Multiple sequence alignment - TraesCS7D01G432700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G432700 chr7D 100.000 2937 0 0 1 2937 552287174 552284238 0.000000e+00 5424.0
1 TraesCS7D01G432700 chr7D 94.958 119 6 0 615 733 2047237 2047355 1.390000e-43 187.0
2 TraesCS7D01G432700 chr7D 92.063 126 10 0 615 740 506888997 506888872 8.360000e-41 178.0
3 TraesCS7D01G432700 chr7B 88.711 1878 104 54 730 2547 597312064 597310235 0.000000e+00 2194.0
4 TraesCS7D01G432700 chr7B 85.382 301 22 11 2230 2525 597252118 597251835 2.860000e-75 292.0
5 TraesCS7D01G432700 chr7B 82.595 316 40 9 2633 2937 597245899 597245588 6.240000e-67 265.0
6 TraesCS7D01G432700 chr7A 86.799 1462 57 47 732 2139 637949747 637948368 0.000000e+00 1506.0
7 TraesCS7D01G432700 chr7A 87.793 598 29 21 1 573 82105 81527 0.000000e+00 660.0
8 TraesCS7D01G432700 chr7A 86.760 574 68 6 1 571 574835518 574834950 1.490000e-177 632.0
9 TraesCS7D01G432700 chr7A 87.982 441 46 5 128 565 120676155 120676591 5.610000e-142 514.0
10 TraesCS7D01G432700 chr7A 91.633 251 15 1 2303 2547 637918431 637918181 2.800000e-90 342.0
11 TraesCS7D01G432700 chr7A 87.285 291 15 6 2245 2525 637948146 637947868 2.200000e-81 313.0
12 TraesCS7D01G432700 chr5A 88.153 574 61 5 1 571 444570412 444569843 0.000000e+00 676.0
13 TraesCS7D01G432700 chr6D 87.609 573 64 4 1 571 238694662 238694095 0.000000e+00 658.0
14 TraesCS7D01G432700 chr6D 95.726 117 5 0 615 731 27685060 27684944 3.860000e-44 189.0
15 TraesCS7D01G432700 chr3D 87.285 582 65 5 2 580 520041689 520041114 0.000000e+00 656.0
16 TraesCS7D01G432700 chr3D 95.122 123 5 1 615 736 20143541 20143663 2.990000e-45 193.0
17 TraesCS7D01G432700 chr3D 95.122 123 5 1 615 736 501791690 501791568 2.990000e-45 193.0
18 TraesCS7D01G432700 chr5B 87.326 576 63 6 1 571 44184667 44184097 0.000000e+00 651.0
19 TraesCS7D01G432700 chr5B 94.309 123 6 1 615 736 532900097 532900219 1.390000e-43 187.0
20 TraesCS7D01G432700 chr5B 93.496 123 7 1 615 736 677810808 677810686 6.470000e-42 182.0
21 TraesCS7D01G432700 chr6B 87.219 579 61 6 1 576 535536941 535537509 0.000000e+00 647.0
22 TraesCS7D01G432700 chr4B 85.739 575 68 6 1 572 326369254 326368691 1.950000e-166 595.0
23 TraesCS7D01G432700 chr2D 85.874 538 57 13 1 524 524200449 524200981 3.310000e-154 555.0
24 TraesCS7D01G432700 chr2D 91.463 164 12 1 572 733 539155817 539155980 1.060000e-54 224.0
25 TraesCS7D01G432700 chr4D 95.625 160 4 2 572 730 12301289 12301446 1.350000e-63 254.0
26 TraesCS7D01G432700 chr4D 88.957 163 8 5 572 733 25384778 25384931 2.990000e-45 193.0
27 TraesCS7D01G432700 chr1D 90.230 174 12 4 566 736 372469364 372469193 3.810000e-54 222.0
28 TraesCS7D01G432700 chr1D 93.496 123 7 1 615 736 468133764 468133886 6.470000e-42 182.0
29 TraesCS7D01G432700 chr1D 97.436 39 1 0 572 610 359788676 359788714 1.890000e-07 67.6
30 TraesCS7D01G432700 chr5D 93.496 123 6 2 615 736 157690596 157690717 6.470000e-42 182.0
31 TraesCS7D01G432700 chr5D 97.436 39 1 0 572 610 157690496 157690534 1.890000e-07 67.6
32 TraesCS7D01G432700 chr3B 93.496 123 7 1 615 736 632917436 632917558 6.470000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G432700 chr7D 552284238 552287174 2936 True 5424.0 5424 100.000 1 2937 1 chr7D.!!$R2 2936
1 TraesCS7D01G432700 chr7B 597310235 597312064 1829 True 2194.0 2194 88.711 730 2547 1 chr7B.!!$R3 1817
2 TraesCS7D01G432700 chr7A 637947868 637949747 1879 True 909.5 1506 87.042 732 2525 2 chr7A.!!$R4 1793
3 TraesCS7D01G432700 chr7A 81527 82105 578 True 660.0 660 87.793 1 573 1 chr7A.!!$R1 572
4 TraesCS7D01G432700 chr7A 574834950 574835518 568 True 632.0 632 86.760 1 571 1 chr7A.!!$R2 570
5 TraesCS7D01G432700 chr5A 444569843 444570412 569 True 676.0 676 88.153 1 571 1 chr5A.!!$R1 570
6 TraesCS7D01G432700 chr6D 238694095 238694662 567 True 658.0 658 87.609 1 571 1 chr6D.!!$R2 570
7 TraesCS7D01G432700 chr3D 520041114 520041689 575 True 656.0 656 87.285 2 580 1 chr3D.!!$R2 578
8 TraesCS7D01G432700 chr5B 44184097 44184667 570 True 651.0 651 87.326 1 571 1 chr5B.!!$R1 570
9 TraesCS7D01G432700 chr6B 535536941 535537509 568 False 647.0 647 87.219 1 576 1 chr6B.!!$F1 575
10 TraesCS7D01G432700 chr4B 326368691 326369254 563 True 595.0 595 85.739 1 572 1 chr4B.!!$R1 571
11 TraesCS7D01G432700 chr2D 524200449 524200981 532 False 555.0 555 85.874 1 524 1 chr2D.!!$F1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
659 703 0.109504 TCGGGCGTGCTTTATTTTGC 60.11 50.0 0.0 0.0 0.0 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1955 2045 1.202604 GGTTGGTGAAGAAGACGACCA 60.203 52.381 0.0 0.0 36.68 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
242 278 1.291184 TGGTCTCGCAGCGATTTGTG 61.291 55.000 19.91 6.28 34.61 3.33
267 303 9.502091 TGTGTGCTAAAGATTCTTGTATAAAGT 57.498 29.630 0.00 0.00 0.00 2.66
337 379 8.517878 ACTACTAAAATTAGCAGTAACGAGTGA 58.482 33.333 4.59 0.00 36.00 3.41
565 609 1.633432 TGCTGCTAGGCTTTTCCCTAA 59.367 47.619 0.00 0.00 37.04 2.69
568 612 4.080015 TGCTGCTAGGCTTTTCCCTAATAA 60.080 41.667 0.00 0.00 37.04 1.40
573 617 6.716628 TGCTAGGCTTTTCCCTAATAATGATG 59.283 38.462 0.00 0.00 37.04 3.07
574 618 6.717084 GCTAGGCTTTTCCCTAATAATGATGT 59.283 38.462 0.00 0.00 37.04 3.06
585 629 9.837681 TCCCTAATAATGATGTATTGTAGGAGA 57.162 33.333 0.00 0.00 38.70 3.71
594 638 8.996651 TGATGTATTGTAGGAGAAGACTATGA 57.003 34.615 0.00 0.00 0.00 2.15
595 639 9.421399 TGATGTATTGTAGGAGAAGACTATGAA 57.579 33.333 0.00 0.00 0.00 2.57
596 640 9.685828 GATGTATTGTAGGAGAAGACTATGAAC 57.314 37.037 0.00 0.00 0.00 3.18
597 641 8.824756 TGTATTGTAGGAGAAGACTATGAACT 57.175 34.615 0.00 0.00 0.00 3.01
598 642 9.916360 TGTATTGTAGGAGAAGACTATGAACTA 57.084 33.333 0.00 0.00 0.00 2.24
601 645 8.824756 TTGTAGGAGAAGACTATGAACTATGT 57.175 34.615 0.00 0.00 0.00 2.29
602 646 9.916360 TTGTAGGAGAAGACTATGAACTATGTA 57.084 33.333 0.00 0.00 0.00 2.29
603 647 9.339850 TGTAGGAGAAGACTATGAACTATGTAC 57.660 37.037 0.00 0.00 0.00 2.90
604 648 7.499321 AGGAGAAGACTATGAACTATGTACG 57.501 40.000 0.00 0.00 0.00 3.67
605 649 6.016943 AGGAGAAGACTATGAACTATGTACGC 60.017 42.308 0.00 0.00 0.00 4.42
606 650 6.238676 GGAGAAGACTATGAACTATGTACGCA 60.239 42.308 0.00 0.00 0.00 5.24
607 651 7.278461 AGAAGACTATGAACTATGTACGCAT 57.722 36.000 0.00 0.00 39.03 4.73
608 652 7.717568 AGAAGACTATGAACTATGTACGCATT 58.282 34.615 0.00 0.00 36.58 3.56
609 653 8.198109 AGAAGACTATGAACTATGTACGCATTT 58.802 33.333 0.00 0.00 36.58 2.32
610 654 7.932120 AGACTATGAACTATGTACGCATTTC 57.068 36.000 0.00 0.00 36.58 2.17
611 655 7.717568 AGACTATGAACTATGTACGCATTTCT 58.282 34.615 0.00 0.00 36.58 2.52
612 656 8.847196 AGACTATGAACTATGTACGCATTTCTA 58.153 33.333 0.00 0.00 36.58 2.10
613 657 9.627395 GACTATGAACTATGTACGCATTTCTAT 57.373 33.333 0.00 0.00 36.58 1.98
624 668 7.891782 TGTACGCATTTCTATAAATATAGCGC 58.108 34.615 0.00 0.00 43.39 5.92
625 669 6.021055 ACGCATTTCTATAAATATAGCGCG 57.979 37.500 19.71 19.71 43.39 6.86
626 670 4.892880 CGCATTTCTATAAATATAGCGCGC 59.107 41.667 26.66 26.66 37.84 6.86
627 671 5.198274 GCATTTCTATAAATATAGCGCGCC 58.802 41.667 30.33 10.31 36.47 6.53
628 672 5.006746 GCATTTCTATAAATATAGCGCGCCT 59.993 40.000 30.33 18.68 36.47 5.52
629 673 6.414079 CATTTCTATAAATATAGCGCGCCTG 58.586 40.000 30.33 5.79 36.47 4.85
630 674 3.444916 TCTATAAATATAGCGCGCCTGC 58.555 45.455 30.33 0.00 36.47 4.85
631 675 7.126233 ATTTCTATAAATATAGCGCGCCTGCT 61.126 38.462 30.33 12.34 39.98 4.24
632 676 1.428448 TAAATATAGCGCGCCTGCTG 58.572 50.000 30.33 0.00 46.70 4.41
633 677 1.230635 AAATATAGCGCGCCTGCTGG 61.231 55.000 30.33 5.03 46.70 4.85
634 678 2.099652 AATATAGCGCGCCTGCTGGA 62.100 55.000 30.33 6.69 46.70 3.86
635 679 2.498291 ATATAGCGCGCCTGCTGGAG 62.498 60.000 30.33 11.77 46.70 3.86
654 698 2.513897 GGCTCGGGCGTGCTTTAT 60.514 61.111 0.00 0.00 39.81 1.40
655 699 2.112815 GGCTCGGGCGTGCTTTATT 61.113 57.895 0.00 0.00 39.81 1.40
656 700 1.654023 GGCTCGGGCGTGCTTTATTT 61.654 55.000 0.00 0.00 39.81 1.40
657 701 0.170339 GCTCGGGCGTGCTTTATTTT 59.830 50.000 0.00 0.00 0.00 1.82
658 702 1.895051 CTCGGGCGTGCTTTATTTTG 58.105 50.000 0.00 0.00 0.00 2.44
659 703 0.109504 TCGGGCGTGCTTTATTTTGC 60.110 50.000 0.00 0.00 0.00 3.68
660 704 1.402479 CGGGCGTGCTTTATTTTGCG 61.402 55.000 0.00 0.00 0.00 4.85
661 705 1.075979 GGGCGTGCTTTATTTTGCGG 61.076 55.000 0.00 0.00 0.00 5.69
662 706 1.682867 GGCGTGCTTTATTTTGCGGC 61.683 55.000 0.00 0.00 37.69 6.53
663 707 1.980181 CGTGCTTTATTTTGCGGCG 59.020 52.632 0.51 0.51 0.00 6.46
664 708 1.402479 CGTGCTTTATTTTGCGGCGG 61.402 55.000 9.78 0.00 0.00 6.13
665 709 1.445238 TGCTTTATTTTGCGGCGGC 60.445 52.632 9.78 9.68 40.52 6.53
666 710 2.164663 GCTTTATTTTGCGGCGGCC 61.165 57.895 14.25 9.54 38.85 6.13
701 745 4.999939 GCCGCGCACAAAACCTGG 63.000 66.667 8.75 0.00 0.00 4.45
702 746 4.999939 CCGCGCACAAAACCTGGC 63.000 66.667 8.75 0.00 0.00 4.85
703 747 3.964875 CGCGCACAAAACCTGGCT 61.965 61.111 8.75 0.00 0.00 4.75
704 748 2.050077 GCGCACAAAACCTGGCTC 60.050 61.111 0.30 0.00 0.00 4.70
705 749 2.844451 GCGCACAAAACCTGGCTCA 61.844 57.895 0.30 0.00 0.00 4.26
706 750 1.008538 CGCACAAAACCTGGCTCAC 60.009 57.895 0.00 0.00 0.00 3.51
707 751 1.363807 GCACAAAACCTGGCTCACC 59.636 57.895 0.00 0.00 0.00 4.02
708 752 2.041153 CACAAAACCTGGCTCACCC 58.959 57.895 0.00 0.00 33.59 4.61
709 753 1.528309 ACAAAACCTGGCTCACCCG 60.528 57.895 0.00 0.00 35.87 5.28
710 754 2.115266 AAAACCTGGCTCACCCGG 59.885 61.111 0.00 0.00 39.92 5.73
711 755 4.660938 AAACCTGGCTCACCCGGC 62.661 66.667 0.00 0.00 38.79 6.13
718 762 4.530857 GCTCACCCGGCGCTGTAT 62.531 66.667 16.49 0.00 0.00 2.29
719 763 2.186903 CTCACCCGGCGCTGTATT 59.813 61.111 16.49 0.00 0.00 1.89
720 764 1.883084 CTCACCCGGCGCTGTATTC 60.883 63.158 16.49 0.00 0.00 1.75
721 765 2.186903 CACCCGGCGCTGTATTCT 59.813 61.111 16.49 0.00 0.00 2.40
722 766 2.173669 CACCCGGCGCTGTATTCTG 61.174 63.158 16.49 0.00 0.00 3.02
723 767 2.355986 ACCCGGCGCTGTATTCTGA 61.356 57.895 16.49 0.00 0.00 3.27
724 768 1.883084 CCCGGCGCTGTATTCTGAC 60.883 63.158 16.49 0.00 0.00 3.51
725 769 1.141881 CCGGCGCTGTATTCTGACT 59.858 57.895 16.49 0.00 0.00 3.41
726 770 0.460284 CCGGCGCTGTATTCTGACTT 60.460 55.000 16.49 0.00 0.00 3.01
727 771 1.359848 CGGCGCTGTATTCTGACTTT 58.640 50.000 8.45 0.00 0.00 2.66
728 772 1.732259 CGGCGCTGTATTCTGACTTTT 59.268 47.619 8.45 0.00 0.00 2.27
735 779 3.267483 TGTATTCTGACTTTTAGCGGCC 58.733 45.455 0.00 0.00 0.00 6.13
759 803 3.377172 ACAAAATTAGGAGCGCATACACC 59.623 43.478 11.47 4.77 0.00 4.16
769 813 2.620459 CATACACCGCACGCGATG 59.380 61.111 15.93 8.97 42.83 3.84
798 842 2.430956 CGCAATTTGAGTGATACGTGC 58.569 47.619 0.00 0.00 0.00 5.34
810 854 1.000506 GATACGTGCCATCCCGTATGT 59.999 52.381 9.16 0.00 46.82 2.29
949 993 1.545651 CCAACTCCACCTCCAAGAACC 60.546 57.143 0.00 0.00 0.00 3.62
972 1016 4.704833 CGCCACTCCACCCCACAG 62.705 72.222 0.00 0.00 0.00 3.66
973 1017 4.351054 GCCACTCCACCCCACAGG 62.351 72.222 0.00 0.00 43.78 4.00
974 1018 2.529136 CCACTCCACCCCACAGGA 60.529 66.667 0.00 0.00 39.89 3.86
975 1019 1.925455 CCACTCCACCCCACAGGAT 60.925 63.158 0.00 0.00 39.89 3.24
1209 1259 1.348938 CTCGCTGTCGTCCTACTCG 59.651 63.158 0.00 0.00 36.96 4.18
1545 1616 3.068024 TGGCCAAGATCAACAACAAGTTC 59.932 43.478 0.61 0.00 38.74 3.01
1626 1697 3.657956 CCTCAGCAAGATCGAGGTC 57.342 57.895 5.65 0.00 41.26 3.85
1627 1698 0.820226 CCTCAGCAAGATCGAGGTCA 59.180 55.000 5.65 0.00 41.26 4.02
1634 1707 4.505922 CAGCAAGATCGAGGTCAGTAATTC 59.494 45.833 0.00 0.00 0.00 2.17
1644 1717 4.796606 AGGTCAGTAATTCATTCCCATGG 58.203 43.478 4.14 4.14 0.00 3.66
1658 1731 1.202698 CCCATGGTCGATTCCTTCTCC 60.203 57.143 11.73 0.00 0.00 3.71
1667 1756 2.625790 CGATTCCTTCTCCTTCGATCCT 59.374 50.000 0.00 0.00 31.74 3.24
1673 1762 2.151502 TCTCCTTCGATCCTTGCTCT 57.848 50.000 0.00 0.00 0.00 4.09
1699 1788 3.679980 TGCGAGCAAGTAAGATCAAGAAC 59.320 43.478 0.00 0.00 0.00 3.01
1700 1789 3.929610 GCGAGCAAGTAAGATCAAGAACT 59.070 43.478 0.00 0.00 0.00 3.01
1703 1792 6.454450 GCGAGCAAGTAAGATCAAGAACTAAC 60.454 42.308 0.00 0.00 0.00 2.34
1705 1794 7.968956 CGAGCAAGTAAGATCAAGAACTAACTA 59.031 37.037 0.00 0.00 0.00 2.24
1953 2043 5.336372 CCTCCTAAGAGCTACATCTACATGC 60.336 48.000 0.00 0.00 38.96 4.06
1954 2044 5.140454 TCCTAAGAGCTACATCTACATGCA 58.860 41.667 0.00 0.00 32.57 3.96
1955 2045 5.777223 TCCTAAGAGCTACATCTACATGCAT 59.223 40.000 0.00 0.00 32.57 3.96
1960 2052 2.733552 GCTACATCTACATGCATGGTCG 59.266 50.000 29.41 16.88 32.57 4.79
1977 2069 2.550208 GGTCGTCTTCTTCACCAACCAT 60.550 50.000 0.00 0.00 0.00 3.55
1994 2086 5.068198 CCAACCATCCATCAATTTCCTACTG 59.932 44.000 0.00 0.00 0.00 2.74
1995 2087 5.456921 ACCATCCATCAATTTCCTACTGT 57.543 39.130 0.00 0.00 0.00 3.55
1996 2088 6.575244 ACCATCCATCAATTTCCTACTGTA 57.425 37.500 0.00 0.00 0.00 2.74
2032 2124 7.853377 TCGACATCGATCTGTATTATTGAAC 57.147 36.000 0.00 0.00 44.22 3.18
2033 2125 6.861572 TCGACATCGATCTGTATTATTGAACC 59.138 38.462 0.00 0.00 44.22 3.62
2034 2126 6.640907 CGACATCGATCTGTATTATTGAACCA 59.359 38.462 0.00 0.00 43.02 3.67
2050 2160 6.827586 TTGAACCAAACTGTACAGAGTTTT 57.172 33.333 29.30 15.91 42.33 2.43
2070 2185 7.216494 AGTTTTAAACATTTGCTGGCTTGTAT 58.784 30.769 10.60 0.00 0.00 2.29
2071 2186 7.171337 AGTTTTAAACATTTGCTGGCTTGTATG 59.829 33.333 10.60 0.00 0.00 2.39
2109 2224 6.793492 ATTGAGAACAGTTTGAGACTTAGC 57.207 37.500 0.00 0.00 36.10 3.09
2110 2225 5.276461 TGAGAACAGTTTGAGACTTAGCA 57.724 39.130 0.00 0.00 36.10 3.49
2112 2227 6.291377 TGAGAACAGTTTGAGACTTAGCAAT 58.709 36.000 0.00 0.00 36.10 3.56
2113 2228 6.203530 TGAGAACAGTTTGAGACTTAGCAATG 59.796 38.462 0.00 0.00 36.10 2.82
2115 2230 7.217200 AGAACAGTTTGAGACTTAGCAATGTA 58.783 34.615 0.00 0.00 36.10 2.29
2117 2232 5.409826 ACAGTTTGAGACTTAGCAATGTAGC 59.590 40.000 0.00 0.00 36.10 3.58
2118 2233 5.409520 CAGTTTGAGACTTAGCAATGTAGCA 59.590 40.000 0.00 0.00 36.10 3.49
2119 2234 6.093219 CAGTTTGAGACTTAGCAATGTAGCAT 59.907 38.462 0.00 0.00 36.10 3.79
2120 2235 6.314896 AGTTTGAGACTTAGCAATGTAGCATC 59.685 38.462 0.00 0.00 33.92 3.91
2139 2254 2.923121 TCTTAATTAGCAGCTGGCCTG 58.077 47.619 17.12 4.26 46.50 4.85
2151 2280 1.683011 GCTGGCCTGCTTCCTATTTGA 60.683 52.381 25.99 0.00 0.00 2.69
2160 2289 5.065731 CCTGCTTCCTATTTGACATGACTTC 59.934 44.000 0.00 0.00 0.00 3.01
2162 2291 6.240894 TGCTTCCTATTTGACATGACTTCTT 58.759 36.000 0.00 0.00 0.00 2.52
2175 2304 8.469200 TGACATGACTTCTTTCTGAATGTTTTT 58.531 29.630 0.00 0.00 33.71 1.94
2210 2341 5.510520 CCTCATGAGGCCTAACTAATCTCAC 60.511 48.000 28.45 0.00 42.44 3.51
2220 2351 6.183360 GCCTAACTAATCTCACACCCATTCTA 60.183 42.308 0.00 0.00 0.00 2.10
2221 2352 7.635089 GCCTAACTAATCTCACACCCATTCTAA 60.635 40.741 0.00 0.00 0.00 2.10
2222 2353 8.265055 CCTAACTAATCTCACACCCATTCTAAA 58.735 37.037 0.00 0.00 0.00 1.85
2224 2355 7.259088 ACTAATCTCACACCCATTCTAAACT 57.741 36.000 0.00 0.00 0.00 2.66
2225 2356 8.375493 ACTAATCTCACACCCATTCTAAACTA 57.625 34.615 0.00 0.00 0.00 2.24
2227 2358 9.482627 CTAATCTCACACCCATTCTAAACTATC 57.517 37.037 0.00 0.00 0.00 2.08
2229 2360 7.437713 TCTCACACCCATTCTAAACTATCAT 57.562 36.000 0.00 0.00 0.00 2.45
2230 2361 7.861629 TCTCACACCCATTCTAAACTATCATT 58.138 34.615 0.00 0.00 0.00 2.57
2231 2362 7.987458 TCTCACACCCATTCTAAACTATCATTC 59.013 37.037 0.00 0.00 0.00 2.67
2232 2363 7.861629 TCACACCCATTCTAAACTATCATTCT 58.138 34.615 0.00 0.00 0.00 2.40
2234 2365 9.613428 CACACCCATTCTAAACTATCATTCTAA 57.387 33.333 0.00 0.00 0.00 2.10
2243 2374 9.042008 TCTAAACTATCATTCTAAATTGTCCGC 57.958 33.333 0.00 0.00 0.00 5.54
2244 2375 7.624360 AAACTATCATTCTAAATTGTCCGCA 57.376 32.000 0.00 0.00 0.00 5.69
2245 2376 7.624360 AACTATCATTCTAAATTGTCCGCAA 57.376 32.000 0.00 0.00 39.16 4.85
2246 2377 7.624360 ACTATCATTCTAAATTGTCCGCAAA 57.376 32.000 0.00 0.00 38.21 3.68
2248 2379 8.686334 ACTATCATTCTAAATTGTCCGCAAATT 58.314 29.630 0.00 0.00 38.21 1.82
2249 2380 7.992180 ATCATTCTAAATTGTCCGCAAATTC 57.008 32.000 0.00 0.00 38.21 2.17
2277 2509 3.771577 AATATTCGATCGAGGCCCTTT 57.228 42.857 18.54 5.14 0.00 3.11
2278 2510 2.526304 TATTCGATCGAGGCCCTTTG 57.474 50.000 18.54 0.00 0.00 2.77
2279 2511 0.815615 ATTCGATCGAGGCCCTTTGC 60.816 55.000 18.54 0.00 40.16 3.68
2285 2526 2.281484 GAGGCCCTTTGCGTGTGA 60.281 61.111 0.00 0.00 42.61 3.58
2292 2533 0.583438 CCTTTGCGTGTGACTGACTG 59.417 55.000 0.00 0.00 0.00 3.51
2456 2698 0.603569 CTAAGGCGTGACAGTGACCT 59.396 55.000 0.00 0.00 0.00 3.85
2461 2703 1.300931 CGTGACAGTGACCTGGTGG 60.301 63.158 2.82 0.00 43.36 4.61
2480 2722 1.947456 GGTAATGACCATTCCCGAAGC 59.053 52.381 0.00 0.00 46.12 3.86
2481 2723 2.639065 GTAATGACCATTCCCGAAGCA 58.361 47.619 0.00 0.00 32.50 3.91
2482 2724 1.755179 AATGACCATTCCCGAAGCAG 58.245 50.000 0.00 0.00 0.00 4.24
2547 2789 3.754965 GTGCTATGGATATTCAAGCCCA 58.245 45.455 12.73 0.00 32.14 5.36
2548 2790 4.144297 GTGCTATGGATATTCAAGCCCAA 58.856 43.478 12.73 0.00 32.14 4.12
2549 2791 4.584325 GTGCTATGGATATTCAAGCCCAAA 59.416 41.667 12.73 0.00 32.14 3.28
2550 2792 5.068987 GTGCTATGGATATTCAAGCCCAAAA 59.931 40.000 12.73 0.00 32.14 2.44
2551 2793 5.840149 TGCTATGGATATTCAAGCCCAAAAT 59.160 36.000 12.73 0.00 32.14 1.82
2552 2794 7.009550 TGCTATGGATATTCAAGCCCAAAATA 58.990 34.615 12.73 0.00 32.14 1.40
2553 2795 7.039784 TGCTATGGATATTCAAGCCCAAAATAC 60.040 37.037 12.73 0.00 32.14 1.89
2554 2796 5.766150 TGGATATTCAAGCCCAAAATACG 57.234 39.130 0.00 0.00 0.00 3.06
2555 2797 5.441500 TGGATATTCAAGCCCAAAATACGA 58.558 37.500 0.00 0.00 0.00 3.43
2556 2798 5.888724 TGGATATTCAAGCCCAAAATACGAA 59.111 36.000 0.00 0.00 0.00 3.85
2557 2799 6.378564 TGGATATTCAAGCCCAAAATACGAAA 59.621 34.615 0.00 0.00 0.00 3.46
2558 2800 7.093727 TGGATATTCAAGCCCAAAATACGAAAA 60.094 33.333 0.00 0.00 0.00 2.29
2559 2801 7.926018 GGATATTCAAGCCCAAAATACGAAAAT 59.074 33.333 0.00 0.00 0.00 1.82
2560 2802 9.959749 GATATTCAAGCCCAAAATACGAAAATA 57.040 29.630 0.00 0.00 0.00 1.40
2563 2805 8.888579 TTCAAGCCCAAAATACGAAAATAAAA 57.111 26.923 0.00 0.00 0.00 1.52
2564 2806 8.888579 TCAAGCCCAAAATACGAAAATAAAAA 57.111 26.923 0.00 0.00 0.00 1.94
2565 2807 8.766151 TCAAGCCCAAAATACGAAAATAAAAAC 58.234 29.630 0.00 0.00 0.00 2.43
2566 2808 8.769891 CAAGCCCAAAATACGAAAATAAAAACT 58.230 29.630 0.00 0.00 0.00 2.66
2567 2809 9.984190 AAGCCCAAAATACGAAAATAAAAACTA 57.016 25.926 0.00 0.00 0.00 2.24
2568 2810 9.634163 AGCCCAAAATACGAAAATAAAAACTAG 57.366 29.630 0.00 0.00 0.00 2.57
2569 2811 9.628746 GCCCAAAATACGAAAATAAAAACTAGA 57.371 29.630 0.00 0.00 0.00 2.43
2614 2856 2.763249 CTGAATTACAGCCATTCCGC 57.237 50.000 0.00 0.00 39.86 5.54
2615 2857 2.292267 CTGAATTACAGCCATTCCGCT 58.708 47.619 0.00 0.00 39.86 5.52
2616 2858 3.466836 CTGAATTACAGCCATTCCGCTA 58.533 45.455 0.00 0.00 39.86 4.26
2617 2859 3.876914 CTGAATTACAGCCATTCCGCTAA 59.123 43.478 0.00 0.00 39.86 3.09
2618 2860 4.265893 TGAATTACAGCCATTCCGCTAAA 58.734 39.130 0.00 0.00 36.82 1.85
2619 2861 4.335315 TGAATTACAGCCATTCCGCTAAAG 59.665 41.667 0.00 0.00 36.82 1.85
2620 2862 3.343941 TTACAGCCATTCCGCTAAAGT 57.656 42.857 0.00 0.00 36.82 2.66
2621 2863 1.739067 ACAGCCATTCCGCTAAAGTC 58.261 50.000 0.00 0.00 36.82 3.01
2622 2864 1.279271 ACAGCCATTCCGCTAAAGTCT 59.721 47.619 0.00 0.00 36.82 3.24
2623 2865 2.500098 ACAGCCATTCCGCTAAAGTCTA 59.500 45.455 0.00 0.00 36.82 2.59
2624 2866 3.134804 ACAGCCATTCCGCTAAAGTCTAT 59.865 43.478 0.00 0.00 36.82 1.98
2625 2867 4.344102 ACAGCCATTCCGCTAAAGTCTATA 59.656 41.667 0.00 0.00 36.82 1.31
2626 2868 5.012148 ACAGCCATTCCGCTAAAGTCTATAT 59.988 40.000 0.00 0.00 36.82 0.86
2627 2869 5.934625 CAGCCATTCCGCTAAAGTCTATATT 59.065 40.000 0.00 0.00 36.82 1.28
2628 2870 5.934625 AGCCATTCCGCTAAAGTCTATATTG 59.065 40.000 0.00 0.00 37.32 1.90
2629 2871 5.932303 GCCATTCCGCTAAAGTCTATATTGA 59.068 40.000 0.00 0.00 0.00 2.57
2630 2872 6.426937 GCCATTCCGCTAAAGTCTATATTGAA 59.573 38.462 0.00 0.00 0.00 2.69
2631 2873 7.360438 GCCATTCCGCTAAAGTCTATATTGAAG 60.360 40.741 0.00 0.00 0.00 3.02
2632 2874 7.360438 CCATTCCGCTAAAGTCTATATTGAAGC 60.360 40.741 0.21 0.21 0.00 3.86
2633 2875 5.539048 TCCGCTAAAGTCTATATTGAAGCC 58.461 41.667 3.89 0.00 0.00 4.35
2634 2876 5.304614 TCCGCTAAAGTCTATATTGAAGCCT 59.695 40.000 3.89 0.00 0.00 4.58
2635 2877 5.635700 CCGCTAAAGTCTATATTGAAGCCTC 59.364 44.000 3.89 0.00 0.00 4.70
2636 2878 6.216569 CGCTAAAGTCTATATTGAAGCCTCA 58.783 40.000 3.89 0.00 0.00 3.86
2637 2879 6.701841 CGCTAAAGTCTATATTGAAGCCTCAA 59.298 38.462 0.00 0.00 45.53 3.02
2670 2912 9.598517 AAACATTTCAGATTTAAAAAGTGCTCA 57.401 25.926 0.00 0.00 0.00 4.26
2671 2913 8.579682 ACATTTCAGATTTAAAAAGTGCTCAC 57.420 30.769 0.00 0.00 0.00 3.51
2672 2914 8.196771 ACATTTCAGATTTAAAAAGTGCTCACA 58.803 29.630 2.63 0.00 0.00 3.58
2673 2915 9.199982 CATTTCAGATTTAAAAAGTGCTCACAT 57.800 29.630 2.63 0.00 0.00 3.21
2773 3015 9.906660 CATGTTTTTCCTGTAGTAAATAAAGCA 57.093 29.630 0.00 0.00 0.00 3.91
2826 3068 4.491234 AAAAAGTGTTCACGTGTGTTCA 57.509 36.364 16.51 7.89 0.00 3.18
2827 3069 3.465122 AAAGTGTTCACGTGTGTTCAC 57.535 42.857 16.51 18.05 40.79 3.18
2828 3070 2.087501 AGTGTTCACGTGTGTTCACA 57.912 45.000 16.51 9.00 44.02 3.58
2829 3071 2.418692 AGTGTTCACGTGTGTTCACAA 58.581 42.857 16.51 0.00 44.02 3.33
2830 3072 2.809119 AGTGTTCACGTGTGTTCACAAA 59.191 40.909 16.51 0.00 44.02 2.83
2831 3073 3.120338 AGTGTTCACGTGTGTTCACAAAG 60.120 43.478 16.51 7.49 44.02 2.77
2832 3074 2.809119 TGTTCACGTGTGTTCACAAAGT 59.191 40.909 16.51 8.07 44.02 2.66
2833 3075 3.251245 TGTTCACGTGTGTTCACAAAGTT 59.749 39.130 16.51 0.00 44.02 2.66
2834 3076 4.223659 GTTCACGTGTGTTCACAAAGTTT 58.776 39.130 16.51 0.00 44.02 2.66
2835 3077 3.816091 TCACGTGTGTTCACAAAGTTTG 58.184 40.909 16.51 14.13 44.02 2.93
2836 3078 3.251245 TCACGTGTGTTCACAAAGTTTGT 59.749 39.130 15.58 15.58 46.75 2.83
2846 3088 3.393089 ACAAAGTTTGTGTGTTTGCCA 57.607 38.095 20.26 0.00 43.48 4.92
2847 3089 3.733337 ACAAAGTTTGTGTGTTTGCCAA 58.267 36.364 20.26 0.00 43.48 4.52
2848 3090 4.322567 ACAAAGTTTGTGTGTTTGCCAAT 58.677 34.783 20.26 0.00 43.48 3.16
2849 3091 4.759183 ACAAAGTTTGTGTGTTTGCCAATT 59.241 33.333 20.26 0.00 43.48 2.32
2850 3092 5.240403 ACAAAGTTTGTGTGTTTGCCAATTT 59.760 32.000 20.26 0.00 43.48 1.82
2851 3093 5.956068 AAGTTTGTGTGTTTGCCAATTTT 57.044 30.435 0.00 0.00 0.00 1.82
2852 3094 5.956068 AGTTTGTGTGTTTGCCAATTTTT 57.044 30.435 0.00 0.00 0.00 1.94
2898 3140 7.961326 ATAAATGGAAAATAAGTGTGAGCCT 57.039 32.000 0.00 0.00 0.00 4.58
2900 3142 7.396540 AAATGGAAAATAAGTGTGAGCCTAG 57.603 36.000 0.00 0.00 0.00 3.02
2901 3143 5.499004 TGGAAAATAAGTGTGAGCCTAGT 57.501 39.130 0.00 0.00 0.00 2.57
2902 3144 5.245531 TGGAAAATAAGTGTGAGCCTAGTG 58.754 41.667 0.00 0.00 0.00 2.74
2903 3145 5.221843 TGGAAAATAAGTGTGAGCCTAGTGT 60.222 40.000 0.00 0.00 0.00 3.55
2904 3146 5.122396 GGAAAATAAGTGTGAGCCTAGTGTG 59.878 44.000 0.00 0.00 0.00 3.82
2905 3147 2.743636 TAAGTGTGAGCCTAGTGTGC 57.256 50.000 0.00 0.00 0.00 4.57
2906 3148 0.035458 AAGTGTGAGCCTAGTGTGCC 59.965 55.000 0.00 0.00 0.00 5.01
2907 3149 1.376037 GTGTGAGCCTAGTGTGCCC 60.376 63.158 0.00 0.00 0.00 5.36
2908 3150 2.269241 GTGAGCCTAGTGTGCCCC 59.731 66.667 0.00 0.00 0.00 5.80
2909 3151 2.122729 TGAGCCTAGTGTGCCCCT 59.877 61.111 0.00 0.00 0.00 4.79
2910 3152 0.976073 GTGAGCCTAGTGTGCCCCTA 60.976 60.000 0.00 0.00 0.00 3.53
2911 3153 0.687757 TGAGCCTAGTGTGCCCCTAG 60.688 60.000 0.00 0.00 33.23 3.02
2924 3166 1.931635 CCCCTAGGCTACAGATCCTC 58.068 60.000 2.05 0.00 34.02 3.71
2925 3167 1.148027 CCCCTAGGCTACAGATCCTCA 59.852 57.143 2.05 0.00 34.02 3.86
2926 3168 2.426414 CCCCTAGGCTACAGATCCTCAA 60.426 54.545 2.05 0.00 34.02 3.02
2927 3169 3.309296 CCCTAGGCTACAGATCCTCAAA 58.691 50.000 2.05 0.00 34.02 2.69
2928 3170 3.906846 CCCTAGGCTACAGATCCTCAAAT 59.093 47.826 2.05 0.00 34.02 2.32
2929 3171 4.262808 CCCTAGGCTACAGATCCTCAAATG 60.263 50.000 2.05 0.00 34.02 2.32
2930 3172 4.590647 CCTAGGCTACAGATCCTCAAATGA 59.409 45.833 0.00 0.00 34.02 2.57
2931 3173 5.070981 CCTAGGCTACAGATCCTCAAATGAA 59.929 44.000 0.00 0.00 34.02 2.57
2932 3174 5.643421 AGGCTACAGATCCTCAAATGAAT 57.357 39.130 0.00 0.00 0.00 2.57
2933 3175 6.753913 AGGCTACAGATCCTCAAATGAATA 57.246 37.500 0.00 0.00 0.00 1.75
2934 3176 7.327064 AGGCTACAGATCCTCAAATGAATAT 57.673 36.000 0.00 0.00 0.00 1.28
2935 3177 7.753630 AGGCTACAGATCCTCAAATGAATATT 58.246 34.615 0.00 0.00 0.00 1.28
2936 3178 8.884323 AGGCTACAGATCCTCAAATGAATATTA 58.116 33.333 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 213 7.307989 GCTGCGAGACCACAAATGTAATTATAT 60.308 37.037 0.00 0.00 33.67 0.86
212 217 3.119849 GCTGCGAGACCACAAATGTAATT 60.120 43.478 0.00 0.00 38.98 1.40
242 278 9.974750 GACTTTATACAAGAATCTTTAGCACAC 57.025 33.333 0.00 0.00 0.00 3.82
267 303 9.755804 TGCATATTTGTTTTGTATTTGAACAGA 57.244 25.926 0.00 0.00 35.04 3.41
330 372 3.069729 ACTGCTAACTTTCCTTCACTCGT 59.930 43.478 0.00 0.00 0.00 4.18
337 379 3.006537 TCACGCTACTGCTAACTTTCCTT 59.993 43.478 0.00 0.00 36.97 3.36
362 404 1.281960 CCGTACGCGCTACTGCTAT 59.718 57.895 10.49 0.00 36.97 2.97
568 612 9.593565 TCATAGTCTTCTCCTACAATACATCAT 57.406 33.333 0.00 0.00 0.00 2.45
580 624 6.016943 GCGTACATAGTTCATAGTCTTCTCCT 60.017 42.308 0.00 0.00 0.00 3.69
581 625 6.144175 GCGTACATAGTTCATAGTCTTCTCC 58.856 44.000 0.00 0.00 0.00 3.71
582 626 6.726230 TGCGTACATAGTTCATAGTCTTCTC 58.274 40.000 0.00 0.00 0.00 2.87
583 627 6.694877 TGCGTACATAGTTCATAGTCTTCT 57.305 37.500 0.00 0.00 0.00 2.85
584 628 7.932120 AATGCGTACATAGTTCATAGTCTTC 57.068 36.000 0.00 0.00 34.62 2.87
585 629 8.198109 AGAAATGCGTACATAGTTCATAGTCTT 58.802 33.333 8.59 0.00 34.62 3.01
586 630 7.717568 AGAAATGCGTACATAGTTCATAGTCT 58.282 34.615 8.59 0.00 34.62 3.24
587 631 7.932120 AGAAATGCGTACATAGTTCATAGTC 57.068 36.000 8.59 0.00 34.62 2.59
598 642 8.540492 GCGCTATATTTATAGAAATGCGTACAT 58.460 33.333 20.20 4.16 42.48 2.29
599 643 7.253519 CGCGCTATATTTATAGAAATGCGTACA 60.254 37.037 20.20 0.00 42.48 2.90
600 644 7.049620 CGCGCTATATTTATAGAAATGCGTAC 58.950 38.462 20.20 9.28 42.48 3.67
601 645 6.291427 GCGCGCTATATTTATAGAAATGCGTA 60.291 38.462 26.67 6.24 42.48 4.42
602 646 5.500290 GCGCGCTATATTTATAGAAATGCGT 60.500 40.000 26.67 5.58 42.48 5.24
603 647 4.892880 GCGCGCTATATTTATAGAAATGCG 59.107 41.667 26.67 16.95 42.95 4.73
604 648 5.006746 AGGCGCGCTATATTTATAGAAATGC 59.993 40.000 32.29 7.15 38.30 3.56
605 649 6.414079 CAGGCGCGCTATATTTATAGAAATG 58.586 40.000 32.29 4.55 38.30 2.32
606 650 5.006746 GCAGGCGCGCTATATTTATAGAAAT 59.993 40.000 32.29 0.35 38.30 2.17
607 651 4.328983 GCAGGCGCGCTATATTTATAGAAA 59.671 41.667 32.29 0.00 38.30 2.52
608 652 3.863424 GCAGGCGCGCTATATTTATAGAA 59.137 43.478 32.29 0.00 38.30 2.10
609 653 3.130516 AGCAGGCGCGCTATATTTATAGA 59.869 43.478 32.29 0.00 45.49 1.98
610 654 3.243877 CAGCAGGCGCGCTATATTTATAG 59.756 47.826 32.29 7.33 45.49 1.31
611 655 3.186909 CAGCAGGCGCGCTATATTTATA 58.813 45.455 32.29 0.00 45.49 0.98
612 656 2.002586 CAGCAGGCGCGCTATATTTAT 58.997 47.619 32.29 6.21 45.49 1.40
613 657 1.428448 CAGCAGGCGCGCTATATTTA 58.572 50.000 32.29 0.00 45.49 1.40
614 658 1.230635 CCAGCAGGCGCGCTATATTT 61.231 55.000 32.29 9.28 45.49 1.40
615 659 1.669115 CCAGCAGGCGCGCTATATT 60.669 57.895 32.29 10.43 45.49 1.28
616 660 2.047844 CCAGCAGGCGCGCTATAT 60.048 61.111 32.29 12.41 45.49 0.86
617 661 3.212906 CTCCAGCAGGCGCGCTATA 62.213 63.158 32.29 8.72 45.49 1.31
618 662 4.598894 CTCCAGCAGGCGCGCTAT 62.599 66.667 32.29 17.65 45.49 2.97
637 681 1.654023 AAATAAAGCACGCCCGAGCC 61.654 55.000 6.48 0.00 34.57 4.70
638 682 0.170339 AAAATAAAGCACGCCCGAGC 59.830 50.000 1.88 1.88 0.00 5.03
639 683 1.895051 CAAAATAAAGCACGCCCGAG 58.105 50.000 0.00 0.00 0.00 4.63
640 684 0.109504 GCAAAATAAAGCACGCCCGA 60.110 50.000 0.00 0.00 0.00 5.14
641 685 1.402479 CGCAAAATAAAGCACGCCCG 61.402 55.000 0.00 0.00 0.00 6.13
642 686 1.075979 CCGCAAAATAAAGCACGCCC 61.076 55.000 0.00 0.00 0.00 6.13
643 687 1.682867 GCCGCAAAATAAAGCACGCC 61.683 55.000 0.00 0.00 0.00 5.68
644 688 1.701730 GCCGCAAAATAAAGCACGC 59.298 52.632 0.00 0.00 0.00 5.34
645 689 1.402479 CCGCCGCAAAATAAAGCACG 61.402 55.000 0.00 0.00 0.00 5.34
646 690 1.682867 GCCGCCGCAAAATAAAGCAC 61.683 55.000 0.00 0.00 34.03 4.40
647 691 1.445238 GCCGCCGCAAAATAAAGCA 60.445 52.632 0.00 0.00 34.03 3.91
648 692 2.164663 GGCCGCCGCAAAATAAAGC 61.165 57.895 0.00 0.00 36.38 3.51
649 693 1.871789 CGGCCGCCGCAAAATAAAG 60.872 57.895 20.79 0.00 41.17 1.85
650 694 2.179517 CGGCCGCCGCAAAATAAA 59.820 55.556 20.79 0.00 41.17 1.40
684 728 4.999939 CCAGGTTTTGTGCGCGGC 63.000 66.667 8.83 0.00 0.00 6.53
685 729 4.999939 GCCAGGTTTTGTGCGCGG 63.000 66.667 8.83 0.00 0.00 6.46
686 730 3.879351 GAGCCAGGTTTTGTGCGCG 62.879 63.158 0.00 0.00 0.00 6.86
687 731 2.050077 GAGCCAGGTTTTGTGCGC 60.050 61.111 0.00 0.00 0.00 6.09
688 732 1.008538 GTGAGCCAGGTTTTGTGCG 60.009 57.895 0.00 0.00 0.00 5.34
689 733 1.363807 GGTGAGCCAGGTTTTGTGC 59.636 57.895 0.00 0.00 34.09 4.57
690 734 1.795170 CGGGTGAGCCAGGTTTTGTG 61.795 60.000 0.08 0.00 36.17 3.33
691 735 1.528309 CGGGTGAGCCAGGTTTTGT 60.528 57.895 0.08 0.00 36.17 2.83
692 736 2.268076 CCGGGTGAGCCAGGTTTTG 61.268 63.158 0.08 0.00 43.90 2.44
693 737 2.115266 CCGGGTGAGCCAGGTTTT 59.885 61.111 0.08 0.00 43.90 2.43
701 745 4.530857 ATACAGCGCCGGGTGAGC 62.531 66.667 12.72 7.47 44.37 4.26
702 746 1.883084 GAATACAGCGCCGGGTGAG 60.883 63.158 12.72 5.33 44.37 3.51
703 747 2.185867 GAATACAGCGCCGGGTGA 59.814 61.111 12.72 0.00 44.37 4.02
704 748 2.173669 CAGAATACAGCGCCGGGTG 61.174 63.158 2.29 2.44 46.91 4.61
705 749 2.186903 CAGAATACAGCGCCGGGT 59.813 61.111 2.29 2.41 0.00 5.28
706 750 1.883084 GTCAGAATACAGCGCCGGG 60.883 63.158 2.29 0.00 0.00 5.73
707 751 0.460284 AAGTCAGAATACAGCGCCGG 60.460 55.000 2.29 0.00 0.00 6.13
708 752 1.359848 AAAGTCAGAATACAGCGCCG 58.640 50.000 2.29 0.00 0.00 6.46
709 753 3.242446 GCTAAAAGTCAGAATACAGCGCC 60.242 47.826 2.29 0.00 0.00 6.53
710 754 3.542291 CGCTAAAAGTCAGAATACAGCGC 60.542 47.826 0.00 0.00 43.22 5.92
711 755 4.170125 CGCTAAAAGTCAGAATACAGCG 57.830 45.455 6.36 6.36 43.66 5.18
712 756 3.242446 GCCGCTAAAAGTCAGAATACAGC 60.242 47.826 0.00 0.00 0.00 4.40
713 757 3.309954 GGCCGCTAAAAGTCAGAATACAG 59.690 47.826 0.00 0.00 0.00 2.74
714 758 3.267483 GGCCGCTAAAAGTCAGAATACA 58.733 45.455 0.00 0.00 0.00 2.29
715 759 2.612672 GGGCCGCTAAAAGTCAGAATAC 59.387 50.000 0.00 0.00 0.00 1.89
716 760 2.237643 TGGGCCGCTAAAAGTCAGAATA 59.762 45.455 0.00 0.00 0.00 1.75
717 761 1.004277 TGGGCCGCTAAAAGTCAGAAT 59.996 47.619 0.00 0.00 0.00 2.40
718 762 0.398696 TGGGCCGCTAAAAGTCAGAA 59.601 50.000 0.00 0.00 0.00 3.02
719 763 0.321298 GTGGGCCGCTAAAAGTCAGA 60.321 55.000 10.52 0.00 0.00 3.27
720 764 0.605319 TGTGGGCCGCTAAAAGTCAG 60.605 55.000 19.39 0.00 0.00 3.51
721 765 0.179015 TTGTGGGCCGCTAAAAGTCA 60.179 50.000 19.39 0.00 0.00 3.41
722 766 0.955905 TTTGTGGGCCGCTAAAAGTC 59.044 50.000 19.39 0.00 0.00 3.01
723 767 1.404843 TTTTGTGGGCCGCTAAAAGT 58.595 45.000 21.45 0.00 0.00 2.66
724 768 2.741759 ATTTTGTGGGCCGCTAAAAG 57.258 45.000 25.92 0.00 0.00 2.27
725 769 3.056465 CCTAATTTTGTGGGCCGCTAAAA 60.056 43.478 25.92 23.30 0.00 1.52
726 770 2.494073 CCTAATTTTGTGGGCCGCTAAA 59.506 45.455 24.75 24.75 0.00 1.85
727 771 2.096248 CCTAATTTTGTGGGCCGCTAA 58.904 47.619 19.39 14.55 0.00 3.09
728 772 1.282447 TCCTAATTTTGTGGGCCGCTA 59.718 47.619 19.39 8.08 0.00 4.26
735 779 3.376859 TGTATGCGCTCCTAATTTTGTGG 59.623 43.478 9.73 0.00 0.00 4.17
759 803 3.906649 GCTCTGTCATCGCGTGCG 61.907 66.667 5.77 8.14 41.35 5.34
769 813 0.449388 CTCAAATTGCGGGCTCTGTC 59.551 55.000 0.00 0.00 0.00 3.51
810 854 1.457823 ATAACGACTATGCCGGCCGA 61.458 55.000 30.73 8.21 0.00 5.54
867 911 1.231751 AGGGATCAGTGGAGGGAGGA 61.232 60.000 0.00 0.00 0.00 3.71
872 916 1.003442 TGGGAGGGATCAGTGGAGG 59.997 63.158 0.00 0.00 0.00 4.30
877 921 1.081833 AGCAGTGGGAGGGATCAGT 59.918 57.895 0.00 0.00 0.00 3.41
880 924 1.050988 TAGCAGCAGTGGGAGGGATC 61.051 60.000 0.00 0.00 0.00 3.36
882 926 1.687146 CTAGCAGCAGTGGGAGGGA 60.687 63.158 0.00 0.00 0.00 4.20
973 1017 0.459237 CAGCGCCGATGGATAGGATC 60.459 60.000 2.29 0.00 0.00 3.36
974 1018 1.188219 ACAGCGCCGATGGATAGGAT 61.188 55.000 7.47 0.00 0.00 3.24
975 1019 1.832608 ACAGCGCCGATGGATAGGA 60.833 57.895 7.47 0.00 0.00 2.94
1209 1259 0.037326 TGGACATGAACTGCTCGTCC 60.037 55.000 0.00 0.00 45.24 4.79
1412 1468 2.048222 ACGAGGACGACGACGGTA 60.048 61.111 12.58 0.00 44.46 4.02
1444 1512 4.767255 CTCCACCACCTCCGCAGC 62.767 72.222 0.00 0.00 0.00 5.25
1445 1513 4.087892 CCTCCACCACCTCCGCAG 62.088 72.222 0.00 0.00 0.00 5.18
1446 1514 4.954118 ACCTCCACCACCTCCGCA 62.954 66.667 0.00 0.00 0.00 5.69
1545 1616 3.322466 ACCACCTCCTCCCGCTTG 61.322 66.667 0.00 0.00 0.00 4.01
1626 1697 4.450976 TCGACCATGGGAATGAATTACTG 58.549 43.478 18.09 0.00 0.00 2.74
1627 1698 4.771114 TCGACCATGGGAATGAATTACT 57.229 40.909 18.09 0.00 0.00 2.24
1634 1707 2.645838 AGGAATCGACCATGGGAATG 57.354 50.000 18.09 2.41 0.00 2.67
1644 1717 3.551250 GGATCGAAGGAGAAGGAATCGAC 60.551 52.174 0.00 0.00 44.20 4.20
1658 1731 2.481854 CATGGAGAGCAAGGATCGAAG 58.518 52.381 0.00 0.00 0.00 3.79
1673 1762 2.168313 TGATCTTACTTGCTCGCATGGA 59.832 45.455 9.21 0.00 0.00 3.41
1699 1788 3.181437 ACCCCAAACCAACCAGTAGTTAG 60.181 47.826 0.00 0.00 36.18 2.34
1700 1789 2.784682 ACCCCAAACCAACCAGTAGTTA 59.215 45.455 0.00 0.00 36.18 2.24
1703 1792 1.960689 CAACCCCAAACCAACCAGTAG 59.039 52.381 0.00 0.00 0.00 2.57
1705 1794 1.334384 GCAACCCCAAACCAACCAGT 61.334 55.000 0.00 0.00 0.00 4.00
1953 2043 2.455674 TGGTGAAGAAGACGACCATG 57.544 50.000 0.00 0.00 33.44 3.66
1954 2044 2.550208 GGTTGGTGAAGAAGACGACCAT 60.550 50.000 0.00 0.00 38.28 3.55
1955 2045 1.202604 GGTTGGTGAAGAAGACGACCA 60.203 52.381 0.00 0.00 36.68 4.02
1960 2052 3.140325 TGGATGGTTGGTGAAGAAGAC 57.860 47.619 0.00 0.00 0.00 3.01
1977 2069 9.213777 AGATAAGTACAGTAGGAAATTGATGGA 57.786 33.333 0.00 0.00 0.00 3.41
2031 2123 7.690952 TGTTTAAAACTCTGTACAGTTTGGT 57.309 32.000 21.99 13.48 44.28 3.67
2032 2124 9.581099 AAATGTTTAAAACTCTGTACAGTTTGG 57.419 29.630 21.99 12.92 44.28 3.28
2034 2126 9.083080 GCAAATGTTTAAAACTCTGTACAGTTT 57.917 29.630 21.99 16.79 46.51 2.66
2050 2160 5.720371 ACATACAAGCCAGCAAATGTTTA 57.280 34.783 0.00 0.00 0.00 2.01
2096 2211 5.862924 TGCTACATTGCTAAGTCTCAAAC 57.137 39.130 0.00 0.00 0.00 2.93
2099 2214 5.604758 AGATGCTACATTGCTAAGTCTCA 57.395 39.130 0.00 0.00 0.00 3.27
2109 2224 7.076362 CAGCTGCTAATTAAGATGCTACATTG 58.924 38.462 0.00 0.00 34.79 2.82
2110 2225 6.206243 CCAGCTGCTAATTAAGATGCTACATT 59.794 38.462 8.66 0.00 34.79 2.71
2112 2227 5.059161 CCAGCTGCTAATTAAGATGCTACA 58.941 41.667 8.66 0.00 34.79 2.74
2113 2228 4.083590 GCCAGCTGCTAATTAAGATGCTAC 60.084 45.833 8.66 0.00 34.79 3.58
2115 2230 2.883386 GCCAGCTGCTAATTAAGATGCT 59.117 45.455 8.66 0.00 36.25 3.79
2117 2232 3.252701 CAGGCCAGCTGCTAATTAAGATG 59.747 47.826 8.66 0.00 40.92 2.90
2118 2233 3.484407 CAGGCCAGCTGCTAATTAAGAT 58.516 45.455 8.66 0.00 40.92 2.40
2119 2234 2.923121 CAGGCCAGCTGCTAATTAAGA 58.077 47.619 8.66 0.00 40.92 2.10
2120 2235 1.336125 GCAGGCCAGCTGCTAATTAAG 59.664 52.381 13.78 0.00 43.81 1.85
2139 2254 6.749923 AAGAAGTCATGTCAAATAGGAAGC 57.250 37.500 0.00 0.00 0.00 3.86
2141 2256 8.156820 TCAGAAAGAAGTCATGTCAAATAGGAA 58.843 33.333 0.00 0.00 0.00 3.36
2143 2258 7.912056 TCAGAAAGAAGTCATGTCAAATAGG 57.088 36.000 0.00 0.00 0.00 2.57
2144 2259 9.770503 CATTCAGAAAGAAGTCATGTCAAATAG 57.229 33.333 0.00 0.00 40.15 1.73
2145 2260 9.288576 ACATTCAGAAAGAAGTCATGTCAAATA 57.711 29.630 0.00 0.00 40.15 1.40
2193 2324 2.772515 GGGTGTGAGATTAGTTAGGCCT 59.227 50.000 11.78 11.78 0.00 5.19
2220 2351 7.624360 TGCGGACAATTTAGAATGATAGTTT 57.376 32.000 0.00 0.00 0.00 2.66
2221 2352 7.624360 TTGCGGACAATTTAGAATGATAGTT 57.376 32.000 0.00 0.00 0.00 2.24
2222 2353 7.624360 TTTGCGGACAATTTAGAATGATAGT 57.376 32.000 0.00 0.00 35.21 2.12
2224 2355 8.134895 GGAATTTGCGGACAATTTAGAATGATA 58.865 33.333 0.00 0.00 35.21 2.15
2225 2356 6.980397 GGAATTTGCGGACAATTTAGAATGAT 59.020 34.615 0.00 0.00 35.21 2.45
2227 2358 6.332630 AGGAATTTGCGGACAATTTAGAATG 58.667 36.000 0.00 0.00 35.21 2.67
2229 2360 5.975693 AGGAATTTGCGGACAATTTAGAA 57.024 34.783 0.00 0.00 35.21 2.10
2230 2361 5.710099 AGAAGGAATTTGCGGACAATTTAGA 59.290 36.000 0.00 0.00 35.21 2.10
2231 2362 5.801947 CAGAAGGAATTTGCGGACAATTTAG 59.198 40.000 0.00 0.00 35.21 1.85
2232 2363 5.475220 TCAGAAGGAATTTGCGGACAATTTA 59.525 36.000 0.00 0.00 35.21 1.40
2234 2365 3.826157 TCAGAAGGAATTTGCGGACAATT 59.174 39.130 0.00 0.00 35.21 2.32
2235 2366 3.420893 TCAGAAGGAATTTGCGGACAAT 58.579 40.909 0.00 0.00 35.21 2.71
2237 2368 2.559698 TCAGAAGGAATTTGCGGACA 57.440 45.000 0.00 0.00 0.00 4.02
2238 2369 3.915437 TTTCAGAAGGAATTTGCGGAC 57.085 42.857 0.00 0.00 34.91 4.79
2239 2370 6.458206 CGAATATTTCAGAAGGAATTTGCGGA 60.458 38.462 0.00 0.00 34.91 5.54
2242 2373 7.322222 CGATCGAATATTTCAGAAGGAATTTGC 59.678 37.037 10.26 0.00 34.91 3.68
2243 2374 8.551205 TCGATCGAATATTTCAGAAGGAATTTG 58.449 33.333 16.99 0.00 34.91 2.32
2244 2375 8.662781 TCGATCGAATATTTCAGAAGGAATTT 57.337 30.769 16.99 0.00 34.91 1.82
2245 2376 7.386299 CCTCGATCGAATATTTCAGAAGGAATT 59.614 37.037 19.92 0.00 34.91 2.17
2246 2377 6.870965 CCTCGATCGAATATTTCAGAAGGAAT 59.129 38.462 19.92 0.00 34.91 3.01
2248 2379 5.773575 CCTCGATCGAATATTTCAGAAGGA 58.226 41.667 19.92 0.00 0.00 3.36
2249 2380 4.387256 GCCTCGATCGAATATTTCAGAAGG 59.613 45.833 19.92 12.65 0.00 3.46
2277 2509 2.280119 GCCAGTCAGTCACACGCA 60.280 61.111 0.00 0.00 0.00 5.24
2278 2510 2.280119 TGCCAGTCAGTCACACGC 60.280 61.111 0.00 0.00 0.00 5.34
2279 2511 1.665916 CCTGCCAGTCAGTCACACG 60.666 63.158 0.00 0.00 41.25 4.49
2285 2526 3.644606 CCTGCCCTGCCAGTCAGT 61.645 66.667 9.43 0.00 41.25 3.41
2292 2533 1.973812 GAAGTTGACCTGCCCTGCC 60.974 63.158 0.00 0.00 0.00 4.85
2301 2543 3.932089 GCAGATCTCTGAAGAAGTTGACC 59.068 47.826 11.34 0.00 46.59 4.02
2461 2703 2.614057 CTGCTTCGGGAATGGTCATTAC 59.386 50.000 0.00 0.00 0.00 1.89
2468 2710 2.409870 GGTGCTGCTTCGGGAATGG 61.410 63.158 0.00 0.00 0.00 3.16
2480 2722 2.704464 TCTGATTCTGATGGGTGCTG 57.296 50.000 0.00 0.00 0.00 4.41
2481 2723 2.775960 TCATCTGATTCTGATGGGTGCT 59.224 45.455 24.71 0.00 39.29 4.40
2482 2724 3.139850 CTCATCTGATTCTGATGGGTGC 58.860 50.000 24.71 0.00 39.29 5.01
2579 2821 9.829507 CTGTAATTCAGTTCATTCTCTTCCTAT 57.170 33.333 0.00 0.00 39.17 2.57
2580 2822 7.766278 GCTGTAATTCAGTTCATTCTCTTCCTA 59.234 37.037 6.72 0.00 45.23 2.94
2581 2823 6.597280 GCTGTAATTCAGTTCATTCTCTTCCT 59.403 38.462 6.72 0.00 45.23 3.36
2582 2824 6.183360 GGCTGTAATTCAGTTCATTCTCTTCC 60.183 42.308 6.72 0.00 45.23 3.46
2583 2825 6.372659 TGGCTGTAATTCAGTTCATTCTCTTC 59.627 38.462 6.72 0.00 45.23 2.87
2584 2826 6.240894 TGGCTGTAATTCAGTTCATTCTCTT 58.759 36.000 6.72 0.00 45.23 2.85
2585 2827 5.809001 TGGCTGTAATTCAGTTCATTCTCT 58.191 37.500 6.72 0.00 45.23 3.10
2586 2828 6.690194 ATGGCTGTAATTCAGTTCATTCTC 57.310 37.500 6.72 0.00 45.23 2.87
2587 2829 7.093322 GAATGGCTGTAATTCAGTTCATTCT 57.907 36.000 24.15 12.03 46.79 2.40
2589 2831 5.163622 CGGAATGGCTGTAATTCAGTTCATT 60.164 40.000 17.24 17.24 44.18 2.57
2590 2832 4.336433 CGGAATGGCTGTAATTCAGTTCAT 59.664 41.667 6.72 7.73 45.23 2.57
2591 2833 3.689161 CGGAATGGCTGTAATTCAGTTCA 59.311 43.478 6.72 6.31 45.23 3.18
2592 2834 3.487544 GCGGAATGGCTGTAATTCAGTTC 60.488 47.826 6.72 3.88 45.23 3.01
2593 2835 2.423538 GCGGAATGGCTGTAATTCAGTT 59.576 45.455 6.72 0.00 45.23 3.16
2594 2836 2.017049 GCGGAATGGCTGTAATTCAGT 58.983 47.619 6.72 0.00 45.23 3.41
2595 2837 2.292267 AGCGGAATGGCTGTAATTCAG 58.708 47.619 0.00 0.00 42.86 3.02
2596 2838 2.418368 AGCGGAATGGCTGTAATTCA 57.582 45.000 0.00 0.00 42.86 2.57
2597 2839 4.335594 ACTTTAGCGGAATGGCTGTAATTC 59.664 41.667 0.00 0.00 44.50 2.17
2598 2840 4.270008 ACTTTAGCGGAATGGCTGTAATT 58.730 39.130 0.00 0.00 44.50 1.40
2599 2841 3.877508 GACTTTAGCGGAATGGCTGTAAT 59.122 43.478 0.00 0.00 44.50 1.89
2600 2842 3.055385 AGACTTTAGCGGAATGGCTGTAA 60.055 43.478 0.00 0.00 44.50 2.41
2601 2843 2.500098 AGACTTTAGCGGAATGGCTGTA 59.500 45.455 0.00 0.00 44.50 2.74
2602 2844 1.279271 AGACTTTAGCGGAATGGCTGT 59.721 47.619 0.00 0.00 44.50 4.40
2603 2845 2.029838 AGACTTTAGCGGAATGGCTG 57.970 50.000 0.00 0.00 44.50 4.85
2604 2846 5.746990 ATATAGACTTTAGCGGAATGGCT 57.253 39.130 2.07 2.07 46.88 4.75
2605 2847 5.932303 TCAATATAGACTTTAGCGGAATGGC 59.068 40.000 0.00 0.00 0.00 4.40
2606 2848 7.360438 GCTTCAATATAGACTTTAGCGGAATGG 60.360 40.741 0.00 0.00 0.00 3.16
2607 2849 7.360438 GGCTTCAATATAGACTTTAGCGGAATG 60.360 40.741 0.00 0.00 0.00 2.67
2608 2850 6.651225 GGCTTCAATATAGACTTTAGCGGAAT 59.349 38.462 0.00 0.00 0.00 3.01
2609 2851 5.989777 GGCTTCAATATAGACTTTAGCGGAA 59.010 40.000 0.00 0.00 0.00 4.30
2610 2852 5.304614 AGGCTTCAATATAGACTTTAGCGGA 59.695 40.000 0.00 0.00 0.00 5.54
2611 2853 5.542779 AGGCTTCAATATAGACTTTAGCGG 58.457 41.667 0.00 0.00 0.00 5.52
2612 2854 6.216569 TGAGGCTTCAATATAGACTTTAGCG 58.783 40.000 0.00 0.00 28.87 4.26
2644 2886 9.598517 TGAGCACTTTTTAAATCTGAAATGTTT 57.401 25.926 0.00 0.00 0.00 2.83
2645 2887 9.034544 GTGAGCACTTTTTAAATCTGAAATGTT 57.965 29.630 0.00 0.00 0.00 2.71
2646 2888 8.196771 TGTGAGCACTTTTTAAATCTGAAATGT 58.803 29.630 1.99 0.00 0.00 2.71
2647 2889 8.578308 TGTGAGCACTTTTTAAATCTGAAATG 57.422 30.769 1.99 0.00 0.00 2.32
2747 2989 9.906660 TGCTTTATTTACTACAGGAAAAACATG 57.093 29.630 0.00 0.00 36.29 3.21
2805 3047 4.223659 GTGAACACACGTGAACACTTTTT 58.776 39.130 25.01 0.00 37.28 1.94
2806 3048 3.251245 TGTGAACACACGTGAACACTTTT 59.749 39.130 25.01 0.00 39.09 2.27
2807 3049 2.809119 TGTGAACACACGTGAACACTTT 59.191 40.909 25.01 5.22 39.09 2.66
2808 3050 2.418692 TGTGAACACACGTGAACACTT 58.581 42.857 25.01 5.14 39.09 3.16
2809 3051 2.087501 TGTGAACACACGTGAACACT 57.912 45.000 25.01 0.00 39.09 3.55
2810 3052 2.884663 TTGTGAACACACGTGAACAC 57.115 45.000 25.01 22.66 41.67 3.32
2811 3053 2.809119 ACTTTGTGAACACACGTGAACA 59.191 40.909 25.01 14.48 41.67 3.18
2812 3054 3.465122 ACTTTGTGAACACACGTGAAC 57.535 42.857 25.01 12.11 41.67 3.18
2813 3055 4.222886 CAAACTTTGTGAACACACGTGAA 58.777 39.130 25.01 0.19 41.67 3.18
2814 3056 3.251245 ACAAACTTTGTGAACACACGTGA 59.749 39.130 25.01 0.00 43.48 4.35
2815 3057 3.560503 ACAAACTTTGTGAACACACGTG 58.439 40.909 15.48 15.48 43.48 4.49
2816 3058 3.907894 ACAAACTTTGTGAACACACGT 57.092 38.095 6.35 5.39 43.48 4.49
2826 3068 3.393089 TGGCAAACACACAAACTTTGT 57.607 38.095 1.00 1.00 46.75 2.83
2827 3069 4.943142 ATTGGCAAACACACAAACTTTG 57.057 36.364 3.01 0.00 0.00 2.77
2828 3070 5.956068 AAATTGGCAAACACACAAACTTT 57.044 30.435 3.01 0.00 0.00 2.66
2829 3071 5.956068 AAAATTGGCAAACACACAAACTT 57.044 30.435 3.01 0.00 0.00 2.66
2830 3072 5.956068 AAAAATTGGCAAACACACAAACT 57.044 30.435 3.01 0.00 0.00 2.66
2872 3114 9.646522 AGGCTCACACTTATTTTCCATTTATAT 57.353 29.630 0.00 0.00 0.00 0.86
2874 3116 7.961326 AGGCTCACACTTATTTTCCATTTAT 57.039 32.000 0.00 0.00 0.00 1.40
2875 3117 8.107095 ACTAGGCTCACACTTATTTTCCATTTA 58.893 33.333 0.00 0.00 0.00 1.40
2876 3118 6.948309 ACTAGGCTCACACTTATTTTCCATTT 59.052 34.615 0.00 0.00 0.00 2.32
2877 3119 6.375455 CACTAGGCTCACACTTATTTTCCATT 59.625 38.462 0.00 0.00 0.00 3.16
2878 3120 5.882557 CACTAGGCTCACACTTATTTTCCAT 59.117 40.000 0.00 0.00 0.00 3.41
2879 3121 5.221843 ACACTAGGCTCACACTTATTTTCCA 60.222 40.000 0.00 0.00 0.00 3.53
2880 3122 5.122396 CACACTAGGCTCACACTTATTTTCC 59.878 44.000 0.00 0.00 0.00 3.13
2881 3123 5.390991 GCACACTAGGCTCACACTTATTTTC 60.391 44.000 0.00 0.00 0.00 2.29
2882 3124 4.455877 GCACACTAGGCTCACACTTATTTT 59.544 41.667 0.00 0.00 0.00 1.82
2883 3125 4.003648 GCACACTAGGCTCACACTTATTT 58.996 43.478 0.00 0.00 0.00 1.40
2884 3126 3.600388 GCACACTAGGCTCACACTTATT 58.400 45.455 0.00 0.00 0.00 1.40
2885 3127 2.093447 GGCACACTAGGCTCACACTTAT 60.093 50.000 0.00 0.00 0.00 1.73
2886 3128 1.275291 GGCACACTAGGCTCACACTTA 59.725 52.381 0.00 0.00 0.00 2.24
2887 3129 0.035458 GGCACACTAGGCTCACACTT 59.965 55.000 0.00 0.00 0.00 3.16
2888 3130 1.674057 GGCACACTAGGCTCACACT 59.326 57.895 0.00 0.00 0.00 3.55
2889 3131 1.376037 GGGCACACTAGGCTCACAC 60.376 63.158 0.00 0.00 0.00 3.82
2890 3132 2.592993 GGGGCACACTAGGCTCACA 61.593 63.158 0.00 0.00 34.12 3.58
2891 3133 0.976073 TAGGGGCACACTAGGCTCAC 60.976 60.000 0.00 0.00 36.93 3.51
2892 3134 0.687757 CTAGGGGCACACTAGGCTCA 60.688 60.000 0.00 0.00 36.93 4.26
2893 3135 2.128729 CTAGGGGCACACTAGGCTC 58.871 63.158 0.00 0.00 35.42 4.70
2894 3136 4.382852 CTAGGGGCACACTAGGCT 57.617 61.111 0.00 0.00 35.42 4.58
2904 3146 4.760838 TGAGGATCTGTAGCCTAGGGGC 62.761 59.091 11.72 0.00 43.21 5.80
2905 3147 1.148027 TGAGGATCTGTAGCCTAGGGG 59.852 57.143 11.72 0.00 43.21 4.79
2906 3148 2.685106 TGAGGATCTGTAGCCTAGGG 57.315 55.000 11.72 0.00 43.21 3.53
2907 3149 4.590647 TCATTTGAGGATCTGTAGCCTAGG 59.409 45.833 3.67 3.67 43.21 3.02
2908 3150 5.798125 TCATTTGAGGATCTGTAGCCTAG 57.202 43.478 0.00 0.00 43.21 3.02
2909 3151 6.753913 ATTCATTTGAGGATCTGTAGCCTA 57.246 37.500 0.00 0.00 43.21 3.93
2910 3152 5.643421 ATTCATTTGAGGATCTGTAGCCT 57.357 39.130 0.00 0.00 46.86 4.58
2911 3153 7.992754 AATATTCATTTGAGGATCTGTAGCC 57.007 36.000 0.00 0.00 34.92 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.