.194326 | GAAGAGGGAGCATGGGCC | 59.806 | 66.667 | 0.00 | 0.00 | 42.56 | 5.80 |
3128 | 3288 | 3.424105 | AAGAGGGAGCATGGGCCC | 61.424 | 66.667 | 17.59 | 17.59 | 45.04 | 5.80 |
3144 | 3304 | 4.751820 | CCCACCCCCGCCGAAAAT | 62.752 | 66.667 | 0.00 | 0.00 | 0.00 | 1.82 |
3145 | 3305 | 2.272797 | CCACCCCCGCCGAAAATA | 59.727 | 61.111 | 0.00 | 0.00 | 0.00 | 1.40 |
3146 | 3306 | 1.378778 | CCACCCCCGCCGAAAATAA | 60.379 | 57.895 | 0.00 | 0.00 | 0.00 | 1.40 |
3147 | 3307 | 1.381165 | CCACCCCCGCCGAAAATAAG | 61.381 | 60.000 | 0.00 | 0.00 | 0.00 | 1.73 |
3148 | 3308 | 1.077285 | ACCCCCGCCGAAAATAAGG | 60.077 | 57.895 | 0.00 | 0.00 | 0.00 | 2.69 |
3149 | 3309 | 1.826487 | CCCCCGCCGAAAATAAGGG | 60.826 | 63.158 | 0.00 | 0.00 | 41.68 | 3.95 |
3150 | 3310 | 3.836151 | CCCGCCGAAAATAAGGGG | 58.164 | 61.111 | 0.00 | 0.00 | 38.44 | 4.79 |
3171 | 3331 | 6.413783 | GGGGGAGAGAGATTAGTTTAGAAG | 57.586 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
3172 | 3332 | 6.137559 | GGGGGAGAGAGATTAGTTTAGAAGA | 58.862 | 44.000 | 0.00 | 0.00 | 0.00 | 2.87 |
3173 | 3333 | 6.612049 | GGGGGAGAGAGATTAGTTTAGAAGAA | 59.388 | 42.308 | 0.00 | 0.00 | 0.00 | 2.52 |
3174 | 3334 | 7.125963 | GGGGGAGAGAGATTAGTTTAGAAGAAA | 59.874 | 40.741 | 0.00 | 0.00 | 0.00 | 2.52 |
3175 | 3335 | 8.541234 | GGGGAGAGAGATTAGTTTAGAAGAAAA | 58.459 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
3181 | 3341 | 9.930693 | AGAGATTAGTTTAGAAGAAAATCACGT | 57.069 | 29.630 | 0.00 | 0.00 | 0.00 | 4.49 |
3188 | 3348 | 8.347771 | AGTTTAGAAGAAAATCACGTAAAACCC | 58.652 | 33.333 | 0.00 | 0.00 | 0.00 | 4.11 |
3189 | 3349 | 5.700722 | AGAAGAAAATCACGTAAAACCCC | 57.299 | 39.130 | 0.00 | 0.00 | 0.00 | 4.95 |
3190 | 3350 | 4.521639 | AGAAGAAAATCACGTAAAACCCCC | 59.478 | 41.667 | 0.00 | 0.00 | 0.00 | 5.40 |
3191 | 3351 | 2.815503 | AGAAAATCACGTAAAACCCCCG | 59.184 | 45.455 | 0.00 | 0.00 | 0.00 | 5.73 |
3192 | 3352 | 2.275134 | AAATCACGTAAAACCCCCGT | 57.725 | 45.000 | 0.00 | 0.00 | 34.71 | 5.28 |
3196 | 3356 | 2.135890 | ACGTAAAACCCCCGTGAGT | 58.864 | 52.632 | 0.00 | 0.00 | 32.86 | 3.41 |
3197 | 3357 | 0.033920 | ACGTAAAACCCCCGTGAGTC | 59.966 | 55.000 | 0.00 | 0.00 | 32.86 | 3.36 |
3198 | 3358 | 0.319405 | CGTAAAACCCCCGTGAGTCT | 59.681 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
3199 | 3359 | 1.545582 | CGTAAAACCCCCGTGAGTCTA | 59.454 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
3200 | 3360 | 2.416431 | CGTAAAACCCCCGTGAGTCTAG | 60.416 | 54.545 | 0.00 | 0.00 | 0.00 | 2.43 |
3201 | 3361 | 0.981943 | AAAACCCCCGTGAGTCTAGG | 59.018 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3202 | 3362 | 0.115745 | AAACCCCCGTGAGTCTAGGA | 59.884 | 55.000 | 6.10 | 0.00 | 0.00 | 2.94 |
3203 | 3363 | 0.338814 | AACCCCCGTGAGTCTAGGAT | 59.661 | 55.000 | 6.10 | 0.00 | 0.00 | 3.24 |
3204 | 3364 | 0.338814 | ACCCCCGTGAGTCTAGGATT | 59.661 | 55.000 | 6.10 | 0.00 | 0.00 | 3.01 |
3205 | 3365 | 1.572415 | ACCCCCGTGAGTCTAGGATTA | 59.428 | 52.381 | 6.10 | 0.00 | 0.00 | 1.75 |
3206 | 3366 | 2.179424 | ACCCCCGTGAGTCTAGGATTAT | 59.821 | 50.000 | 6.10 | 0.00 | 0.00 | 1.28 |
3207 | 3367 | 3.240302 | CCCCCGTGAGTCTAGGATTATT | 58.760 | 50.000 | 6.10 | 0.00 | 0.00 | 1.40 |
3208 | 3368 | 3.006967 | CCCCCGTGAGTCTAGGATTATTG | 59.993 | 52.174 | 6.10 | 0.00 | 0.00 | 1.90 |
3209 | 3369 | 3.641906 | CCCCGTGAGTCTAGGATTATTGT | 59.358 | 47.826 | 6.10 | 0.00 | 0.00 | 2.71 |
3210 | 3370 | 4.101119 | CCCCGTGAGTCTAGGATTATTGTT | 59.899 | 45.833 | 6.10 | 0.00 | 0.00 | 2.83 |
3211 | 3371 | 5.303589 | CCCCGTGAGTCTAGGATTATTGTTA | 59.696 | 44.000 | 6.10 | 0.00 | 0.00 | 2.41 |
3212 | 3372 | 6.014499 | CCCCGTGAGTCTAGGATTATTGTTAT | 60.014 | 42.308 | 6.10 | 0.00 | 0.00 | 1.89 |
3213 | 3373 | 7.442656 | CCCGTGAGTCTAGGATTATTGTTATT | 58.557 | 38.462 | 6.10 | 0.00 | 0.00 | 1.40 |
3214 | 3374 | 7.931948 | CCCGTGAGTCTAGGATTATTGTTATTT | 59.068 | 37.037 | 6.10 | 0.00 | 0.00 | 1.40 |
3215 | 3375 | 9.326413 | CCGTGAGTCTAGGATTATTGTTATTTT | 57.674 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
3256 | 3416 | 3.636300 | TCATGCTTGCCAACTAAACTTGT | 59.364 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
3265 | 3425 | 3.813166 | CCAACTAAACTTGTCATCCACGT | 59.187 | 43.478 | 0.00 | 0.00 | 0.00 | 4.49 |
3266 | 3426 | 4.319477 | CCAACTAAACTTGTCATCCACGTG | 60.319 | 45.833 | 9.08 | 9.08 | 0.00 | 4.49 |
3273 | 3433 | 3.245797 | CTTGTCATCCACGTGTCACTAG | 58.754 | 50.000 | 15.65 | 7.49 | 0.00 | 2.57 |
3276 | 3436 | 3.509967 | TGTCATCCACGTGTCACTAGAAT | 59.490 | 43.478 | 15.65 | 0.00 | 0.00 | 2.40 |
3283 | 3443 | 1.732259 | CGTGTCACTAGAATTGCCACC | 59.268 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
3289 | 3449 | 4.220602 | GTCACTAGAATTGCCACCCAAAAT | 59.779 | 41.667 | 0.00 | 0.00 | 36.92 | 1.82 |
3290 | 3450 | 4.220382 | TCACTAGAATTGCCACCCAAAATG | 59.780 | 41.667 | 0.00 | 0.00 | 36.92 | 2.32 |
3298 | 3462 | 3.737850 | TGCCACCCAAAATGTTTGATTC | 58.262 | 40.909 | 2.30 | 0.00 | 0.00 | 2.52 |
3305 | 3469 | 3.371591 | CCAAAATGTTTGATTCGCCATGG | 59.628 | 43.478 | 7.63 | 7.63 | 0.00 | 3.66 |
3314 | 3478 | 1.002468 | GATTCGCCATGGTCAAATCCG | 60.002 | 52.381 | 14.67 | 6.47 | 0.00 | 4.18 |
3315 | 3479 | 0.035915 | TTCGCCATGGTCAAATCCGA | 60.036 | 50.000 | 14.67 | 8.96 | 0.00 | 4.55 |
3318 | 3482 | 1.467374 | CGCCATGGTCAAATCCGAAAC | 60.467 | 52.381 | 14.67 | 0.00 | 0.00 | 2.78 |
3339 | 3503 | 0.760572 | TTCGGGATTTATCGGGGTCC | 59.239 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
3352 | 3516 | 1.539827 | CGGGGTCCTTGTTGAAATCAC | 59.460 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
3354 | 3518 | 3.558321 | CGGGGTCCTTGTTGAAATCACTA | 60.558 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
3394 | 3558 | 1.665735 | CGGTGTTCATTTCGGCCAAAG | 60.666 | 52.381 | 2.24 | 0.00 | 0.00 | 2.77 |
3396 | 3560 | 1.611491 | GTGTTCATTTCGGCCAAAGGA | 59.389 | 47.619 | 2.24 | 7.23 | 32.93 | 3.36 |
3397 | 3561 | 2.231235 | GTGTTCATTTCGGCCAAAGGAT | 59.769 | 45.455 | 13.27 | 0.00 | 34.80 | 3.24 |
3398 | 3562 | 2.230992 | TGTTCATTTCGGCCAAAGGATG | 59.769 | 45.455 | 13.27 | 5.79 | 34.80 | 3.51 |
3400 | 3564 | 2.091541 | TCATTTCGGCCAAAGGATGAC | 58.908 | 47.619 | 2.24 | 0.00 | 29.75 | 3.06 |
3401 | 3565 | 1.134946 | CATTTCGGCCAAAGGATGACC | 59.865 | 52.381 | 2.24 | 0.00 | 0.00 | 4.02 |
3402 | 3566 | 0.111446 | TTTCGGCCAAAGGATGACCA | 59.889 | 50.000 | 2.24 | 0.00 | 38.94 | 4.02 |
3403 | 3567 | 0.111446 | TTCGGCCAAAGGATGACCAA | 59.889 | 50.000 | 2.24 | 0.00 | 38.94 | 3.67 |
3404 | 3568 | 0.111446 | TCGGCCAAAGGATGACCAAA | 59.889 | 50.000 | 2.24 | 0.00 | 38.94 | 3.28 |
3405 | 3569 | 0.527565 | CGGCCAAAGGATGACCAAAG | 59.472 | 55.000 | 2.24 | 0.00 | 38.94 | 2.77 |
3406 | 3570 | 0.897621 | GGCCAAAGGATGACCAAAGG | 59.102 | 55.000 | 0.00 | 0.00 | 38.94 | 3.11 |
3407 | 3571 | 1.549950 | GGCCAAAGGATGACCAAAGGA | 60.550 | 52.381 | 0.00 | 0.00 | 38.94 | 3.36 |
3408 | 3572 | 1.546029 | GCCAAAGGATGACCAAAGGAC | 59.454 | 52.381 | 0.00 | 0.00 | 38.94 | 3.85 |
3409 | 3573 | 2.171003 | CCAAAGGATGACCAAAGGACC | 58.829 | 52.381 | 0.00 | 0.00 | 38.94 | 4.46 |
3410 | 3574 | 1.812571 | CAAAGGATGACCAAAGGACCG | 59.187 | 52.381 | 0.00 | 0.00 | 38.94 | 4.79 |
3413 | 3577 | 1.702957 | AGGATGACCAAAGGACCGAAA | 59.297 | 47.619 | 0.00 | 0.00 | 38.94 | 3.46 |
3418 | 3582 | 2.888414 | TGACCAAAGGACCGAAATTTCC | 59.112 | 45.455 | 12.54 | 0.00 | 0.00 | 3.13 |
3425 | 3589 | 3.146847 | AGGACCGAAATTTCCACTTGAC | 58.853 | 45.455 | 12.54 | 0.00 | 33.92 | 3.18 |
3448 | 3612 | 8.085909 | TGACTTTGACTGAGATACAACGATTTA | 58.914 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3450 | 3614 | 9.088512 | ACTTTGACTGAGATACAACGATTTATC | 57.911 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
3502 | 3666 | 9.632807 | GAATTTATGTGTACTACCAAAATTGCA | 57.367 | 29.630 | 14.84 | 0.00 | 34.97 | 4.08 |
3503 | 3667 | 9.988815 | AATTTATGTGTACTACCAAAATTGCAA | 57.011 | 25.926 | 0.00 | 0.00 | 34.23 | 4.08 |
3508 | 3672 | 9.988815 | ATGTGTACTACCAAAATTGCAAAAATA | 57.011 | 25.926 | 1.71 | 0.00 | 0.00 | 1.40 |
3540 | 3704 | 8.407064 | ACCGAAACAAAATTATTTCAGTGTGTA | 58.593 | 29.630 | 9.27 | 0.00 | 35.02 | 2.90 |
3553 | 3717 | 3.985279 | TCAGTGTGTACCGAAATTTCTCG | 59.015 | 43.478 | 15.92 | 8.34 | 38.58 | 4.04 |
3570 | 3734 | 0.178767 | TCGGATTCCTGGACTGCATG | 59.821 | 55.000 | 6.39 | 0.00 | 0.00 | 4.06 |
3601 | 3765 | 4.090761 | TGGAAGGATTGTCCATATGCTC | 57.909 | 45.455 | 0.00 | 0.00 | 40.33 | 4.26 |
3603 | 3767 | 4.079844 | TGGAAGGATTGTCCATATGCTCAA | 60.080 | 41.667 | 11.30 | 11.30 | 40.33 | 3.02 |
3606 | 3770 | 5.057843 | AGGATTGTCCATATGCTCAACAT | 57.942 | 39.130 | 11.18 | 0.00 | 39.61 | 2.71 |
3607 | 3771 | 5.452255 | AGGATTGTCCATATGCTCAACATT | 58.548 | 37.500 | 11.18 | 4.02 | 39.61 | 2.71 |
3629 | 3793 | 4.773323 | GCCAATACTAAGGCCATCATTC | 57.227 | 45.455 | 5.01 | 0.00 | 45.18 | 2.67 |
3651 | 3815 | 5.730550 | TCTTGAAGTAGTTGTGTCACAAGT | 58.269 | 37.500 | 25.38 | 25.38 | 43.55 | 3.16 |
3652 | 3816 | 6.869695 | TCTTGAAGTAGTTGTGTCACAAGTA | 58.130 | 36.000 | 23.56 | 23.56 | 41.57 | 2.24 |
3679 | 3843 | 4.639135 | AACTTGACACTCTTTCTTTGGC | 57.361 | 40.909 | 0.00 | 0.00 | 0.00 | 4.52 |
3683 | 3847 | 0.663153 | ACACTCTTTCTTTGGCGTGC | 59.337 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
3698 | 3862 | 0.514255 | CGTGCCAGTGTCTCACAATG | 59.486 | 55.000 | 2.80 | 0.00 | 43.12 | 2.82 |
3706 | 3870 | 4.083643 | CCAGTGTCTCACAATGACATCAAC | 60.084 | 45.833 | 5.69 | 0.00 | 46.01 | 3.18 |
3715 | 3879 | 2.975193 | CAATGACATCAACGTGTTGCAG | 59.025 | 45.455 | 7.85 | 5.48 | 40.24 | 4.41 |
3719 | 3883 | 1.891919 | ATCAACGTGTTGCAGCGGT | 60.892 | 52.632 | 7.85 | 2.77 | 40.24 | 5.68 |
3723 | 3887 | 2.356313 | CGTGTTGCAGCGGTCTCT | 60.356 | 61.111 | 0.00 | 0.00 | 0.00 | 3.10 |
3736 | 3900 | 1.927174 | CGGTCTCTATTGTTTGCGAGG | 59.073 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
3747 | 3911 | 1.380403 | TTTGCGAGGTTGTGTGTGGG | 61.380 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
18 | 19 | 6.594159 | ACCAACCATAGAACAATCTTTCTACG | 59.406 | 38.462 | 0.00 | 0.00 | 40.18 | 3.51 |
26 | 27 | 4.398988 | TGATGCACCAACCATAGAACAATC | 59.601 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
30 | 31 | 4.782019 | TTTGATGCACCAACCATAGAAC | 57.218 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
134 | 136 | 3.611674 | TCGCCACGCCTGTCTTCA | 61.612 | 61.111 | 0.00 | 0.00 | 0.00 | 3.02 |
163 | 165 | 6.328672 | ACTGATAGCCTGATACTCAATTTCCT | 59.671 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
214 | 216 | 1.315690 | CCATGGATGTGGATCTGCAC | 58.684 | 55.000 | 5.56 | 0.00 | 42.02 | 4.57 |
322 | 325 | 2.676632 | TAGTGGCCGAATTCGCTAAA | 57.323 | 45.000 | 22.36 | 4.60 | 38.18 | 1.85 |
364 | 367 | 0.850856 | GTTATAGCGCGGTGTAGCAC | 59.149 | 55.000 | 23.02 | 10.97 | 36.85 | 4.40 |
367 | 370 | 3.120792 | ACAATGTTATAGCGCGGTGTAG | 58.879 | 45.455 | 23.02 | 8.81 | 0.00 | 2.74 |
384 | 387 | 7.796838 | CATGCTATAACGTTACATGCTACAAT | 58.203 | 34.615 | 18.69 | 8.26 | 32.54 | 2.71 |
391 | 394 | 6.226988 | TCATGCATGCTATAACGTTACATG | 57.773 | 37.500 | 22.25 | 23.16 | 40.80 | 3.21 |
392 | 395 | 6.650390 | TCATCATGCATGCTATAACGTTACAT | 59.350 | 34.615 | 22.25 | 7.10 | 31.70 | 2.29 |
407 | 410 | 8.665643 | TTTTCTGTTTCTTTTTCATCATGCAT | 57.334 | 26.923 | 0.00 | 0.00 | 0.00 | 3.96 |
414 | 417 | 9.612066 | TTGCCTTATTTTCTGTTTCTTTTTCAT | 57.388 | 25.926 | 0.00 | 0.00 | 0.00 | 2.57 |
459 | 462 | 2.445155 | GGGTGGATTTGGGCCTGT | 59.555 | 61.111 | 4.53 | 0.00 | 0.00 | 4.00 |
465 | 468 | 3.131478 | GCCGACGGGTGGATTTGG | 61.131 | 66.667 | 17.22 | 0.00 | 34.97 | 3.28 |
544 | 547 | 1.667467 | GCTCATCTCGGCGGAATAGAC | 60.667 | 57.143 | 7.21 | 0.00 | 0.00 | 2.59 |
634 | 637 | 1.053424 | ACGGCCAGGTCTTTTCACTA | 58.947 | 50.000 | 2.24 | 0.00 | 0.00 | 2.74 |
639 | 642 | 1.600916 | GCTCACGGCCAGGTCTTTT | 60.601 | 57.895 | 2.24 | 0.00 | 34.27 | 2.27 |
770 | 775 | 3.686916 | AAATATAGCGAGGCCCTTCTC | 57.313 | 47.619 | 0.00 | 0.00 | 0.00 | 2.87 |
979 | 1021 | 0.179089 | CTGAGCTTGCGATGGCTAGT | 60.179 | 55.000 | 12.19 | 0.49 | 42.87 | 2.57 |
1431 | 1503 | 1.617536 | AGCTCCTTCTGGGCATCCA | 60.618 | 57.895 | 0.00 | 0.00 | 41.58 | 3.41 |
1447 | 1519 | 4.373116 | TCGACCACGGCCTTGAGC | 62.373 | 66.667 | 11.54 | 0.95 | 40.21 | 4.26 |
1533 | 1605 | 1.064952 | GGGATTTTACGATGTTGCGGG | 59.935 | 52.381 | 0.00 | 0.00 | 35.12 | 6.13 |
1574 | 1646 | 4.680237 | CTGCTGGCCGTCGGACAA | 62.680 | 66.667 | 22.76 | 6.26 | 41.95 | 3.18 |
1633 | 1705 | 0.795085 | CGAGACCGAACGTGTAGACT | 59.205 | 55.000 | 0.00 | 0.00 | 38.22 | 3.24 |
1677 | 1762 | 5.694910 | CGGAACAAAAAGCTAGACAGAGTAA | 59.305 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1684 | 1769 | 5.390991 | CCTTCATCGGAACAAAAAGCTAGAC | 60.391 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1696 | 1781 | 4.361420 | GACTTAGCTACCTTCATCGGAAC | 58.639 | 47.826 | 0.00 | 0.00 | 0.00 | 3.62 |
1697 | 1782 | 3.066342 | CGACTTAGCTACCTTCATCGGAA | 59.934 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
1698 | 1783 | 2.617308 | CGACTTAGCTACCTTCATCGGA | 59.383 | 50.000 | 0.00 | 0.00 | 0.00 | 4.55 |
1699 | 1784 | 2.617308 | TCGACTTAGCTACCTTCATCGG | 59.383 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1700 | 1785 | 3.965292 | TCGACTTAGCTACCTTCATCG | 57.035 | 47.619 | 0.00 | 0.00 | 0.00 | 3.84 |
1701 | 1786 | 4.036352 | CGTTCGACTTAGCTACCTTCATC | 58.964 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
1702 | 1787 | 3.181489 | CCGTTCGACTTAGCTACCTTCAT | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
1703 | 1788 | 2.163010 | CCGTTCGACTTAGCTACCTTCA | 59.837 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1704 | 1789 | 2.795117 | CCGTTCGACTTAGCTACCTTC | 58.205 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
1706 | 1791 | 0.455005 | GCCGTTCGACTTAGCTACCT | 59.545 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
1707 | 1792 | 0.455005 | AGCCGTTCGACTTAGCTACC | 59.545 | 55.000 | 0.00 | 0.00 | 30.46 | 3.18 |
1708 | 1793 | 2.274920 | AAGCCGTTCGACTTAGCTAC | 57.725 | 50.000 | 0.00 | 0.00 | 32.39 | 3.58 |
1719 | 1804 | 2.158813 | TCATCATCCCCTTAAGCCGTTC | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1721 | 1806 | 1.507140 | TCATCATCCCCTTAAGCCGT | 58.493 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
1725 | 1810 | 4.362470 | TCAGCATCATCATCCCCTTAAG | 57.638 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
1732 | 1818 | 8.959705 | TTAAGATATCATCAGCATCATCATCC | 57.040 | 34.615 | 5.32 | 0.00 | 0.00 | 3.51 |
2115 | 2223 | 3.596066 | CTGGGCGCTGTAGCTGTGT | 62.596 | 63.158 | 7.64 | 0.00 | 39.32 | 3.72 |
2364 | 2472 | 1.219124 | GTCGATCAGCTTCTGGCCA | 59.781 | 57.895 | 4.71 | 4.71 | 43.05 | 5.36 |
2559 | 2667 | 1.153549 | CTTGGCCTGCTCGAGGTAC | 60.154 | 63.158 | 15.58 | 0.00 | 44.97 | 3.34 |
2836 | 2966 | 4.027755 | CGTCCGCGCTTATTGGAT | 57.972 | 55.556 | 5.56 | 0.00 | 33.63 | 3.41 |
2877 | 3025 | 6.998074 | TGAAACAGATGGATATTGGATGGTAC | 59.002 | 38.462 | 0.00 | 0.00 | 0.00 | 3.34 |
2906 | 3062 | 2.364970 | TGAAGCAAATGGGTTGACAAGG | 59.635 | 45.455 | 0.00 | 0.00 | 39.87 | 3.61 |
2980 | 3139 | 4.326826 | AGAAAAGAATGAAGACGCATCCA | 58.673 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
3008 | 3168 | 9.606631 | AAAATTAACAAGCTGGTTGAAATACAA | 57.393 | 25.926 | 24.71 | 1.06 | 38.60 | 2.41 |
3016 | 3176 | 4.920927 | CCGGTAAAATTAACAAGCTGGTTG | 59.079 | 41.667 | 17.16 | 17.29 | 42.48 | 3.77 |
3029 | 3189 | 6.313744 | GCATCTAGCATTACCGGTAAAATT | 57.686 | 37.500 | 29.74 | 19.10 | 44.79 | 1.82 |
3044 | 3204 | 2.279517 | CCCGTCCGTGCATCTAGC | 60.280 | 66.667 | 0.00 | 0.00 | 45.96 | 3.42 |
3045 | 3205 | 2.279517 | GCCCGTCCGTGCATCTAG | 60.280 | 66.667 | 0.00 | 0.00 | 0.00 | 2.43 |
3046 | 3206 | 2.914756 | TAGGCCCGTCCGTGCATCTA | 62.915 | 60.000 | 0.00 | 0.00 | 40.77 | 1.98 |
3048 | 3208 | 2.660258 | AATAGGCCCGTCCGTGCATC | 62.660 | 60.000 | 0.00 | 0.00 | 40.77 | 3.91 |
3049 | 3209 | 1.404479 | TAATAGGCCCGTCCGTGCAT | 61.404 | 55.000 | 0.00 | 0.00 | 40.77 | 3.96 |
3050 | 3210 | 2.059190 | TAATAGGCCCGTCCGTGCA | 61.059 | 57.895 | 0.00 | 0.00 | 40.77 | 4.57 |
3051 | 3211 | 1.593479 | GTAATAGGCCCGTCCGTGC | 60.593 | 63.158 | 0.00 | 0.00 | 40.77 | 5.34 |
3052 | 3212 | 0.249322 | CTGTAATAGGCCCGTCCGTG | 60.249 | 60.000 | 0.00 | 0.00 | 40.77 | 4.94 |
3053 | 3213 | 1.397390 | CCTGTAATAGGCCCGTCCGT | 61.397 | 60.000 | 0.00 | 0.00 | 40.38 | 4.69 |
3054 | 3214 | 1.111116 | TCCTGTAATAGGCCCGTCCG | 61.111 | 60.000 | 0.00 | 0.00 | 46.87 | 4.79 |
3055 | 3215 | 1.349067 | ATCCTGTAATAGGCCCGTCC | 58.651 | 55.000 | 0.00 | 0.00 | 46.87 | 4.79 |
3056 | 3216 | 3.487120 | AAATCCTGTAATAGGCCCGTC | 57.513 | 47.619 | 0.00 | 0.00 | 46.87 | 4.79 |
3057 | 3217 | 3.243975 | CGTAAATCCTGTAATAGGCCCGT | 60.244 | 47.826 | 0.00 | 0.00 | 46.87 | 5.28 |
3058 | 3218 | 3.323243 | CGTAAATCCTGTAATAGGCCCG | 58.677 | 50.000 | 0.00 | 0.00 | 46.87 | 6.13 |
3059 | 3219 | 3.325716 | TCCGTAAATCCTGTAATAGGCCC | 59.674 | 47.826 | 0.00 | 0.00 | 46.87 | 5.80 |
3060 | 3220 | 4.612264 | TCCGTAAATCCTGTAATAGGCC | 57.388 | 45.455 | 0.00 | 0.00 | 46.87 | 5.19 |
3061 | 3221 | 6.313164 | GCTATTCCGTAAATCCTGTAATAGGC | 59.687 | 42.308 | 0.00 | 0.00 | 46.87 | 3.93 |
3064 | 3224 | 9.865321 | GTATGCTATTCCGTAAATCCTGTAATA | 57.135 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
3065 | 3225 | 7.544566 | CGTATGCTATTCCGTAAATCCTGTAAT | 59.455 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
3066 | 3226 | 6.864685 | CGTATGCTATTCCGTAAATCCTGTAA | 59.135 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
3067 | 3227 | 6.016024 | ACGTATGCTATTCCGTAAATCCTGTA | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
3068 | 3228 | 5.221382 | ACGTATGCTATTCCGTAAATCCTGT | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3069 | 3229 | 5.118664 | CACGTATGCTATTCCGTAAATCCTG | 59.881 | 44.000 | 0.00 | 0.00 | 31.42 | 3.86 |
3070 | 3230 | 5.227908 | CACGTATGCTATTCCGTAAATCCT | 58.772 | 41.667 | 0.00 | 0.00 | 31.42 | 3.24 |
3071 | 3231 | 4.387862 | CCACGTATGCTATTCCGTAAATCC | 59.612 | 45.833 | 0.00 | 0.00 | 31.42 | 3.01 |
3072 | 3232 | 4.387862 | CCCACGTATGCTATTCCGTAAATC | 59.612 | 45.833 | 0.00 | 0.00 | 31.42 | 2.17 |
3073 | 3233 | 4.312443 | CCCACGTATGCTATTCCGTAAAT | 58.688 | 43.478 | 0.00 | 0.00 | 31.42 | 1.40 |
3074 | 3234 | 3.719924 | CCCACGTATGCTATTCCGTAAA | 58.280 | 45.455 | 0.00 | 0.00 | 31.42 | 2.01 |
3075 | 3235 | 2.546373 | GCCCACGTATGCTATTCCGTAA | 60.546 | 50.000 | 0.00 | 0.00 | 31.42 | 3.18 |
3076 | 3236 | 1.000060 | GCCCACGTATGCTATTCCGTA | 60.000 | 52.381 | 0.00 | 0.00 | 31.42 | 4.02 |
3077 | 3237 | 0.249741 | GCCCACGTATGCTATTCCGT | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
3078 | 3238 | 0.249699 | TGCCCACGTATGCTATTCCG | 60.250 | 55.000 | 9.54 | 0.00 | 0.00 | 4.30 |
3079 | 3239 | 1.961793 | TTGCCCACGTATGCTATTCC | 58.038 | 50.000 | 9.54 | 0.00 | 0.00 | 3.01 |
3080 | 3240 | 2.157668 | CGATTGCCCACGTATGCTATTC | 59.842 | 50.000 | 9.54 | 3.89 | 0.00 | 1.75 |
3081 | 3241 | 2.143122 | CGATTGCCCACGTATGCTATT | 58.857 | 47.619 | 9.54 | 0.00 | 0.00 | 1.73 |
3082 | 3242 | 1.608025 | CCGATTGCCCACGTATGCTAT | 60.608 | 52.381 | 9.54 | 7.42 | 0.00 | 2.97 |
3083 | 3243 | 0.249699 | CCGATTGCCCACGTATGCTA | 60.250 | 55.000 | 9.54 | 3.01 | 0.00 | 3.49 |
3084 | 3244 | 1.523711 | CCGATTGCCCACGTATGCT | 60.524 | 57.895 | 9.54 | 0.00 | 0.00 | 3.79 |
3085 | 3245 | 2.542907 | CCCGATTGCCCACGTATGC | 61.543 | 63.158 | 1.73 | 1.73 | 0.00 | 3.14 |
3086 | 3246 | 0.250295 | ATCCCGATTGCCCACGTATG | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 2.39 |
3087 | 3247 | 0.472471 | AATCCCGATTGCCCACGTAT | 59.528 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3088 | 3248 | 0.462937 | CAATCCCGATTGCCCACGTA | 60.463 | 55.000 | 4.57 | 0.00 | 41.27 | 3.57 |
3089 | 3249 | 1.748879 | CAATCCCGATTGCCCACGT | 60.749 | 57.895 | 4.57 | 0.00 | 41.27 | 4.49 |
3090 | 3250 | 2.480610 | CCAATCCCGATTGCCCACG | 61.481 | 63.158 | 11.24 | 0.00 | 45.06 | 4.94 |
3091 | 3251 | 2.127232 | CCCAATCCCGATTGCCCAC | 61.127 | 63.158 | 11.24 | 0.00 | 45.06 | 4.61 |
3092 | 3252 | 2.278404 | CCCAATCCCGATTGCCCA | 59.722 | 61.111 | 11.24 | 0.00 | 45.06 | 5.36 |
3093 | 3253 | 2.521708 | CCCCAATCCCGATTGCCC | 60.522 | 66.667 | 11.24 | 0.00 | 45.06 | 5.36 |
3094 | 3254 | 1.076339 | TTCCCCAATCCCGATTGCC | 60.076 | 57.895 | 11.24 | 0.00 | 45.06 | 4.52 |
3095 | 3255 | 0.106719 | TCTTCCCCAATCCCGATTGC | 60.107 | 55.000 | 11.24 | 0.00 | 45.06 | 3.56 |
3096 | 3256 | 1.477558 | CCTCTTCCCCAATCCCGATTG | 60.478 | 57.143 | 9.97 | 9.97 | 45.77 | 2.67 |
3097 | 3257 | 0.846693 | CCTCTTCCCCAATCCCGATT | 59.153 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
3098 | 3258 | 1.062488 | CCCTCTTCCCCAATCCCGAT | 61.062 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3099 | 3259 | 1.692749 | CCCTCTTCCCCAATCCCGA | 60.693 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
3100 | 3260 | 1.692749 | TCCCTCTTCCCCAATCCCG | 60.693 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
3101 | 3261 | 2.000825 | GCTCCCTCTTCCCCAATCCC | 62.001 | 65.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3102 | 3262 | 1.281925 | TGCTCCCTCTTCCCCAATCC | 61.282 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3103 | 3263 | 0.849417 | ATGCTCCCTCTTCCCCAATC | 59.151 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
3104 | 3264 | 0.554792 | CATGCTCCCTCTTCCCCAAT | 59.445 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3105 | 3265 | 1.574526 | CCATGCTCCCTCTTCCCCAA | 61.575 | 60.000 | 0.00 | 0.00 | 0.00 | 4.12 |
3106 | 3266 | 2.002977 | CCATGCTCCCTCTTCCCCA | 61.003 | 63.158 | 0.00 | 0.00 | 0.00 | 4.96 |
3107 | 3267 | 2.761465 | CCCATGCTCCCTCTTCCCC | 61.761 | 68.421 | 0.00 | 0.00 | 0.00 | 4.81 |
3108 | 3268 | 2.922234 | CCCATGCTCCCTCTTCCC | 59.078 | 66.667 | 0.00 | 0.00 | 0.00 | 3.97 |
3109 | 3269 | 2.194326 | GCCCATGCTCCCTCTTCC | 59.806 | 66.667 | 0.00 | 0.00 | 33.53 | 3.46 |
3110 | 3270 | 2.194326 | GGCCCATGCTCCCTCTTC | 59.806 | 66.667 | 0.00 | 0.00 | 37.74 | 2.87 |
3111 | 3271 | 3.424105 | GGGCCCATGCTCCCTCTT | 61.424 | 66.667 | 19.95 | 0.00 | 39.46 | 2.85 |
3127 | 3287 | 2.840467 | TTATTTTCGGCGGGGGTGGG | 62.840 | 60.000 | 7.21 | 0.00 | 0.00 | 4.61 |
3128 | 3288 | 1.378778 | TTATTTTCGGCGGGGGTGG | 60.379 | 57.895 | 7.21 | 0.00 | 0.00 | 4.61 |
3129 | 3289 | 1.381165 | CCTTATTTTCGGCGGGGGTG | 61.381 | 60.000 | 7.21 | 0.00 | 0.00 | 4.61 |
3130 | 3290 | 1.077285 | CCTTATTTTCGGCGGGGGT | 60.077 | 57.895 | 7.21 | 0.00 | 0.00 | 4.95 |
3131 | 3291 | 1.826487 | CCCTTATTTTCGGCGGGGG | 60.826 | 63.158 | 7.21 | 4.06 | 0.00 | 5.40 |
3132 | 3292 | 3.836151 | CCCTTATTTTCGGCGGGG | 58.164 | 61.111 | 7.21 | 3.50 | 0.00 | 5.73 |
3133 | 3293 | 1.826487 | CCCCCTTATTTTCGGCGGG | 60.826 | 63.158 | 7.21 | 0.00 | 34.62 | 6.13 |
3134 | 3294 | 3.836151 | CCCCCTTATTTTCGGCGG | 58.164 | 61.111 | 7.21 | 0.00 | 0.00 | 6.13 |
3148 | 3308 | 6.137559 | TCTTCTAAACTAATCTCTCTCCCCC | 58.862 | 44.000 | 0.00 | 0.00 | 0.00 | 5.40 |
3149 | 3309 | 7.663043 | TTCTTCTAAACTAATCTCTCTCCCC | 57.337 | 40.000 | 0.00 | 0.00 | 0.00 | 4.81 |
3155 | 3315 | 9.930693 | ACGTGATTTTCTTCTAAACTAATCTCT | 57.069 | 29.630 | 0.00 | 0.00 | 0.00 | 3.10 |
3162 | 3322 | 8.347771 | GGGTTTTACGTGATTTTCTTCTAAACT | 58.652 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
3163 | 3323 | 7.592533 | GGGGTTTTACGTGATTTTCTTCTAAAC | 59.407 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
3164 | 3324 | 7.255555 | GGGGGTTTTACGTGATTTTCTTCTAAA | 60.256 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
3165 | 3325 | 6.207221 | GGGGGTTTTACGTGATTTTCTTCTAA | 59.793 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
3166 | 3326 | 5.706833 | GGGGGTTTTACGTGATTTTCTTCTA | 59.293 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3167 | 3327 | 4.521639 | GGGGGTTTTACGTGATTTTCTTCT | 59.478 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
3168 | 3328 | 4.614306 | CGGGGGTTTTACGTGATTTTCTTC | 60.614 | 45.833 | 0.00 | 0.00 | 0.00 | 2.87 |
3169 | 3329 | 3.253921 | CGGGGGTTTTACGTGATTTTCTT | 59.746 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
3170 | 3330 | 2.815503 | CGGGGGTTTTACGTGATTTTCT | 59.184 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
3171 | 3331 | 2.553602 | ACGGGGGTTTTACGTGATTTTC | 59.446 | 45.455 | 0.00 | 0.00 | 39.64 | 2.29 |
3172 | 3332 | 2.585330 | ACGGGGGTTTTACGTGATTTT | 58.415 | 42.857 | 0.00 | 0.00 | 39.64 | 1.82 |
3173 | 3333 | 2.275134 | ACGGGGGTTTTACGTGATTT | 57.725 | 45.000 | 0.00 | 0.00 | 39.64 | 2.17 |
3178 | 3338 | 0.033920 | GACTCACGGGGGTTTTACGT | 59.966 | 55.000 | 0.00 | 0.00 | 42.17 | 3.57 |
3179 | 3339 | 0.319405 | AGACTCACGGGGGTTTTACG | 59.681 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3180 | 3340 | 2.093816 | CCTAGACTCACGGGGGTTTTAC | 60.094 | 54.545 | 0.00 | 0.00 | 0.00 | 2.01 |
3181 | 3341 | 2.181975 | CCTAGACTCACGGGGGTTTTA | 58.818 | 52.381 | 0.00 | 0.00 | 0.00 | 1.52 |
3182 | 3342 | 0.981943 | CCTAGACTCACGGGGGTTTT | 59.018 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3183 | 3343 | 0.115745 | TCCTAGACTCACGGGGGTTT | 59.884 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3184 | 3344 | 0.338814 | ATCCTAGACTCACGGGGGTT | 59.661 | 55.000 | 0.00 | 0.00 | 0.00 | 4.11 |
3185 | 3345 | 0.338814 | AATCCTAGACTCACGGGGGT | 59.661 | 55.000 | 0.00 | 0.00 | 0.00 | 4.95 |
3186 | 3346 | 2.376695 | TAATCCTAGACTCACGGGGG | 57.623 | 55.000 | 0.00 | 0.00 | 0.00 | 5.40 |
3187 | 3347 | 3.641906 | ACAATAATCCTAGACTCACGGGG | 59.358 | 47.826 | 0.00 | 0.00 | 0.00 | 5.73 |
3188 | 3348 | 4.939052 | ACAATAATCCTAGACTCACGGG | 57.061 | 45.455 | 0.00 | 0.00 | 0.00 | 5.28 |
3189 | 3349 | 8.888579 | AAATAACAATAATCCTAGACTCACGG | 57.111 | 34.615 | 0.00 | 0.00 | 0.00 | 4.94 |
3207 | 3367 | 9.891828 | CAAATCTGTGCTTAGTGTAAAATAACA | 57.108 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
3208 | 3368 | 9.893305 | ACAAATCTGTGCTTAGTGTAAAATAAC | 57.107 | 29.630 | 0.00 | 0.00 | 33.30 | 1.89 |
3210 | 3370 | 9.278978 | TGACAAATCTGTGCTTAGTGTAAAATA | 57.721 | 29.630 | 0.00 | 0.00 | 35.30 | 1.40 |
3211 | 3371 | 8.165239 | TGACAAATCTGTGCTTAGTGTAAAAT | 57.835 | 30.769 | 0.00 | 0.00 | 35.30 | 1.82 |
3212 | 3372 | 7.561021 | TGACAAATCTGTGCTTAGTGTAAAA | 57.439 | 32.000 | 0.00 | 0.00 | 35.30 | 1.52 |
3213 | 3373 | 7.584108 | CATGACAAATCTGTGCTTAGTGTAAA | 58.416 | 34.615 | 0.00 | 0.00 | 35.30 | 2.01 |
3214 | 3374 | 6.348458 | GCATGACAAATCTGTGCTTAGTGTAA | 60.348 | 38.462 | 0.00 | 0.00 | 35.30 | 2.41 |
3215 | 3375 | 5.122239 | GCATGACAAATCTGTGCTTAGTGTA | 59.878 | 40.000 | 0.00 | 0.00 | 35.30 | 2.90 |
3216 | 3376 | 4.083110 | GCATGACAAATCTGTGCTTAGTGT | 60.083 | 41.667 | 0.00 | 0.00 | 35.30 | 3.55 |
3217 | 3377 | 4.155462 | AGCATGACAAATCTGTGCTTAGTG | 59.845 | 41.667 | 0.00 | 0.00 | 41.61 | 2.74 |
3218 | 3378 | 4.330250 | AGCATGACAAATCTGTGCTTAGT | 58.670 | 39.130 | 0.00 | 0.00 | 41.61 | 2.24 |
3219 | 3379 | 4.959596 | AGCATGACAAATCTGTGCTTAG | 57.040 | 40.909 | 0.00 | 0.00 | 41.61 | 2.18 |
3256 | 3416 | 4.494484 | CAATTCTAGTGACACGTGGATGA | 58.506 | 43.478 | 21.57 | 6.21 | 0.00 | 2.92 |
3265 | 3425 | 1.702401 | TGGGTGGCAATTCTAGTGACA | 59.298 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
3266 | 3426 | 2.489938 | TGGGTGGCAATTCTAGTGAC | 57.510 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3273 | 3433 | 4.133078 | TCAAACATTTTGGGTGGCAATTC | 58.867 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
3276 | 3436 | 3.853355 | ATCAAACATTTTGGGTGGCAA | 57.147 | 38.095 | 0.00 | 0.00 | 0.00 | 4.52 |
3283 | 3443 | 3.371591 | CCATGGCGAATCAAACATTTTGG | 59.628 | 43.478 | 0.00 | 0.00 | 0.00 | 3.28 |
3289 | 3449 | 1.902938 | TGACCATGGCGAATCAAACA | 58.097 | 45.000 | 13.04 | 0.00 | 0.00 | 2.83 |
3290 | 3450 | 3.296322 | TTTGACCATGGCGAATCAAAC | 57.704 | 42.857 | 19.19 | 0.65 | 36.42 | 2.93 |
3298 | 3462 | 0.808125 | TTTCGGATTTGACCATGGCG | 59.192 | 50.000 | 13.04 | 5.41 | 0.00 | 5.69 |
3314 | 3478 | 2.286025 | CCCGATAAATCCCGAACGTTTC | 59.714 | 50.000 | 0.46 | 0.00 | 0.00 | 2.78 |
3315 | 3479 | 2.282407 | CCCGATAAATCCCGAACGTTT | 58.718 | 47.619 | 0.46 | 0.00 | 0.00 | 3.60 |
3318 | 3482 | 0.105408 | ACCCCGATAAATCCCGAACG | 59.895 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
3332 | 3496 | 1.539827 | GTGATTTCAACAAGGACCCCG | 59.460 | 52.381 | 0.00 | 0.00 | 0.00 | 5.73 |
3361 | 3525 | 7.537306 | CGAAATGAACACCGAAATAACTGAATT | 59.463 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
3394 | 3558 | 2.194201 | TTTCGGTCCTTTGGTCATCC | 57.806 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3396 | 3560 | 3.509967 | GGAAATTTCGGTCCTTTGGTCAT | 59.490 | 43.478 | 11.95 | 0.00 | 0.00 | 3.06 |
3397 | 3561 | 2.888414 | GGAAATTTCGGTCCTTTGGTCA | 59.112 | 45.455 | 11.95 | 0.00 | 0.00 | 4.02 |
3398 | 3562 | 2.888414 | TGGAAATTTCGGTCCTTTGGTC | 59.112 | 45.455 | 11.95 | 0.00 | 34.77 | 4.02 |
3400 | 3564 | 2.890945 | AGTGGAAATTTCGGTCCTTTGG | 59.109 | 45.455 | 11.95 | 0.00 | 34.77 | 3.28 |
3401 | 3565 | 4.037446 | TCAAGTGGAAATTTCGGTCCTTTG | 59.963 | 41.667 | 11.95 | 9.98 | 34.77 | 2.77 |
3402 | 3566 | 4.037565 | GTCAAGTGGAAATTTCGGTCCTTT | 59.962 | 41.667 | 11.95 | 0.00 | 34.77 | 3.11 |
3403 | 3567 | 3.568430 | GTCAAGTGGAAATTTCGGTCCTT | 59.432 | 43.478 | 11.95 | 7.95 | 34.77 | 3.36 |
3404 | 3568 | 3.146847 | GTCAAGTGGAAATTTCGGTCCT | 58.853 | 45.455 | 11.95 | 2.50 | 34.77 | 3.85 |
3405 | 3569 | 3.146847 | AGTCAAGTGGAAATTTCGGTCC | 58.853 | 45.455 | 11.95 | 0.00 | 0.00 | 4.46 |
3406 | 3570 | 4.830826 | AAGTCAAGTGGAAATTTCGGTC | 57.169 | 40.909 | 11.95 | 5.19 | 0.00 | 4.79 |
3407 | 3571 | 4.642885 | TCAAAGTCAAGTGGAAATTTCGGT | 59.357 | 37.500 | 11.95 | 0.00 | 0.00 | 4.69 |
3408 | 3572 | 4.976116 | GTCAAAGTCAAGTGGAAATTTCGG | 59.024 | 41.667 | 11.95 | 0.05 | 0.00 | 4.30 |
3409 | 3573 | 5.682862 | CAGTCAAAGTCAAGTGGAAATTTCG | 59.317 | 40.000 | 11.95 | 0.00 | 0.00 | 3.46 |
3410 | 3574 | 6.795399 | TCAGTCAAAGTCAAGTGGAAATTTC | 58.205 | 36.000 | 9.83 | 9.83 | 0.00 | 2.17 |
3413 | 3577 | 5.684704 | TCTCAGTCAAAGTCAAGTGGAAAT | 58.315 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
3418 | 3582 | 6.346120 | CGTTGTATCTCAGTCAAAGTCAAGTG | 60.346 | 42.308 | 0.00 | 0.00 | 0.00 | 3.16 |
3425 | 3589 | 9.307121 | AGATAAATCGTTGTATCTCAGTCAAAG | 57.693 | 33.333 | 0.98 | 0.00 | 32.72 | 2.77 |
3553 | 3717 | 0.394762 | TGCATGCAGTCCAGGAATCC | 60.395 | 55.000 | 18.46 | 0.00 | 0.00 | 3.01 |
3629 | 3793 | 6.757010 | AGTACTTGTGACACAACTACTTCAAG | 59.243 | 38.462 | 23.86 | 13.06 | 35.59 | 3.02 |
3651 | 3815 | 9.314321 | CAAAGAAAGAGTGTCAAGTTTAGAGTA | 57.686 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
3652 | 3816 | 7.281100 | CCAAAGAAAGAGTGTCAAGTTTAGAGT | 59.719 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
3657 | 3821 | 4.438744 | CGCCAAAGAAAGAGTGTCAAGTTT | 60.439 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
3660 | 3824 | 2.614057 | ACGCCAAAGAAAGAGTGTCAAG | 59.386 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
3679 | 3843 | 0.514255 | CATTGTGAGACACTGGCACG | 59.486 | 55.000 | 0.00 | 0.00 | 35.11 | 5.34 |
3698 | 3862 | 0.722469 | CGCTGCAACACGTTGATGTC | 60.722 | 55.000 | 13.97 | 0.00 | 42.93 | 3.06 |
3706 | 3870 | 0.458543 | ATAGAGACCGCTGCAACACG | 60.459 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
3715 | 3879 | 1.324736 | CTCGCAAACAATAGAGACCGC | 59.675 | 52.381 | 0.00 | 0.00 | 32.84 | 5.68 |
3719 | 3883 | 3.745975 | CACAACCTCGCAAACAATAGAGA | 59.254 | 43.478 | 0.00 | 0.00 | 32.84 | 3.10 |
3723 | 3887 | 2.946329 | ACACACAACCTCGCAAACAATA | 59.054 | 40.909 | 0.00 | 0.00 | 0.00 | 1.90 |
3736 | 3900 | 2.732289 | ATCTTGGCCCACACACAAC | 58.268 | 52.632 | 0.00 | 0.00 | 0.00 | 3.32 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.