Multiple sequence alignment - TraesCS7D01G432000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G432000 chr7D 100.000 2505 0 0 1 2505 551736772 551739276 0.000000e+00 4626.0
1 TraesCS7D01G432000 chr7D 81.427 953 93 48 655 1538 33217449 33216512 0.000000e+00 702.0
2 TraesCS7D01G432000 chr7D 88.783 526 42 16 998 1507 33471338 33470814 1.640000e-176 628.0
3 TraesCS7D01G432000 chr7D 94.412 340 19 0 1165 1504 108085665 108086004 7.940000e-145 523.0
4 TraesCS7D01G432000 chr7D 81.489 497 57 17 1786 2275 551913697 551914165 2.350000e-100 375.0
5 TraesCS7D01G432000 chr7D 91.667 84 2 2 2267 2350 551738968 551739046 7.320000e-21 111.0
6 TraesCS7D01G432000 chr7D 91.667 84 2 2 2197 2275 551739038 551739121 7.320000e-21 111.0
7 TraesCS7D01G432000 chr7A 88.095 1134 67 27 711 1786 637297664 637298787 0.000000e+00 1284.0
8 TraesCS7D01G432000 chr7A 88.588 517 43 11 1001 1507 34033344 34032834 4.580000e-172 614.0
9 TraesCS7D01G432000 chr7A 91.480 446 32 6 1 443 637296321 637296763 2.130000e-170 608.0
10 TraesCS7D01G432000 chr7A 89.711 311 27 3 1967 2275 637299196 637299503 2.340000e-105 392.0
11 TraesCS7D01G432000 chr7A 86.288 299 19 10 1979 2275 637303810 637304088 3.130000e-79 305.0
12 TraesCS7D01G432000 chr7A 86.288 299 19 10 1979 2275 637308171 637308449 3.130000e-79 305.0
13 TraesCS7D01G432000 chr7A 86.288 299 19 10 1979 2275 637313305 637313583 3.130000e-79 305.0
14 TraesCS7D01G432000 chr7A 87.368 190 17 1 2267 2456 637299427 637299609 7.020000e-51 211.0
15 TraesCS7D01G432000 chr7A 85.789 190 14 3 2267 2456 637304009 637304185 3.290000e-44 189.0
16 TraesCS7D01G432000 chr7A 85.789 190 14 3 2267 2456 637308370 637308546 3.290000e-44 189.0
17 TraesCS7D01G432000 chr7A 85.789 190 14 3 2267 2456 637313504 637313680 3.290000e-44 189.0
18 TraesCS7D01G432000 chr7A 81.776 214 23 9 1761 1970 637298710 637298911 5.540000e-37 165.0
19 TraesCS7D01G432000 chr7A 96.226 53 2 0 2453 2505 637299694 637299746 1.230000e-13 87.9
20 TraesCS7D01G432000 chr7B 87.818 903 69 22 919 1786 596606320 596607216 0.000000e+00 1020.0
21 TraesCS7D01G432000 chr7B 84.534 472 46 12 48 506 596605291 596605748 2.290000e-120 442.0
22 TraesCS7D01G432000 chr7B 81.643 414 44 11 1890 2275 596607259 596607668 5.200000e-82 315.0
23 TraesCS7D01G432000 chr7B 93.478 184 8 3 2267 2450 596607589 596607768 1.140000e-68 270.0
24 TraesCS7D01G432000 chr7B 87.037 54 5 2 332 385 242674063 242674012 2.690000e-05 60.2
25 TraesCS7D01G432000 chrUn 87.634 558 49 15 992 1538 81832844 81833392 4.550000e-177 630.0
26 TraesCS7D01G432000 chrUn 86.288 299 19 10 1979 2275 303492018 303492296 3.130000e-79 305.0
27 TraesCS7D01G432000 chrUn 85.789 190 14 3 2267 2456 303492217 303492393 3.290000e-44 189.0
28 TraesCS7D01G432000 chr4A 87.970 532 43 13 997 1516 692358847 692359369 2.130000e-170 608.0
29 TraesCS7D01G432000 chr4A 87.643 526 45 13 995 1507 693596934 693596416 5.970000e-166 593.0
30 TraesCS7D01G432000 chr4A 86.492 533 48 16 998 1507 692079296 692079827 4.680000e-157 564.0
31 TraesCS7D01G432000 chr4A 84.066 182 17 9 2267 2446 713037468 713037639 5.540000e-37 165.0
32 TraesCS7D01G432000 chr6A 85.300 517 58 13 1001 1504 19167488 19167999 3.690000e-143 518.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G432000 chr7D 551736772 551739276 2504 False 1616.000000 4626 94.444667 1 2505 3 chr7D.!!$F3 2504
1 TraesCS7D01G432000 chr7D 33216512 33217449 937 True 702.000000 702 81.427000 655 1538 1 chr7D.!!$R1 883
2 TraesCS7D01G432000 chr7D 33470814 33471338 524 True 628.000000 628 88.783000 998 1507 1 chr7D.!!$R2 509
3 TraesCS7D01G432000 chr7A 34032834 34033344 510 True 614.000000 614 88.588000 1001 1507 1 chr7A.!!$R1 506
4 TraesCS7D01G432000 chr7A 637296321 637299746 3425 False 457.983333 1284 89.109333 1 2505 6 chr7A.!!$F1 2504
5 TraesCS7D01G432000 chr7A 637303810 637308546 4736 False 247.000000 305 86.038500 1979 2456 4 chr7A.!!$F2 477
6 TraesCS7D01G432000 chr7B 596605291 596607768 2477 False 511.750000 1020 86.868250 48 2450 4 chr7B.!!$F1 2402
7 TraesCS7D01G432000 chrUn 81832844 81833392 548 False 630.000000 630 87.634000 992 1538 1 chrUn.!!$F1 546
8 TraesCS7D01G432000 chr4A 692358847 692359369 522 False 608.000000 608 87.970000 997 1516 1 chr4A.!!$F2 519
9 TraesCS7D01G432000 chr4A 693596416 693596934 518 True 593.000000 593 87.643000 995 1507 1 chr4A.!!$R1 512
10 TraesCS7D01G432000 chr4A 692079296 692079827 531 False 564.000000 564 86.492000 998 1507 1 chr4A.!!$F1 509
11 TraesCS7D01G432000 chr6A 19167488 19167999 511 False 518.000000 518 85.300000 1001 1504 1 chr6A.!!$F1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
706 729 0.105224 CAACGGGACAGGTACACACA 59.895 55.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 2979 0.104304 GACGACAATCGGTAGGCCAT 59.896 55.0 5.01 0.0 45.59 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.635877 AAGTAGTCATCAAACACGAATATCTC 57.364 34.615 0.00 0.00 0.00 2.75
330 333 3.985019 ATAATGTTCCCGGTGTGTACA 57.015 42.857 0.00 0.00 0.00 2.90
370 373 9.619316 TGTGTATTAAAAATAGACATGTGTTGC 57.381 29.630 1.15 0.00 0.00 4.17
410 416 8.791327 AAAAGTGAACCAAAGAAATGAAACAT 57.209 26.923 0.00 0.00 0.00 2.71
445 451 8.981724 AGAAACACCTTAGAAACAAAGAAAAC 57.018 30.769 0.00 0.00 0.00 2.43
449 467 4.340097 ACCTTAGAAACAAAGAAAACCCCG 59.660 41.667 0.00 0.00 0.00 5.73
457 475 5.408880 ACAAAGAAAACCCCGAAGAAAAA 57.591 34.783 0.00 0.00 0.00 1.94
480 498 6.514012 AAGGGAAAACCCATGAGAAATTTT 57.486 33.333 8.05 0.00 41.63 1.82
483 501 7.016296 AGGGAAAACCCATGAGAAATTTTAGA 58.984 34.615 8.05 0.00 41.63 2.10
612 631 8.251026 TCAAAGAGAAAAAGGAAAGAGGAAAAC 58.749 33.333 0.00 0.00 0.00 2.43
632 651 7.201522 GGAAAACCCGAAGAAAATCAAATATGC 60.202 37.037 0.00 0.00 0.00 3.14
636 655 4.741676 CCGAAGAAAATCAAATATGCAGCC 59.258 41.667 0.00 0.00 0.00 4.85
645 664 4.088634 TCAAATATGCAGCCCTGAAGTTT 58.911 39.130 0.00 0.00 0.00 2.66
647 666 5.357878 TCAAATATGCAGCCCTGAAGTTTAG 59.642 40.000 0.00 0.00 0.00 1.85
650 669 1.202927 TGCAGCCCTGAAGTTTAGCTT 60.203 47.619 0.00 0.00 40.76 3.74
651 670 1.889170 GCAGCCCTGAAGTTTAGCTTT 59.111 47.619 0.00 0.00 37.59 3.51
653 672 2.160417 CAGCCCTGAAGTTTAGCTTTCG 59.840 50.000 0.00 0.00 37.59 3.46
690 709 1.819632 CCGGATAGCAGCCCACAAC 60.820 63.158 0.00 0.00 0.00 3.32
705 728 0.105408 ACAACGGGACAGGTACACAC 59.895 55.000 0.00 0.00 0.00 3.82
706 729 0.105224 CAACGGGACAGGTACACACA 59.895 55.000 0.00 0.00 0.00 3.72
707 730 1.053424 AACGGGACAGGTACACACAT 58.947 50.000 0.00 0.00 0.00 3.21
708 731 1.053424 ACGGGACAGGTACACACATT 58.947 50.000 0.00 0.00 0.00 2.71
709 732 1.001633 ACGGGACAGGTACACACATTC 59.998 52.381 0.00 0.00 0.00 2.67
841 1538 1.815212 CGTCAGATCCGAGCGCAATG 61.815 60.000 11.47 0.00 0.00 2.82
854 1551 2.328235 GCAATGCGAGATCCATGCT 58.672 52.632 0.00 0.00 0.00 3.79
855 1552 0.666913 GCAATGCGAGATCCATGCTT 59.333 50.000 0.00 0.00 0.00 3.91
865 1562 3.747579 CCATGCTTCCCCCTGCCT 61.748 66.667 0.00 0.00 0.00 4.75
912 1633 1.077298 AATTCCCCACCAACCTCCCA 61.077 55.000 0.00 0.00 0.00 4.37
916 1637 2.436109 CCACCAACCTCCCACCTG 59.564 66.667 0.00 0.00 0.00 4.00
1082 2121 2.261671 CACCAAGGTCCGTCTCCG 59.738 66.667 0.00 0.00 0.00 4.63
1162 2235 4.520743 TTGAATCGAATCGATGTGCTTC 57.479 40.909 19.44 13.19 46.30 3.86
1523 2596 2.892640 CGGGAGCGAGACCAATCA 59.107 61.111 0.00 0.00 0.00 2.57
1526 2599 0.036388 GGGAGCGAGACCAATCACAA 60.036 55.000 0.00 0.00 0.00 3.33
1573 2671 1.406069 CCAGCAGTAGTTGATTCGCCT 60.406 52.381 0.00 0.00 0.00 5.52
1574 2672 1.662629 CAGCAGTAGTTGATTCGCCTG 59.337 52.381 0.00 0.00 0.00 4.85
1576 2674 1.009829 CAGTAGTTGATTCGCCTGCC 58.990 55.000 0.00 0.00 0.00 4.85
1577 2675 0.107654 AGTAGTTGATTCGCCTGCCC 60.108 55.000 0.00 0.00 0.00 5.36
1579 2677 0.618458 TAGTTGATTCGCCTGCCCTT 59.382 50.000 0.00 0.00 0.00 3.95
1580 2678 0.251341 AGTTGATTCGCCTGCCCTTT 60.251 50.000 0.00 0.00 0.00 3.11
1582 2680 1.816224 GTTGATTCGCCTGCCCTTTTA 59.184 47.619 0.00 0.00 0.00 1.52
1583 2681 2.208132 TGATTCGCCTGCCCTTTTAA 57.792 45.000 0.00 0.00 0.00 1.52
1598 2696 6.540914 TGCCCTTTTAATTAGATCGTGTTAGG 59.459 38.462 0.00 0.00 0.00 2.69
1600 2698 7.254692 GCCCTTTTAATTAGATCGTGTTAGGTC 60.255 40.741 0.00 0.00 0.00 3.85
1697 2797 3.930336 TGCAATTCTGAGGTACTGTGAG 58.070 45.455 0.00 0.00 41.55 3.51
1717 2817 1.280421 GGTTGATGCCTCCTGTTCTCT 59.720 52.381 0.00 0.00 0.00 3.10
1718 2818 2.354259 GTTGATGCCTCCTGTTCTCTG 58.646 52.381 0.00 0.00 0.00 3.35
1719 2819 1.942776 TGATGCCTCCTGTTCTCTGA 58.057 50.000 0.00 0.00 0.00 3.27
1720 2820 2.259917 TGATGCCTCCTGTTCTCTGAA 58.740 47.619 0.00 0.00 0.00 3.02
1721 2821 2.842496 TGATGCCTCCTGTTCTCTGAAT 59.158 45.455 0.00 0.00 0.00 2.57
1722 2822 3.118482 TGATGCCTCCTGTTCTCTGAATC 60.118 47.826 0.00 0.00 0.00 2.52
1723 2823 1.556911 TGCCTCCTGTTCTCTGAATCC 59.443 52.381 0.00 0.00 0.00 3.01
1724 2824 1.836802 GCCTCCTGTTCTCTGAATCCT 59.163 52.381 0.00 0.00 0.00 3.24
1725 2825 2.158971 GCCTCCTGTTCTCTGAATCCTC 60.159 54.545 0.00 0.00 0.00 3.71
1726 2826 3.102972 CCTCCTGTTCTCTGAATCCTCA 58.897 50.000 0.00 0.00 0.00 3.86
1727 2827 3.710677 CCTCCTGTTCTCTGAATCCTCAT 59.289 47.826 0.00 0.00 0.00 2.90
1728 2828 4.443175 CCTCCTGTTCTCTGAATCCTCATG 60.443 50.000 0.00 0.00 0.00 3.07
1729 2829 4.099633 TCCTGTTCTCTGAATCCTCATGT 58.900 43.478 0.00 0.00 0.00 3.21
1730 2830 4.081254 TCCTGTTCTCTGAATCCTCATGTG 60.081 45.833 0.00 0.00 0.00 3.21
1731 2831 4.081254 CCTGTTCTCTGAATCCTCATGTGA 60.081 45.833 0.00 0.00 0.00 3.58
1732 2832 5.396548 CCTGTTCTCTGAATCCTCATGTGAT 60.397 44.000 0.00 0.00 0.00 3.06
1733 2833 6.058553 TGTTCTCTGAATCCTCATGTGATT 57.941 37.500 11.35 11.35 35.21 2.57
1734 2834 6.479006 TGTTCTCTGAATCCTCATGTGATTT 58.521 36.000 12.36 0.00 32.74 2.17
1735 2835 6.944290 TGTTCTCTGAATCCTCATGTGATTTT 59.056 34.615 12.36 0.00 32.74 1.82
1736 2836 7.120285 TGTTCTCTGAATCCTCATGTGATTTTC 59.880 37.037 12.36 6.20 32.74 2.29
1737 2837 5.814188 TCTCTGAATCCTCATGTGATTTTCG 59.186 40.000 12.36 6.60 32.74 3.46
1738 2838 5.491070 TCTGAATCCTCATGTGATTTTCGT 58.509 37.500 12.36 0.00 32.74 3.85
1739 2839 5.939883 TCTGAATCCTCATGTGATTTTCGTT 59.060 36.000 12.36 0.00 32.74 3.85
1740 2840 6.092670 TCTGAATCCTCATGTGATTTTCGTTC 59.907 38.462 12.36 3.60 32.74 3.95
1741 2841 5.704978 TGAATCCTCATGTGATTTTCGTTCA 59.295 36.000 12.36 5.52 32.74 3.18
1742 2842 5.551760 ATCCTCATGTGATTTTCGTTCAC 57.448 39.130 0.00 0.00 43.04 3.18
1743 2843 4.641396 TCCTCATGTGATTTTCGTTCACT 58.359 39.130 5.52 0.00 43.12 3.41
1744 2844 4.452114 TCCTCATGTGATTTTCGTTCACTG 59.548 41.667 5.52 2.44 43.12 3.66
1745 2845 4.452114 CCTCATGTGATTTTCGTTCACTGA 59.548 41.667 5.52 5.87 43.12 3.41
1746 2846 5.049474 CCTCATGTGATTTTCGTTCACTGAA 60.049 40.000 5.52 0.00 43.12 3.02
1747 2847 6.348786 CCTCATGTGATTTTCGTTCACTGAAT 60.349 38.462 5.52 0.00 43.12 2.57
1748 2848 6.602179 TCATGTGATTTTCGTTCACTGAATC 58.398 36.000 5.52 0.00 43.12 2.52
1749 2849 5.356882 TGTGATTTTCGTTCACTGAATCC 57.643 39.130 5.52 0.00 43.12 3.01
1750 2850 5.063204 TGTGATTTTCGTTCACTGAATCCT 58.937 37.500 5.52 0.00 43.12 3.24
1751 2851 5.179368 TGTGATTTTCGTTCACTGAATCCTC 59.821 40.000 5.52 0.00 43.12 3.71
1752 2852 5.409826 GTGATTTTCGTTCACTGAATCCTCT 59.590 40.000 0.00 0.00 40.26 3.69
1753 2853 5.997746 TGATTTTCGTTCACTGAATCCTCTT 59.002 36.000 0.00 0.00 0.00 2.85
1754 2854 5.673337 TTTTCGTTCACTGAATCCTCTTG 57.327 39.130 0.00 0.00 0.00 3.02
1755 2855 4.336889 TTCGTTCACTGAATCCTCTTGT 57.663 40.909 0.00 0.00 0.00 3.16
1756 2856 3.653344 TCGTTCACTGAATCCTCTTGTG 58.347 45.455 0.00 0.00 0.00 3.33
1757 2857 3.320826 TCGTTCACTGAATCCTCTTGTGA 59.679 43.478 0.00 0.00 35.50 3.58
1758 2858 4.021104 TCGTTCACTGAATCCTCTTGTGAT 60.021 41.667 0.00 0.00 36.43 3.06
1759 2859 4.692625 CGTTCACTGAATCCTCTTGTGATT 59.307 41.667 0.00 0.00 36.43 2.57
1760 2860 5.163913 CGTTCACTGAATCCTCTTGTGATTC 60.164 44.000 6.14 6.14 45.34 2.52
1761 2861 4.836825 TCACTGAATCCTCTTGTGATTCC 58.163 43.478 9.72 0.00 44.80 3.01
1762 2862 4.533707 TCACTGAATCCTCTTGTGATTCCT 59.466 41.667 9.72 0.00 44.80 3.36
1763 2863 4.634883 CACTGAATCCTCTTGTGATTCCTG 59.365 45.833 9.72 6.20 44.80 3.86
1764 2864 4.288105 ACTGAATCCTCTTGTGATTCCTGT 59.712 41.667 9.72 6.69 44.80 4.00
1765 2865 5.222007 ACTGAATCCTCTTGTGATTCCTGTT 60.222 40.000 9.72 0.00 44.80 3.16
1766 2866 5.248640 TGAATCCTCTTGTGATTCCTGTTC 58.751 41.667 9.72 0.00 44.80 3.18
1767 2867 4.916041 ATCCTCTTGTGATTCCTGTTCA 57.084 40.909 0.00 0.00 0.00 3.18
1768 2868 4.008074 TCCTCTTGTGATTCCTGTTCAC 57.992 45.455 0.00 0.00 43.04 3.18
1786 2886 5.702670 TGTTCACTGAATCCTCTTGTGATTC 59.297 40.000 6.14 6.14 45.34 2.52
1814 2914 6.617782 TCTCTGAATCCTCTTGTGATTTCT 57.382 37.500 0.00 0.00 32.74 2.52
1848 2948 5.551305 TCCTCTTGTGATTTTCTCTGTGA 57.449 39.130 0.00 0.00 0.00 3.58
1856 2957 4.621886 GTGATTTTCTCTGTGACGGTAGAC 59.378 45.833 0.00 0.00 0.00 2.59
1868 2969 1.874345 CGGTAGACGTCCTGTGGCTT 61.874 60.000 13.01 0.00 37.93 4.35
1873 2974 1.507141 GACGTCCTGTGGCTTTGGTG 61.507 60.000 3.51 0.00 0.00 4.17
1881 2982 3.196648 GGCTTTGGTGCCGTATGG 58.803 61.111 0.00 0.00 43.74 2.74
1892 2993 3.210857 CCGTATGGCCTACCGATTG 57.789 57.895 3.32 0.00 39.70 2.67
1904 3005 2.490217 CGATTGTCGTCGGCCTCT 59.510 61.111 0.00 0.00 37.94 3.69
1907 3008 0.454600 GATTGTCGTCGGCCTCTGTA 59.545 55.000 0.00 0.00 0.00 2.74
1917 3018 1.747206 CGGCCTCTGTAGGGAATTTGG 60.747 57.143 0.00 0.00 43.87 3.28
1918 3019 1.564348 GGCCTCTGTAGGGAATTTGGA 59.436 52.381 0.00 0.00 43.87 3.53
1921 3022 4.281657 GCCTCTGTAGGGAATTTGGATTT 58.718 43.478 0.00 0.00 43.87 2.17
1925 3026 3.103742 TGTAGGGAATTTGGATTTGGCC 58.896 45.455 0.00 0.00 0.00 5.36
1927 3028 1.203415 AGGGAATTTGGATTTGGCCCA 60.203 47.619 0.00 0.00 32.00 5.36
1928 3029 1.632920 GGGAATTTGGATTTGGCCCAA 59.367 47.619 0.00 0.00 41.53 4.12
1929 3030 2.617788 GGGAATTTGGATTTGGCCCAAC 60.618 50.000 0.00 0.00 42.80 3.77
1930 3031 2.305635 GGAATTTGGATTTGGCCCAACT 59.694 45.455 0.00 0.00 42.80 3.16
1931 3032 3.599343 GAATTTGGATTTGGCCCAACTC 58.401 45.455 5.30 5.30 42.80 3.01
1932 3033 2.094100 TTTGGATTTGGCCCAACTCA 57.906 45.000 14.89 2.77 42.80 3.41
1933 3034 2.323999 TTGGATTTGGCCCAACTCAT 57.676 45.000 14.89 0.00 38.64 2.90
1934 3035 1.559368 TGGATTTGGCCCAACTCATG 58.441 50.000 14.89 0.00 0.00 3.07
1935 3036 1.076841 TGGATTTGGCCCAACTCATGA 59.923 47.619 14.89 0.00 0.00 3.07
1936 3037 2.292389 TGGATTTGGCCCAACTCATGAT 60.292 45.455 14.89 0.00 0.00 2.45
1937 3038 2.363359 GGATTTGGCCCAACTCATGATC 59.637 50.000 14.89 5.72 0.00 2.92
1938 3039 1.851304 TTTGGCCCAACTCATGATCC 58.149 50.000 0.00 0.00 0.00 3.36
1939 3040 1.002069 TTGGCCCAACTCATGATCCT 58.998 50.000 0.00 0.00 0.00 3.24
1940 3041 0.256752 TGGCCCAACTCATGATCCTG 59.743 55.000 0.00 0.00 0.00 3.86
1941 3042 0.548031 GGCCCAACTCATGATCCTGA 59.452 55.000 0.00 0.52 0.00 3.86
2018 3408 8.360390 GTTTCTTAACTGGATGGTCAAAAAGAT 58.640 33.333 0.00 0.00 0.00 2.40
2033 3423 9.101655 GGTCAAAAAGATCATTGGATTATTTGG 57.898 33.333 0.00 0.00 34.66 3.28
2042 3432 7.931578 TCATTGGATTATTTGGTTCGTTAGT 57.068 32.000 0.00 0.00 0.00 2.24
2057 3447 6.423862 GTTCGTTAGTGCAAAATGTACTCAA 58.576 36.000 4.35 0.00 42.30 3.02
2128 3541 0.169009 GTCATTTCGGCTGCTTGGTC 59.831 55.000 0.00 0.00 0.00 4.02
2164 3577 4.523083 TGGGTCTTGAAATAAATCGAGGG 58.477 43.478 0.00 0.00 32.56 4.30
2194 3608 4.740822 CCTGCCCTGTTTCCCGGG 62.741 72.222 16.85 16.85 43.60 5.73
2201 3615 3.944250 CTGTTTCCCGGGCCAGCAT 62.944 63.158 18.49 0.00 0.00 3.79
2242 3656 8.507249 GTCAAAATTCTGAAGTAGTAAGCACAT 58.493 33.333 0.00 0.00 0.00 3.21
2265 3679 3.003275 AGTGTGTTCGTGTTATGCCAAAG 59.997 43.478 0.00 0.00 0.00 2.77
2266 3680 2.287308 TGTGTTCGTGTTATGCCAAAGC 60.287 45.455 0.00 0.00 40.48 3.51
2277 3691 3.863681 GCCAAAGCAACATGAACGA 57.136 47.368 0.00 0.00 39.53 3.85
2278 3692 1.689959 GCCAAAGCAACATGAACGAG 58.310 50.000 0.00 0.00 39.53 4.18
2279 3693 1.689959 CCAAAGCAACATGAACGAGC 58.310 50.000 0.00 0.00 0.00 5.03
2280 3694 1.267806 CCAAAGCAACATGAACGAGCT 59.732 47.619 0.00 0.00 37.08 4.09
2281 3695 2.313234 CAAAGCAACATGAACGAGCTG 58.687 47.619 0.00 0.00 35.42 4.24
2282 3696 1.597742 AAGCAACATGAACGAGCTGT 58.402 45.000 0.00 0.00 35.42 4.40
2283 3697 1.151668 AGCAACATGAACGAGCTGTC 58.848 50.000 0.00 0.00 33.67 3.51
2284 3698 0.166814 GCAACATGAACGAGCTGTCC 59.833 55.000 0.00 0.00 0.00 4.02
2285 3699 1.511850 CAACATGAACGAGCTGTCCA 58.488 50.000 0.00 0.00 0.00 4.02
2286 3700 1.462283 CAACATGAACGAGCTGTCCAG 59.538 52.381 0.00 0.00 0.00 3.86
2287 3701 0.681733 ACATGAACGAGCTGTCCAGT 59.318 50.000 0.00 0.00 0.00 4.00
2288 3702 1.337260 ACATGAACGAGCTGTCCAGTC 60.337 52.381 0.00 0.00 0.00 3.51
2289 3703 0.969149 ATGAACGAGCTGTCCAGTCA 59.031 50.000 0.00 0.00 0.00 3.41
2290 3704 0.750249 TGAACGAGCTGTCCAGTCAA 59.250 50.000 0.00 0.00 0.00 3.18
2291 3705 1.138069 TGAACGAGCTGTCCAGTCAAA 59.862 47.619 0.00 0.00 0.00 2.69
2292 3706 2.210116 GAACGAGCTGTCCAGTCAAAA 58.790 47.619 0.00 0.00 0.00 2.44
2293 3707 2.550830 ACGAGCTGTCCAGTCAAAAT 57.449 45.000 0.00 0.00 0.00 1.82
2294 3708 2.851195 ACGAGCTGTCCAGTCAAAATT 58.149 42.857 0.00 0.00 0.00 1.82
2295 3709 2.808543 ACGAGCTGTCCAGTCAAAATTC 59.191 45.455 0.00 0.00 0.00 2.17
2296 3710 3.070018 CGAGCTGTCCAGTCAAAATTCT 58.930 45.455 0.00 0.00 0.00 2.40
2297 3711 3.120408 CGAGCTGTCCAGTCAAAATTCTG 60.120 47.826 0.00 0.00 0.00 3.02
2298 3712 4.067896 GAGCTGTCCAGTCAAAATTCTGA 58.932 43.478 0.00 0.00 34.02 3.27
2299 3713 4.464008 AGCTGTCCAGTCAAAATTCTGAA 58.536 39.130 0.00 0.00 34.02 3.02
2300 3714 4.518211 AGCTGTCCAGTCAAAATTCTGAAG 59.482 41.667 0.00 0.00 34.02 3.02
2301 3715 4.276926 GCTGTCCAGTCAAAATTCTGAAGT 59.723 41.667 0.00 0.00 34.02 3.01
2302 3716 5.470098 GCTGTCCAGTCAAAATTCTGAAGTA 59.530 40.000 0.00 0.00 34.02 2.24
2303 3717 6.566753 GCTGTCCAGTCAAAATTCTGAAGTAC 60.567 42.308 0.00 0.00 34.02 2.73
2304 3718 5.465390 TGTCCAGTCAAAATTCTGAAGTACG 59.535 40.000 0.00 0.00 34.02 3.67
2305 3719 5.465724 GTCCAGTCAAAATTCTGAAGTACGT 59.534 40.000 0.00 0.00 34.02 3.57
2306 3720 6.643770 GTCCAGTCAAAATTCTGAAGTACGTA 59.356 38.462 0.00 0.00 34.02 3.57
2307 3721 6.866770 TCCAGTCAAAATTCTGAAGTACGTAG 59.133 38.462 0.00 0.00 34.02 3.51
2308 3722 6.645415 CCAGTCAAAATTCTGAAGTACGTAGT 59.355 38.462 0.00 0.00 38.03 2.73
2309 3723 7.811236 CCAGTCAAAATTCTGAAGTACGTAGTA 59.189 37.037 2.72 0.00 36.46 1.82
2310 3724 9.188588 CAGTCAAAATTCTGAAGTACGTAGTAA 57.811 33.333 2.72 0.00 38.11 2.24
2323 3737 4.778534 ACGTAGTAAGCACATAGTGTGT 57.221 40.909 11.29 0.00 45.67 3.72
2324 3738 5.130292 ACGTAGTAAGCACATAGTGTGTT 57.870 39.130 11.29 2.96 45.67 3.32
2325 3739 5.159209 ACGTAGTAAGCACATAGTGTGTTC 58.841 41.667 11.29 0.00 45.67 3.18
2326 3740 6.122604 ACGTAGTAAGCACATAGTGTGTTCG 61.123 44.000 11.29 7.45 45.67 3.95
2327 3741 8.433758 ACGTAGTAAGCACATAGTGTGTTCGT 62.434 42.308 11.29 7.98 45.67 3.85
2334 3748 4.637968 CACATAGTGTGTTCGTGTTATGC 58.362 43.478 2.02 0.00 43.08 3.14
2335 3749 3.682858 ACATAGTGTGTTCGTGTTATGCC 59.317 43.478 0.00 0.00 38.01 4.40
2336 3750 2.248280 AGTGTGTTCGTGTTATGCCA 57.752 45.000 0.00 0.00 0.00 4.92
2337 3751 2.566913 AGTGTGTTCGTGTTATGCCAA 58.433 42.857 0.00 0.00 0.00 4.52
2338 3752 2.946329 AGTGTGTTCGTGTTATGCCAAA 59.054 40.909 0.00 0.00 0.00 3.28
2339 3753 3.003275 AGTGTGTTCGTGTTATGCCAAAG 59.997 43.478 0.00 0.00 0.00 2.77
2446 8212 2.253603 CTTTTTATCGCAGGTGCTTGC 58.746 47.619 0.00 0.00 40.67 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
388 394 8.463930 TCTATGTTTCATTTCTTTGGTTCACT 57.536 30.769 0.00 0.00 0.00 3.41
460 478 9.554395 TTTTCTAAAATTTCTCATGGGTTTTCC 57.446 29.630 0.00 0.00 39.75 3.13
568 586 9.413734 TCTCTTTGATTTTCTTTCTTTTCTCCT 57.586 29.630 0.00 0.00 0.00 3.69
612 631 4.741676 GCTGCATATTTGATTTTCTTCGGG 59.258 41.667 0.00 0.00 0.00 5.14
632 651 2.160417 CGAAAGCTAAACTTCAGGGCTG 59.840 50.000 0.00 0.00 37.75 4.85
636 655 3.314553 TCGACGAAAGCTAAACTTCAGG 58.685 45.455 0.00 0.00 37.75 3.86
690 709 1.001520 TGAATGTGTGTACCTGTCCCG 59.998 52.381 0.00 0.00 0.00 5.14
705 728 0.667487 ACTGCGGTCTCGTGTGAATG 60.667 55.000 0.00 0.00 38.89 2.67
706 729 0.388649 GACTGCGGTCTCGTGTGAAT 60.389 55.000 18.76 0.00 39.24 2.57
707 730 1.007734 GACTGCGGTCTCGTGTGAA 60.008 57.895 18.76 0.00 39.24 3.18
708 731 2.643272 GACTGCGGTCTCGTGTGA 59.357 61.111 18.76 0.00 39.24 3.58
709 732 2.430921 GGACTGCGGTCTCGTGTG 60.431 66.667 24.48 0.00 41.82 3.82
841 1538 1.599240 GGGGAAGCATGGATCTCGC 60.599 63.158 0.00 0.00 0.00 5.03
912 1633 0.192566 TGGGTAGTGGGAGAACAGGT 59.807 55.000 0.00 0.00 0.00 4.00
916 1637 2.629051 CGAATTGGGTAGTGGGAGAAC 58.371 52.381 0.00 0.00 0.00 3.01
971 1938 4.347453 CCTTTGCTGTGCGGGTGC 62.347 66.667 0.00 0.00 43.20 5.01
972 1939 4.347453 GCCTTTGCTGTGCGGGTG 62.347 66.667 0.00 0.00 33.53 4.61
973 1940 4.892965 TGCCTTTGCTGTGCGGGT 62.893 61.111 0.00 0.00 38.71 5.28
1082 2121 2.442458 GAGGGACGGGGAGGAGAC 60.442 72.222 0.00 0.00 0.00 3.36
1162 2235 4.785453 GACTTCCTGGCGGCCTGG 62.785 72.222 32.48 32.48 42.93 4.45
1538 2622 4.321966 TGGCGAACGGTGGCATGA 62.322 61.111 10.38 0.00 36.93 3.07
1573 2671 6.540914 CCTAACACGATCTAATTAAAAGGGCA 59.459 38.462 0.00 0.00 0.00 5.36
1574 2672 6.541278 ACCTAACACGATCTAATTAAAAGGGC 59.459 38.462 0.00 0.00 0.00 5.19
1576 2674 7.490402 ACGACCTAACACGATCTAATTAAAAGG 59.510 37.037 0.00 0.00 0.00 3.11
1577 2675 8.403606 ACGACCTAACACGATCTAATTAAAAG 57.596 34.615 0.00 0.00 0.00 2.27
1579 2677 8.649841 CAAACGACCTAACACGATCTAATTAAA 58.350 33.333 0.00 0.00 0.00 1.52
1580 2678 7.201461 GCAAACGACCTAACACGATCTAATTAA 60.201 37.037 0.00 0.00 0.00 1.40
1582 2680 5.063060 GCAAACGACCTAACACGATCTAATT 59.937 40.000 0.00 0.00 0.00 1.40
1583 2681 4.565564 GCAAACGACCTAACACGATCTAAT 59.434 41.667 0.00 0.00 0.00 1.73
1598 2696 2.942879 TGCATCACCGCAAACGAC 59.057 55.556 0.00 0.00 43.93 4.34
1697 2797 1.280421 AGAGAACAGGAGGCATCAACC 59.720 52.381 0.00 0.00 0.00 3.77
1717 2817 5.704978 TGAACGAAAATCACATGAGGATTCA 59.295 36.000 14.60 8.01 34.02 2.57
1718 2818 6.024049 GTGAACGAAAATCACATGAGGATTC 58.976 40.000 14.60 6.62 45.13 2.52
1719 2819 5.942872 GTGAACGAAAATCACATGAGGATT 58.057 37.500 0.00 5.62 45.13 3.01
1720 2820 5.551760 GTGAACGAAAATCACATGAGGAT 57.448 39.130 0.00 0.00 45.13 3.24
1728 2828 5.409826 AGAGGATTCAGTGAACGAAAATCAC 59.590 40.000 7.96 0.00 45.94 3.06
1729 2829 5.551233 AGAGGATTCAGTGAACGAAAATCA 58.449 37.500 7.96 0.00 0.00 2.57
1730 2830 6.073003 ACAAGAGGATTCAGTGAACGAAAATC 60.073 38.462 7.96 0.33 0.00 2.17
1731 2831 5.765182 ACAAGAGGATTCAGTGAACGAAAAT 59.235 36.000 7.96 0.00 0.00 1.82
1732 2832 5.007626 CACAAGAGGATTCAGTGAACGAAAA 59.992 40.000 7.96 0.00 35.10 2.29
1733 2833 4.511454 CACAAGAGGATTCAGTGAACGAAA 59.489 41.667 7.96 0.00 35.10 3.46
1734 2834 4.058124 CACAAGAGGATTCAGTGAACGAA 58.942 43.478 7.96 0.00 35.10 3.85
1735 2835 3.320826 TCACAAGAGGATTCAGTGAACGA 59.679 43.478 7.96 0.00 37.55 3.85
1736 2836 3.653344 TCACAAGAGGATTCAGTGAACG 58.347 45.455 7.96 0.00 37.55 3.95
1737 2837 6.175712 GAATCACAAGAGGATTCAGTGAAC 57.824 41.667 7.96 2.44 46.26 3.18
1744 2844 5.123027 GTGAACAGGAATCACAAGAGGATTC 59.877 44.000 6.59 6.59 46.27 2.52
1745 2845 5.006386 GTGAACAGGAATCACAAGAGGATT 58.994 41.667 2.01 0.00 45.13 3.01
1746 2846 4.583871 GTGAACAGGAATCACAAGAGGAT 58.416 43.478 2.01 0.00 45.13 3.24
1747 2847 4.008074 GTGAACAGGAATCACAAGAGGA 57.992 45.455 2.01 0.00 45.13 3.71
1754 2854 4.583871 AGGATTCAGTGAACAGGAATCAC 58.416 43.478 7.96 6.48 45.42 3.06
1755 2855 4.533707 AGAGGATTCAGTGAACAGGAATCA 59.466 41.667 7.96 0.00 45.42 2.57
1756 2856 5.096443 AGAGGATTCAGTGAACAGGAATC 57.904 43.478 7.96 14.55 43.79 2.52
1757 2857 5.222007 ACAAGAGGATTCAGTGAACAGGAAT 60.222 40.000 7.96 0.00 34.16 3.01
1758 2858 4.103153 ACAAGAGGATTCAGTGAACAGGAA 59.897 41.667 7.96 0.00 0.00 3.36
1759 2859 3.648067 ACAAGAGGATTCAGTGAACAGGA 59.352 43.478 7.96 0.00 0.00 3.86
1760 2860 3.750130 CACAAGAGGATTCAGTGAACAGG 59.250 47.826 7.96 0.00 35.10 4.00
1761 2861 4.635223 TCACAAGAGGATTCAGTGAACAG 58.365 43.478 7.96 0.00 37.55 3.16
1762 2862 4.687901 TCACAAGAGGATTCAGTGAACA 57.312 40.909 7.96 0.00 37.55 3.18
1763 2863 6.175712 GAATCACAAGAGGATTCAGTGAAC 57.824 41.667 7.96 2.44 46.26 3.18
1786 2886 4.020751 TCACAAGAGGATTCAGAGAACAGG 60.021 45.833 0.00 0.00 0.00 4.00
1814 2914 5.551305 TCACAAGAGGATTCAGAGAACAA 57.449 39.130 0.00 0.00 0.00 2.83
1856 2957 2.908073 GCACCAAAGCCACAGGACG 61.908 63.158 0.00 0.00 0.00 4.79
1875 2976 1.779569 GACAATCGGTAGGCCATACG 58.220 55.000 5.01 6.01 34.99 3.06
1876 2977 1.068127 ACGACAATCGGTAGGCCATAC 59.932 52.381 5.01 4.57 45.59 2.39
1878 2979 0.104304 GACGACAATCGGTAGGCCAT 59.896 55.000 5.01 0.00 45.59 4.40
1879 2980 1.514087 GACGACAATCGGTAGGCCA 59.486 57.895 5.01 0.00 45.59 5.36
1880 2981 1.588139 CGACGACAATCGGTAGGCC 60.588 63.158 0.00 0.00 45.59 5.19
1881 2982 3.993103 CGACGACAATCGGTAGGC 58.007 61.111 2.97 0.00 45.59 3.93
1887 2988 1.874019 CAGAGGCCGACGACAATCG 60.874 63.158 0.00 0.00 46.93 3.34
1888 2989 0.454600 TACAGAGGCCGACGACAATC 59.545 55.000 0.00 0.00 0.00 2.67
1892 2993 2.772691 CCCTACAGAGGCCGACGAC 61.773 68.421 0.00 0.00 42.21 4.34
1900 3001 4.646492 CCAAATCCAAATTCCCTACAGAGG 59.354 45.833 0.00 0.00 43.33 3.69
1901 3002 4.098501 GCCAAATCCAAATTCCCTACAGAG 59.901 45.833 0.00 0.00 0.00 3.35
1902 3003 4.023291 GCCAAATCCAAATTCCCTACAGA 58.977 43.478 0.00 0.00 0.00 3.41
1903 3004 3.132824 GGCCAAATCCAAATTCCCTACAG 59.867 47.826 0.00 0.00 0.00 2.74
1904 3005 3.103742 GGCCAAATCCAAATTCCCTACA 58.896 45.455 0.00 0.00 0.00 2.74
1907 3008 1.203415 TGGGCCAAATCCAAATTCCCT 60.203 47.619 2.13 0.00 30.89 4.20
1917 3018 2.363359 GGATCATGAGTTGGGCCAAATC 59.637 50.000 33.45 33.45 38.66 2.17
1918 3019 2.023695 AGGATCATGAGTTGGGCCAAAT 60.024 45.455 22.82 21.70 0.00 2.32
1921 3022 0.256752 CAGGATCATGAGTTGGGCCA 59.743 55.000 0.00 0.00 0.00 5.36
1925 3026 4.418973 ACAGATCAGGATCATGAGTTGG 57.581 45.455 16.08 7.71 40.22 3.77
1927 3028 6.550938 TGTTACAGATCAGGATCATGAGTT 57.449 37.500 16.08 0.00 40.22 3.01
1928 3029 6.159299 CTGTTACAGATCAGGATCATGAGT 57.841 41.667 16.08 10.60 40.22 3.41
1938 3039 7.340122 TCATCTTAGTCCTGTTACAGATCAG 57.660 40.000 14.66 2.76 32.44 2.90
1939 3040 6.183360 GCTCATCTTAGTCCTGTTACAGATCA 60.183 42.308 14.66 0.00 32.44 2.92
1940 3041 6.212955 GCTCATCTTAGTCCTGTTACAGATC 58.787 44.000 14.66 6.32 32.44 2.75
1941 3042 5.221145 CGCTCATCTTAGTCCTGTTACAGAT 60.221 44.000 14.66 2.11 32.44 2.90
1955 3057 5.765677 AGTTCTACAGCTATCGCTCATCTTA 59.234 40.000 0.00 0.00 45.15 2.10
1970 3072 1.471676 GGATGGTGCCGAGTTCTACAG 60.472 57.143 0.00 0.00 0.00 2.74
1976 3078 0.110486 AAACAGGATGGTGCCGAGTT 59.890 50.000 0.00 0.00 27.21 3.01
1977 3079 0.321653 GAAACAGGATGGTGCCGAGT 60.322 55.000 0.00 0.00 27.21 4.18
2018 3408 7.627513 GCACTAACGAACCAAATAATCCAATGA 60.628 37.037 0.00 0.00 0.00 2.57
2025 3415 7.870445 ACATTTTGCACTAACGAACCAAATAAT 59.130 29.630 0.00 0.00 0.00 1.28
2033 3423 5.981174 TGAGTACATTTTGCACTAACGAAC 58.019 37.500 0.00 0.00 0.00 3.95
2042 3432 5.411053 TGATGTCGATTGAGTACATTTTGCA 59.589 36.000 0.00 0.00 34.09 4.08
2057 3447 6.811665 TCAAAATTACTCGAACTGATGTCGAT 59.188 34.615 0.00 0.00 35.28 3.59
2128 3541 3.526931 AGACCCATCACAGATTGTACG 57.473 47.619 0.00 0.00 0.00 3.67
2164 3577 2.232208 CAGGGCAGGGTTTCAAGATTTC 59.768 50.000 0.00 0.00 0.00 2.17
2201 3615 0.836606 TTGACTGGACAGCTGGTTCA 59.163 50.000 19.93 11.75 32.74 3.18
2206 3620 3.817084 TCAGAATTTTGACTGGACAGCTG 59.183 43.478 13.48 13.48 35.20 4.24
2242 3656 3.388345 TGGCATAACACGAACACACTA 57.612 42.857 0.00 0.00 0.00 2.74
2265 3679 0.166814 GGACAGCTCGTTCATGTTGC 59.833 55.000 0.00 0.00 0.00 4.17
2266 3680 1.462283 CTGGACAGCTCGTTCATGTTG 59.538 52.381 0.00 0.00 30.63 3.33
2267 3681 1.070758 ACTGGACAGCTCGTTCATGTT 59.929 47.619 0.00 0.00 30.63 2.71
2268 3682 0.681733 ACTGGACAGCTCGTTCATGT 59.318 50.000 0.00 0.00 30.63 3.21
2269 3683 1.337167 TGACTGGACAGCTCGTTCATG 60.337 52.381 0.00 0.00 30.63 3.07
2270 3684 0.969149 TGACTGGACAGCTCGTTCAT 59.031 50.000 0.00 0.00 30.63 2.57
2271 3685 0.750249 TTGACTGGACAGCTCGTTCA 59.250 50.000 0.00 0.00 0.00 3.18
2272 3686 1.865865 TTTGACTGGACAGCTCGTTC 58.134 50.000 0.00 0.00 0.00 3.95
2273 3687 2.325583 TTTTGACTGGACAGCTCGTT 57.674 45.000 0.00 0.00 0.00 3.85
2274 3688 2.550830 ATTTTGACTGGACAGCTCGT 57.449 45.000 0.00 0.00 0.00 4.18
2275 3689 3.070018 AGAATTTTGACTGGACAGCTCG 58.930 45.455 0.00 0.00 0.00 5.03
2276 3690 4.067896 TCAGAATTTTGACTGGACAGCTC 58.932 43.478 0.00 0.00 35.20 4.09
2277 3691 4.090761 TCAGAATTTTGACTGGACAGCT 57.909 40.909 0.00 0.00 35.20 4.24
2278 3692 4.276926 ACTTCAGAATTTTGACTGGACAGC 59.723 41.667 0.00 0.00 35.20 4.40
2279 3693 6.346919 CGTACTTCAGAATTTTGACTGGACAG 60.347 42.308 0.00 0.00 35.20 3.51
2280 3694 5.465390 CGTACTTCAGAATTTTGACTGGACA 59.535 40.000 0.00 0.00 35.20 4.02
2281 3695 5.465724 ACGTACTTCAGAATTTTGACTGGAC 59.534 40.000 0.00 1.51 35.20 4.02
2282 3696 5.607477 ACGTACTTCAGAATTTTGACTGGA 58.393 37.500 0.00 0.00 35.20 3.86
2283 3697 5.924475 ACGTACTTCAGAATTTTGACTGG 57.076 39.130 0.00 0.00 35.20 4.00
2284 3698 7.639162 ACTACGTACTTCAGAATTTTGACTG 57.361 36.000 0.00 0.00 35.72 3.51
2285 3699 9.408069 CTTACTACGTACTTCAGAATTTTGACT 57.592 33.333 0.00 0.00 0.00 3.41
2286 3700 8.160976 GCTTACTACGTACTTCAGAATTTTGAC 58.839 37.037 0.00 0.00 0.00 3.18
2287 3701 7.868922 TGCTTACTACGTACTTCAGAATTTTGA 59.131 33.333 0.00 0.00 0.00 2.69
2288 3702 7.950496 GTGCTTACTACGTACTTCAGAATTTTG 59.050 37.037 0.00 0.00 0.00 2.44
2289 3703 7.654520 TGTGCTTACTACGTACTTCAGAATTTT 59.345 33.333 0.00 0.00 0.00 1.82
2290 3704 7.149973 TGTGCTTACTACGTACTTCAGAATTT 58.850 34.615 0.00 0.00 0.00 1.82
2291 3705 6.684686 TGTGCTTACTACGTACTTCAGAATT 58.315 36.000 0.00 0.00 0.00 2.17
2292 3706 6.263516 TGTGCTTACTACGTACTTCAGAAT 57.736 37.500 0.00 0.00 0.00 2.40
2293 3707 5.694231 TGTGCTTACTACGTACTTCAGAA 57.306 39.130 0.00 0.00 0.00 3.02
2294 3708 5.892160 ATGTGCTTACTACGTACTTCAGA 57.108 39.130 0.00 0.00 0.00 3.27
2295 3709 6.687531 CACTATGTGCTTACTACGTACTTCAG 59.312 42.308 0.00 0.00 0.00 3.02
2296 3710 6.149973 ACACTATGTGCTTACTACGTACTTCA 59.850 38.462 0.00 0.00 36.98 3.02
2297 3711 6.468319 CACACTATGTGCTTACTACGTACTTC 59.532 42.308 0.00 0.00 41.89 3.01
2298 3712 6.320171 CACACTATGTGCTTACTACGTACTT 58.680 40.000 0.00 0.00 41.89 2.24
2299 3713 5.877031 CACACTATGTGCTTACTACGTACT 58.123 41.667 0.00 0.00 41.89 2.73
2313 3727 3.682858 GGCATAACACGAACACACTATGT 59.317 43.478 0.00 0.00 46.42 2.29
2314 3728 3.682377 TGGCATAACACGAACACACTATG 59.318 43.478 0.00 0.00 0.00 2.23
2315 3729 3.932822 TGGCATAACACGAACACACTAT 58.067 40.909 0.00 0.00 0.00 2.12
2316 3730 3.388345 TGGCATAACACGAACACACTA 57.612 42.857 0.00 0.00 0.00 2.74
2317 3731 2.248280 TGGCATAACACGAACACACT 57.752 45.000 0.00 0.00 0.00 3.55
2318 3732 3.296628 CTTTGGCATAACACGAACACAC 58.703 45.455 0.00 0.00 0.00 3.82
2319 3733 2.287308 GCTTTGGCATAACACGAACACA 60.287 45.455 0.00 0.00 38.54 3.72
2320 3734 2.287308 TGCTTTGGCATAACACGAACAC 60.287 45.455 0.00 0.00 44.28 3.32
2321 3735 1.950216 TGCTTTGGCATAACACGAACA 59.050 42.857 0.00 0.00 44.28 3.18
2322 3736 2.697431 TGCTTTGGCATAACACGAAC 57.303 45.000 0.00 0.00 44.28 3.95
2329 3743 8.424834 CTGAAATTCAGTGTTGCTTTGGCATAA 61.425 37.037 14.47 0.00 42.60 1.90
2330 3744 7.011312 CTGAAATTCAGTGTTGCTTTGGCATA 61.011 38.462 14.47 0.00 42.60 3.14
2331 3745 6.252014 CTGAAATTCAGTGTTGCTTTGGCAT 61.252 40.000 14.47 0.00 42.60 4.40
2332 3746 4.974584 CTGAAATTCAGTGTTGCTTTGGCA 60.975 41.667 14.47 0.00 41.99 4.92
2333 3747 3.456280 TGAAATTCAGTGTTGCTTTGGC 58.544 40.909 0.00 0.00 39.26 4.52
2446 8212 2.620251 TTGACAGAATATCCGGCTGG 57.380 50.000 4.71 4.71 34.05 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.