Multiple sequence alignment - TraesCS7D01G432500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G432500 chr7D 100.000 3194 0 0 1 3194 552275881 552272688 0.000000e+00 5899.0
1 TraesCS7D01G432500 chr7D 94.211 190 10 1 1 189 552169153 552169342 4.030000e-74 289.0
2 TraesCS7D01G432500 chr7D 91.053 190 7 3 1 190 587078087 587077908 6.840000e-62 248.0
3 TraesCS7D01G432500 chr7B 90.397 2041 140 28 469 2464 597188258 597186229 0.000000e+00 2632.0
4 TraesCS7D01G432500 chr7A 92.413 1687 85 16 908 2558 637910793 637909114 0.000000e+00 2366.0
5 TraesCS7D01G432500 chr7A 89.045 639 60 9 2559 3191 24675261 24675895 0.000000e+00 784.0
6 TraesCS7D01G432500 chr7A 92.771 83 5 1 495 576 637910936 637910854 5.600000e-23 119.0
7 TraesCS7D01G432500 chr1D 92.480 625 40 6 2573 3191 405389415 405390038 0.000000e+00 887.0
8 TraesCS7D01G432500 chr1D 94.764 191 9 1 1 190 414247571 414247761 2.410000e-76 296.0
9 TraesCS7D01G432500 chr1D 92.929 198 12 2 1 196 236500483 236500680 1.450000e-73 287.0
10 TraesCS7D01G432500 chr1D 80.645 155 21 7 1063 1208 433409981 433409827 9.370000e-21 111.0
11 TraesCS7D01G432500 chr3D 92.147 624 46 3 2573 3194 22721472 22722094 0.000000e+00 878.0
12 TraesCS7D01G432500 chr3D 90.938 629 46 10 2573 3194 280280598 280279974 0.000000e+00 835.0
13 TraesCS7D01G432500 chr3D 92.000 200 12 3 1 199 594521132 594520936 8.730000e-71 278.0
14 TraesCS7D01G432500 chr3D 82.558 86 10 3 2420 2502 604696857 604696774 1.590000e-08 71.3
15 TraesCS7D01G432500 chr2B 91.506 624 49 4 2573 3193 452797928 452798550 0.000000e+00 856.0
16 TraesCS7D01G432500 chr2B 84.492 187 27 2 4 188 132805737 132805551 1.960000e-42 183.0
17 TraesCS7D01G432500 chr5B 91.506 624 48 5 2573 3194 530799612 530798992 0.000000e+00 854.0
18 TraesCS7D01G432500 chr5D 89.919 615 55 7 2574 3183 309407066 309407678 0.000000e+00 785.0
19 TraesCS7D01G432500 chr5D 93.814 194 11 1 1 193 29586584 29586391 1.120000e-74 291.0
20 TraesCS7D01G432500 chr4D 91.003 578 46 6 2620 3194 257765954 257766528 0.000000e+00 774.0
21 TraesCS7D01G432500 chr4D 91.667 72 5 1 120 190 395225226 395225297 7.290000e-17 99.0
22 TraesCS7D01G432500 chr6B 88.498 626 68 4 2571 3194 217469294 217469917 0.000000e+00 754.0
23 TraesCS7D01G432500 chr6B 77.372 411 75 9 1025 1432 644897650 644898045 8.910000e-56 228.0
24 TraesCS7D01G432500 chr4A 91.099 191 10 2 1 190 701573387 701573571 5.290000e-63 252.0
25 TraesCS7D01G432500 chr6D 78.450 413 67 12 1025 1432 428603720 428604115 1.900000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G432500 chr7D 552272688 552275881 3193 True 5899.0 5899 100.000 1 3194 1 chr7D.!!$R1 3193
1 TraesCS7D01G432500 chr7B 597186229 597188258 2029 True 2632.0 2632 90.397 469 2464 1 chr7B.!!$R1 1995
2 TraesCS7D01G432500 chr7A 637909114 637910936 1822 True 1242.5 2366 92.592 495 2558 2 chr7A.!!$R1 2063
3 TraesCS7D01G432500 chr7A 24675261 24675895 634 False 784.0 784 89.045 2559 3191 1 chr7A.!!$F1 632
4 TraesCS7D01G432500 chr1D 405389415 405390038 623 False 887.0 887 92.480 2573 3191 1 chr1D.!!$F2 618
5 TraesCS7D01G432500 chr3D 22721472 22722094 622 False 878.0 878 92.147 2573 3194 1 chr3D.!!$F1 621
6 TraesCS7D01G432500 chr3D 280279974 280280598 624 True 835.0 835 90.938 2573 3194 1 chr3D.!!$R1 621
7 TraesCS7D01G432500 chr2B 452797928 452798550 622 False 856.0 856 91.506 2573 3193 1 chr2B.!!$F1 620
8 TraesCS7D01G432500 chr5B 530798992 530799612 620 True 854.0 854 91.506 2573 3194 1 chr5B.!!$R1 621
9 TraesCS7D01G432500 chr5D 309407066 309407678 612 False 785.0 785 89.919 2574 3183 1 chr5D.!!$F1 609
10 TraesCS7D01G432500 chr4D 257765954 257766528 574 False 774.0 774 91.003 2620 3194 1 chr4D.!!$F1 574
11 TraesCS7D01G432500 chr6B 217469294 217469917 623 False 754.0 754 88.498 2571 3194 1 chr6B.!!$F1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 665 0.032615 GCTCTCCCTCTCCCTCTCAA 60.033 60.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2220 2254 0.038892 CACATGTTGCTTCCCAGTGC 60.039 55.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.876581 AGTTCAAACTGAATCCCCACC 58.123 47.619 0.00 0.00 38.79 4.61
23 24 2.447047 AGTTCAAACTGAATCCCCACCT 59.553 45.455 0.00 0.00 38.79 4.00
24 25 2.820197 GTTCAAACTGAATCCCCACCTC 59.180 50.000 0.00 0.00 38.79 3.85
25 26 2.061848 TCAAACTGAATCCCCACCTCA 58.938 47.619 0.00 0.00 0.00 3.86
26 27 2.649312 TCAAACTGAATCCCCACCTCAT 59.351 45.455 0.00 0.00 0.00 2.90
27 28 2.756760 CAAACTGAATCCCCACCTCATG 59.243 50.000 0.00 0.00 0.00 3.07
28 29 0.257039 ACTGAATCCCCACCTCATGC 59.743 55.000 0.00 0.00 0.00 4.06
29 30 0.256752 CTGAATCCCCACCTCATGCA 59.743 55.000 0.00 0.00 0.00 3.96
30 31 0.928505 TGAATCCCCACCTCATGCAT 59.071 50.000 0.00 0.00 0.00 3.96
31 32 1.288633 TGAATCCCCACCTCATGCATT 59.711 47.619 0.00 0.00 0.00 3.56
32 33 1.684983 GAATCCCCACCTCATGCATTG 59.315 52.381 0.00 0.00 0.00 2.82
33 34 0.632835 ATCCCCACCTCATGCATTGT 59.367 50.000 0.00 0.00 0.00 2.71
34 35 0.034186 TCCCCACCTCATGCATTGTC 60.034 55.000 0.00 0.00 0.00 3.18
35 36 1.039233 CCCCACCTCATGCATTGTCC 61.039 60.000 0.00 0.00 0.00 4.02
36 37 1.039233 CCCACCTCATGCATTGTCCC 61.039 60.000 0.00 0.00 0.00 4.46
37 38 0.323633 CCACCTCATGCATTGTCCCA 60.324 55.000 0.00 0.00 0.00 4.37
38 39 0.813184 CACCTCATGCATTGTCCCAC 59.187 55.000 0.00 0.00 0.00 4.61
39 40 0.677731 ACCTCATGCATTGTCCCACG 60.678 55.000 0.00 0.00 0.00 4.94
40 41 0.677731 CCTCATGCATTGTCCCACGT 60.678 55.000 0.00 0.00 0.00 4.49
41 42 0.448990 CTCATGCATTGTCCCACGTG 59.551 55.000 9.08 9.08 0.00 4.49
42 43 0.959867 TCATGCATTGTCCCACGTGG 60.960 55.000 28.26 28.26 0.00 4.94
64 65 4.141144 CACCCTTGCACTTGTCGT 57.859 55.556 0.00 0.00 0.00 4.34
65 66 1.648720 CACCCTTGCACTTGTCGTG 59.351 57.895 0.00 0.00 46.58 4.35
66 67 0.813610 CACCCTTGCACTTGTCGTGA 60.814 55.000 0.00 0.00 46.81 4.35
67 68 0.814010 ACCCTTGCACTTGTCGTGAC 60.814 55.000 0.00 0.00 46.81 3.67
68 69 1.564622 CCTTGCACTTGTCGTGACG 59.435 57.895 0.00 0.00 46.81 4.35
69 70 1.151777 CCTTGCACTTGTCGTGACGT 61.152 55.000 4.40 0.00 46.81 4.34
70 71 0.043053 CTTGCACTTGTCGTGACGTG 60.043 55.000 4.40 0.00 46.81 4.49
71 72 1.425267 TTGCACTTGTCGTGACGTGG 61.425 55.000 4.40 0.00 46.81 4.94
72 73 2.594962 GCACTTGTCGTGACGTGGG 61.595 63.158 4.40 0.00 46.81 4.61
73 74 1.227147 CACTTGTCGTGACGTGGGT 60.227 57.895 4.40 0.00 46.81 4.51
74 75 0.808453 CACTTGTCGTGACGTGGGTT 60.808 55.000 4.40 0.00 46.81 4.11
75 76 0.746063 ACTTGTCGTGACGTGGGTTA 59.254 50.000 4.40 0.00 0.00 2.85
76 77 1.342174 ACTTGTCGTGACGTGGGTTAT 59.658 47.619 4.40 0.00 0.00 1.89
77 78 2.224113 ACTTGTCGTGACGTGGGTTATT 60.224 45.455 4.40 0.00 0.00 1.40
78 79 3.005684 ACTTGTCGTGACGTGGGTTATTA 59.994 43.478 4.40 0.00 0.00 0.98
79 80 3.872511 TGTCGTGACGTGGGTTATTAT 57.127 42.857 4.40 0.00 0.00 1.28
80 81 4.191033 TGTCGTGACGTGGGTTATTATT 57.809 40.909 4.40 0.00 0.00 1.40
81 82 3.927758 TGTCGTGACGTGGGTTATTATTG 59.072 43.478 4.40 0.00 0.00 1.90
82 83 3.928375 GTCGTGACGTGGGTTATTATTGT 59.072 43.478 4.40 0.00 0.00 2.71
83 84 4.389687 GTCGTGACGTGGGTTATTATTGTT 59.610 41.667 4.40 0.00 0.00 2.83
84 85 4.626604 TCGTGACGTGGGTTATTATTGTTC 59.373 41.667 4.40 0.00 0.00 3.18
85 86 4.628333 CGTGACGTGGGTTATTATTGTTCT 59.372 41.667 0.00 0.00 0.00 3.01
86 87 5.445407 CGTGACGTGGGTTATTATTGTTCTG 60.445 44.000 0.00 0.00 0.00 3.02
87 88 4.938832 TGACGTGGGTTATTATTGTTCTGG 59.061 41.667 0.00 0.00 0.00 3.86
88 89 4.913784 ACGTGGGTTATTATTGTTCTGGT 58.086 39.130 0.00 0.00 0.00 4.00
89 90 4.939439 ACGTGGGTTATTATTGTTCTGGTC 59.061 41.667 0.00 0.00 0.00 4.02
90 91 4.033587 CGTGGGTTATTATTGTTCTGGTCG 59.966 45.833 0.00 0.00 0.00 4.79
91 92 4.334481 GTGGGTTATTATTGTTCTGGTCGG 59.666 45.833 0.00 0.00 0.00 4.79
92 93 4.225492 TGGGTTATTATTGTTCTGGTCGGA 59.775 41.667 0.00 0.00 0.00 4.55
93 94 4.573607 GGGTTATTATTGTTCTGGTCGGAC 59.426 45.833 0.00 0.00 0.00 4.79
94 95 4.269363 GGTTATTATTGTTCTGGTCGGACG 59.731 45.833 1.43 0.00 0.00 4.79
95 96 3.880047 ATTATTGTTCTGGTCGGACGA 57.120 42.857 1.43 0.00 0.00 4.20
96 97 3.880047 TTATTGTTCTGGTCGGACGAT 57.120 42.857 1.43 0.00 0.00 3.73
97 98 2.762535 ATTGTTCTGGTCGGACGATT 57.237 45.000 1.43 0.00 0.00 3.34
98 99 2.074547 TTGTTCTGGTCGGACGATTC 57.925 50.000 1.43 0.00 0.00 2.52
99 100 0.245539 TGTTCTGGTCGGACGATTCC 59.754 55.000 1.43 0.00 38.77 3.01
125 126 3.879682 CGGTGGCGATCGGACGTA 61.880 66.667 18.30 0.00 35.59 3.57
126 127 2.726274 GGTGGCGATCGGACGTAT 59.274 61.111 18.30 0.00 35.59 3.06
127 128 1.371389 GGTGGCGATCGGACGTATC 60.371 63.158 18.30 0.00 35.59 2.24
128 129 1.724929 GTGGCGATCGGACGTATCG 60.725 63.158 18.30 13.52 46.94 2.92
129 130 2.126965 GGCGATCGGACGTATCGG 60.127 66.667 18.30 0.00 44.92 4.18
130 131 2.610694 GGCGATCGGACGTATCGGA 61.611 63.158 18.30 4.44 44.92 4.55
131 132 1.440023 GCGATCGGACGTATCGGAC 60.440 63.158 18.30 8.80 44.92 4.79
140 141 2.051166 GTATCGGACGGCTCTCGC 60.051 66.667 0.00 0.00 43.89 5.03
141 142 3.646976 TATCGGACGGCTCTCGCG 61.647 66.667 0.00 0.00 43.89 5.87
157 158 3.168604 CGTGTGCGCTCGAGACAG 61.169 66.667 18.75 7.64 33.95 3.51
158 159 3.474034 GTGTGCGCTCGAGACAGC 61.474 66.667 18.75 17.85 35.90 4.40
159 160 4.724602 TGTGCGCTCGAGACAGCC 62.725 66.667 18.75 11.86 35.84 4.85
160 161 4.724602 GTGCGCTCGAGACAGCCA 62.725 66.667 18.75 6.35 35.84 4.75
161 162 3.763356 TGCGCTCGAGACAGCCAT 61.763 61.111 18.75 0.00 35.84 4.40
162 163 2.959071 GCGCTCGAGACAGCCATC 60.959 66.667 18.75 0.00 35.84 3.51
163 164 2.279120 CGCTCGAGACAGCCATCC 60.279 66.667 18.75 0.00 35.84 3.51
164 165 2.279120 GCTCGAGACAGCCATCCG 60.279 66.667 18.75 0.00 32.76 4.18
165 166 2.415010 CTCGAGACAGCCATCCGG 59.585 66.667 6.58 0.00 0.00 5.14
184 185 3.190849 GCAGCTGCGCGATTCAGA 61.191 61.111 25.23 0.00 33.54 3.27
185 186 2.743752 GCAGCTGCGCGATTCAGAA 61.744 57.895 25.23 0.00 33.54 3.02
186 187 2.012237 CAGCTGCGCGATTCAGAAT 58.988 52.632 12.10 0.00 33.54 2.40
187 188 0.376152 CAGCTGCGCGATTCAGAATT 59.624 50.000 12.10 0.00 33.54 2.17
188 189 0.654683 AGCTGCGCGATTCAGAATTC 59.345 50.000 12.10 0.00 33.54 2.17
189 190 0.374758 GCTGCGCGATTCAGAATTCA 59.625 50.000 12.10 0.00 33.54 2.57
190 191 1.202065 GCTGCGCGATTCAGAATTCAA 60.202 47.619 12.10 0.00 33.54 2.69
191 192 2.701807 CTGCGCGATTCAGAATTCAAG 58.298 47.619 12.10 0.00 33.54 3.02
192 193 2.345876 TGCGCGATTCAGAATTCAAGA 58.654 42.857 12.10 2.26 0.00 3.02
193 194 2.741517 TGCGCGATTCAGAATTCAAGAA 59.258 40.909 12.10 11.51 0.00 2.52
194 195 3.188254 TGCGCGATTCAGAATTCAAGAAA 59.812 39.130 12.10 1.99 0.00 2.52
195 196 4.142622 TGCGCGATTCAGAATTCAAGAAAT 60.143 37.500 12.10 6.05 0.00 2.17
196 197 5.064579 TGCGCGATTCAGAATTCAAGAAATA 59.935 36.000 12.10 0.00 0.00 1.40
197 198 5.965334 GCGCGATTCAGAATTCAAGAAATAA 59.035 36.000 12.10 0.00 0.00 1.40
198 199 6.139795 GCGCGATTCAGAATTCAAGAAATAAG 59.860 38.462 12.10 9.63 0.00 1.73
199 200 6.630443 CGCGATTCAGAATTCAAGAAATAAGG 59.370 38.462 14.70 6.49 0.00 2.69
200 201 7.475840 GCGATTCAGAATTCAAGAAATAAGGT 58.524 34.615 14.70 1.28 0.00 3.50
201 202 8.612619 GCGATTCAGAATTCAAGAAATAAGGTA 58.387 33.333 14.70 0.00 0.00 3.08
253 254 3.495670 CTCTACAGAGTGTACAGTGCC 57.504 52.381 8.23 0.00 37.40 5.01
254 255 1.810755 TCTACAGAGTGTACAGTGCCG 59.189 52.381 8.23 0.00 0.00 5.69
255 256 1.810755 CTACAGAGTGTACAGTGCCGA 59.189 52.381 8.23 0.00 0.00 5.54
256 257 0.314302 ACAGAGTGTACAGTGCCGAC 59.686 55.000 8.23 0.00 0.00 4.79
257 258 0.598562 CAGAGTGTACAGTGCCGACT 59.401 55.000 8.23 0.00 0.00 4.18
258 259 1.810755 CAGAGTGTACAGTGCCGACTA 59.189 52.381 8.23 0.00 0.00 2.59
259 260 2.423892 CAGAGTGTACAGTGCCGACTAT 59.576 50.000 8.23 0.00 0.00 2.12
260 261 3.626217 CAGAGTGTACAGTGCCGACTATA 59.374 47.826 8.23 0.00 0.00 1.31
261 262 3.878103 AGAGTGTACAGTGCCGACTATAG 59.122 47.826 8.23 0.00 0.00 1.31
262 263 3.618351 AGTGTACAGTGCCGACTATAGT 58.382 45.455 4.68 4.68 0.00 2.12
263 264 3.626670 AGTGTACAGTGCCGACTATAGTC 59.373 47.826 21.00 21.00 41.47 2.59
264 265 3.376234 GTGTACAGTGCCGACTATAGTCA 59.624 47.826 28.00 10.63 44.99 3.41
265 266 3.626217 TGTACAGTGCCGACTATAGTCAG 59.374 47.826 28.00 20.09 44.99 3.51
266 267 3.000684 ACAGTGCCGACTATAGTCAGA 57.999 47.619 28.00 11.49 44.99 3.27
267 268 3.556999 ACAGTGCCGACTATAGTCAGAT 58.443 45.455 28.00 9.72 44.99 2.90
268 269 3.954904 ACAGTGCCGACTATAGTCAGATT 59.045 43.478 28.00 10.03 44.99 2.40
269 270 5.131067 ACAGTGCCGACTATAGTCAGATTA 58.869 41.667 28.00 10.05 44.99 1.75
270 271 5.593095 ACAGTGCCGACTATAGTCAGATTAA 59.407 40.000 28.00 8.24 44.99 1.40
271 272 6.146216 CAGTGCCGACTATAGTCAGATTAAG 58.854 44.000 28.00 12.67 44.99 1.85
272 273 6.017026 CAGTGCCGACTATAGTCAGATTAAGA 60.017 42.308 28.00 4.48 44.99 2.10
273 274 6.016943 AGTGCCGACTATAGTCAGATTAAGAC 60.017 42.308 28.00 14.08 44.99 3.01
274 275 5.826208 TGCCGACTATAGTCAGATTAAGACA 59.174 40.000 28.00 9.49 44.99 3.41
275 276 6.320418 TGCCGACTATAGTCAGATTAAGACAA 59.680 38.462 28.00 2.20 44.99 3.18
276 277 7.147966 TGCCGACTATAGTCAGATTAAGACAAA 60.148 37.037 28.00 1.02 44.99 2.83
277 278 7.705325 GCCGACTATAGTCAGATTAAGACAAAA 59.295 37.037 28.00 0.00 44.99 2.44
278 279 9.239002 CCGACTATAGTCAGATTAAGACAAAAG 57.761 37.037 28.00 9.28 44.99 2.27
296 297 9.554395 AGACAAAAGAAAAAGAAAACAAAAGGA 57.446 25.926 0.00 0.00 0.00 3.36
298 299 9.944663 ACAAAAGAAAAAGAAAACAAAAGGAAC 57.055 25.926 0.00 0.00 0.00 3.62
299 300 9.943163 CAAAAGAAAAAGAAAACAAAAGGAACA 57.057 25.926 0.00 0.00 0.00 3.18
301 302 9.554395 AAAGAAAAAGAAAACAAAAGGAACAGA 57.446 25.926 0.00 0.00 0.00 3.41
302 303 8.534333 AGAAAAAGAAAACAAAAGGAACAGAC 57.466 30.769 0.00 0.00 0.00 3.51
303 304 8.147704 AGAAAAAGAAAACAAAAGGAACAGACA 58.852 29.630 0.00 0.00 0.00 3.41
304 305 7.652300 AAAAGAAAACAAAAGGAACAGACAC 57.348 32.000 0.00 0.00 0.00 3.67
305 306 6.590234 AAGAAAACAAAAGGAACAGACACT 57.410 33.333 0.00 0.00 0.00 3.55
306 307 6.196079 AGAAAACAAAAGGAACAGACACTC 57.804 37.500 0.00 0.00 0.00 3.51
307 308 4.983671 AAACAAAAGGAACAGACACTCC 57.016 40.909 0.00 0.00 0.00 3.85
308 309 3.644966 ACAAAAGGAACAGACACTCCA 57.355 42.857 0.00 0.00 33.83 3.86
309 310 3.963129 ACAAAAGGAACAGACACTCCAA 58.037 40.909 0.00 0.00 33.83 3.53
310 311 4.536765 ACAAAAGGAACAGACACTCCAAT 58.463 39.130 0.00 0.00 33.83 3.16
311 312 4.956075 ACAAAAGGAACAGACACTCCAATT 59.044 37.500 0.00 0.00 33.83 2.32
312 313 6.126409 ACAAAAGGAACAGACACTCCAATTA 58.874 36.000 0.00 0.00 33.83 1.40
313 314 6.263168 ACAAAAGGAACAGACACTCCAATTAG 59.737 38.462 0.00 0.00 33.83 1.73
314 315 5.568620 AAGGAACAGACACTCCAATTAGT 57.431 39.130 0.00 0.00 33.83 2.24
315 316 5.568620 AGGAACAGACACTCCAATTAGTT 57.431 39.130 0.00 0.00 33.83 2.24
316 317 5.308825 AGGAACAGACACTCCAATTAGTTG 58.691 41.667 0.00 0.00 33.83 3.16
317 318 5.071788 AGGAACAGACACTCCAATTAGTTGA 59.928 40.000 0.00 0.00 37.53 3.18
318 319 5.763204 GGAACAGACACTCCAATTAGTTGAA 59.237 40.000 0.00 0.00 37.53 2.69
319 320 6.073003 GGAACAGACACTCCAATTAGTTGAAG 60.073 42.308 0.00 0.00 37.53 3.02
320 321 4.757149 ACAGACACTCCAATTAGTTGAAGC 59.243 41.667 0.00 0.00 37.53 3.86
321 322 4.999950 CAGACACTCCAATTAGTTGAAGCT 59.000 41.667 0.00 0.00 37.53 3.74
322 323 6.166279 CAGACACTCCAATTAGTTGAAGCTA 58.834 40.000 0.00 0.00 37.53 3.32
323 324 6.312426 CAGACACTCCAATTAGTTGAAGCTAG 59.688 42.308 0.00 0.00 37.53 3.42
324 325 4.938226 ACACTCCAATTAGTTGAAGCTAGC 59.062 41.667 6.62 6.62 37.53 3.42
325 326 5.181748 CACTCCAATTAGTTGAAGCTAGCT 58.818 41.667 12.68 12.68 37.53 3.32
326 327 5.064452 CACTCCAATTAGTTGAAGCTAGCTG 59.936 44.000 20.16 2.51 37.53 4.24
327 328 3.941483 TCCAATTAGTTGAAGCTAGCTGC 59.059 43.478 20.16 18.29 37.53 5.25
328 329 3.691118 CCAATTAGTTGAAGCTAGCTGCA 59.309 43.478 22.23 22.23 39.95 4.41
329 330 4.337555 CCAATTAGTTGAAGCTAGCTGCAT 59.662 41.667 26.32 14.84 39.95 3.96
330 331 5.505324 CCAATTAGTTGAAGCTAGCTGCATC 60.505 44.000 26.32 23.82 39.95 3.91
331 332 2.775911 AGTTGAAGCTAGCTGCATCA 57.224 45.000 28.11 21.06 46.01 3.07
332 333 3.278668 AGTTGAAGCTAGCTGCATCAT 57.721 42.857 28.11 15.33 46.72 2.45
333 334 3.204526 AGTTGAAGCTAGCTGCATCATC 58.795 45.455 28.11 21.01 46.72 2.92
334 335 3.118334 AGTTGAAGCTAGCTGCATCATCT 60.118 43.478 28.11 22.47 46.72 2.90
335 336 4.100653 AGTTGAAGCTAGCTGCATCATCTA 59.899 41.667 28.11 11.68 46.72 1.98
336 337 3.987547 TGAAGCTAGCTGCATCATCTAC 58.012 45.455 22.23 2.75 43.35 2.59
337 338 3.244009 TGAAGCTAGCTGCATCATCTACC 60.244 47.826 22.23 0.00 43.35 3.18
338 339 2.607499 AGCTAGCTGCATCATCTACCT 58.393 47.619 18.57 0.00 45.94 3.08
339 340 2.971330 AGCTAGCTGCATCATCTACCTT 59.029 45.455 18.57 0.00 45.94 3.50
340 341 3.065655 GCTAGCTGCATCATCTACCTTG 58.934 50.000 7.70 0.00 42.31 3.61
341 342 3.244009 GCTAGCTGCATCATCTACCTTGA 60.244 47.826 7.70 0.00 42.31 3.02
342 343 3.472283 AGCTGCATCATCTACCTTGAG 57.528 47.619 1.02 0.00 0.00 3.02
343 344 2.104451 AGCTGCATCATCTACCTTGAGG 59.896 50.000 1.02 0.00 42.17 3.86
344 345 2.809665 GCTGCATCATCTACCTTGAGGG 60.810 54.545 1.54 0.00 40.27 4.30
345 346 2.702478 CTGCATCATCTACCTTGAGGGA 59.298 50.000 1.54 0.00 40.27 4.20
347 348 2.549778 GCATCATCTACCTTGAGGGAGC 60.550 54.545 4.26 0.00 46.09 4.70
348 349 1.794714 TCATCTACCTTGAGGGAGCC 58.205 55.000 4.26 0.00 46.09 4.70
349 350 0.761802 CATCTACCTTGAGGGAGCCC 59.238 60.000 4.26 0.00 46.09 5.19
350 351 0.343372 ATCTACCTTGAGGGAGCCCA 59.657 55.000 8.53 0.00 46.09 5.36
351 352 0.617820 TCTACCTTGAGGGAGCCCAC 60.618 60.000 8.53 1.72 46.09 4.61
352 353 1.961180 CTACCTTGAGGGAGCCCACG 61.961 65.000 8.53 0.00 39.74 4.94
353 354 4.101448 CCTTGAGGGAGCCCACGG 62.101 72.222 8.53 0.00 38.92 4.94
363 364 4.564110 GCCCACGGCCTATGGACC 62.564 72.222 21.59 10.15 44.06 4.46
364 365 2.768344 CCCACGGCCTATGGACCT 60.768 66.667 21.59 0.00 39.87 3.85
365 366 2.505982 CCACGGCCTATGGACCTG 59.494 66.667 16.23 0.00 39.87 4.00
366 367 2.203070 CACGGCCTATGGACCTGC 60.203 66.667 0.00 0.00 0.00 4.85
367 368 3.849951 ACGGCCTATGGACCTGCG 61.850 66.667 0.00 0.00 0.00 5.18
370 371 4.530857 GCCTATGGACCTGCGCGT 62.531 66.667 8.43 0.00 0.00 6.01
371 372 2.586079 CCTATGGACCTGCGCGTG 60.586 66.667 8.43 0.36 0.00 5.34
372 373 2.586079 CTATGGACCTGCGCGTGG 60.586 66.667 16.28 16.28 0.00 4.94
373 374 3.371097 CTATGGACCTGCGCGTGGT 62.371 63.158 22.21 22.21 41.07 4.16
383 384 3.186047 CGCGTGGTCCGTTGGATC 61.186 66.667 0.00 0.00 39.32 3.36
384 385 2.047655 GCGTGGTCCGTTGGATCA 60.048 61.111 0.00 0.00 40.99 2.92
385 386 1.669760 GCGTGGTCCGTTGGATCAA 60.670 57.895 0.00 0.00 45.16 2.57
386 387 1.635663 GCGTGGTCCGTTGGATCAAG 61.636 60.000 7.55 7.55 45.16 3.02
387 388 0.320421 CGTGGTCCGTTGGATCAAGT 60.320 55.000 0.00 0.00 45.16 3.16
388 389 1.439679 GTGGTCCGTTGGATCAAGTC 58.560 55.000 0.00 0.00 45.16 3.01
389 390 1.052617 TGGTCCGTTGGATCAAGTCA 58.947 50.000 0.00 0.00 40.22 3.41
390 391 1.001974 TGGTCCGTTGGATCAAGTCAG 59.998 52.381 0.00 0.00 40.22 3.51
391 392 1.275291 GGTCCGTTGGATCAAGTCAGA 59.725 52.381 0.00 0.00 32.11 3.27
392 393 2.093447 GGTCCGTTGGATCAAGTCAGAT 60.093 50.000 0.00 0.00 32.11 2.90
393 394 3.190874 GTCCGTTGGATCAAGTCAGATC 58.809 50.000 0.00 0.00 42.89 2.75
394 395 3.099905 TCCGTTGGATCAAGTCAGATCT 58.900 45.455 0.00 0.00 43.11 2.75
395 396 4.098044 GTCCGTTGGATCAAGTCAGATCTA 59.902 45.833 0.00 0.00 43.11 1.98
396 397 4.709886 TCCGTTGGATCAAGTCAGATCTAA 59.290 41.667 0.00 0.00 43.11 2.10
399 400 5.914898 TTGGATCAAGTCAGATCTAACGA 57.085 39.130 0.00 0.00 43.11 3.85
400 401 5.250235 TGGATCAAGTCAGATCTAACGAC 57.750 43.478 0.00 0.00 43.11 4.34
401 402 4.705023 TGGATCAAGTCAGATCTAACGACA 59.295 41.667 12.69 0.00 43.11 4.35
402 403 5.163612 TGGATCAAGTCAGATCTAACGACAG 60.164 44.000 12.69 6.26 43.11 3.51
403 404 4.703645 TCAAGTCAGATCTAACGACAGG 57.296 45.455 12.69 5.69 31.92 4.00
404 405 3.119459 TCAAGTCAGATCTAACGACAGGC 60.119 47.826 12.69 0.00 31.92 4.85
406 407 0.100682 TCAGATCTAACGACAGGCGC 59.899 55.000 0.00 0.00 46.04 6.53
407 408 1.064296 AGATCTAACGACAGGCGCG 59.936 57.895 0.00 0.00 46.04 6.86
408 409 2.577785 GATCTAACGACAGGCGCGC 61.578 63.158 25.94 25.94 46.04 6.86
409 410 3.350909 ATCTAACGACAGGCGCGCA 62.351 57.895 34.42 8.36 46.04 6.09
410 411 2.629050 ATCTAACGACAGGCGCGCAT 62.629 55.000 34.42 26.01 46.04 4.73
411 412 2.860628 CTAACGACAGGCGCGCATC 61.861 63.158 34.42 24.31 46.04 3.91
422 423 3.127533 GCGCATCCGGCAGAAGTT 61.128 61.111 0.30 0.00 45.17 2.66
423 424 3.093278 CGCATCCGGCAGAAGTTC 58.907 61.111 0.00 0.00 45.17 3.01
424 425 2.464459 CGCATCCGGCAGAAGTTCC 61.464 63.158 0.00 0.00 45.17 3.62
425 426 1.377202 GCATCCGGCAGAAGTTCCA 60.377 57.895 0.00 0.00 43.97 3.53
426 427 1.372087 GCATCCGGCAGAAGTTCCAG 61.372 60.000 0.00 0.00 43.97 3.86
427 428 0.036010 CATCCGGCAGAAGTTCCAGT 60.036 55.000 0.00 0.00 0.00 4.00
428 429 0.250513 ATCCGGCAGAAGTTCCAGTC 59.749 55.000 0.00 0.00 0.00 3.51
429 430 1.738099 CCGGCAGAAGTTCCAGTCG 60.738 63.158 11.66 11.66 0.00 4.18
430 431 1.738099 CGGCAGAAGTTCCAGTCGG 60.738 63.158 10.97 0.00 0.00 4.79
431 432 2.035442 GGCAGAAGTTCCAGTCGGC 61.035 63.158 0.00 0.00 34.65 5.54
432 433 2.035442 GCAGAAGTTCCAGTCGGCC 61.035 63.158 0.00 0.00 0.00 6.13
433 434 1.371183 CAGAAGTTCCAGTCGGCCA 59.629 57.895 2.24 0.00 0.00 5.36
434 435 0.671781 CAGAAGTTCCAGTCGGCCAG 60.672 60.000 2.24 0.00 0.00 4.85
435 436 2.032681 AAGTTCCAGTCGGCCAGC 59.967 61.111 2.24 0.00 0.00 4.85
436 437 3.553095 AAGTTCCAGTCGGCCAGCC 62.553 63.158 2.24 0.00 0.00 4.85
450 451 4.941309 AGCCGGCGGGAAACGTTT 62.941 61.111 29.48 14.57 46.52 3.60
451 452 3.049074 GCCGGCGGGAAACGTTTA 61.049 61.111 29.48 0.00 46.52 2.01
452 453 2.400962 GCCGGCGGGAAACGTTTAT 61.401 57.895 29.48 0.00 46.52 1.40
453 454 1.088910 GCCGGCGGGAAACGTTTATA 61.089 55.000 29.48 0.00 46.52 0.98
454 455 0.652071 CCGGCGGGAAACGTTTATAC 59.348 55.000 20.56 7.38 46.52 1.47
455 456 1.357907 CGGCGGGAAACGTTTATACA 58.642 50.000 14.65 0.00 46.52 2.29
456 457 1.325338 CGGCGGGAAACGTTTATACAG 59.675 52.381 14.65 9.24 46.52 2.74
457 458 2.349590 GGCGGGAAACGTTTATACAGT 58.650 47.619 14.65 0.00 46.52 3.55
458 459 3.520569 GGCGGGAAACGTTTATACAGTA 58.479 45.455 14.65 0.00 46.52 2.74
459 460 3.553105 GGCGGGAAACGTTTATACAGTAG 59.447 47.826 14.65 1.47 46.52 2.57
460 461 4.176271 GCGGGAAACGTTTATACAGTAGT 58.824 43.478 14.65 0.00 46.52 2.73
461 462 5.339990 GCGGGAAACGTTTATACAGTAGTA 58.660 41.667 14.65 0.00 46.52 1.82
462 463 5.456822 GCGGGAAACGTTTATACAGTAGTAG 59.543 44.000 14.65 0.00 46.52 2.57
463 464 6.555315 CGGGAAACGTTTATACAGTAGTAGT 58.445 40.000 14.65 0.00 37.93 2.73
464 465 7.678690 GCGGGAAACGTTTATACAGTAGTAGTA 60.679 40.741 14.65 0.00 46.52 1.82
465 466 8.345565 CGGGAAACGTTTATACAGTAGTAGTAT 58.654 37.037 14.65 0.00 37.93 2.12
466 467 9.455847 GGGAAACGTTTATACAGTAGTAGTATG 57.544 37.037 14.65 0.00 34.28 2.39
533 542 0.796927 GGGCGTTCCTCTTTTCTTCG 59.203 55.000 0.00 0.00 0.00 3.79
535 544 1.459975 GGCGTTCCTCTTTTCTTCGTC 59.540 52.381 0.00 0.00 0.00 4.20
619 630 2.202703 GCACCGTAGCCAGGTACG 60.203 66.667 19.53 19.53 44.42 3.67
649 660 4.150454 CCCGCTCTCCCTCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
650 661 2.520741 CCGCTCTCCCTCTCCCTC 60.521 72.222 0.00 0.00 0.00 4.30
651 662 2.600731 CGCTCTCCCTCTCCCTCT 59.399 66.667 0.00 0.00 0.00 3.69
652 663 1.528309 CGCTCTCCCTCTCCCTCTC 60.528 68.421 0.00 0.00 0.00 3.20
654 665 0.032615 GCTCTCCCTCTCCCTCTCAA 60.033 60.000 0.00 0.00 0.00 3.02
655 666 1.775385 CTCTCCCTCTCCCTCTCAAC 58.225 60.000 0.00 0.00 0.00 3.18
656 667 0.033991 TCTCCCTCTCCCTCTCAACG 60.034 60.000 0.00 0.00 0.00 4.10
657 668 0.033991 CTCCCTCTCCCTCTCAACGA 60.034 60.000 0.00 0.00 0.00 3.85
658 669 0.323542 TCCCTCTCCCTCTCAACGAC 60.324 60.000 0.00 0.00 0.00 4.34
659 670 0.323908 CCCTCTCCCTCTCAACGACT 60.324 60.000 0.00 0.00 0.00 4.18
660 671 1.099689 CCTCTCCCTCTCAACGACTC 58.900 60.000 0.00 0.00 0.00 3.36
661 672 1.614583 CCTCTCCCTCTCAACGACTCA 60.615 57.143 0.00 0.00 0.00 3.41
662 673 1.742831 CTCTCCCTCTCAACGACTCAG 59.257 57.143 0.00 0.00 0.00 3.35
700 711 2.279784 GCAGCTAGCTACGCCAGG 60.280 66.667 18.86 4.09 41.15 4.45
783 794 4.377760 TCCGGTCGCCTCCTCCTT 62.378 66.667 0.00 0.00 0.00 3.36
831 848 3.859414 GCCGCTGCTCCTGGATCT 61.859 66.667 0.00 0.00 33.53 2.75
834 851 2.429767 CGCTGCTCCTGGATCTGGA 61.430 63.158 0.00 7.56 0.00 3.86
842 859 1.118838 CCTGGATCTGGACTCTCCAC 58.881 60.000 0.00 0.00 42.67 4.02
845 862 1.439644 GATCTGGACTCTCCACGCC 59.560 63.158 0.00 0.00 42.67 5.68
848 865 2.203640 TGGACTCTCCACGCCAGT 60.204 61.111 0.00 0.00 42.67 4.00
890 908 2.414161 GCCCATACAAACAAGAACGCTC 60.414 50.000 0.00 0.00 0.00 5.03
906 924 2.680352 TCTCGTCCCCCTGTCAGC 60.680 66.667 0.00 0.00 0.00 4.26
1044 1074 4.459089 GACTGGGCTGGTCTCGGC 62.459 72.222 3.84 0.00 44.31 5.54
1284 1314 2.045926 GGCGAGTGCATCCAGGTT 60.046 61.111 0.00 0.00 45.35 3.50
1302 1332 2.765807 CACCTCCCGGAGCTCCAT 60.766 66.667 31.67 7.16 35.14 3.41
1338 1368 2.279073 CTCACCTCCGAGGGCCTA 59.721 66.667 18.99 0.00 40.58 3.93
1467 1497 1.004918 CGACGGCCTCCTTTTCACT 60.005 57.895 0.00 0.00 0.00 3.41
1470 1500 1.302832 CGGCCTCCTTTTCACTGCT 60.303 57.895 0.00 0.00 0.00 4.24
1557 1587 3.582647 TCTCCTTCAACAGGCTCAACATA 59.417 43.478 0.00 0.00 43.55 2.29
1668 1698 0.541392 TCTACTGCGCCACCATTGAT 59.459 50.000 4.18 0.00 0.00 2.57
1765 1795 1.005037 GACACCGTGCACCTGATGA 60.005 57.895 12.15 0.00 0.00 2.92
1783 1813 2.441822 GAACAGTGCCGGAGAGCTGT 62.442 60.000 5.05 10.26 43.13 4.40
1784 1814 2.044806 AACAGTGCCGGAGAGCTGTT 62.045 55.000 20.08 20.08 44.36 3.16
1836 1866 4.250116 TGACAACAATAACATGGCCAAC 57.750 40.909 10.96 0.00 0.00 3.77
1891 1921 2.027625 GGGACTTTGTGCCGAGTCG 61.028 63.158 5.29 5.29 42.46 4.18
1986 2016 2.122768 CCTTCTGGCTCCATTAGAGGT 58.877 52.381 0.00 0.00 43.46 3.85
1991 2021 1.833630 TGGCTCCATTAGAGGTGACAG 59.166 52.381 0.00 0.00 43.46 3.51
1993 2023 1.208052 GCTCCATTAGAGGTGACAGCA 59.792 52.381 7.50 0.00 43.46 4.41
2059 2089 1.072806 ACCATCTTGCAGACAGAAGCA 59.927 47.619 0.00 0.00 39.32 3.91
2076 2106 1.414181 AGCACCATTAGCAGCGATAGT 59.586 47.619 0.00 0.00 39.35 2.12
2163 2193 1.468224 CGGATCTGGTGTCACTTCGAG 60.468 57.143 2.35 0.00 0.00 4.04
2194 2224 4.921547 TGTCAGTCATTGTAGACGATAGC 58.078 43.478 0.00 0.00 43.24 2.97
2212 2242 5.618798 CGATAGCGCTCATCTTTTTCATTTC 59.381 40.000 16.34 0.00 0.00 2.17
2220 2254 4.221262 TCATCTTTTTCATTTCTGGCAGGG 59.779 41.667 15.73 2.41 0.00 4.45
2234 2268 2.116125 AGGGCACTGGGAAGCAAC 59.884 61.111 0.00 0.00 0.00 4.17
2271 2313 6.463360 ACAATCCGTGGCTTTGATTAAAAAT 58.537 32.000 7.97 0.00 0.00 1.82
2276 2318 8.888579 TCCGTGGCTTTGATTAAAAATAAAAA 57.111 26.923 0.00 0.00 0.00 1.94
2279 2321 8.270111 CGTGGCTTTGATTAAAAATAAAAACGT 58.730 29.630 0.00 0.00 0.00 3.99
2303 2345 2.560981 TGATACTCTGTGGCTTCGAACA 59.439 45.455 0.00 0.00 0.00 3.18
2305 2347 2.325583 ACTCTGTGGCTTCGAACAAA 57.674 45.000 0.00 0.00 0.00 2.83
2306 2348 2.639065 ACTCTGTGGCTTCGAACAAAA 58.361 42.857 0.00 0.00 0.00 2.44
2311 2371 2.034053 TGTGGCTTCGAACAAAATGGTC 59.966 45.455 0.00 0.00 0.00 4.02
2465 2530 9.988815 CATTGTTTGTCCTCTAAGCTATATACT 57.011 33.333 0.00 0.00 0.00 2.12
2466 2531 9.988815 ATTGTTTGTCCTCTAAGCTATATACTG 57.011 33.333 0.00 0.00 0.00 2.74
2467 2532 8.534954 TGTTTGTCCTCTAAGCTATATACTGT 57.465 34.615 0.00 0.00 0.00 3.55
2468 2533 9.636789 TGTTTGTCCTCTAAGCTATATACTGTA 57.363 33.333 0.00 0.00 0.00 2.74
2469 2534 9.896263 GTTTGTCCTCTAAGCTATATACTGTAC 57.104 37.037 0.00 0.00 0.00 2.90
2514 2579 9.255029 CCAAATTAGATTTTTAGAGGAAAGGGA 57.745 33.333 0.00 0.00 0.00 4.20
2537 2602 5.501156 AGAAAAAGCCGATCCTAACTGATT 58.499 37.500 0.00 0.00 0.00 2.57
2539 2604 4.487714 AAAGCCGATCCTAACTGATTCA 57.512 40.909 0.00 0.00 0.00 2.57
2546 2611 4.500837 CGATCCTAACTGATTCACGTCTTG 59.499 45.833 0.00 0.00 0.00 3.02
2553 2618 6.391227 AACTGATTCACGTCTTGGAAAAAT 57.609 33.333 0.00 0.00 0.00 1.82
2706 2774 2.235016 CGTCTGTTTCACCACGCGT 61.235 57.895 5.58 5.58 0.00 6.01
2830 2902 2.990284 TCCTCTCCCACACCCAAAATTA 59.010 45.455 0.00 0.00 0.00 1.40
2842 2914 7.364232 CCACACCCAAAATTATTAGTTGCCATA 60.364 37.037 0.00 0.00 0.00 2.74
2913 2991 2.994578 GCAACTCTCTTTTACCCGAGTC 59.005 50.000 0.00 0.00 35.82 3.36
2916 2994 1.201647 CTCTCTTTTACCCGAGTCGCA 59.798 52.381 7.12 0.00 0.00 5.10
2948 3026 1.003580 CAGGGTACATGACAACTGCCT 59.996 52.381 0.00 0.00 30.77 4.75
3105 3188 6.907961 ACTGTAGTAGACCAGACCATACATA 58.092 40.000 0.00 0.00 32.93 2.29
3148 3232 0.615331 ATGGCATCCGACACTTGACT 59.385 50.000 0.00 0.00 27.59 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.105697 AGGTGGGGATTCAGTTTGAACTTA 59.894 41.667 0.00 0.00 39.45 2.24
1 2 3.117131 AGGTGGGGATTCAGTTTGAACTT 60.117 43.478 0.00 0.00 39.45 2.66
2 3 2.447047 AGGTGGGGATTCAGTTTGAACT 59.553 45.455 0.00 0.00 39.45 3.01
3 4 2.820197 GAGGTGGGGATTCAGTTTGAAC 59.180 50.000 0.00 0.00 39.45 3.18
4 5 2.445145 TGAGGTGGGGATTCAGTTTGAA 59.555 45.455 0.00 0.00 41.09 2.69
5 6 2.061848 TGAGGTGGGGATTCAGTTTGA 58.938 47.619 0.00 0.00 0.00 2.69
6 7 2.584835 TGAGGTGGGGATTCAGTTTG 57.415 50.000 0.00 0.00 0.00 2.93
7 8 2.885554 GCATGAGGTGGGGATTCAGTTT 60.886 50.000 0.00 0.00 0.00 2.66
8 9 1.341383 GCATGAGGTGGGGATTCAGTT 60.341 52.381 0.00 0.00 0.00 3.16
9 10 0.257039 GCATGAGGTGGGGATTCAGT 59.743 55.000 0.00 0.00 0.00 3.41
10 11 0.256752 TGCATGAGGTGGGGATTCAG 59.743 55.000 0.00 0.00 0.00 3.02
11 12 0.928505 ATGCATGAGGTGGGGATTCA 59.071 50.000 0.00 0.00 0.00 2.57
12 13 1.684983 CAATGCATGAGGTGGGGATTC 59.315 52.381 0.00 0.00 0.00 2.52
13 14 1.007479 ACAATGCATGAGGTGGGGATT 59.993 47.619 0.00 0.00 0.00 3.01
14 15 0.632835 ACAATGCATGAGGTGGGGAT 59.367 50.000 0.00 0.00 0.00 3.85
15 16 0.034186 GACAATGCATGAGGTGGGGA 60.034 55.000 0.00 0.00 0.00 4.81
16 17 1.039233 GGACAATGCATGAGGTGGGG 61.039 60.000 0.00 0.00 0.00 4.96
17 18 1.039233 GGGACAATGCATGAGGTGGG 61.039 60.000 0.00 0.00 0.00 4.61
18 19 0.323633 TGGGACAATGCATGAGGTGG 60.324 55.000 0.00 0.00 31.92 4.61
19 20 0.813184 GTGGGACAATGCATGAGGTG 59.187 55.000 0.00 0.00 44.16 4.00
20 21 0.677731 CGTGGGACAATGCATGAGGT 60.678 55.000 0.00 0.00 44.16 3.85
21 22 0.677731 ACGTGGGACAATGCATGAGG 60.678 55.000 0.00 0.00 44.16 3.86
22 23 0.448990 CACGTGGGACAATGCATGAG 59.551 55.000 7.95 0.00 44.16 2.90
23 24 0.959867 CCACGTGGGACAATGCATGA 60.960 55.000 27.57 0.00 44.16 3.07
24 25 1.507630 CCACGTGGGACAATGCATG 59.492 57.895 27.57 0.00 44.16 4.06
25 26 4.001248 CCACGTGGGACAATGCAT 57.999 55.556 27.57 0.00 44.16 3.96
47 48 1.648720 CACGACAAGTGCAAGGGTG 59.351 57.895 0.00 0.00 44.72 4.61
48 49 4.141144 CACGACAAGTGCAAGGGT 57.859 55.556 0.00 0.00 44.72 4.34
56 57 0.746063 TAACCCACGTCACGACAAGT 59.254 50.000 2.91 0.00 0.00 3.16
57 58 2.074547 ATAACCCACGTCACGACAAG 57.925 50.000 2.91 0.00 0.00 3.16
58 59 2.529780 AATAACCCACGTCACGACAA 57.470 45.000 2.91 0.00 0.00 3.18
59 60 3.872511 ATAATAACCCACGTCACGACA 57.127 42.857 2.91 0.00 0.00 4.35
60 61 3.928375 ACAATAATAACCCACGTCACGAC 59.072 43.478 2.91 0.00 0.00 4.34
61 62 4.191033 ACAATAATAACCCACGTCACGA 57.809 40.909 2.91 0.00 0.00 4.35
62 63 4.628333 AGAACAATAATAACCCACGTCACG 59.372 41.667 0.00 0.00 0.00 4.35
63 64 5.163794 CCAGAACAATAATAACCCACGTCAC 60.164 44.000 0.00 0.00 0.00 3.67
64 65 4.938832 CCAGAACAATAATAACCCACGTCA 59.061 41.667 0.00 0.00 0.00 4.35
65 66 4.939439 ACCAGAACAATAATAACCCACGTC 59.061 41.667 0.00 0.00 0.00 4.34
66 67 4.913784 ACCAGAACAATAATAACCCACGT 58.086 39.130 0.00 0.00 0.00 4.49
67 68 4.033587 CGACCAGAACAATAATAACCCACG 59.966 45.833 0.00 0.00 0.00 4.94
68 69 4.334481 CCGACCAGAACAATAATAACCCAC 59.666 45.833 0.00 0.00 0.00 4.61
69 70 4.225492 TCCGACCAGAACAATAATAACCCA 59.775 41.667 0.00 0.00 0.00 4.51
70 71 4.573607 GTCCGACCAGAACAATAATAACCC 59.426 45.833 0.00 0.00 0.00 4.11
71 72 4.269363 CGTCCGACCAGAACAATAATAACC 59.731 45.833 0.00 0.00 0.00 2.85
72 73 5.104374 TCGTCCGACCAGAACAATAATAAC 58.896 41.667 0.00 0.00 0.00 1.89
73 74 5.327616 TCGTCCGACCAGAACAATAATAA 57.672 39.130 0.00 0.00 0.00 1.40
74 75 4.987408 TCGTCCGACCAGAACAATAATA 57.013 40.909 0.00 0.00 0.00 0.98
75 76 3.880047 TCGTCCGACCAGAACAATAAT 57.120 42.857 0.00 0.00 0.00 1.28
76 77 3.880047 ATCGTCCGACCAGAACAATAA 57.120 42.857 0.00 0.00 0.00 1.40
77 78 3.429822 GGAATCGTCCGACCAGAACAATA 60.430 47.826 0.00 0.00 33.05 1.90
78 79 2.618053 GAATCGTCCGACCAGAACAAT 58.382 47.619 0.00 0.00 0.00 2.71
79 80 1.337447 GGAATCGTCCGACCAGAACAA 60.337 52.381 0.00 0.00 33.05 2.83
80 81 0.245539 GGAATCGTCCGACCAGAACA 59.754 55.000 0.00 0.00 33.05 3.18
81 82 3.046280 GGAATCGTCCGACCAGAAC 57.954 57.895 0.00 0.00 33.05 3.01
108 109 3.190323 ATACGTCCGATCGCCACCG 62.190 63.158 10.32 10.64 0.00 4.94
109 110 1.371389 GATACGTCCGATCGCCACC 60.371 63.158 10.32 0.00 0.00 4.61
110 111 1.724929 CGATACGTCCGATCGCCAC 60.725 63.158 10.32 7.48 39.71 5.01
111 112 2.635338 CGATACGTCCGATCGCCA 59.365 61.111 10.32 0.00 39.71 5.69
112 113 2.126965 CCGATACGTCCGATCGCC 60.127 66.667 10.32 0.86 43.83 5.54
113 114 1.440023 GTCCGATACGTCCGATCGC 60.440 63.158 10.32 0.00 43.83 4.58
114 115 1.154709 CGTCCGATACGTCCGATCG 60.155 63.158 8.51 8.51 46.72 3.69
115 116 4.814342 CGTCCGATACGTCCGATC 57.186 61.111 11.21 0.00 46.72 3.69
140 141 3.168604 CTGTCTCGAGCGCACACG 61.169 66.667 11.47 12.84 44.07 4.49
141 142 3.474034 GCTGTCTCGAGCGCACAC 61.474 66.667 11.47 0.31 0.00 3.82
142 143 4.724602 GGCTGTCTCGAGCGCACA 62.725 66.667 11.47 6.41 40.13 4.57
143 144 3.997064 ATGGCTGTCTCGAGCGCAC 62.997 63.158 11.47 0.96 40.13 5.34
144 145 3.706563 GATGGCTGTCTCGAGCGCA 62.707 63.158 11.47 8.40 40.13 6.09
145 146 2.959071 GATGGCTGTCTCGAGCGC 60.959 66.667 7.81 9.95 40.13 5.92
146 147 2.279120 GGATGGCTGTCTCGAGCG 60.279 66.667 7.81 0.00 40.13 5.03
147 148 2.279120 CGGATGGCTGTCTCGAGC 60.279 66.667 7.81 3.58 38.34 5.03
148 149 2.415010 CCGGATGGCTGTCTCGAG 59.585 66.667 5.93 5.93 0.00 4.04
171 172 2.349580 TCTTGAATTCTGAATCGCGCAG 59.650 45.455 8.75 3.06 34.71 5.18
172 173 2.345876 TCTTGAATTCTGAATCGCGCA 58.654 42.857 8.75 0.00 0.00 6.09
173 174 3.389687 TTCTTGAATTCTGAATCGCGC 57.610 42.857 0.00 0.00 0.00 6.86
174 175 6.630443 CCTTATTTCTTGAATTCTGAATCGCG 59.370 38.462 7.05 0.00 0.00 5.87
175 176 7.475840 ACCTTATTTCTTGAATTCTGAATCGC 58.524 34.615 7.05 0.23 0.00 4.58
233 234 2.159503 CGGCACTGTACACTCTGTAGAG 60.160 54.545 7.34 7.34 46.15 2.43
234 235 1.810755 CGGCACTGTACACTCTGTAGA 59.189 52.381 0.00 0.00 32.84 2.59
235 236 1.810755 TCGGCACTGTACACTCTGTAG 59.189 52.381 0.00 0.00 32.84 2.74
236 237 1.538512 GTCGGCACTGTACACTCTGTA 59.461 52.381 0.00 0.00 0.00 2.74
237 238 0.314302 GTCGGCACTGTACACTCTGT 59.686 55.000 0.00 0.00 0.00 3.41
238 239 0.598562 AGTCGGCACTGTACACTCTG 59.401 55.000 0.00 0.00 0.00 3.35
239 240 2.195741 TAGTCGGCACTGTACACTCT 57.804 50.000 0.00 0.00 33.62 3.24
240 241 3.626670 ACTATAGTCGGCACTGTACACTC 59.373 47.826 0.00 0.00 33.62 3.51
241 242 3.618351 ACTATAGTCGGCACTGTACACT 58.382 45.455 0.00 0.00 33.62 3.55
242 243 3.950078 GACTATAGTCGGCACTGTACAC 58.050 50.000 16.87 0.00 35.12 2.90
270 271 9.554395 TCCTTTTGTTTTCTTTTTCTTTTGTCT 57.446 25.926 0.00 0.00 0.00 3.41
272 273 9.944663 GTTCCTTTTGTTTTCTTTTTCTTTTGT 57.055 25.926 0.00 0.00 0.00 2.83
273 274 9.943163 TGTTCCTTTTGTTTTCTTTTTCTTTTG 57.057 25.926 0.00 0.00 0.00 2.44
275 276 9.554395 TCTGTTCCTTTTGTTTTCTTTTTCTTT 57.446 25.926 0.00 0.00 0.00 2.52
276 277 8.988934 GTCTGTTCCTTTTGTTTTCTTTTTCTT 58.011 29.630 0.00 0.00 0.00 2.52
277 278 8.147704 TGTCTGTTCCTTTTGTTTTCTTTTTCT 58.852 29.630 0.00 0.00 0.00 2.52
278 279 8.221100 GTGTCTGTTCCTTTTGTTTTCTTTTTC 58.779 33.333 0.00 0.00 0.00 2.29
279 280 7.931407 AGTGTCTGTTCCTTTTGTTTTCTTTTT 59.069 29.630 0.00 0.00 0.00 1.94
280 281 7.441836 AGTGTCTGTTCCTTTTGTTTTCTTTT 58.558 30.769 0.00 0.00 0.00 2.27
281 282 6.993079 AGTGTCTGTTCCTTTTGTTTTCTTT 58.007 32.000 0.00 0.00 0.00 2.52
282 283 6.350194 GGAGTGTCTGTTCCTTTTGTTTTCTT 60.350 38.462 0.00 0.00 0.00 2.52
283 284 5.125578 GGAGTGTCTGTTCCTTTTGTTTTCT 59.874 40.000 0.00 0.00 0.00 2.52
284 285 5.105917 TGGAGTGTCTGTTCCTTTTGTTTTC 60.106 40.000 0.00 0.00 34.48 2.29
285 286 4.770010 TGGAGTGTCTGTTCCTTTTGTTTT 59.230 37.500 0.00 0.00 34.48 2.43
286 287 4.340617 TGGAGTGTCTGTTCCTTTTGTTT 58.659 39.130 0.00 0.00 34.48 2.83
287 288 3.963129 TGGAGTGTCTGTTCCTTTTGTT 58.037 40.909 0.00 0.00 34.48 2.83
288 289 3.644966 TGGAGTGTCTGTTCCTTTTGT 57.355 42.857 0.00 0.00 34.48 2.83
289 290 5.520376 AATTGGAGTGTCTGTTCCTTTTG 57.480 39.130 0.00 0.00 34.48 2.44
290 291 6.365520 ACTAATTGGAGTGTCTGTTCCTTTT 58.634 36.000 0.00 0.00 34.48 2.27
291 292 5.941788 ACTAATTGGAGTGTCTGTTCCTTT 58.058 37.500 0.00 0.00 34.48 3.11
292 293 5.568620 ACTAATTGGAGTGTCTGTTCCTT 57.431 39.130 0.00 0.00 34.48 3.36
293 294 5.071788 TCAACTAATTGGAGTGTCTGTTCCT 59.928 40.000 0.00 0.00 36.39 3.36
294 295 5.305585 TCAACTAATTGGAGTGTCTGTTCC 58.694 41.667 0.00 0.00 36.39 3.62
295 296 6.566753 GCTTCAACTAATTGGAGTGTCTGTTC 60.567 42.308 0.00 0.00 42.78 3.18
296 297 5.239525 GCTTCAACTAATTGGAGTGTCTGTT 59.760 40.000 0.00 0.00 42.78 3.16
297 298 4.757149 GCTTCAACTAATTGGAGTGTCTGT 59.243 41.667 0.00 0.00 42.78 3.41
298 299 4.999950 AGCTTCAACTAATTGGAGTGTCTG 59.000 41.667 0.00 0.00 42.78 3.51
299 300 5.234466 AGCTTCAACTAATTGGAGTGTCT 57.766 39.130 0.00 0.00 42.78 3.41
300 301 5.064071 GCTAGCTTCAACTAATTGGAGTGTC 59.936 44.000 7.70 0.00 42.78 3.67
301 302 4.938226 GCTAGCTTCAACTAATTGGAGTGT 59.062 41.667 7.70 0.00 42.78 3.55
302 303 5.064452 CAGCTAGCTTCAACTAATTGGAGTG 59.936 44.000 16.46 0.00 42.78 3.51
303 304 5.181748 CAGCTAGCTTCAACTAATTGGAGT 58.818 41.667 16.46 0.00 42.78 3.85
304 305 4.034975 GCAGCTAGCTTCAACTAATTGGAG 59.965 45.833 16.46 0.00 43.58 3.86
305 306 3.941483 GCAGCTAGCTTCAACTAATTGGA 59.059 43.478 16.46 0.00 41.15 3.53
306 307 3.691118 TGCAGCTAGCTTCAACTAATTGG 59.309 43.478 16.46 0.00 45.94 3.16
307 308 4.952262 TGCAGCTAGCTTCAACTAATTG 57.048 40.909 16.46 1.31 45.94 2.32
308 309 5.747951 GATGCAGCTAGCTTCAACTAATT 57.252 39.130 20.91 3.32 44.45 1.40
316 317 3.324993 GGTAGATGATGCAGCTAGCTTC 58.675 50.000 16.46 11.67 44.20 3.86
317 318 3.399440 GGTAGATGATGCAGCTAGCTT 57.601 47.619 16.46 0.00 44.20 3.74
319 320 3.065655 CAAGGTAGATGATGCAGCTAGC 58.934 50.000 6.62 6.62 46.73 3.42
320 321 4.558178 CTCAAGGTAGATGATGCAGCTAG 58.442 47.826 2.53 0.00 32.88 3.42
321 322 3.323115 CCTCAAGGTAGATGATGCAGCTA 59.677 47.826 2.53 0.00 30.76 3.32
322 323 2.104451 CCTCAAGGTAGATGATGCAGCT 59.896 50.000 2.53 0.00 33.54 4.24
323 324 2.492012 CCTCAAGGTAGATGATGCAGC 58.508 52.381 0.00 0.00 0.00 5.25
324 325 2.702478 TCCCTCAAGGTAGATGATGCAG 59.298 50.000 0.00 0.00 36.75 4.41
325 326 2.702478 CTCCCTCAAGGTAGATGATGCA 59.298 50.000 0.00 0.00 36.75 3.96
326 327 2.549778 GCTCCCTCAAGGTAGATGATGC 60.550 54.545 0.00 0.00 36.75 3.91
327 328 2.038295 GGCTCCCTCAAGGTAGATGATG 59.962 54.545 0.00 0.00 36.75 3.07
328 329 2.334023 GGCTCCCTCAAGGTAGATGAT 58.666 52.381 0.00 0.00 36.75 2.45
329 330 1.692762 GGGCTCCCTCAAGGTAGATGA 60.693 57.143 0.00 0.00 36.75 2.92
330 331 0.761802 GGGCTCCCTCAAGGTAGATG 59.238 60.000 0.00 0.00 36.75 2.90
331 332 0.343372 TGGGCTCCCTCAAGGTAGAT 59.657 55.000 6.50 0.00 36.75 1.98
332 333 0.617820 GTGGGCTCCCTCAAGGTAGA 60.618 60.000 6.50 0.00 36.75 2.59
333 334 1.908483 GTGGGCTCCCTCAAGGTAG 59.092 63.158 6.50 0.00 36.75 3.18
334 335 1.987855 CGTGGGCTCCCTCAAGGTA 60.988 63.158 6.50 0.00 36.75 3.08
335 336 3.322466 CGTGGGCTCCCTCAAGGT 61.322 66.667 6.50 0.00 36.75 3.50
336 337 4.101448 CCGTGGGCTCCCTCAAGG 62.101 72.222 6.50 0.96 36.94 3.61
337 338 4.785453 GCCGTGGGCTCCCTCAAG 62.785 72.222 6.50 0.00 46.69 3.02
347 348 2.768344 AGGTCCATAGGCCGTGGG 60.768 66.667 24.48 15.15 37.34 4.61
348 349 2.505982 CAGGTCCATAGGCCGTGG 59.494 66.667 20.60 20.60 38.11 4.94
349 350 2.203070 GCAGGTCCATAGGCCGTG 60.203 66.667 0.00 0.00 0.00 4.94
350 351 3.849951 CGCAGGTCCATAGGCCGT 61.850 66.667 0.00 0.00 0.00 5.68
353 354 4.530857 ACGCGCAGGTCCATAGGC 62.531 66.667 5.73 0.00 0.00 3.93
354 355 2.586079 CACGCGCAGGTCCATAGG 60.586 66.667 5.73 0.00 0.00 2.57
355 356 2.586079 CCACGCGCAGGTCCATAG 60.586 66.667 5.73 0.00 0.00 2.23
356 357 3.387091 ACCACGCGCAGGTCCATA 61.387 61.111 17.14 0.00 32.90 2.74
369 370 1.270625 TGACTTGATCCAACGGACCAC 60.271 52.381 0.00 0.00 32.98 4.16
370 371 1.001974 CTGACTTGATCCAACGGACCA 59.998 52.381 0.00 0.00 32.98 4.02
371 372 1.275291 TCTGACTTGATCCAACGGACC 59.725 52.381 0.00 0.00 32.98 4.46
372 373 2.743636 TCTGACTTGATCCAACGGAC 57.256 50.000 0.00 0.00 32.98 4.79
373 374 3.099905 AGATCTGACTTGATCCAACGGA 58.900 45.455 0.00 0.00 42.68 4.69
374 375 3.533606 AGATCTGACTTGATCCAACGG 57.466 47.619 0.00 0.00 42.68 4.44
375 376 5.957910 GTTAGATCTGACTTGATCCAACG 57.042 43.478 10.27 0.00 42.68 4.10
376 377 5.517054 GTCGTTAGATCTGACTTGATCCAAC 59.483 44.000 14.97 2.41 42.68 3.77
377 378 5.185056 TGTCGTTAGATCTGACTTGATCCAA 59.815 40.000 14.97 0.00 42.68 3.53
378 379 4.705023 TGTCGTTAGATCTGACTTGATCCA 59.295 41.667 14.97 0.40 42.68 3.41
379 380 5.250235 TGTCGTTAGATCTGACTTGATCC 57.750 43.478 14.97 0.00 42.68 3.36
380 381 5.277825 CCTGTCGTTAGATCTGACTTGATC 58.722 45.833 14.97 0.00 42.18 2.92
381 382 4.440802 GCCTGTCGTTAGATCTGACTTGAT 60.441 45.833 14.97 0.00 33.81 2.57
382 383 3.119459 GCCTGTCGTTAGATCTGACTTGA 60.119 47.826 14.97 3.95 33.81 3.02
383 384 3.182967 GCCTGTCGTTAGATCTGACTTG 58.817 50.000 14.97 1.66 33.81 3.16
384 385 2.159366 CGCCTGTCGTTAGATCTGACTT 60.159 50.000 14.97 0.00 33.81 3.01
385 386 1.402259 CGCCTGTCGTTAGATCTGACT 59.598 52.381 14.97 0.00 33.81 3.41
386 387 1.828832 CGCCTGTCGTTAGATCTGAC 58.171 55.000 5.18 6.52 0.00 3.51
387 388 0.100682 GCGCCTGTCGTTAGATCTGA 59.899 55.000 5.18 0.00 41.07 3.27
388 389 1.202973 CGCGCCTGTCGTTAGATCTG 61.203 60.000 5.18 0.00 41.07 2.90
389 390 1.064296 CGCGCCTGTCGTTAGATCT 59.936 57.895 0.00 0.00 41.07 2.75
390 391 2.577785 GCGCGCCTGTCGTTAGATC 61.578 63.158 23.24 0.00 41.07 2.75
391 392 2.582498 GCGCGCCTGTCGTTAGAT 60.582 61.111 23.24 0.00 41.07 1.98
392 393 3.350909 ATGCGCGCCTGTCGTTAGA 62.351 57.895 30.77 5.62 41.07 2.10
393 394 2.860628 GATGCGCGCCTGTCGTTAG 61.861 63.158 30.77 0.00 41.07 2.34
394 395 2.883730 GATGCGCGCCTGTCGTTA 60.884 61.111 30.77 7.41 41.07 3.18
405 406 3.100862 GAACTTCTGCCGGATGCGC 62.101 63.158 5.05 0.00 45.60 6.09
406 407 2.464459 GGAACTTCTGCCGGATGCG 61.464 63.158 5.05 0.00 45.60 4.73
407 408 1.372087 CTGGAACTTCTGCCGGATGC 61.372 60.000 5.05 0.00 41.77 3.91
408 409 0.036010 ACTGGAACTTCTGCCGGATG 60.036 55.000 5.05 0.00 34.57 3.51
409 410 0.250513 GACTGGAACTTCTGCCGGAT 59.749 55.000 5.05 0.00 34.57 4.18
410 411 1.671742 GACTGGAACTTCTGCCGGA 59.328 57.895 5.05 0.00 34.57 5.14
411 412 1.738099 CGACTGGAACTTCTGCCGG 60.738 63.158 0.00 0.00 36.60 6.13
412 413 1.738099 CCGACTGGAACTTCTGCCG 60.738 63.158 0.00 0.00 37.49 5.69
413 414 2.035442 GCCGACTGGAACTTCTGCC 61.035 63.158 0.00 0.00 37.49 4.85
414 415 2.035442 GGCCGACTGGAACTTCTGC 61.035 63.158 0.00 0.00 37.49 4.26
415 416 0.671781 CTGGCCGACTGGAACTTCTG 60.672 60.000 0.00 0.00 37.49 3.02
416 417 1.674057 CTGGCCGACTGGAACTTCT 59.326 57.895 0.00 0.00 37.49 2.85
417 418 2.035442 GCTGGCCGACTGGAACTTC 61.035 63.158 0.00 0.00 37.49 3.01
418 419 2.032681 GCTGGCCGACTGGAACTT 59.967 61.111 0.00 0.00 37.49 2.66
419 420 4.021925 GGCTGGCCGACTGGAACT 62.022 66.667 0.00 0.00 37.49 3.01
433 434 2.808181 ATAAACGTTTCCCGCCGGCT 62.808 55.000 26.68 3.43 41.42 5.52
434 435 1.088910 TATAAACGTTTCCCGCCGGC 61.089 55.000 19.07 19.07 41.42 6.13
435 436 0.652071 GTATAAACGTTTCCCGCCGG 59.348 55.000 18.42 0.00 41.42 6.13
436 437 1.325338 CTGTATAAACGTTTCCCGCCG 59.675 52.381 18.42 0.00 41.42 6.46
437 438 2.349590 ACTGTATAAACGTTTCCCGCC 58.650 47.619 18.42 3.20 41.42 6.13
438 439 4.176271 ACTACTGTATAAACGTTTCCCGC 58.824 43.478 18.42 7.27 41.42 6.13
439 440 6.555315 ACTACTACTGTATAAACGTTTCCCG 58.445 40.000 18.42 6.04 44.03 5.14
440 441 9.455847 CATACTACTACTGTATAAACGTTTCCC 57.544 37.037 18.42 7.15 0.00 3.97
443 444 9.294030 GCACATACTACTACTGTATAAACGTTT 57.706 33.333 18.90 18.90 0.00 3.60
444 445 8.680903 AGCACATACTACTACTGTATAAACGTT 58.319 33.333 0.00 0.00 0.00 3.99
445 446 8.218338 AGCACATACTACTACTGTATAAACGT 57.782 34.615 0.00 0.00 0.00 3.99
446 447 9.808808 CTAGCACATACTACTACTGTATAAACG 57.191 37.037 0.00 0.00 0.00 3.60
451 452 9.058174 CAACTCTAGCACATACTACTACTGTAT 57.942 37.037 0.00 0.00 0.00 2.29
452 453 7.012138 GCAACTCTAGCACATACTACTACTGTA 59.988 40.741 0.00 0.00 0.00 2.74
453 454 6.183360 GCAACTCTAGCACATACTACTACTGT 60.183 42.308 0.00 0.00 0.00 3.55
454 455 6.038825 AGCAACTCTAGCACATACTACTACTG 59.961 42.308 0.00 0.00 0.00 2.74
455 456 6.123651 AGCAACTCTAGCACATACTACTACT 58.876 40.000 0.00 0.00 0.00 2.57
456 457 6.380095 AGCAACTCTAGCACATACTACTAC 57.620 41.667 0.00 0.00 0.00 2.73
457 458 5.531659 GGAGCAACTCTAGCACATACTACTA 59.468 44.000 0.00 0.00 0.00 1.82
458 459 4.339814 GGAGCAACTCTAGCACATACTACT 59.660 45.833 0.00 0.00 0.00 2.57
459 460 4.339814 AGGAGCAACTCTAGCACATACTAC 59.660 45.833 0.00 0.00 0.00 2.73
460 461 4.537751 AGGAGCAACTCTAGCACATACTA 58.462 43.478 0.00 0.00 0.00 1.82
461 462 3.370104 AGGAGCAACTCTAGCACATACT 58.630 45.455 0.00 0.00 0.00 2.12
462 463 3.810310 AGGAGCAACTCTAGCACATAC 57.190 47.619 0.00 0.00 0.00 2.39
463 464 4.537751 AGTAGGAGCAACTCTAGCACATA 58.462 43.478 0.00 0.00 0.00 2.29
464 465 3.370104 AGTAGGAGCAACTCTAGCACAT 58.630 45.455 0.00 0.00 0.00 3.21
465 466 2.755655 GAGTAGGAGCAACTCTAGCACA 59.244 50.000 0.00 0.00 40.21 4.57
466 467 2.100087 GGAGTAGGAGCAACTCTAGCAC 59.900 54.545 3.50 0.00 42.48 4.40
467 468 2.291605 TGGAGTAGGAGCAACTCTAGCA 60.292 50.000 3.50 0.00 42.48 3.49
554 563 4.082523 TAGCCGTGGTGAGCAGCC 62.083 66.667 0.00 0.00 0.00 4.85
597 606 2.355986 CCTGGCTACGGTGCAGGTA 61.356 63.158 0.00 0.00 34.04 3.08
598 607 3.706373 CCTGGCTACGGTGCAGGT 61.706 66.667 0.00 0.00 34.04 4.00
600 609 1.153628 GTACCTGGCTACGGTGCAG 60.154 63.158 0.00 0.00 37.15 4.41
601 610 2.975536 GTACCTGGCTACGGTGCA 59.024 61.111 0.00 0.00 37.15 4.57
634 645 1.528309 GAGAGGGAGAGGGAGAGCG 60.528 68.421 0.00 0.00 0.00 5.03
635 646 0.032615 TTGAGAGGGAGAGGGAGAGC 60.033 60.000 0.00 0.00 0.00 4.09
641 652 1.099689 GAGTCGTTGAGAGGGAGAGG 58.900 60.000 0.00 0.00 0.00 3.69
642 653 1.742831 CTGAGTCGTTGAGAGGGAGAG 59.257 57.143 0.00 0.00 0.00 3.20
643 654 1.827681 CTGAGTCGTTGAGAGGGAGA 58.172 55.000 0.00 0.00 0.00 3.71
644 655 0.172352 GCTGAGTCGTTGAGAGGGAG 59.828 60.000 0.00 0.00 0.00 4.30
647 658 0.884514 TGAGCTGAGTCGTTGAGAGG 59.115 55.000 0.00 0.00 0.00 3.69
649 660 1.681264 TGTTGAGCTGAGTCGTTGAGA 59.319 47.619 0.00 0.00 0.00 3.27
650 661 2.057316 CTGTTGAGCTGAGTCGTTGAG 58.943 52.381 0.00 0.00 0.00 3.02
651 662 1.681264 TCTGTTGAGCTGAGTCGTTGA 59.319 47.619 0.00 0.00 0.00 3.18
652 663 2.140065 TCTGTTGAGCTGAGTCGTTG 57.860 50.000 0.00 0.00 0.00 4.10
654 665 2.353208 GGATTCTGTTGAGCTGAGTCGT 60.353 50.000 0.00 0.00 34.28 4.34
655 666 2.266554 GGATTCTGTTGAGCTGAGTCG 58.733 52.381 0.00 0.00 34.28 4.18
656 667 2.626840 GGGATTCTGTTGAGCTGAGTC 58.373 52.381 0.00 0.00 33.26 3.36
657 668 1.280421 GGGGATTCTGTTGAGCTGAGT 59.720 52.381 0.00 0.00 0.00 3.41
658 669 1.407989 GGGGGATTCTGTTGAGCTGAG 60.408 57.143 0.00 0.00 0.00 3.35
659 670 0.620556 GGGGGATTCTGTTGAGCTGA 59.379 55.000 0.00 0.00 0.00 4.26
660 671 0.622665 AGGGGGATTCTGTTGAGCTG 59.377 55.000 0.00 0.00 0.00 4.24
661 672 1.283321 GAAGGGGGATTCTGTTGAGCT 59.717 52.381 0.00 0.00 0.00 4.09
662 673 1.283321 AGAAGGGGGATTCTGTTGAGC 59.717 52.381 0.00 0.00 38.12 4.26
700 711 4.881440 TGATGGATGCCGCCTGCC 62.881 66.667 0.00 0.00 40.16 4.85
742 753 2.751436 TTGCTTGGAGGCGGATGC 60.751 61.111 0.00 0.00 41.71 3.91
748 759 1.362406 GAGCTACGTTGCTTGGAGGC 61.362 60.000 24.79 8.05 44.17 4.70
750 761 1.078759 CGGAGCTACGTTGCTTGGAG 61.079 60.000 24.79 12.83 44.17 3.86
751 762 1.080093 CGGAGCTACGTTGCTTGGA 60.080 57.895 24.79 0.00 44.17 3.53
754 765 1.080025 GACCGGAGCTACGTTGCTT 60.080 57.895 24.79 9.73 44.17 3.91
813 830 4.925861 GATCCAGGAGCAGCGGCC 62.926 72.222 4.82 0.00 42.56 6.13
816 833 2.108566 CCAGATCCAGGAGCAGCG 59.891 66.667 7.64 0.00 0.00 5.18
818 835 0.752054 GAGTCCAGATCCAGGAGCAG 59.248 60.000 7.64 0.00 35.42 4.24
819 836 0.337773 AGAGTCCAGATCCAGGAGCA 59.662 55.000 7.64 0.00 35.42 4.26
820 837 1.039856 GAGAGTCCAGATCCAGGAGC 58.960 60.000 0.00 0.00 35.42 4.70
821 838 1.063341 TGGAGAGTCCAGATCCAGGAG 60.063 57.143 4.80 0.00 42.67 3.69
822 839 1.010795 TGGAGAGTCCAGATCCAGGA 58.989 55.000 0.00 0.00 42.67 3.86
823 840 3.623365 TGGAGAGTCCAGATCCAGG 57.377 57.895 0.00 0.00 42.67 4.45
831 848 1.076014 TACTGGCGTGGAGAGTCCA 59.924 57.895 0.00 0.00 45.98 4.02
834 851 2.341101 CGGTACTGGCGTGGAGAGT 61.341 63.158 0.00 0.00 0.00 3.24
842 859 2.807895 CGGTTCACGGTACTGGCG 60.808 66.667 6.65 0.00 39.42 5.69
890 908 3.775654 GGCTGACAGGGGGACGAG 61.776 72.222 4.26 0.00 0.00 4.18
926 956 1.749334 CGGGAGGGAAGAAGATCCGG 61.749 65.000 0.00 0.00 40.62 5.14
1317 1347 3.151022 CCCTCGGAGGTGAGAGCC 61.151 72.222 22.07 0.00 38.28 4.70
1320 1350 2.314215 TAGGCCCTCGGAGGTGAGA 61.314 63.158 22.07 2.81 38.28 3.27
1369 1399 2.435059 GTTGAGCAGGCGGACCTC 60.435 66.667 0.00 0.00 46.34 3.85
1376 1406 4.704833 TCAGCGGGTTGAGCAGGC 62.705 66.667 0.00 0.00 37.01 4.85
1467 1497 1.891919 GTGGGTGTCGAAAGCAGCA 60.892 57.895 7.18 0.00 37.36 4.41
1470 1500 1.305201 GAAAGTGGGTGTCGAAAGCA 58.695 50.000 7.18 0.00 0.00 3.91
1583 1613 0.872388 CTTTAACACCGTCCAGTGGC 59.128 55.000 3.51 0.00 42.28 5.01
1629 1659 2.119029 TCGTCCTGCGACCATCGAT 61.119 57.895 1.69 0.00 45.68 3.59
1647 1677 1.065491 TCAATGGTGGCGCAGTAGAAT 60.065 47.619 10.83 0.00 0.00 2.40
1668 1698 3.610619 CTCCAGCACCATGACGCCA 62.611 63.158 0.00 0.00 0.00 5.69
1734 1764 2.125106 GTGTCTGCCATCGGGGAC 60.125 66.667 0.00 0.00 40.01 4.46
1765 1795 2.044806 AACAGCTCTCCGGCACTGTT 62.045 55.000 19.15 19.15 45.86 3.16
1788 1818 1.737735 CGAGAATCTGCGGTGCACA 60.738 57.895 20.43 0.00 33.79 4.57
1800 1830 0.246360 TGTCATGGTGTCGCGAGAAT 59.754 50.000 10.24 0.00 45.01 2.40
1836 1866 1.004185 CGATACACGTCGTACCTCCTG 60.004 57.143 0.00 0.00 36.88 3.86
1986 2016 1.857965 AGCTCAGGTAGATGCTGTCA 58.142 50.000 0.00 0.00 32.11 3.58
1991 2021 1.135139 TGTCGAAGCTCAGGTAGATGC 59.865 52.381 0.00 0.00 0.00 3.91
1993 2023 3.739519 GCAATGTCGAAGCTCAGGTAGAT 60.740 47.826 0.00 0.00 0.00 1.98
2059 2089 2.959030 TCAGACTATCGCTGCTAATGGT 59.041 45.455 0.00 0.00 33.45 3.55
2076 2106 3.071206 GCCGAGTGGGAGCTCAGA 61.071 66.667 17.19 0.00 38.47 3.27
2163 2193 7.513968 GTCTACAATGACTGACAAGATGTTTC 58.486 38.462 0.00 0.00 34.39 2.78
2194 2224 3.855950 GCCAGAAATGAAAAAGATGAGCG 59.144 43.478 0.00 0.00 0.00 5.03
2212 2242 3.933048 CTTCCCAGTGCCCTGCCAG 62.933 68.421 0.00 0.00 37.38 4.85
2220 2254 0.038892 CACATGTTGCTTCCCAGTGC 60.039 55.000 0.00 0.00 0.00 4.40
2234 2268 2.514902 CGGATTGTTTAACCGCACATG 58.485 47.619 0.00 0.00 40.19 3.21
2247 2289 5.461032 TTTTAATCAAAGCCACGGATTGT 57.539 34.783 0.00 0.00 33.59 2.71
2271 2313 5.865552 GCCACAGAGTATCACTACGTTTTTA 59.134 40.000 0.00 0.00 37.82 1.52
2276 2318 2.724454 AGCCACAGAGTATCACTACGT 58.276 47.619 0.00 0.00 37.82 3.57
2279 2321 3.617284 TCGAAGCCACAGAGTATCACTA 58.383 45.455 0.00 0.00 37.82 2.74
2303 2345 4.621747 CGAGTAGAAGCAGAGGACCATTTT 60.622 45.833 0.00 0.00 0.00 1.82
2305 2347 2.428890 CGAGTAGAAGCAGAGGACCATT 59.571 50.000 0.00 0.00 0.00 3.16
2306 2348 2.028130 CGAGTAGAAGCAGAGGACCAT 58.972 52.381 0.00 0.00 0.00 3.55
2311 2371 1.388547 AGAGCGAGTAGAAGCAGAGG 58.611 55.000 0.00 0.00 35.48 3.69
2465 2530 7.691213 TGGTTCCTAAATAACTGGATTGTACA 58.309 34.615 0.00 0.00 0.00 2.90
2466 2531 8.570068 TTGGTTCCTAAATAACTGGATTGTAC 57.430 34.615 0.00 0.00 0.00 2.90
2467 2532 9.762381 ATTTGGTTCCTAAATAACTGGATTGTA 57.238 29.630 0.00 0.00 0.00 2.41
2468 2533 8.664669 ATTTGGTTCCTAAATAACTGGATTGT 57.335 30.769 0.00 0.00 0.00 2.71
2487 2552 9.035890 CCCTTTCCTCTAAAAATCTAATTTGGT 57.964 33.333 0.00 0.00 31.77 3.67
2514 2579 4.553330 TCAGTTAGGATCGGCTTTTTCT 57.447 40.909 0.00 0.00 0.00 2.52
2515 2580 5.354234 TGAATCAGTTAGGATCGGCTTTTTC 59.646 40.000 0.00 0.00 0.00 2.29
2520 2585 2.223829 CGTGAATCAGTTAGGATCGGCT 60.224 50.000 0.00 0.00 0.00 5.52
2537 2602 7.655236 TTCGTATAATTTTTCCAAGACGTGA 57.345 32.000 0.00 0.00 0.00 4.35
2553 2618 7.275341 CGTGTGGGTGTTAGTATTTTCGTATAA 59.725 37.037 0.00 0.00 0.00 0.98
2706 2774 2.933287 CCCACACACCAGCCCCTA 60.933 66.667 0.00 0.00 0.00 3.53
2744 2813 2.712539 CGTGCGTGAAAACTGGCA 59.287 55.556 0.00 0.00 0.00 4.92
2830 2902 5.395546 CCCTGCAAAACATATGGCAACTAAT 60.396 40.000 7.80 0.00 35.59 1.73
2842 2914 1.550072 GCCATGTACCCTGCAAAACAT 59.450 47.619 0.00 0.00 32.91 2.71
2872 2946 1.398390 CCATCTGCTTACAAGAACGCC 59.602 52.381 0.00 0.00 0.00 5.68
2916 2994 4.343526 TCATGTACCCTGCAAAAACACATT 59.656 37.500 0.00 0.00 0.00 2.71
3031 3114 3.306156 GCCACCTACTAATACTAGGCAGC 60.306 52.174 0.00 0.00 40.50 5.25
3148 3232 1.985473 AACTGCAGTTGCCATCTCAA 58.015 45.000 30.66 0.00 41.18 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.