Multiple sequence alignment - TraesCS7D01G434200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G434200 chr7D 100.000 2573 0 0 1 2573 554184901 554182329 0.000000e+00 4752.0
1 TraesCS7D01G434200 chr7D 93.501 954 59 3 824 1775 554236495 554235543 0.000000e+00 1415.0
2 TraesCS7D01G434200 chr7D 88.212 1018 82 18 627 1617 554226285 554225279 0.000000e+00 1181.0
3 TraesCS7D01G434200 chr7D 87.858 1013 81 16 629 1617 553860762 553859768 0.000000e+00 1151.0
4 TraesCS7D01G434200 chr7D 86.306 942 84 22 688 1617 554199136 554198228 0.000000e+00 983.0
5 TraesCS7D01G434200 chr7D 95.349 344 15 1 1 344 312121326 312121668 1.740000e-151 545.0
6 TraesCS7D01G434200 chr7D 98.551 138 2 0 1771 1908 554230088 554229951 7.110000e-61 244.0
7 TraesCS7D01G434200 chr7D 81.098 164 22 6 343 499 13469006 13468845 3.480000e-24 122.0
8 TraesCS7D01G434200 chr7A 88.805 1188 79 29 743 1906 639837181 639838338 0.000000e+00 1408.0
9 TraesCS7D01G434200 chr7A 85.771 1012 93 21 628 1611 639917423 639918411 0.000000e+00 1024.0
10 TraesCS7D01G434200 chr7A 85.897 936 84 20 702 1611 639881123 639882036 0.000000e+00 953.0
11 TraesCS7D01G434200 chr7A 79.245 159 24 6 341 492 720350710 720350866 4.530000e-18 102.0
12 TraesCS7D01G434200 chr7B 87.264 1005 98 12 628 1614 600752192 600753184 0.000000e+00 1120.0
13 TraesCS7D01G434200 chr7B 86.753 1004 96 18 628 1614 600801684 600802667 0.000000e+00 1083.0
14 TraesCS7D01G434200 chr7B 89.673 794 71 7 826 1614 600719857 600720644 0.000000e+00 1002.0
15 TraesCS7D01G434200 chr5D 96.861 669 21 0 1905 2573 50740131 50740799 0.000000e+00 1120.0
16 TraesCS7D01G434200 chr5D 96.997 666 20 0 1908 2573 481700418 481701083 0.000000e+00 1120.0
17 TraesCS7D01G434200 chr5D 96.407 668 24 0 1906 2573 40067939 40068606 0.000000e+00 1101.0
18 TraesCS7D01G434200 chr5D 96.541 665 23 0 1909 2573 357367873 357367209 0.000000e+00 1101.0
19 TraesCS7D01G434200 chr5D 79.375 160 24 7 341 494 65950920 65950764 1.260000e-18 104.0
20 TraesCS7D01G434200 chr2D 96.842 665 21 0 1909 2573 10448909 10449573 0.000000e+00 1112.0
21 TraesCS7D01G434200 chr2D 96.402 667 22 2 1907 2573 517021807 517022471 0.000000e+00 1098.0
22 TraesCS7D01G434200 chr2D 96.802 344 10 1 1 344 500683649 500683307 7.990000e-160 573.0
23 TraesCS7D01G434200 chr2D 96.221 344 12 1 1 344 114411756 114412098 1.730000e-156 562.0
24 TraesCS7D01G434200 chr2D 95.640 344 14 1 1 344 539456828 539457170 3.740000e-153 551.0
25 TraesCS7D01G434200 chr2D 95.349 344 15 1 1 344 596765129 596764787 1.740000e-151 545.0
26 TraesCS7D01G434200 chr2D 78.070 114 17 4 389 495 531479048 531478936 5.940000e-07 65.8
27 TraesCS7D01G434200 chr6D 96.541 665 23 0 1909 2573 28726624 28725960 0.000000e+00 1101.0
28 TraesCS7D01G434200 chr6D 96.000 675 22 2 1904 2573 310771729 310772403 0.000000e+00 1092.0
29 TraesCS7D01G434200 chr6D 95.072 345 15 2 1 344 359249308 359249651 2.250000e-150 542.0
30 TraesCS7D01G434200 chr6D 94.783 345 16 2 1 344 359239688 359240031 1.050000e-148 536.0
31 TraesCS7D01G434200 chr3D 96.142 674 21 2 1904 2573 554784205 554784877 0.000000e+00 1096.0
32 TraesCS7D01G434200 chr3D 80.380 158 21 6 343 492 360906813 360906968 7.530000e-21 111.0
33 TraesCS7D01G434200 chr3D 80.255 157 24 3 343 492 498946532 498946376 7.530000e-21 111.0
34 TraesCS7D01G434200 chr4D 95.072 345 16 1 1 344 321036873 321037217 2.250000e-150 542.0
35 TraesCS7D01G434200 chr4D 94.783 345 17 1 1 344 321045175 321045519 1.050000e-148 536.0
36 TraesCS7D01G434200 chr5B 78.750 160 23 6 343 494 609861633 609861477 2.110000e-16 97.1
37 TraesCS7D01G434200 chr4A 78.344 157 25 7 343 492 535408885 535408731 2.730000e-15 93.5
38 TraesCS7D01G434200 chr1B 88.312 77 8 1 343 419 670572829 670572754 9.800000e-15 91.6
39 TraesCS7D01G434200 chr2A 87.013 77 9 1 343 419 686009948 686009873 4.560000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G434200 chr7D 554182329 554184901 2572 True 4752.0 4752 100.0000 1 2573 1 chr7D.!!$R3 2572
1 TraesCS7D01G434200 chr7D 554235543 554236495 952 True 1415.0 1415 93.5010 824 1775 1 chr7D.!!$R5 951
2 TraesCS7D01G434200 chr7D 553859768 553860762 994 True 1151.0 1151 87.8580 629 1617 1 chr7D.!!$R2 988
3 TraesCS7D01G434200 chr7D 554198228 554199136 908 True 983.0 983 86.3060 688 1617 1 chr7D.!!$R4 929
4 TraesCS7D01G434200 chr7D 554225279 554230088 4809 True 712.5 1181 93.3815 627 1908 2 chr7D.!!$R6 1281
5 TraesCS7D01G434200 chr7A 639837181 639838338 1157 False 1408.0 1408 88.8050 743 1906 1 chr7A.!!$F1 1163
6 TraesCS7D01G434200 chr7A 639917423 639918411 988 False 1024.0 1024 85.7710 628 1611 1 chr7A.!!$F3 983
7 TraesCS7D01G434200 chr7A 639881123 639882036 913 False 953.0 953 85.8970 702 1611 1 chr7A.!!$F2 909
8 TraesCS7D01G434200 chr7B 600752192 600753184 992 False 1120.0 1120 87.2640 628 1614 1 chr7B.!!$F2 986
9 TraesCS7D01G434200 chr7B 600801684 600802667 983 False 1083.0 1083 86.7530 628 1614 1 chr7B.!!$F3 986
10 TraesCS7D01G434200 chr7B 600719857 600720644 787 False 1002.0 1002 89.6730 826 1614 1 chr7B.!!$F1 788
11 TraesCS7D01G434200 chr5D 50740131 50740799 668 False 1120.0 1120 96.8610 1905 2573 1 chr5D.!!$F2 668
12 TraesCS7D01G434200 chr5D 481700418 481701083 665 False 1120.0 1120 96.9970 1908 2573 1 chr5D.!!$F3 665
13 TraesCS7D01G434200 chr5D 40067939 40068606 667 False 1101.0 1101 96.4070 1906 2573 1 chr5D.!!$F1 667
14 TraesCS7D01G434200 chr5D 357367209 357367873 664 True 1101.0 1101 96.5410 1909 2573 1 chr5D.!!$R2 664
15 TraesCS7D01G434200 chr2D 10448909 10449573 664 False 1112.0 1112 96.8420 1909 2573 1 chr2D.!!$F1 664
16 TraesCS7D01G434200 chr2D 517021807 517022471 664 False 1098.0 1098 96.4020 1907 2573 1 chr2D.!!$F3 666
17 TraesCS7D01G434200 chr6D 28725960 28726624 664 True 1101.0 1101 96.5410 1909 2573 1 chr6D.!!$R1 664
18 TraesCS7D01G434200 chr6D 310771729 310772403 674 False 1092.0 1092 96.0000 1904 2573 1 chr6D.!!$F1 669
19 TraesCS7D01G434200 chr3D 554784205 554784877 672 False 1096.0 1096 96.1420 1904 2573 1 chr3D.!!$F2 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 374 0.031817 AAATCTGGGCCAGGAATGGG 60.032 55.0 32.23 7.05 31.51 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2129 5387 0.108041 ACCGGTTCGTGACACAAACT 60.108 50.0 0.0 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.337973 GATAAATAGTATTGAAAAACGTCGTCG 57.662 33.333 0.00 0.00 43.34 5.12
53 54 3.429061 AGTATTGAAAAACGTCGTCGC 57.571 42.857 0.00 0.00 41.18 5.19
54 55 3.054878 AGTATTGAAAAACGTCGTCGCT 58.945 40.909 0.00 0.00 41.18 4.93
55 56 3.492011 AGTATTGAAAAACGTCGTCGCTT 59.508 39.130 0.00 0.00 41.18 4.68
56 57 2.810028 TTGAAAAACGTCGTCGCTTT 57.190 40.000 0.00 0.00 41.18 3.51
59 60 2.285371 TGAAAAACGTCGTCGCTTTGAG 60.285 45.455 0.00 0.00 41.18 3.02
60 61 1.563111 AAAACGTCGTCGCTTTGAGA 58.437 45.000 0.00 0.00 41.18 3.27
61 62 1.563111 AAACGTCGTCGCTTTGAGAA 58.437 45.000 0.00 0.00 41.18 2.87
62 63 1.129326 AACGTCGTCGCTTTGAGAAG 58.871 50.000 0.00 0.00 41.18 2.85
65 66 2.095364 ACGTCGTCGCTTTGAGAAGTAT 60.095 45.455 0.99 0.00 41.18 2.12
66 67 2.276540 CGTCGTCGCTTTGAGAAGTATG 59.723 50.000 0.00 0.00 35.25 2.39
70 71 3.859961 CGTCGCTTTGAGAAGTATGTGAT 59.140 43.478 0.00 0.00 35.25 3.06
71 72 5.034797 CGTCGCTTTGAGAAGTATGTGATA 58.965 41.667 0.00 0.00 35.25 2.15
73 74 6.291322 CGTCGCTTTGAGAAGTATGTGATAAG 60.291 42.308 0.00 0.00 35.25 1.73
74 75 5.520288 TCGCTTTGAGAAGTATGTGATAAGC 59.480 40.000 0.00 0.00 35.25 3.09
75 76 5.291858 CGCTTTGAGAAGTATGTGATAAGCA 59.708 40.000 0.00 0.00 36.24 3.91
76 77 6.183360 CGCTTTGAGAAGTATGTGATAAGCAA 60.183 38.462 0.00 0.00 36.24 3.91
77 78 7.185453 GCTTTGAGAAGTATGTGATAAGCAAG 58.815 38.462 0.00 0.00 36.42 4.01
78 79 7.065085 GCTTTGAGAAGTATGTGATAAGCAAGA 59.935 37.037 0.00 0.00 36.42 3.02
80 81 6.045318 TGAGAAGTATGTGATAAGCAAGAGC 58.955 40.000 0.00 0.00 42.56 4.09
92 93 1.974265 GCAAGAGCTCCCCCTAAATC 58.026 55.000 10.93 0.00 37.91 2.17
93 94 1.492599 GCAAGAGCTCCCCCTAAATCT 59.507 52.381 10.93 0.00 37.91 2.40
94 95 2.706190 GCAAGAGCTCCCCCTAAATCTA 59.294 50.000 10.93 0.00 37.91 1.98
95 96 3.329225 GCAAGAGCTCCCCCTAAATCTAT 59.671 47.826 10.93 0.00 37.91 1.98
97 98 2.909662 AGAGCTCCCCCTAAATCTATGC 59.090 50.000 10.93 0.00 0.00 3.14
98 99 2.639839 GAGCTCCCCCTAAATCTATGCA 59.360 50.000 0.87 0.00 0.00 3.96
99 100 3.263724 AGCTCCCCCTAAATCTATGCAT 58.736 45.455 3.79 3.79 0.00 3.96
101 102 4.852118 AGCTCCCCCTAAATCTATGCATTA 59.148 41.667 3.54 0.00 0.00 1.90
102 103 5.493977 AGCTCCCCCTAAATCTATGCATTAT 59.506 40.000 3.54 0.00 0.00 1.28
104 105 6.665248 GCTCCCCCTAAATCTATGCATTATTT 59.335 38.462 18.30 18.30 0.00 1.40
106 107 9.753674 CTCCCCCTAAATCTATGCATTATTTAA 57.246 33.333 19.39 9.73 0.00 1.52
143 144 4.291540 GCAAATGCACAATCGATTAGGA 57.708 40.909 10.97 8.32 41.59 2.94
144 145 4.863491 GCAAATGCACAATCGATTAGGAT 58.137 39.130 10.97 10.30 41.59 3.24
145 146 4.913924 GCAAATGCACAATCGATTAGGATC 59.086 41.667 10.97 0.00 41.59 3.36
147 148 6.675026 CAAATGCACAATCGATTAGGATCAT 58.325 36.000 10.97 7.39 32.33 2.45
149 150 3.989817 TGCACAATCGATTAGGATCATCG 59.010 43.478 10.97 7.43 44.09 3.84
150 151 3.369147 GCACAATCGATTAGGATCATCGG 59.631 47.826 10.97 0.00 43.14 4.18
151 152 4.560128 CACAATCGATTAGGATCATCGGT 58.440 43.478 10.97 4.33 43.14 4.69
152 153 4.991056 CACAATCGATTAGGATCATCGGTT 59.009 41.667 10.97 9.58 46.10 4.44
153 154 6.156519 CACAATCGATTAGGATCATCGGTTA 58.843 40.000 10.97 0.00 43.93 2.85
154 155 6.089551 CACAATCGATTAGGATCATCGGTTAC 59.910 42.308 10.97 0.00 43.93 2.50
155 156 6.015350 ACAATCGATTAGGATCATCGGTTACT 60.015 38.462 10.97 0.00 43.93 2.24
156 157 5.624344 TCGATTAGGATCATCGGTTACTC 57.376 43.478 12.41 0.00 43.14 2.59
158 159 5.768662 TCGATTAGGATCATCGGTTACTCTT 59.231 40.000 12.41 0.00 43.14 2.85
159 160 6.072618 TCGATTAGGATCATCGGTTACTCTTC 60.073 42.308 12.41 0.00 43.14 2.87
160 161 5.786264 TTAGGATCATCGGTTACTCTTCC 57.214 43.478 0.00 0.00 0.00 3.46
162 163 4.227197 AGGATCATCGGTTACTCTTCCAT 58.773 43.478 0.00 0.00 0.00 3.41
163 164 4.039730 AGGATCATCGGTTACTCTTCCATG 59.960 45.833 0.00 0.00 0.00 3.66
164 165 4.202264 GGATCATCGGTTACTCTTCCATGT 60.202 45.833 0.00 0.00 0.00 3.21
165 166 4.386867 TCATCGGTTACTCTTCCATGTC 57.613 45.455 0.00 0.00 0.00 3.06
166 167 3.767131 TCATCGGTTACTCTTCCATGTCA 59.233 43.478 0.00 0.00 0.00 3.58
167 168 3.587797 TCGGTTACTCTTCCATGTCAC 57.412 47.619 0.00 0.00 0.00 3.67
168 169 2.894765 TCGGTTACTCTTCCATGTCACA 59.105 45.455 0.00 0.00 0.00 3.58
170 171 4.707934 TCGGTTACTCTTCCATGTCACATA 59.292 41.667 0.00 0.00 0.00 2.29
171 172 4.804139 CGGTTACTCTTCCATGTCACATAC 59.196 45.833 0.00 0.00 0.00 2.39
172 173 5.623596 CGGTTACTCTTCCATGTCACATACA 60.624 44.000 0.00 0.00 43.86 2.29
175 176 5.946942 ACTCTTCCATGTCACATACATCT 57.053 39.130 0.00 0.00 46.15 2.90
176 177 6.305272 ACTCTTCCATGTCACATACATCTT 57.695 37.500 0.00 0.00 46.15 2.40
177 178 6.111382 ACTCTTCCATGTCACATACATCTTG 58.889 40.000 0.00 0.00 46.15 3.02
178 179 5.430886 TCTTCCATGTCACATACATCTTGG 58.569 41.667 0.00 0.00 46.15 3.61
179 180 4.842531 TCCATGTCACATACATCTTGGT 57.157 40.909 0.00 0.00 46.15 3.67
180 181 4.516323 TCCATGTCACATACATCTTGGTG 58.484 43.478 0.00 0.00 46.15 4.17
182 183 4.516323 CATGTCACATACATCTTGGTGGA 58.484 43.478 0.00 0.00 46.15 4.02
183 184 4.206477 TGTCACATACATCTTGGTGGAG 57.794 45.455 0.00 0.00 31.43 3.86
184 185 2.939103 GTCACATACATCTTGGTGGAGC 59.061 50.000 0.00 0.00 32.29 4.70
185 186 1.935873 CACATACATCTTGGTGGAGCG 59.064 52.381 0.00 0.00 0.00 5.03
187 188 0.833287 ATACATCTTGGTGGAGCGCT 59.167 50.000 11.27 11.27 0.00 5.92
188 189 0.175760 TACATCTTGGTGGAGCGCTC 59.824 55.000 29.38 29.38 0.00 5.03
190 191 0.674581 CATCTTGGTGGAGCGCTCAA 60.675 55.000 36.27 25.98 0.00 3.02
194 195 0.597568 TTGGTGGAGCGCTCAAAATG 59.402 50.000 36.27 0.00 0.00 2.32
195 196 0.250684 TGGTGGAGCGCTCAAAATGA 60.251 50.000 36.27 13.65 0.00 2.57
197 198 2.288666 GGTGGAGCGCTCAAAATGATA 58.711 47.619 36.27 10.63 0.00 2.15
198 199 2.289002 GGTGGAGCGCTCAAAATGATAG 59.711 50.000 36.27 0.00 0.00 2.08
199 200 3.198068 GTGGAGCGCTCAAAATGATAGA 58.802 45.455 36.27 5.88 0.00 1.98
200 201 3.623060 GTGGAGCGCTCAAAATGATAGAA 59.377 43.478 36.27 5.98 0.00 2.10
201 202 3.623060 TGGAGCGCTCAAAATGATAGAAC 59.377 43.478 36.27 15.97 0.00 3.01
202 203 3.873952 GGAGCGCTCAAAATGATAGAACT 59.126 43.478 36.27 0.00 0.00 3.01
203 204 4.333926 GGAGCGCTCAAAATGATAGAACTT 59.666 41.667 36.27 0.00 0.00 2.66
204 205 5.523916 GGAGCGCTCAAAATGATAGAACTTA 59.476 40.000 36.27 0.00 0.00 2.24
207 208 7.467623 AGCGCTCAAAATGATAGAACTTAAAG 58.532 34.615 2.64 0.00 0.00 1.85
209 210 7.243487 CGCTCAAAATGATAGAACTTAAAGCA 58.757 34.615 0.00 0.00 0.00 3.91
210 211 7.912250 CGCTCAAAATGATAGAACTTAAAGCAT 59.088 33.333 0.00 0.00 0.00 3.79
211 212 9.017669 GCTCAAAATGATAGAACTTAAAGCATG 57.982 33.333 0.00 0.00 0.00 4.06
212 213 8.915871 TCAAAATGATAGAACTTAAAGCATGC 57.084 30.769 10.51 10.51 0.00 4.06
213 214 8.522003 TCAAAATGATAGAACTTAAAGCATGCA 58.478 29.630 21.98 0.00 0.00 3.96
214 215 8.589629 CAAAATGATAGAACTTAAAGCATGCAC 58.410 33.333 21.98 0.67 0.00 4.57
215 216 7.636150 AATGATAGAACTTAAAGCATGCACT 57.364 32.000 21.98 8.71 0.00 4.40
216 217 6.668541 TGATAGAACTTAAAGCATGCACTC 57.331 37.500 21.98 5.12 0.00 3.51
219 220 5.557891 AGAACTTAAAGCATGCACTCATC 57.442 39.130 21.98 8.93 0.00 2.92
221 222 4.691860 ACTTAAAGCATGCACTCATCAC 57.308 40.909 21.98 0.00 0.00 3.06
222 223 3.441572 ACTTAAAGCATGCACTCATCACC 59.558 43.478 21.98 0.00 0.00 4.02
223 224 1.913778 AAAGCATGCACTCATCACCA 58.086 45.000 21.98 0.00 0.00 4.17
224 225 1.913778 AAGCATGCACTCATCACCAA 58.086 45.000 21.98 0.00 0.00 3.67
225 226 1.913778 AGCATGCACTCATCACCAAA 58.086 45.000 21.98 0.00 0.00 3.28
226 227 2.241160 AGCATGCACTCATCACCAAAA 58.759 42.857 21.98 0.00 0.00 2.44
228 229 2.288334 GCATGCACTCATCACCAAAACA 60.288 45.455 14.21 0.00 0.00 2.83
229 230 3.799574 GCATGCACTCATCACCAAAACAA 60.800 43.478 14.21 0.00 0.00 2.83
230 231 3.713858 TGCACTCATCACCAAAACAAG 57.286 42.857 0.00 0.00 0.00 3.16
232 233 3.181488 TGCACTCATCACCAAAACAAGTG 60.181 43.478 0.00 0.00 36.58 3.16
234 235 4.439974 GCACTCATCACCAAAACAAGTGAA 60.440 41.667 3.93 0.00 45.54 3.18
235 236 5.737063 GCACTCATCACCAAAACAAGTGAAT 60.737 40.000 3.93 0.00 45.54 2.57
236 237 5.688621 CACTCATCACCAAAACAAGTGAATG 59.311 40.000 0.00 0.00 45.54 2.67
237 238 5.593909 ACTCATCACCAAAACAAGTGAATGA 59.406 36.000 0.00 2.20 45.54 2.57
238 239 6.266103 ACTCATCACCAAAACAAGTGAATGAT 59.734 34.615 0.00 0.00 45.54 2.45
239 240 6.680810 TCATCACCAAAACAAGTGAATGATC 58.319 36.000 0.00 0.00 45.54 2.92
240 241 6.264970 TCATCACCAAAACAAGTGAATGATCA 59.735 34.615 0.00 0.00 45.54 2.92
241 242 6.653526 TCACCAAAACAAGTGAATGATCAT 57.346 33.333 1.18 1.18 39.96 2.45
242 243 6.448852 TCACCAAAACAAGTGAATGATCATG 58.551 36.000 9.46 0.00 39.96 3.07
244 245 7.230309 TCACCAAAACAAGTGAATGATCATGTA 59.770 33.333 9.46 0.00 39.96 2.29
245 246 7.539710 CACCAAAACAAGTGAATGATCATGTAG 59.460 37.037 9.46 0.00 38.01 2.74
246 247 7.031372 CCAAAACAAGTGAATGATCATGTAGG 58.969 38.462 9.46 3.26 38.01 3.18
247 248 7.094248 CCAAAACAAGTGAATGATCATGTAGGA 60.094 37.037 9.46 0.00 38.01 2.94
248 249 8.464404 CAAAACAAGTGAATGATCATGTAGGAT 58.536 33.333 9.46 0.00 38.01 3.24
249 250 9.685276 AAAACAAGTGAATGATCATGTAGGATA 57.315 29.630 9.46 0.00 38.01 2.59
282 283 6.906157 ATATCATCCAACAAGCATTAAGGG 57.094 37.500 0.00 0.00 0.00 3.95
283 284 4.046286 TCATCCAACAAGCATTAAGGGT 57.954 40.909 0.00 0.00 0.00 4.34
284 285 5.186256 TCATCCAACAAGCATTAAGGGTA 57.814 39.130 0.00 0.00 0.00 3.69
285 286 5.192927 TCATCCAACAAGCATTAAGGGTAG 58.807 41.667 0.00 0.00 0.00 3.18
286 287 3.352648 TCCAACAAGCATTAAGGGTAGC 58.647 45.455 0.00 0.00 0.00 3.58
287 288 3.088532 CCAACAAGCATTAAGGGTAGCA 58.911 45.455 0.00 0.00 0.00 3.49
288 289 3.701040 CCAACAAGCATTAAGGGTAGCAT 59.299 43.478 0.00 0.00 0.00 3.79
289 290 4.887071 CCAACAAGCATTAAGGGTAGCATA 59.113 41.667 0.00 0.00 0.00 3.14
290 291 5.536161 CCAACAAGCATTAAGGGTAGCATAT 59.464 40.000 0.00 0.00 0.00 1.78
293 294 6.546484 ACAAGCATTAAGGGTAGCATATGAT 58.454 36.000 6.97 1.82 0.00 2.45
294 295 6.656693 ACAAGCATTAAGGGTAGCATATGATC 59.343 38.462 6.97 0.00 0.00 2.92
295 296 6.378661 AGCATTAAGGGTAGCATATGATCA 57.621 37.500 6.97 0.00 0.00 2.92
298 299 7.175641 AGCATTAAGGGTAGCATATGATCAAAC 59.824 37.037 6.97 0.00 0.00 2.93
299 300 7.040478 GCATTAAGGGTAGCATATGATCAAACA 60.040 37.037 6.97 0.00 0.00 2.83
300 301 7.801716 TTAAGGGTAGCATATGATCAAACAC 57.198 36.000 6.97 0.00 0.00 3.32
301 302 5.372343 AGGGTAGCATATGATCAAACACA 57.628 39.130 6.97 0.00 0.00 3.72
302 303 5.945310 AGGGTAGCATATGATCAAACACAT 58.055 37.500 6.97 0.00 0.00 3.21
303 304 5.766670 AGGGTAGCATATGATCAAACACATG 59.233 40.000 6.97 0.00 0.00 3.21
304 305 5.764686 GGGTAGCATATGATCAAACACATGA 59.235 40.000 6.97 0.00 27.49 3.07
318 319 8.394971 TCAAACACATGATCAAACAAGTATCT 57.605 30.769 0.00 0.00 0.00 1.98
319 320 8.506437 TCAAACACATGATCAAACAAGTATCTC 58.494 33.333 0.00 0.00 0.00 2.75
320 321 7.984422 AACACATGATCAAACAAGTATCTCA 57.016 32.000 0.00 0.00 0.00 3.27
321 322 8.571461 AACACATGATCAAACAAGTATCTCAT 57.429 30.769 0.00 0.00 0.00 2.90
322 323 9.671279 AACACATGATCAAACAAGTATCTCATA 57.329 29.630 0.00 0.00 0.00 2.15
323 324 9.671279 ACACATGATCAAACAAGTATCTCATAA 57.329 29.630 0.00 0.00 0.00 1.90
328 329 9.942850 TGATCAAACAAGTATCTCATAAGAACA 57.057 29.630 0.00 0.00 34.49 3.18
342 343 9.534565 TCTCATAAGAACATAAAGTAGCATCAC 57.465 33.333 0.00 0.00 0.00 3.06
343 344 9.317936 CTCATAAGAACATAAAGTAGCATCACA 57.682 33.333 0.00 0.00 0.00 3.58
348 349 8.565896 AGAACATAAAGTAGCATCACAAATCA 57.434 30.769 0.00 0.00 0.00 2.57
349 350 8.671921 AGAACATAAAGTAGCATCACAAATCAG 58.328 33.333 0.00 0.00 0.00 2.90
350 351 7.325660 ACATAAAGTAGCATCACAAATCAGG 57.674 36.000 0.00 0.00 0.00 3.86
352 353 2.648059 AGTAGCATCACAAATCAGGCC 58.352 47.619 0.00 0.00 0.00 5.19
353 354 1.678101 GTAGCATCACAAATCAGGCCC 59.322 52.381 0.00 0.00 0.00 5.80
354 355 0.040058 AGCATCACAAATCAGGCCCA 59.960 50.000 0.00 0.00 0.00 5.36
355 356 0.896923 GCATCACAAATCAGGCCCAA 59.103 50.000 0.00 0.00 0.00 4.12
358 359 3.788937 CATCACAAATCAGGCCCAAATC 58.211 45.455 0.00 0.00 0.00 2.17
359 360 3.173953 TCACAAATCAGGCCCAAATCT 57.826 42.857 0.00 0.00 0.00 2.40
360 361 2.827322 TCACAAATCAGGCCCAAATCTG 59.173 45.455 0.00 0.00 0.00 2.90
361 362 2.093869 CACAAATCAGGCCCAAATCTGG 60.094 50.000 0.00 0.00 43.10 3.86
372 373 1.117150 CAAATCTGGGCCAGGAATGG 58.883 55.000 32.23 15.00 31.51 3.16
373 374 0.031817 AAATCTGGGCCAGGAATGGG 60.032 55.000 32.23 7.05 31.51 4.00
374 375 1.224003 AATCTGGGCCAGGAATGGGT 61.224 55.000 32.23 0.00 31.51 4.51
376 377 2.534011 TGGGCCAGGAATGGGTCA 60.534 61.111 0.00 0.00 0.00 4.02
377 378 2.043953 GGGCCAGGAATGGGTCAC 60.044 66.667 4.39 0.00 0.00 3.67
378 379 2.763215 GGCCAGGAATGGGTCACA 59.237 61.111 0.00 0.00 0.00 3.58
379 380 1.678970 GGCCAGGAATGGGTCACAC 60.679 63.158 0.00 0.00 0.00 3.82
380 381 2.040544 GCCAGGAATGGGTCACACG 61.041 63.158 0.00 0.00 0.00 4.49
383 384 3.124921 GGAATGGGTCACACGGCG 61.125 66.667 4.80 4.80 0.00 6.46
384 385 3.124921 GAATGGGTCACACGGCGG 61.125 66.667 13.24 2.35 0.00 6.13
385 386 3.599285 GAATGGGTCACACGGCGGA 62.599 63.158 13.24 0.00 0.00 5.54
386 387 3.894547 AATGGGTCACACGGCGGAC 62.895 63.158 13.24 9.15 0.00 4.79
397 398 3.785499 GGCGGACGAAAAGCGGAC 61.785 66.667 0.00 0.00 46.49 4.79
398 399 4.130281 GCGGACGAAAAGCGGACG 62.130 66.667 0.00 0.00 46.49 4.79
399 400 2.732094 CGGACGAAAAGCGGACGT 60.732 61.111 0.00 0.00 46.49 4.34
400 401 2.851104 GGACGAAAAGCGGACGTG 59.149 61.111 0.00 0.00 46.49 4.49
401 402 2.170273 GACGAAAAGCGGACGTGC 59.830 61.111 0.00 0.00 46.49 5.34
403 404 3.698463 CGAAAAGCGGACGTGCGT 61.698 61.111 29.81 14.45 40.67 5.24
404 405 2.170273 GAAAAGCGGACGTGCGTC 59.830 61.111 29.81 21.29 43.87 5.19
412 413 3.708734 GACGTGCGTCCGTTTGGG 61.709 66.667 13.11 0.00 41.98 4.12
413 414 4.534141 ACGTGCGTCCGTTTGGGT 62.534 61.111 0.00 0.00 37.96 4.51
414 415 3.708734 CGTGCGTCCGTTTGGGTC 61.709 66.667 0.00 0.00 37.00 4.46
416 417 4.973055 TGCGTCCGTTTGGGTCGG 62.973 66.667 0.00 0.00 45.73 4.79
432 433 3.292159 GGCGGGCCGACTTTTGTT 61.292 61.111 33.44 0.00 0.00 2.83
433 434 2.725641 GCGGGCCGACTTTTGTTT 59.274 55.556 33.44 0.00 0.00 2.83
435 436 1.212455 GCGGGCCGACTTTTGTTTTG 61.212 55.000 33.44 0.00 0.00 2.44
436 437 0.101579 CGGGCCGACTTTTGTTTTGT 59.898 50.000 24.41 0.00 0.00 2.83
437 438 1.470112 CGGGCCGACTTTTGTTTTGTT 60.470 47.619 24.41 0.00 0.00 2.83
439 440 3.004171 GGGCCGACTTTTGTTTTGTTTT 58.996 40.909 0.00 0.00 0.00 2.43
440 441 3.181515 GGGCCGACTTTTGTTTTGTTTTG 60.182 43.478 0.00 0.00 0.00 2.44
441 442 3.680458 GGCCGACTTTTGTTTTGTTTTGA 59.320 39.130 0.00 0.00 0.00 2.69
442 443 4.434989 GGCCGACTTTTGTTTTGTTTTGAC 60.435 41.667 0.00 0.00 0.00 3.18
443 444 4.434989 GCCGACTTTTGTTTTGTTTTGACC 60.435 41.667 0.00 0.00 0.00 4.02
444 445 4.092237 CCGACTTTTGTTTTGTTTTGACCC 59.908 41.667 0.00 0.00 0.00 4.46
445 446 4.686554 CGACTTTTGTTTTGTTTTGACCCA 59.313 37.500 0.00 0.00 0.00 4.51
446 447 5.177696 CGACTTTTGTTTTGTTTTGACCCAA 59.822 36.000 0.00 0.00 0.00 4.12
447 448 6.292919 CGACTTTTGTTTTGTTTTGACCCAAA 60.293 34.615 0.00 0.00 0.00 3.28
448 449 6.730175 ACTTTTGTTTTGTTTTGACCCAAAC 58.270 32.000 0.00 0.00 32.79 2.93
451 452 3.006537 TGTTTTGTTTTGACCCAAACGGA 59.993 39.130 0.00 0.00 32.79 4.69
453 454 0.733729 TGTTTTGACCCAAACGGACG 59.266 50.000 0.00 0.00 32.79 4.79
454 455 0.593008 GTTTTGACCCAAACGGACGC 60.593 55.000 0.00 0.00 32.79 5.19
455 456 2.049475 TTTTGACCCAAACGGACGCG 62.049 55.000 3.53 3.53 32.79 6.01
466 467 3.115892 GGACGCGCACGGATGAAA 61.116 61.111 5.73 0.00 46.04 2.69
467 468 2.095843 GACGCGCACGGATGAAAC 59.904 61.111 5.73 0.00 46.04 2.78
468 469 3.680072 GACGCGCACGGATGAAACG 62.680 63.158 5.73 0.00 46.04 3.60
469 470 4.499023 CGCGCACGGATGAAACGG 62.499 66.667 8.75 0.00 34.97 4.44
472 473 2.736682 CGCACGGATGAAACGGGTC 61.737 63.158 0.00 0.00 37.02 4.46
475 476 1.375523 ACGGATGAAACGGGTCAGC 60.376 57.895 0.00 0.00 35.23 4.26
476 477 2.452813 CGGATGAAACGGGTCAGCG 61.453 63.158 0.61 0.00 34.69 5.18
477 478 2.750888 GGATGAAACGGGTCAGCGC 61.751 63.158 0.00 0.00 34.69 5.92
478 479 2.031919 ATGAAACGGGTCAGCGCA 59.968 55.556 11.47 0.00 0.00 6.09
481 482 1.154225 GAAACGGGTCAGCGCATTG 60.154 57.895 11.47 0.00 0.00 2.82
482 483 2.527547 GAAACGGGTCAGCGCATTGG 62.528 60.000 11.47 0.00 0.00 3.16
483 484 3.545124 AACGGGTCAGCGCATTGGA 62.545 57.895 11.47 0.00 0.00 3.53
484 485 3.197790 CGGGTCAGCGCATTGGAG 61.198 66.667 11.47 0.00 0.00 3.86
485 486 2.045926 GGGTCAGCGCATTGGAGT 60.046 61.111 11.47 0.00 0.00 3.85
487 488 0.811616 GGGTCAGCGCATTGGAGTAG 60.812 60.000 11.47 0.00 0.00 2.57
488 489 1.432270 GGTCAGCGCATTGGAGTAGC 61.432 60.000 11.47 0.00 0.00 3.58
490 491 0.179100 TCAGCGCATTGGAGTAGCTC 60.179 55.000 11.47 0.00 35.82 4.09
491 492 0.179089 CAGCGCATTGGAGTAGCTCT 60.179 55.000 11.47 0.00 35.82 4.09
493 494 1.757118 AGCGCATTGGAGTAGCTCTTA 59.243 47.619 11.47 0.00 31.94 2.10
495 496 2.474816 CGCATTGGAGTAGCTCTTACC 58.525 52.381 0.00 0.00 32.37 2.85
496 497 2.159099 CGCATTGGAGTAGCTCTTACCA 60.159 50.000 0.00 0.00 32.37 3.25
498 499 3.118592 GCATTGGAGTAGCTCTTACCACT 60.119 47.826 0.00 0.00 32.37 4.00
499 500 4.624125 GCATTGGAGTAGCTCTTACCACTT 60.624 45.833 0.00 0.00 32.37 3.16
500 501 5.395324 GCATTGGAGTAGCTCTTACCACTTA 60.395 44.000 0.00 0.00 32.37 2.24
501 502 6.686632 GCATTGGAGTAGCTCTTACCACTTAT 60.687 42.308 0.00 0.00 32.37 1.73
502 503 6.466885 TTGGAGTAGCTCTTACCACTTATC 57.533 41.667 0.00 0.00 32.37 1.75
503 504 5.516044 TGGAGTAGCTCTTACCACTTATCA 58.484 41.667 0.00 0.00 32.37 2.15
504 505 5.360144 TGGAGTAGCTCTTACCACTTATCAC 59.640 44.000 0.00 0.00 32.37 3.06
505 506 5.221283 GGAGTAGCTCTTACCACTTATCACC 60.221 48.000 0.00 0.00 32.37 4.02
506 507 5.269991 AGTAGCTCTTACCACTTATCACCA 58.730 41.667 0.00 0.00 32.37 4.17
507 508 5.900123 AGTAGCTCTTACCACTTATCACCAT 59.100 40.000 0.00 0.00 32.37 3.55
508 509 7.067421 AGTAGCTCTTACCACTTATCACCATA 58.933 38.462 0.00 0.00 32.37 2.74
509 510 6.163135 AGCTCTTACCACTTATCACCATAC 57.837 41.667 0.00 0.00 0.00 2.39
510 511 5.661312 AGCTCTTACCACTTATCACCATACA 59.339 40.000 0.00 0.00 0.00 2.29
511 512 6.156256 AGCTCTTACCACTTATCACCATACAA 59.844 38.462 0.00 0.00 0.00 2.41
512 513 6.821665 GCTCTTACCACTTATCACCATACAAA 59.178 38.462 0.00 0.00 0.00 2.83
513 514 7.201617 GCTCTTACCACTTATCACCATACAAAC 60.202 40.741 0.00 0.00 0.00 2.93
514 515 7.913789 TCTTACCACTTATCACCATACAAACT 58.086 34.615 0.00 0.00 0.00 2.66
515 516 9.038072 TCTTACCACTTATCACCATACAAACTA 57.962 33.333 0.00 0.00 0.00 2.24
516 517 9.095065 CTTACCACTTATCACCATACAAACTAC 57.905 37.037 0.00 0.00 0.00 2.73
517 518 7.011499 ACCACTTATCACCATACAAACTACA 57.989 36.000 0.00 0.00 0.00 2.74
518 519 7.630082 ACCACTTATCACCATACAAACTACAT 58.370 34.615 0.00 0.00 0.00 2.29
519 520 8.764558 ACCACTTATCACCATACAAACTACATA 58.235 33.333 0.00 0.00 0.00 2.29
520 521 9.607988 CCACTTATCACCATACAAACTACATAA 57.392 33.333 0.00 0.00 0.00 1.90
524 525 9.961264 TTATCACCATACAAACTACATAAACCA 57.039 29.630 0.00 0.00 0.00 3.67
525 526 7.675962 TCACCATACAAACTACATAAACCAC 57.324 36.000 0.00 0.00 0.00 4.16
526 527 7.225011 TCACCATACAAACTACATAAACCACA 58.775 34.615 0.00 0.00 0.00 4.17
528 529 7.174253 CACCATACAAACTACATAAACCACAGT 59.826 37.037 0.00 0.00 0.00 3.55
543 544 5.852282 ACCACAGTTTAAAATGCAAGACT 57.148 34.783 15.16 0.00 0.00 3.24
544 545 6.220726 ACCACAGTTTAAAATGCAAGACTT 57.779 33.333 15.16 0.00 0.00 3.01
545 546 7.341445 ACCACAGTTTAAAATGCAAGACTTA 57.659 32.000 15.16 0.00 0.00 2.24
547 548 7.284489 ACCACAGTTTAAAATGCAAGACTTAGA 59.716 33.333 15.16 0.00 0.00 2.10
548 549 7.805071 CCACAGTTTAAAATGCAAGACTTAGAG 59.195 37.037 15.16 0.00 0.00 2.43
549 550 7.324616 CACAGTTTAAAATGCAAGACTTAGAGC 59.675 37.037 15.16 0.00 0.00 4.09
550 551 7.013274 ACAGTTTAAAATGCAAGACTTAGAGCA 59.987 33.333 15.16 1.60 41.73 4.26
552 553 7.862873 AGTTTAAAATGCAAGACTTAGAGCAAC 59.137 33.333 3.12 0.00 40.76 4.17
553 554 7.510549 TTAAAATGCAAGACTTAGAGCAACT 57.489 32.000 3.12 0.00 40.76 3.16
554 555 5.619625 AAATGCAAGACTTAGAGCAACTC 57.380 39.130 3.12 0.00 40.76 3.01
555 556 3.045601 TGCAAGACTTAGAGCAACTCC 57.954 47.619 0.00 0.00 33.48 3.85
556 557 2.368548 TGCAAGACTTAGAGCAACTCCA 59.631 45.455 0.00 0.00 33.48 3.86
558 559 4.006319 GCAAGACTTAGAGCAACTCCAAT 58.994 43.478 0.00 0.00 0.00 3.16
559 560 5.178797 GCAAGACTTAGAGCAACTCCAATA 58.821 41.667 0.00 0.00 0.00 1.90
560 561 5.293079 GCAAGACTTAGAGCAACTCCAATAG 59.707 44.000 0.00 0.00 0.00 1.73
561 562 5.017294 AGACTTAGAGCAACTCCAATAGC 57.983 43.478 0.00 0.00 0.00 2.97
564 565 2.015736 AGAGCAACTCCAATAGCGTG 57.984 50.000 0.00 0.00 0.00 5.34
565 566 1.276421 AGAGCAACTCCAATAGCGTGT 59.724 47.619 0.00 0.00 0.00 4.49
566 567 1.661112 GAGCAACTCCAATAGCGTGTC 59.339 52.381 0.00 0.00 0.00 3.67
567 568 1.276421 AGCAACTCCAATAGCGTGTCT 59.724 47.619 0.00 0.00 0.00 3.41
569 570 3.133003 AGCAACTCCAATAGCGTGTCTAT 59.867 43.478 0.00 0.00 39.62 1.98
570 571 3.871594 GCAACTCCAATAGCGTGTCTATT 59.128 43.478 0.00 0.00 46.18 1.73
571 572 4.025647 GCAACTCCAATAGCGTGTCTATTC 60.026 45.833 0.00 0.00 44.08 1.75
572 573 5.109210 CAACTCCAATAGCGTGTCTATTCA 58.891 41.667 0.00 0.00 44.08 2.57
573 574 5.537300 ACTCCAATAGCGTGTCTATTCAT 57.463 39.130 0.00 0.00 44.08 2.57
575 576 7.050970 ACTCCAATAGCGTGTCTATTCATAA 57.949 36.000 0.00 0.00 44.08 1.90
576 577 7.497595 ACTCCAATAGCGTGTCTATTCATAAA 58.502 34.615 0.00 0.00 44.08 1.40
577 578 7.985184 ACTCCAATAGCGTGTCTATTCATAAAA 59.015 33.333 0.00 0.00 44.08 1.52
596 597 3.615224 AAAAGGCTATCGTTTACGGGA 57.385 42.857 2.09 0.00 40.29 5.14
597 598 3.615224 AAAGGCTATCGTTTACGGGAA 57.385 42.857 2.09 0.00 40.29 3.97
598 599 3.832615 AAGGCTATCGTTTACGGGAAT 57.167 42.857 2.09 0.00 40.29 3.01
599 600 3.832615 AGGCTATCGTTTACGGGAATT 57.167 42.857 2.09 0.00 40.29 2.17
601 602 4.879598 AGGCTATCGTTTACGGGAATTAG 58.120 43.478 2.09 0.00 40.29 1.73
602 603 4.586001 AGGCTATCGTTTACGGGAATTAGA 59.414 41.667 2.09 0.00 40.29 2.10
603 604 4.922103 GGCTATCGTTTACGGGAATTAGAG 59.078 45.833 2.09 0.00 40.29 2.43
606 607 3.099141 TCGTTTACGGGAATTAGAGGGT 58.901 45.455 2.09 0.00 40.29 4.34
607 608 3.515104 TCGTTTACGGGAATTAGAGGGTT 59.485 43.478 2.09 0.00 40.29 4.11
608 609 4.020307 TCGTTTACGGGAATTAGAGGGTTT 60.020 41.667 2.09 0.00 40.29 3.27
633 634 1.021968 GTGGGCCAATATTGTCGGAC 58.978 55.000 8.40 0.00 0.00 4.79
646 3825 0.595825 GTCGGACGTCCAAACTCGTT 60.596 55.000 32.80 0.00 40.39 3.85
658 3838 3.682792 CTCGTTCAGACGGGGTCT 58.317 61.111 0.00 0.00 45.96 3.85
674 3854 1.490490 GGTCTATGTTGGAGATGCCCA 59.510 52.381 0.00 0.00 34.97 5.36
681 3861 3.384168 TGTTGGAGATGCCCATAGTACT 58.616 45.455 0.00 0.00 35.87 2.73
690 3870 7.285858 GGAGATGCCCATAGTACTTATAGGTAG 59.714 44.444 0.00 0.00 0.00 3.18
801 4000 1.076850 TGGGGACGTATCGTAGGCA 60.077 57.895 0.00 0.00 41.37 4.75
807 4018 1.360551 CGTATCGTAGGCAGCTGCT 59.639 57.895 35.82 23.99 41.70 4.24
808 4019 0.936764 CGTATCGTAGGCAGCTGCTG 60.937 60.000 35.82 24.80 41.70 4.41
809 4020 0.103208 GTATCGTAGGCAGCTGCTGT 59.897 55.000 35.82 25.56 41.70 4.40
810 4021 0.824109 TATCGTAGGCAGCTGCTGTT 59.176 50.000 35.82 23.66 41.70 3.16
811 4022 0.742281 ATCGTAGGCAGCTGCTGTTG 60.742 55.000 35.82 23.28 41.70 3.33
816 4027 2.126965 GCAGCTGCTGTTGCTTCG 60.127 61.111 31.33 3.29 45.15 3.79
817 4028 2.610694 GCAGCTGCTGTTGCTTCGA 61.611 57.895 31.33 0.00 45.15 3.71
818 4029 1.496393 CAGCTGCTGTTGCTTCGAG 59.504 57.895 21.21 0.00 38.92 4.04
875 4088 2.417516 CGGAGTATGCTGACGGGG 59.582 66.667 0.00 0.00 0.00 5.73
894 4107 0.461516 GAACCGGAATCGAAGTCCCC 60.462 60.000 9.46 0.00 39.00 4.81
912 4128 2.906389 CCCCTGTATATAAGCAGAGGCA 59.094 50.000 8.07 0.00 44.61 4.75
970 4188 3.069729 GTCCACGATTAGGAAGCTGGTAT 59.930 47.826 0.00 0.00 36.80 2.73
1051 4271 2.249844 ACGACATCCCTTGTTTTCGT 57.750 45.000 0.00 0.00 39.18 3.85
1083 4303 1.525077 CGAGGAGGAGACGCTAGCT 60.525 63.158 13.93 0.00 0.00 3.32
1092 4312 0.109723 AGACGCTAGCTCCTAGGAGG 59.890 60.000 34.75 22.08 42.19 4.30
1098 4318 1.353022 CTAGCTCCTAGGAGGACCGAT 59.647 57.143 34.75 15.01 40.06 4.18
1111 4337 2.284798 GACCGATCAGCGCCTCTTCA 62.285 60.000 2.29 0.00 39.11 3.02
1132 4358 0.239347 CACCGACGTCTACCTCGTTT 59.761 55.000 14.70 0.00 41.64 3.60
1149 4381 1.701031 TTTGTCCGGGGAGAACAGCA 61.701 55.000 0.00 0.00 0.00 4.41
1218 4453 0.611896 TCATGCTCGGGAGTCTGTCA 60.612 55.000 0.00 0.00 0.00 3.58
1269 4504 1.003233 GGTGGAGCTGGACAAGGAC 60.003 63.158 0.00 0.00 0.00 3.85
1282 4517 4.707448 TGGACAAGGACTTTTGCTTTTACA 59.293 37.500 0.00 0.00 29.29 2.41
1384 4625 1.511768 GGTTTCGCTCTAGCTCCGT 59.488 57.895 0.00 0.00 39.32 4.69
1500 4741 3.149648 GGCGGCAATGGCAAGGAT 61.150 61.111 7.75 0.00 43.71 3.24
1522 4763 5.648178 TGTTCGACAGGTTGTAGCTATAA 57.352 39.130 0.00 0.00 0.00 0.98
1587 4837 7.379797 TCGATGATGTAATCTTGAATTCGTCTC 59.620 37.037 0.04 0.00 45.81 3.36
1593 4843 8.007405 TGTAATCTTGAATTCGTCTCTGGATA 57.993 34.615 0.04 0.00 0.00 2.59
1854 5112 0.947244 GCTGAGGATATTTGGGCGTG 59.053 55.000 0.00 0.00 0.00 5.34
1859 5117 1.564348 AGGATATTTGGGCGTGGAACT 59.436 47.619 0.00 0.00 31.75 3.01
1863 5121 1.184970 ATTTGGGCGTGGAACTTGGG 61.185 55.000 0.00 0.00 31.75 4.12
1879 5137 5.466127 ACTTGGGGAGGCATTCTAATTTA 57.534 39.130 0.00 0.00 0.00 1.40
1933 5191 7.881232 CCACTAGTAGAAAAAGGGTCAAATGTA 59.119 37.037 3.59 0.00 0.00 2.29
1937 5195 8.762481 AGTAGAAAAAGGGTCAAATGTAAAGT 57.238 30.769 0.00 0.00 0.00 2.66
2036 5294 1.523154 TTAGTACCGGTTCGTGGCGT 61.523 55.000 15.04 0.00 0.00 5.68
2043 5301 1.223417 CGGTTCGTGGCGTACCTTTT 61.223 55.000 13.65 0.00 43.37 2.27
2077 5335 2.867647 GCCACGAACCGGTACTAAAGTT 60.868 50.000 8.00 0.00 0.00 2.66
2103 5361 2.028112 GTGGCAGGATGTTGTCAGTCTA 60.028 50.000 0.00 0.00 39.31 2.59
2129 5387 1.906574 CCTCCAGCACCTTTAGTACCA 59.093 52.381 0.00 0.00 0.00 3.25
2165 5423 3.217626 CCGGTACTAAAGGTCGTCCTAT 58.782 50.000 0.37 0.00 44.35 2.57
2210 5468 2.057922 TGCTCTGTTCTTCCCCTTTCT 58.942 47.619 0.00 0.00 0.00 2.52
2481 5740 6.594159 ACACTTAGTTTGCATATGTAGGTGTC 59.406 38.462 10.54 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.011277 GCGACGACGTTTTTCAATACTATTT 58.989 36.000 9.33 0.00 41.98 1.40
30 31 5.346822 AGCGACGACGTTTTTCAATACTATT 59.653 36.000 9.33 0.00 41.98 1.73
31 32 4.860907 AGCGACGACGTTTTTCAATACTAT 59.139 37.500 9.33 0.00 41.98 2.12
32 33 4.229096 AGCGACGACGTTTTTCAATACTA 58.771 39.130 9.33 0.00 41.98 1.82
35 36 4.025896 TCAAAGCGACGACGTTTTTCAATA 60.026 37.500 17.76 1.58 46.99 1.90
36 37 3.033185 CAAAGCGACGACGTTTTTCAAT 58.967 40.909 17.76 0.00 46.99 2.57
38 39 1.659601 TCAAAGCGACGACGTTTTTCA 59.340 42.857 17.76 6.64 46.99 2.69
39 40 2.034339 TCTCAAAGCGACGACGTTTTTC 60.034 45.455 17.76 0.00 46.99 2.29
40 41 1.928503 TCTCAAAGCGACGACGTTTTT 59.071 42.857 17.76 11.53 46.99 1.94
42 43 1.521423 CTTCTCAAAGCGACGACGTTT 59.479 47.619 9.33 6.33 43.99 3.60
43 44 1.129326 CTTCTCAAAGCGACGACGTT 58.871 50.000 9.33 0.00 41.98 3.99
45 46 1.959747 TACTTCTCAAAGCGACGACG 58.040 50.000 2.12 2.12 42.93 5.12
46 47 3.059570 CACATACTTCTCAAAGCGACGAC 59.940 47.826 0.00 0.00 35.81 4.34
47 48 3.057806 TCACATACTTCTCAAAGCGACGA 60.058 43.478 0.00 0.00 35.81 4.20
48 49 3.242518 TCACATACTTCTCAAAGCGACG 58.757 45.455 0.00 0.00 35.81 5.12
49 50 6.508721 GCTTATCACATACTTCTCAAAGCGAC 60.509 42.308 0.00 0.00 35.81 5.19
50 51 5.520288 GCTTATCACATACTTCTCAAAGCGA 59.480 40.000 0.00 0.00 35.81 4.93
52 53 6.668541 TGCTTATCACATACTTCTCAAAGC 57.331 37.500 0.00 0.00 35.81 3.51
53 54 8.484641 TCTTGCTTATCACATACTTCTCAAAG 57.515 34.615 0.00 0.00 38.54 2.77
54 55 7.065085 GCTCTTGCTTATCACATACTTCTCAAA 59.935 37.037 0.00 0.00 36.03 2.69
55 56 6.536582 GCTCTTGCTTATCACATACTTCTCAA 59.463 38.462 0.00 0.00 36.03 3.02
56 57 6.045318 GCTCTTGCTTATCACATACTTCTCA 58.955 40.000 0.00 0.00 36.03 3.27
73 74 1.492599 AGATTTAGGGGGAGCTCTTGC 59.507 52.381 14.64 0.00 40.05 4.01
74 75 4.805609 GCATAGATTTAGGGGGAGCTCTTG 60.806 50.000 14.64 0.00 0.00 3.02
75 76 3.329225 GCATAGATTTAGGGGGAGCTCTT 59.671 47.826 14.64 0.00 0.00 2.85
76 77 2.909662 GCATAGATTTAGGGGGAGCTCT 59.090 50.000 14.64 0.00 0.00 4.09
77 78 2.639839 TGCATAGATTTAGGGGGAGCTC 59.360 50.000 4.71 4.71 0.00 4.09
78 79 2.706350 TGCATAGATTTAGGGGGAGCT 58.294 47.619 0.00 0.00 0.00 4.09
80 81 9.753674 TTAAATAATGCATAGATTTAGGGGGAG 57.246 33.333 18.75 0.00 0.00 4.30
120 121 9.078452 TGATCCTAATCGATTGTGCATTTGCAT 62.078 37.037 20.87 0.00 43.12 3.96
121 122 7.848362 TGATCCTAATCGATTGTGCATTTGCA 61.848 38.462 20.87 0.05 40.86 4.08
124 125 6.889301 ATGATCCTAATCGATTGTGCATTT 57.111 33.333 20.87 0.00 34.39 2.32
125 126 6.492007 GATGATCCTAATCGATTGTGCATT 57.508 37.500 20.87 0.73 34.39 3.56
135 136 5.630661 AGAGTAACCGATGATCCTAATCG 57.369 43.478 6.88 6.88 45.08 3.34
136 137 6.015350 TGGAAGAGTAACCGATGATCCTAATC 60.015 42.308 0.00 0.00 0.00 1.75
137 138 5.839063 TGGAAGAGTAACCGATGATCCTAAT 59.161 40.000 0.00 0.00 0.00 1.73
139 140 4.800023 TGGAAGAGTAACCGATGATCCTA 58.200 43.478 0.00 0.00 0.00 2.94
141 142 4.202264 ACATGGAAGAGTAACCGATGATCC 60.202 45.833 0.00 0.00 0.00 3.36
142 143 4.950050 ACATGGAAGAGTAACCGATGATC 58.050 43.478 0.00 0.00 0.00 2.92
143 144 4.405680 TGACATGGAAGAGTAACCGATGAT 59.594 41.667 0.00 0.00 0.00 2.45
144 145 3.767131 TGACATGGAAGAGTAACCGATGA 59.233 43.478 0.00 0.00 0.00 2.92
145 146 3.865745 GTGACATGGAAGAGTAACCGATG 59.134 47.826 0.00 0.00 0.00 3.84
147 148 2.894765 TGTGACATGGAAGAGTAACCGA 59.105 45.455 0.00 0.00 0.00 4.69
149 150 5.730550 TGTATGTGACATGGAAGAGTAACC 58.269 41.667 8.61 0.00 31.20 2.85
162 163 3.619733 GCTCCACCAAGATGTATGTGACA 60.620 47.826 0.00 0.00 43.97 3.58
163 164 2.939103 GCTCCACCAAGATGTATGTGAC 59.061 50.000 0.00 0.00 0.00 3.67
164 165 2.418609 CGCTCCACCAAGATGTATGTGA 60.419 50.000 0.00 0.00 0.00 3.58
165 166 1.935873 CGCTCCACCAAGATGTATGTG 59.064 52.381 0.00 0.00 0.00 3.21
166 167 1.743772 GCGCTCCACCAAGATGTATGT 60.744 52.381 0.00 0.00 0.00 2.29
167 168 0.940126 GCGCTCCACCAAGATGTATG 59.060 55.000 0.00 0.00 0.00 2.39
168 169 0.833287 AGCGCTCCACCAAGATGTAT 59.167 50.000 2.64 0.00 0.00 2.29
170 171 1.078848 GAGCGCTCCACCAAGATGT 60.079 57.895 27.22 0.00 0.00 3.06
171 172 0.674581 TTGAGCGCTCCACCAAGATG 60.675 55.000 33.23 0.00 0.00 2.90
172 173 0.036732 TTTGAGCGCTCCACCAAGAT 59.963 50.000 33.23 0.00 0.00 2.40
175 176 0.597568 CATTTTGAGCGCTCCACCAA 59.402 50.000 33.23 19.27 0.00 3.67
176 177 0.250684 TCATTTTGAGCGCTCCACCA 60.251 50.000 33.23 13.95 0.00 4.17
177 178 1.098050 ATCATTTTGAGCGCTCCACC 58.902 50.000 33.23 11.13 0.00 4.61
178 179 3.198068 TCTATCATTTTGAGCGCTCCAC 58.802 45.455 33.23 11.53 0.00 4.02
179 180 3.541996 TCTATCATTTTGAGCGCTCCA 57.458 42.857 33.23 21.55 0.00 3.86
180 181 3.873952 AGTTCTATCATTTTGAGCGCTCC 59.126 43.478 33.23 16.56 0.00 4.70
182 183 6.985188 TTAAGTTCTATCATTTTGAGCGCT 57.015 33.333 11.27 11.27 0.00 5.92
183 184 6.195428 GCTTTAAGTTCTATCATTTTGAGCGC 59.805 38.462 0.00 0.00 0.00 5.92
184 185 7.243487 TGCTTTAAGTTCTATCATTTTGAGCG 58.757 34.615 0.00 0.00 0.00 5.03
185 186 9.017669 CATGCTTTAAGTTCTATCATTTTGAGC 57.982 33.333 0.00 0.00 0.00 4.26
187 188 8.522003 TGCATGCTTTAAGTTCTATCATTTTGA 58.478 29.630 20.33 0.00 0.00 2.69
188 189 8.589629 GTGCATGCTTTAAGTTCTATCATTTTG 58.410 33.333 20.33 0.00 0.00 2.44
190 191 8.059798 AGTGCATGCTTTAAGTTCTATCATTT 57.940 30.769 20.33 0.00 0.00 2.32
194 195 6.668541 TGAGTGCATGCTTTAAGTTCTATC 57.331 37.500 20.33 1.45 0.00 2.08
195 196 6.825213 TGATGAGTGCATGCTTTAAGTTCTAT 59.175 34.615 20.33 0.00 34.11 1.98
197 198 5.005740 TGATGAGTGCATGCTTTAAGTTCT 58.994 37.500 20.33 4.37 34.11 3.01
198 199 5.091431 GTGATGAGTGCATGCTTTAAGTTC 58.909 41.667 20.33 7.80 34.11 3.01
199 200 4.082571 GGTGATGAGTGCATGCTTTAAGTT 60.083 41.667 20.33 0.00 34.11 2.66
200 201 3.441572 GGTGATGAGTGCATGCTTTAAGT 59.558 43.478 20.33 0.24 34.11 2.24
201 202 3.441222 TGGTGATGAGTGCATGCTTTAAG 59.559 43.478 20.33 0.00 34.11 1.85
202 203 3.419943 TGGTGATGAGTGCATGCTTTAA 58.580 40.909 20.33 2.57 34.11 1.52
203 204 3.070476 TGGTGATGAGTGCATGCTTTA 57.930 42.857 20.33 4.46 34.11 1.85
204 205 1.913778 TGGTGATGAGTGCATGCTTT 58.086 45.000 20.33 6.74 34.11 3.51
207 208 2.288334 TGTTTTGGTGATGAGTGCATGC 60.288 45.455 11.82 11.82 34.11 4.06
209 210 3.638160 ACTTGTTTTGGTGATGAGTGCAT 59.362 39.130 0.00 0.00 37.47 3.96
210 211 3.023119 ACTTGTTTTGGTGATGAGTGCA 58.977 40.909 0.00 0.00 0.00 4.57
211 212 3.066621 TCACTTGTTTTGGTGATGAGTGC 59.933 43.478 0.00 0.00 37.52 4.40
212 213 4.898829 TCACTTGTTTTGGTGATGAGTG 57.101 40.909 0.00 0.00 37.52 3.51
213 214 5.593909 TCATTCACTTGTTTTGGTGATGAGT 59.406 36.000 0.00 0.00 41.27 3.41
214 215 6.075762 TCATTCACTTGTTTTGGTGATGAG 57.924 37.500 0.00 0.00 41.27 2.90
215 216 6.264970 TGATCATTCACTTGTTTTGGTGATGA 59.735 34.615 0.00 0.00 41.27 2.92
216 217 6.448852 TGATCATTCACTTGTTTTGGTGATG 58.551 36.000 0.00 0.00 41.27 3.07
219 220 6.218019 ACATGATCATTCACTTGTTTTGGTG 58.782 36.000 5.16 0.00 33.85 4.17
221 222 7.031372 CCTACATGATCATTCACTTGTTTTGG 58.969 38.462 5.16 1.95 33.85 3.28
222 223 7.819644 TCCTACATGATCATTCACTTGTTTTG 58.180 34.615 5.16 0.00 33.85 2.44
223 224 8.585471 ATCCTACATGATCATTCACTTGTTTT 57.415 30.769 5.16 0.00 33.85 2.43
224 225 9.857656 ATATCCTACATGATCATTCACTTGTTT 57.142 29.630 5.16 0.00 33.85 2.83
251 252 9.584008 AATGCTTGTTGGATGATATTATCTCTT 57.416 29.630 7.36 0.00 0.00 2.85
256 257 9.028284 CCCTTAATGCTTGTTGGATGATATTAT 57.972 33.333 0.00 0.00 0.00 1.28
258 259 6.840705 ACCCTTAATGCTTGTTGGATGATATT 59.159 34.615 0.00 0.00 0.00 1.28
262 263 4.046286 ACCCTTAATGCTTGTTGGATGA 57.954 40.909 0.00 0.00 0.00 2.92
263 264 4.202050 GCTACCCTTAATGCTTGTTGGATG 60.202 45.833 0.00 0.00 0.00 3.51
265 266 3.245087 TGCTACCCTTAATGCTTGTTGGA 60.245 43.478 0.00 0.00 0.00 3.53
266 267 3.088532 TGCTACCCTTAATGCTTGTTGG 58.911 45.455 0.00 0.00 0.00 3.77
267 268 4.989279 ATGCTACCCTTAATGCTTGTTG 57.011 40.909 0.00 0.00 0.00 3.33
268 269 6.364701 TCATATGCTACCCTTAATGCTTGTT 58.635 36.000 0.00 0.00 0.00 2.83
269 270 5.940617 TCATATGCTACCCTTAATGCTTGT 58.059 37.500 0.00 0.00 0.00 3.16
270 271 6.656270 TGATCATATGCTACCCTTAATGCTTG 59.344 38.462 0.00 0.00 0.00 4.01
272 273 6.378661 TGATCATATGCTACCCTTAATGCT 57.621 37.500 0.00 0.00 0.00 3.79
273 274 7.040478 TGTTTGATCATATGCTACCCTTAATGC 60.040 37.037 0.00 0.00 0.00 3.56
275 276 7.998383 TGTGTTTGATCATATGCTACCCTTAAT 59.002 33.333 0.00 0.00 0.00 1.40
276 277 7.342581 TGTGTTTGATCATATGCTACCCTTAA 58.657 34.615 0.00 0.00 0.00 1.85
278 279 5.754782 TGTGTTTGATCATATGCTACCCTT 58.245 37.500 0.00 0.00 0.00 3.95
279 280 5.372343 TGTGTTTGATCATATGCTACCCT 57.628 39.130 0.00 0.00 0.00 4.34
280 281 5.764686 TCATGTGTTTGATCATATGCTACCC 59.235 40.000 0.00 0.00 37.04 3.69
293 294 8.394971 AGATACTTGTTTGATCATGTGTTTGA 57.605 30.769 0.00 0.00 0.00 2.69
294 295 8.291740 TGAGATACTTGTTTGATCATGTGTTTG 58.708 33.333 0.00 0.00 0.00 2.93
295 296 8.394971 TGAGATACTTGTTTGATCATGTGTTT 57.605 30.769 0.00 0.00 0.00 2.83
302 303 9.942850 TGTTCTTATGAGATACTTGTTTGATCA 57.057 29.630 0.00 0.00 0.00 2.92
318 319 9.665719 TTGTGATGCTACTTTATGTTCTTATGA 57.334 29.630 0.00 0.00 0.00 2.15
322 323 9.013229 TGATTTGTGATGCTACTTTATGTTCTT 57.987 29.630 0.00 0.00 0.00 2.52
323 324 8.565896 TGATTTGTGATGCTACTTTATGTTCT 57.434 30.769 0.00 0.00 0.00 3.01
324 325 7.912250 CCTGATTTGTGATGCTACTTTATGTTC 59.088 37.037 0.00 0.00 0.00 3.18
325 326 7.629222 GCCTGATTTGTGATGCTACTTTATGTT 60.629 37.037 0.00 0.00 0.00 2.71
327 328 6.204359 GCCTGATTTGTGATGCTACTTTATG 58.796 40.000 0.00 0.00 0.00 1.90
328 329 5.300286 GGCCTGATTTGTGATGCTACTTTAT 59.700 40.000 0.00 0.00 0.00 1.40
329 330 4.640201 GGCCTGATTTGTGATGCTACTTTA 59.360 41.667 0.00 0.00 0.00 1.85
331 332 3.019564 GGCCTGATTTGTGATGCTACTT 58.980 45.455 0.00 0.00 0.00 2.24
332 333 2.648059 GGCCTGATTTGTGATGCTACT 58.352 47.619 0.00 0.00 0.00 2.57
333 334 1.678101 GGGCCTGATTTGTGATGCTAC 59.322 52.381 0.84 0.00 0.00 3.58
334 335 1.284491 TGGGCCTGATTTGTGATGCTA 59.716 47.619 4.53 0.00 0.00 3.49
335 336 0.040058 TGGGCCTGATTTGTGATGCT 59.960 50.000 4.53 0.00 0.00 3.79
336 337 0.896923 TTGGGCCTGATTTGTGATGC 59.103 50.000 4.53 0.00 0.00 3.91
338 339 3.449737 CAGATTTGGGCCTGATTTGTGAT 59.550 43.478 4.53 0.00 32.37 3.06
339 340 2.827322 CAGATTTGGGCCTGATTTGTGA 59.173 45.455 4.53 0.00 32.37 3.58
340 341 2.093869 CCAGATTTGGGCCTGATTTGTG 60.094 50.000 4.53 0.00 41.05 3.33
342 343 2.973694 CCAGATTTGGGCCTGATTTG 57.026 50.000 4.53 4.26 41.05 2.32
352 353 1.117150 CATTCCTGGCCCAGATTTGG 58.883 55.000 13.74 0.00 44.60 3.28
353 354 1.117150 CCATTCCTGGCCCAGATTTG 58.883 55.000 13.74 6.07 35.23 2.32
354 355 0.031817 CCCATTCCTGGCCCAGATTT 60.032 55.000 13.74 0.00 41.64 2.17
355 356 1.224003 ACCCATTCCTGGCCCAGATT 61.224 55.000 13.74 0.00 41.64 2.40
358 359 2.276740 GACCCATTCCTGGCCCAG 59.723 66.667 2.91 2.91 41.64 4.45
359 360 2.534011 TGACCCATTCCTGGCCCA 60.534 61.111 0.00 0.00 41.64 5.36
360 361 2.043953 GTGACCCATTCCTGGCCC 60.044 66.667 0.00 0.00 41.64 5.80
361 362 1.678970 GTGTGACCCATTCCTGGCC 60.679 63.158 0.00 0.00 41.64 5.36
362 363 2.040544 CGTGTGACCCATTCCTGGC 61.041 63.158 0.00 0.00 41.64 4.85
363 364 1.377202 CCGTGTGACCCATTCCTGG 60.377 63.158 0.00 0.00 42.73 4.45
364 365 2.040544 GCCGTGTGACCCATTCCTG 61.041 63.158 0.00 0.00 0.00 3.86
365 366 2.351276 GCCGTGTGACCCATTCCT 59.649 61.111 0.00 0.00 0.00 3.36
366 367 3.124921 CGCCGTGTGACCCATTCC 61.125 66.667 0.00 0.00 0.00 3.01
372 373 4.651008 TTCGTCCGCCGTGTGACC 62.651 66.667 0.00 0.00 37.94 4.02
373 374 2.154427 CTTTTCGTCCGCCGTGTGAC 62.154 60.000 0.00 0.00 37.94 3.67
374 375 1.952133 CTTTTCGTCCGCCGTGTGA 60.952 57.895 0.00 0.00 37.94 3.58
376 377 3.343421 GCTTTTCGTCCGCCGTGT 61.343 61.111 0.00 0.00 37.94 4.49
377 378 4.424430 CGCTTTTCGTCCGCCGTG 62.424 66.667 0.00 0.00 37.94 4.94
380 381 3.785499 GTCCGCTTTTCGTCCGCC 61.785 66.667 0.00 0.00 36.19 6.13
383 384 2.851104 CACGTCCGCTTTTCGTCC 59.149 61.111 0.00 0.00 35.62 4.79
384 385 2.170273 GCACGTCCGCTTTTCGTC 59.830 61.111 0.00 0.00 35.62 4.20
385 386 3.698463 CGCACGTCCGCTTTTCGT 61.698 61.111 0.00 0.00 38.34 3.85
386 387 3.609422 GACGCACGTCCGCTTTTCG 62.609 63.158 12.04 0.00 39.08 3.46
387 388 2.170273 GACGCACGTCCGCTTTTC 59.830 61.111 12.04 0.00 39.08 2.29
397 398 3.708734 GACCCAAACGGACGCACG 61.709 66.667 0.00 0.00 40.31 5.34
398 399 3.708734 CGACCCAAACGGACGCAC 61.709 66.667 0.00 0.00 42.69 5.34
415 416 2.358193 AAAACAAAAGTCGGCCCGCC 62.358 55.000 0.00 0.00 0.00 6.13
416 417 1.066752 AAAACAAAAGTCGGCCCGC 59.933 52.632 0.00 0.00 0.00 6.13
417 418 0.101579 ACAAAACAAAAGTCGGCCCG 59.898 50.000 0.00 0.00 0.00 6.13
419 420 3.680458 TCAAAACAAAACAAAAGTCGGCC 59.320 39.130 0.00 0.00 0.00 6.13
420 421 4.434989 GGTCAAAACAAAACAAAAGTCGGC 60.435 41.667 0.00 0.00 0.00 5.54
421 422 4.092237 GGGTCAAAACAAAACAAAAGTCGG 59.908 41.667 0.00 0.00 0.00 4.79
422 423 4.686554 TGGGTCAAAACAAAACAAAAGTCG 59.313 37.500 0.00 0.00 0.00 4.18
423 424 6.546972 TTGGGTCAAAACAAAACAAAAGTC 57.453 33.333 0.00 0.00 0.00 3.01
425 426 5.848559 CGTTTGGGTCAAAACAAAACAAAAG 59.151 36.000 2.40 0.00 39.53 2.27
427 428 4.213482 CCGTTTGGGTCAAAACAAAACAAA 59.787 37.500 2.40 0.00 39.53 2.83
428 429 3.746492 CCGTTTGGGTCAAAACAAAACAA 59.254 39.130 2.40 0.00 39.53 2.83
429 430 3.006537 TCCGTTTGGGTCAAAACAAAACA 59.993 39.130 2.40 0.00 39.53 2.83
431 432 3.586892 GTCCGTTTGGGTCAAAACAAAA 58.413 40.909 2.40 0.00 39.53 2.44
432 433 2.415625 CGTCCGTTTGGGTCAAAACAAA 60.416 45.455 2.40 0.00 39.53 2.83
433 434 1.132643 CGTCCGTTTGGGTCAAAACAA 59.867 47.619 2.40 0.00 39.53 2.83
435 436 0.593008 GCGTCCGTTTGGGTCAAAAC 60.593 55.000 0.00 0.00 35.03 2.43
436 437 1.728672 GCGTCCGTTTGGGTCAAAA 59.271 52.632 0.00 0.00 35.03 2.44
437 438 2.535788 CGCGTCCGTTTGGGTCAAA 61.536 57.895 0.00 0.00 37.00 2.69
451 452 3.773630 CGTTTCATCCGTGCGCGT 61.774 61.111 19.61 0.00 36.15 6.01
453 454 4.160635 CCCGTTTCATCCGTGCGC 62.161 66.667 0.00 0.00 0.00 6.09
454 455 2.736682 GACCCGTTTCATCCGTGCG 61.737 63.158 0.00 0.00 0.00 5.34
455 456 1.635663 CTGACCCGTTTCATCCGTGC 61.636 60.000 0.00 0.00 0.00 5.34
456 457 1.635663 GCTGACCCGTTTCATCCGTG 61.636 60.000 0.00 0.00 0.00 4.94
457 458 1.375523 GCTGACCCGTTTCATCCGT 60.376 57.895 0.00 0.00 0.00 4.69
458 459 2.452813 CGCTGACCCGTTTCATCCG 61.453 63.158 0.00 0.00 0.00 4.18
459 460 2.750888 GCGCTGACCCGTTTCATCC 61.751 63.158 0.00 0.00 0.00 3.51
460 461 1.369091 ATGCGCTGACCCGTTTCATC 61.369 55.000 9.73 0.00 0.00 2.92
461 462 0.960364 AATGCGCTGACCCGTTTCAT 60.960 50.000 9.73 0.00 0.00 2.57
463 464 1.154225 CAATGCGCTGACCCGTTTC 60.154 57.895 9.73 0.00 0.00 2.78
464 465 2.625823 CCAATGCGCTGACCCGTTT 61.626 57.895 9.73 0.00 0.00 3.60
466 467 3.958147 CTCCAATGCGCTGACCCGT 62.958 63.158 9.73 0.00 0.00 5.28
467 468 2.572095 TACTCCAATGCGCTGACCCG 62.572 60.000 9.73 0.00 0.00 5.28
468 469 0.811616 CTACTCCAATGCGCTGACCC 60.812 60.000 9.73 0.00 0.00 4.46
469 470 1.432270 GCTACTCCAATGCGCTGACC 61.432 60.000 9.73 0.00 0.00 4.02
472 473 0.179089 AGAGCTACTCCAATGCGCTG 60.179 55.000 9.73 0.00 35.67 5.18
475 476 2.159099 TGGTAAGAGCTACTCCAATGCG 60.159 50.000 0.00 0.00 0.00 4.73
476 477 3.118592 AGTGGTAAGAGCTACTCCAATGC 60.119 47.826 0.00 0.00 0.00 3.56
477 478 4.744795 AGTGGTAAGAGCTACTCCAATG 57.255 45.455 0.00 0.00 0.00 2.82
478 479 6.611642 TGATAAGTGGTAAGAGCTACTCCAAT 59.388 38.462 0.00 0.00 0.00 3.16
481 482 5.221283 GGTGATAAGTGGTAAGAGCTACTCC 60.221 48.000 0.00 0.00 0.00 3.85
482 483 5.360144 TGGTGATAAGTGGTAAGAGCTACTC 59.640 44.000 0.00 0.00 0.00 2.59
483 484 5.269991 TGGTGATAAGTGGTAAGAGCTACT 58.730 41.667 0.00 0.00 0.00 2.57
484 485 5.593679 TGGTGATAAGTGGTAAGAGCTAC 57.406 43.478 0.00 0.00 0.00 3.58
485 486 6.837048 TGTATGGTGATAAGTGGTAAGAGCTA 59.163 38.462 0.00 0.00 0.00 3.32
487 488 5.914033 TGTATGGTGATAAGTGGTAAGAGC 58.086 41.667 0.00 0.00 0.00 4.09
488 489 8.041323 AGTTTGTATGGTGATAAGTGGTAAGAG 58.959 37.037 0.00 0.00 0.00 2.85
490 491 9.095065 GTAGTTTGTATGGTGATAAGTGGTAAG 57.905 37.037 0.00 0.00 0.00 2.34
491 492 8.595421 TGTAGTTTGTATGGTGATAAGTGGTAA 58.405 33.333 0.00 0.00 0.00 2.85
493 494 7.011499 TGTAGTTTGTATGGTGATAAGTGGT 57.989 36.000 0.00 0.00 0.00 4.16
498 499 9.961264 TGGTTTATGTAGTTTGTATGGTGATAA 57.039 29.630 0.00 0.00 0.00 1.75
499 500 9.386010 GTGGTTTATGTAGTTTGTATGGTGATA 57.614 33.333 0.00 0.00 0.00 2.15
500 501 7.885922 TGTGGTTTATGTAGTTTGTATGGTGAT 59.114 33.333 0.00 0.00 0.00 3.06
501 502 7.225011 TGTGGTTTATGTAGTTTGTATGGTGA 58.775 34.615 0.00 0.00 0.00 4.02
502 503 7.174253 ACTGTGGTTTATGTAGTTTGTATGGTG 59.826 37.037 0.00 0.00 0.00 4.17
503 504 7.228590 ACTGTGGTTTATGTAGTTTGTATGGT 58.771 34.615 0.00 0.00 0.00 3.55
504 505 7.681939 ACTGTGGTTTATGTAGTTTGTATGG 57.318 36.000 0.00 0.00 0.00 2.74
511 512 9.471084 GCATTTTAAACTGTGGTTTATGTAGTT 57.529 29.630 7.31 0.00 44.28 2.24
512 513 8.634444 TGCATTTTAAACTGTGGTTTATGTAGT 58.366 29.630 7.31 0.00 44.28 2.73
513 514 9.469807 TTGCATTTTAAACTGTGGTTTATGTAG 57.530 29.630 7.31 0.00 44.28 2.74
514 515 9.469807 CTTGCATTTTAAACTGTGGTTTATGTA 57.530 29.630 7.31 0.00 44.28 2.29
515 516 8.200792 TCTTGCATTTTAAACTGTGGTTTATGT 58.799 29.630 7.31 0.00 44.28 2.29
516 517 8.487176 GTCTTGCATTTTAAACTGTGGTTTATG 58.513 33.333 7.31 0.00 44.28 1.90
517 518 8.421002 AGTCTTGCATTTTAAACTGTGGTTTAT 58.579 29.630 7.31 0.00 44.28 1.40
518 519 7.777095 AGTCTTGCATTTTAAACTGTGGTTTA 58.223 30.769 7.31 0.00 43.00 2.01
519 520 6.639563 AGTCTTGCATTTTAAACTGTGGTTT 58.360 32.000 7.31 0.00 46.06 3.27
520 521 6.220726 AGTCTTGCATTTTAAACTGTGGTT 57.779 33.333 7.31 0.00 37.24 3.67
521 522 5.852282 AGTCTTGCATTTTAAACTGTGGT 57.148 34.783 7.31 0.00 0.00 4.16
522 523 7.648142 TCTAAGTCTTGCATTTTAAACTGTGG 58.352 34.615 7.31 0.00 0.00 4.17
523 524 7.324616 GCTCTAAGTCTTGCATTTTAAACTGTG 59.675 37.037 7.31 0.00 0.00 3.66
524 525 7.013274 TGCTCTAAGTCTTGCATTTTAAACTGT 59.987 33.333 7.31 0.00 0.00 3.55
525 526 7.362662 TGCTCTAAGTCTTGCATTTTAAACTG 58.637 34.615 1.35 1.35 0.00 3.16
526 527 7.510549 TGCTCTAAGTCTTGCATTTTAAACT 57.489 32.000 0.00 0.00 0.00 2.66
528 529 7.940850 AGTTGCTCTAAGTCTTGCATTTTAAA 58.059 30.769 0.00 0.00 35.27 1.52
530 531 6.149474 GGAGTTGCTCTAAGTCTTGCATTTTA 59.851 38.462 0.00 0.00 38.53 1.52
531 532 5.048434 GGAGTTGCTCTAAGTCTTGCATTTT 60.048 40.000 0.00 0.00 38.53 1.82
532 533 4.457257 GGAGTTGCTCTAAGTCTTGCATTT 59.543 41.667 0.00 0.00 38.53 2.32
534 535 3.008375 TGGAGTTGCTCTAAGTCTTGCAT 59.992 43.478 0.00 0.00 38.53 3.96
535 536 2.368548 TGGAGTTGCTCTAAGTCTTGCA 59.631 45.455 0.00 0.00 38.53 4.08
537 538 5.293079 GCTATTGGAGTTGCTCTAAGTCTTG 59.707 44.000 0.00 0.00 38.53 3.02
540 541 3.799420 CGCTATTGGAGTTGCTCTAAGTC 59.201 47.826 1.82 0.00 34.66 3.01
541 542 3.195825 ACGCTATTGGAGTTGCTCTAAGT 59.804 43.478 1.82 0.00 34.66 2.24
543 544 3.056107 ACACGCTATTGGAGTTGCTCTAA 60.056 43.478 0.00 0.00 35.57 2.10
544 545 2.496070 ACACGCTATTGGAGTTGCTCTA 59.504 45.455 0.00 0.00 0.00 2.43
545 546 1.276421 ACACGCTATTGGAGTTGCTCT 59.724 47.619 0.00 0.00 0.00 4.09
547 548 1.276421 AGACACGCTATTGGAGTTGCT 59.724 47.619 0.00 0.00 0.00 3.91
548 549 1.726853 AGACACGCTATTGGAGTTGC 58.273 50.000 0.00 0.00 0.00 4.17
575 576 3.941573 TCCCGTAAACGATAGCCTTTTT 58.058 40.909 3.65 0.00 43.02 1.94
576 577 3.615224 TCCCGTAAACGATAGCCTTTT 57.385 42.857 3.65 0.00 43.02 2.27
577 578 3.615224 TTCCCGTAAACGATAGCCTTT 57.385 42.857 3.65 0.00 43.02 3.11
579 580 3.832615 AATTCCCGTAAACGATAGCCT 57.167 42.857 3.65 0.00 43.02 4.58
580 581 4.874970 TCTAATTCCCGTAAACGATAGCC 58.125 43.478 3.65 0.00 43.02 3.93
582 583 5.010415 ACCCTCTAATTCCCGTAAACGATAG 59.990 44.000 3.65 0.00 43.02 2.08
583 584 4.895297 ACCCTCTAATTCCCGTAAACGATA 59.105 41.667 3.65 0.00 43.02 2.92
584 585 3.708121 ACCCTCTAATTCCCGTAAACGAT 59.292 43.478 3.65 0.00 43.02 3.73
585 586 3.099141 ACCCTCTAATTCCCGTAAACGA 58.901 45.455 3.65 0.00 43.02 3.85
586 587 3.531934 ACCCTCTAATTCCCGTAAACG 57.468 47.619 0.00 0.00 39.44 3.60
611 612 0.395036 CGACAATATTGGCCCACCCA 60.395 55.000 19.37 0.00 43.51 4.51
612 613 1.106944 CCGACAATATTGGCCCACCC 61.107 60.000 19.37 0.00 30.46 4.61
613 614 0.106918 TCCGACAATATTGGCCCACC 60.107 55.000 19.37 1.35 30.46 4.61
615 616 0.462937 CGTCCGACAATATTGGCCCA 60.463 55.000 19.37 1.59 30.46 5.36
617 618 0.935196 GACGTCCGACAATATTGGCC 59.065 55.000 19.37 9.70 30.46 5.36
618 619 0.935196 GGACGTCCGACAATATTGGC 59.065 55.000 20.85 15.77 0.00 4.52
620 621 3.682858 AGTTTGGACGTCCGACAATATTG 59.317 43.478 30.70 14.01 39.43 1.90
621 622 3.930848 GAGTTTGGACGTCCGACAATATT 59.069 43.478 30.70 17.08 39.43 1.28
622 623 3.518590 GAGTTTGGACGTCCGACAATAT 58.481 45.455 30.70 17.36 39.43 1.28
623 624 2.669113 CGAGTTTGGACGTCCGACAATA 60.669 50.000 30.70 14.85 39.43 1.90
624 625 1.792006 GAGTTTGGACGTCCGACAAT 58.208 50.000 30.70 19.64 39.43 2.71
625 626 0.595567 CGAGTTTGGACGTCCGACAA 60.596 55.000 30.70 21.23 39.43 3.18
626 627 1.008194 CGAGTTTGGACGTCCGACA 60.008 57.895 30.70 18.46 39.43 4.35
646 3825 1.191535 CCAACATAGACCCCGTCTGA 58.808 55.000 4.55 0.00 43.30 3.27
658 3838 5.155161 AGTACTATGGGCATCTCCAACATA 58.845 41.667 0.00 0.00 40.62 2.29
728 3915 1.525197 CGTTCTTCTTACGCTGTGCAA 59.475 47.619 0.00 0.00 31.73 4.08
731 3918 6.621737 TTTATACGTTCTTCTTACGCTGTG 57.378 37.500 0.00 0.00 42.49 3.66
778 3977 0.179234 TACGATACGTCCCCACCGTA 59.821 55.000 0.00 0.00 44.02 4.02
779 3978 1.077787 TACGATACGTCCCCACCGT 60.078 57.895 0.00 0.00 41.54 4.83
780 3979 1.650912 CTACGATACGTCCCCACCG 59.349 63.158 0.00 0.00 41.54 4.94
781 3980 2.036236 CCTACGATACGTCCCCACC 58.964 63.158 0.00 0.00 41.54 4.61
782 3981 1.361632 GCCTACGATACGTCCCCAC 59.638 63.158 0.00 0.00 41.54 4.61
783 3982 1.076850 TGCCTACGATACGTCCCCA 60.077 57.895 0.00 0.00 41.54 4.96
784 3983 1.658673 CTGCCTACGATACGTCCCC 59.341 63.158 0.00 0.00 41.54 4.81
801 4000 0.948141 GACTCGAAGCAACAGCAGCT 60.948 55.000 0.00 0.00 45.97 4.24
807 4018 0.039437 GACTCGGACTCGAAGCAACA 60.039 55.000 0.00 0.00 45.47 3.33
808 4019 0.733223 GGACTCGGACTCGAAGCAAC 60.733 60.000 0.00 0.00 45.47 4.17
809 4020 1.585006 GGACTCGGACTCGAAGCAA 59.415 57.895 0.00 0.00 45.47 3.91
810 4021 2.687805 CGGACTCGGACTCGAAGCA 61.688 63.158 0.00 0.00 45.47 3.91
811 4022 1.919956 TTCGGACTCGGACTCGAAGC 61.920 60.000 0.00 0.00 45.47 3.86
812 4023 0.733729 ATTCGGACTCGGACTCGAAG 59.266 55.000 0.00 0.00 45.47 3.79
813 4024 0.731417 GATTCGGACTCGGACTCGAA 59.269 55.000 0.00 0.00 45.47 3.71
814 4025 1.094073 GGATTCGGACTCGGACTCGA 61.094 60.000 0.00 0.00 43.86 4.04
815 4026 1.355916 GGATTCGGACTCGGACTCG 59.644 63.158 0.00 0.00 36.95 4.18
816 4027 1.094073 TCGGATTCGGACTCGGACTC 61.094 60.000 0.00 0.00 36.95 3.36
817 4028 0.679002 TTCGGATTCGGACTCGGACT 60.679 55.000 5.33 0.00 36.95 3.85
818 4029 0.384669 ATTCGGATTCGGACTCGGAC 59.615 55.000 5.33 0.00 36.95 4.79
875 4088 0.461516 GGGGACTTCGATTCCGGTTC 60.462 60.000 0.00 0.00 33.43 3.62
894 4107 5.316327 TCGATGCCTCTGCTTATATACAG 57.684 43.478 0.00 0.00 38.71 2.74
912 4128 1.246649 TTGTGCCTTTGTGCATCGAT 58.753 45.000 0.00 0.00 44.30 3.59
957 4173 2.571653 AGTTGCACATACCAGCTTCCTA 59.428 45.455 0.00 0.00 0.00 2.94
1083 4303 0.178987 GCTGATCGGTCCTCCTAGGA 60.179 60.000 11.98 11.98 43.43 2.94
1092 4312 1.590259 GAAGAGGCGCTGATCGGTC 60.590 63.158 7.64 3.43 38.94 4.79
1098 4318 1.219124 GGTGATGAAGAGGCGCTGA 59.781 57.895 7.64 0.00 0.00 4.26
1111 4337 2.391469 CGAGGTAGACGTCGGTGAT 58.609 57.895 10.46 0.00 46.60 3.06
1132 4358 2.525629 TGCTGTTCTCCCCGGACA 60.526 61.111 0.73 0.00 0.00 4.02
1218 4453 1.079127 CACGCAAGGGTTCTCCGAT 60.079 57.895 0.00 0.00 46.39 4.18
1269 4504 5.851177 CAGACGTACCATGTAAAAGCAAAAG 59.149 40.000 0.00 0.00 0.00 2.27
1410 4651 1.553248 CCCTCCTTGTGGTCGTCATTA 59.447 52.381 0.00 0.00 34.23 1.90
1491 4732 0.321564 CCTGTCGAACATCCTTGCCA 60.322 55.000 0.00 0.00 0.00 4.92
1500 4741 5.416639 TCTTATAGCTACAACCTGTCGAACA 59.583 40.000 0.00 0.00 0.00 3.18
1854 5112 0.332972 AGAATGCCTCCCCAAGTTCC 59.667 55.000 0.00 0.00 0.00 3.62
1859 5117 6.070656 CAGATAAATTAGAATGCCTCCCCAA 58.929 40.000 0.00 0.00 0.00 4.12
1863 5121 7.152645 TCGTACAGATAAATTAGAATGCCTCC 58.847 38.462 0.00 0.00 0.00 4.30
1933 5191 7.457024 AATTAAACCGGCACTAATGTACTTT 57.543 32.000 0.00 0.00 0.00 2.66
1937 5195 7.450124 TCAAAATTAAACCGGCACTAATGTA 57.550 32.000 0.00 0.00 0.00 2.29
2036 5294 0.179051 ACGAACCGGTGCAAAAGGTA 60.179 50.000 14.51 0.00 37.26 3.08
2077 5335 1.003118 GACAACATCCTGCCACCACTA 59.997 52.381 0.00 0.00 0.00 2.74
2129 5387 0.108041 ACCGGTTCGTGACACAAACT 60.108 50.000 0.00 0.00 0.00 2.66
2165 5423 1.481772 CGGGTGGACGAAGGGTTTATA 59.518 52.381 0.00 0.00 35.47 0.98
2210 5468 2.291930 GGGAAGAACAGAGAGGAGAGGA 60.292 54.545 0.00 0.00 0.00 3.71
2481 5740 7.010275 GGAGATTTAGAAGGCACTAAGTAAACG 59.990 40.741 4.84 0.00 38.49 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.