Multiple sequence alignment - TraesCS7D01G431200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G431200 chr7D 100.000 3010 0 0 1 3010 550552082 550555091 0.000000e+00 5559.0
1 TraesCS7D01G431200 chr7D 89.222 1837 116 32 286 2078 550462293 550464091 0.000000e+00 2220.0
2 TraesCS7D01G431200 chr7D 87.801 1205 85 29 918 2083 550800379 550801560 0.000000e+00 1354.0
3 TraesCS7D01G431200 chr7D 90.029 1033 63 15 286 1308 550642559 550643561 0.000000e+00 1301.0
4 TraesCS7D01G431200 chr7D 89.970 668 55 11 2089 2750 550464070 550464731 0.000000e+00 852.0
5 TraesCS7D01G431200 chr7D 78.966 561 35 29 342 867 550799863 550800375 3.770000e-79 305.0
6 TraesCS7D01G431200 chr7D 92.308 78 2 1 197 270 550462228 550462305 1.140000e-19 108.0
7 TraesCS7D01G431200 chr7D 92.308 78 2 1 197 270 550642494 550642571 1.140000e-19 108.0
8 TraesCS7D01G431200 chr7D 95.455 66 3 0 1312 1377 550643592 550643657 4.100000e-19 106.0
9 TraesCS7D01G431200 chr7D 82.707 133 9 10 2 125 550799621 550799748 4.100000e-19 106.0
10 TraesCS7D01G431200 chr7B 88.307 2044 106 35 123 2078 595006565 595008563 0.000000e+00 2327.0
11 TraesCS7D01G431200 chr7B 84.667 1774 140 60 396 2078 595079931 595081663 0.000000e+00 1648.0
12 TraesCS7D01G431200 chr7B 86.438 1342 103 39 786 2083 595307136 595308442 0.000000e+00 1397.0
13 TraesCS7D01G431200 chr7B 94.472 615 33 1 1465 2078 595172825 595173439 0.000000e+00 946.0
14 TraesCS7D01G431200 chr7B 81.316 1231 137 59 1 1186 595165547 595166729 0.000000e+00 913.0
15 TraesCS7D01G431200 chr7B 77.041 784 65 60 1 744 595306140 595306848 7.990000e-91 344.0
16 TraesCS7D01G431200 chr7B 88.991 109 10 2 2606 2713 595173847 595173954 1.880000e-27 134.0
17 TraesCS7D01G431200 chr7B 82.822 163 12 10 2271 2418 595008591 595008752 6.770000e-27 132.0
18 TraesCS7D01G431200 chr7B 86.957 115 13 2 2153 2266 556754141 556754254 8.760000e-26 128.0
19 TraesCS7D01G431200 chr7B 93.443 61 3 1 2089 2149 595008542 595008601 4.130000e-14 89.8
20 TraesCS7D01G431200 chr7B 91.935 62 4 1 2089 2149 595081642 595081703 5.350000e-13 86.1
21 TraesCS7D01G431200 chr7B 87.692 65 3 4 2089 2148 595173418 595173482 1.500000e-08 71.3
22 TraesCS7D01G431200 chr7A 88.457 1854 109 35 286 2078 635859663 635861472 0.000000e+00 2141.0
23 TraesCS7D01G431200 chr7A 87.250 1851 105 37 286 2078 636126220 636127997 0.000000e+00 1989.0
24 TraesCS7D01G431200 chr7A 83.006 2189 164 77 1 2059 636628020 636630130 0.000000e+00 1790.0
25 TraesCS7D01G431200 chr7A 87.704 675 60 13 2089 2755 635861451 635862110 0.000000e+00 765.0
26 TraesCS7D01G431200 chr7A 88.942 208 15 7 2281 2482 636141468 636141673 1.790000e-62 250.0
27 TraesCS7D01G431200 chr7A 81.206 282 15 17 1 270 636125977 636126232 3.060000e-45 193.0
28 TraesCS7D01G431200 chr7A 97.674 43 1 0 2089 2131 636127976 636128018 1.160000e-09 75.0
29 TraesCS7D01G431200 chr4B 87.053 587 64 9 1450 2033 14055147 14055724 0.000000e+00 652.0
30 TraesCS7D01G431200 chr4B 86.232 138 13 3 2333 2465 14055780 14055916 8.700000e-31 145.0
31 TraesCS7D01G431200 chr4B 88.596 114 13 0 2153 2266 267654182 267654069 4.050000e-29 139.0
32 TraesCS7D01G431200 chr3D 87.681 138 13 4 2333 2467 551432649 551432785 1.120000e-34 158.0
33 TraesCS7D01G431200 chr2A 89.474 114 12 0 2153 2266 627630332 627630219 8.700000e-31 145.0
34 TraesCS7D01G431200 chr1A 88.596 114 13 0 2153 2266 353914502 353914389 4.050000e-29 139.0
35 TraesCS7D01G431200 chr3A 87.719 114 14 0 2153 2266 265258828 265258941 1.880000e-27 134.0
36 TraesCS7D01G431200 chr3A 96.970 33 1 0 2614 2646 688589396 688589364 4.190000e-04 56.5
37 TraesCS7D01G431200 chr1B 87.719 114 14 0 2153 2266 228160946 228160833 1.880000e-27 134.0
38 TraesCS7D01G431200 chr1B 85.833 120 17 0 2147 2266 322480147 322480266 8.760000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G431200 chr7D 550552082 550555091 3009 False 5559.000000 5559 100.000000 1 3010 1 chr7D.!!$F1 3009
1 TraesCS7D01G431200 chr7D 550462228 550464731 2503 False 1060.000000 2220 90.500000 197 2750 3 chr7D.!!$F2 2553
2 TraesCS7D01G431200 chr7D 550799621 550801560 1939 False 588.333333 1354 83.158000 2 2083 3 chr7D.!!$F4 2081
3 TraesCS7D01G431200 chr7D 550642494 550643657 1163 False 505.000000 1301 92.597333 197 1377 3 chr7D.!!$F3 1180
4 TraesCS7D01G431200 chr7B 595165547 595166729 1182 False 913.000000 913 81.316000 1 1186 1 chr7B.!!$F2 1185
5 TraesCS7D01G431200 chr7B 595306140 595308442 2302 False 870.500000 1397 81.739500 1 2083 2 chr7B.!!$F6 2082
6 TraesCS7D01G431200 chr7B 595079931 595081703 1772 False 867.050000 1648 88.301000 396 2149 2 chr7B.!!$F4 1753
7 TraesCS7D01G431200 chr7B 595006565 595008752 2187 False 849.600000 2327 88.190667 123 2418 3 chr7B.!!$F3 2295
8 TraesCS7D01G431200 chr7B 595172825 595173954 1129 False 383.766667 946 90.385000 1465 2713 3 chr7B.!!$F5 1248
9 TraesCS7D01G431200 chr7A 636628020 636630130 2110 False 1790.000000 1790 83.006000 1 2059 1 chr7A.!!$F2 2058
10 TraesCS7D01G431200 chr7A 635859663 635862110 2447 False 1453.000000 2141 88.080500 286 2755 2 chr7A.!!$F3 2469
11 TraesCS7D01G431200 chr7A 636125977 636128018 2041 False 752.333333 1989 88.710000 1 2131 3 chr7A.!!$F4 2130
12 TraesCS7D01G431200 chr4B 14055147 14055916 769 False 398.500000 652 86.642500 1450 2465 2 chr4B.!!$F1 1015

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 579 1.299468 CCTCACCAGAGCGCGTATC 60.299 63.158 8.43 6.67 40.68 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2231 2844 0.106335 TTCGGCACCCTGTCGTTTTA 59.894 50.0 0.0 0.0 46.84 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 44 3.991121 GCGGTAGCTTTGCCAAATTAAAA 59.009 39.130 0.00 0.00 41.01 1.52
53 66 1.705873 AAAGTAGGGATCGATCGGCT 58.294 50.000 18.81 10.77 0.00 5.52
82 103 3.756434 GCACCAAAGTACAGGCAAGAATA 59.244 43.478 0.00 0.00 0.00 1.75
114 139 4.872691 GTCGATCTGTTCTCACCAAATCAT 59.127 41.667 0.00 0.00 0.00 2.45
130 160 7.912250 CACCAAATCATTTACTAGCTCATTCAC 59.088 37.037 0.00 0.00 0.00 3.18
176 212 7.278135 TCATCTCTACCTCTACGCTTTAACTA 58.722 38.462 0.00 0.00 0.00 2.24
183 219 5.181245 ACCTCTACGCTTTAACTAACGTACA 59.819 40.000 0.00 0.00 39.78 2.90
184 220 5.736358 CCTCTACGCTTTAACTAACGTACAG 59.264 44.000 0.00 0.00 39.78 2.74
185 221 6.241207 TCTACGCTTTAACTAACGTACAGT 57.759 37.500 0.00 0.00 39.78 3.55
186 222 7.359262 TCTACGCTTTAACTAACGTACAGTA 57.641 36.000 3.39 0.00 39.78 2.74
187 223 7.456253 TCTACGCTTTAACTAACGTACAGTAG 58.544 38.462 3.39 0.00 39.78 2.57
188 224 5.393962 ACGCTTTAACTAACGTACAGTAGG 58.606 41.667 3.39 0.00 36.91 3.18
189 225 5.181245 ACGCTTTAACTAACGTACAGTAGGA 59.819 40.000 7.29 0.00 36.91 2.94
190 226 5.736358 CGCTTTAACTAACGTACAGTAGGAG 59.264 44.000 7.29 0.00 0.00 3.69
191 227 6.616017 GCTTTAACTAACGTACAGTAGGAGT 58.384 40.000 7.29 0.00 0.00 3.85
192 228 7.413000 CGCTTTAACTAACGTACAGTAGGAGTA 60.413 40.741 7.29 0.00 0.00 2.59
269 321 8.798748 ATATCTCAGCACATTAAAGTACGTAC 57.201 34.615 18.10 18.10 0.00 3.67
270 322 6.263516 TCTCAGCACATTAAAGTACGTACT 57.736 37.500 22.45 22.45 38.39 2.73
344 475 3.855950 GCATGAACTTAGTACGTAACGCT 59.144 43.478 0.00 0.00 0.00 5.07
391 522 1.439679 CTCCACTAACCACGGCTTTC 58.560 55.000 0.00 0.00 0.00 2.62
442 578 2.005960 GACCTCACCAGAGCGCGTAT 62.006 60.000 8.43 0.00 40.68 3.06
443 579 1.299468 CCTCACCAGAGCGCGTATC 60.299 63.158 8.43 6.67 40.68 2.24
444 580 1.299468 CTCACCAGAGCGCGTATCC 60.299 63.158 8.43 0.00 34.61 2.59
445 581 2.655364 CACCAGAGCGCGTATCCG 60.655 66.667 8.43 0.00 37.07 4.18
573 754 7.241042 ACTAACGATACAGTATATGGCCAAT 57.759 36.000 10.96 7.63 0.00 3.16
612 796 3.543680 AGTCAACCGATCGATGGAATT 57.456 42.857 18.66 6.10 0.00 2.17
615 799 3.374058 GTCAACCGATCGATGGAATTGTT 59.626 43.478 18.66 6.49 0.00 2.83
632 818 4.697756 TGGGAACGGAAGCCAGCG 62.698 66.667 0.00 0.00 0.00 5.18
876 1355 2.310930 TTTCTTTGCCACCCTGCCCT 62.311 55.000 0.00 0.00 0.00 5.19
928 1408 2.380932 TCCCACCACCTCTGACTAACTA 59.619 50.000 0.00 0.00 0.00 2.24
1308 1804 3.626924 ACCAAGAAGCGGAGGCGT 61.627 61.111 0.00 0.00 46.35 5.68
1309 1805 2.280552 ACCAAGAAGCGGAGGCGTA 61.281 57.895 0.00 0.00 46.35 4.42
1413 1955 0.110238 TCGATGCTTTGCGTTTCAGC 60.110 50.000 0.00 0.00 37.71 4.26
1416 1958 0.675633 ATGCTTTGCGTTTCAGCCTT 59.324 45.000 0.00 0.00 36.02 4.35
1417 1959 0.459489 TGCTTTGCGTTTCAGCCTTT 59.541 45.000 0.00 0.00 36.02 3.11
1418 1960 1.678627 TGCTTTGCGTTTCAGCCTTTA 59.321 42.857 0.00 0.00 36.02 1.85
1419 1961 2.099921 TGCTTTGCGTTTCAGCCTTTAA 59.900 40.909 0.00 0.00 36.02 1.52
1420 1962 3.243704 TGCTTTGCGTTTCAGCCTTTAAT 60.244 39.130 0.00 0.00 36.02 1.40
1421 1963 3.740832 GCTTTGCGTTTCAGCCTTTAATT 59.259 39.130 0.00 0.00 36.02 1.40
1422 1964 4.211164 GCTTTGCGTTTCAGCCTTTAATTT 59.789 37.500 0.00 0.00 36.02 1.82
1423 1965 5.612492 GCTTTGCGTTTCAGCCTTTAATTTC 60.612 40.000 0.00 0.00 36.02 2.17
1424 1966 4.846779 TGCGTTTCAGCCTTTAATTTCT 57.153 36.364 0.00 0.00 36.02 2.52
1425 1967 5.950758 TGCGTTTCAGCCTTTAATTTCTA 57.049 34.783 0.00 0.00 36.02 2.10
1426 1968 5.695818 TGCGTTTCAGCCTTTAATTTCTAC 58.304 37.500 0.00 0.00 36.02 2.59
1427 1969 5.472137 TGCGTTTCAGCCTTTAATTTCTACT 59.528 36.000 0.00 0.00 36.02 2.57
1428 1970 6.651643 TGCGTTTCAGCCTTTAATTTCTACTA 59.348 34.615 0.00 0.00 36.02 1.82
1429 1971 7.148474 TGCGTTTCAGCCTTTAATTTCTACTAG 60.148 37.037 0.00 0.00 36.02 2.57
1430 1972 7.180748 CGTTTCAGCCTTTAATTTCTACTAGC 58.819 38.462 0.00 0.00 0.00 3.42
1431 1973 7.064728 CGTTTCAGCCTTTAATTTCTACTAGCT 59.935 37.037 0.00 0.00 0.00 3.32
1432 1974 8.731605 GTTTCAGCCTTTAATTTCTACTAGCTT 58.268 33.333 0.00 0.00 0.00 3.74
1433 1975 8.863872 TTCAGCCTTTAATTTCTACTAGCTTT 57.136 30.769 0.00 0.00 0.00 3.51
1434 1976 8.863872 TCAGCCTTTAATTTCTACTAGCTTTT 57.136 30.769 0.00 0.00 0.00 2.27
1435 1977 8.730680 TCAGCCTTTAATTTCTACTAGCTTTTG 58.269 33.333 0.00 0.00 0.00 2.44
1485 2063 1.305219 TATGTGGACTGCTTTGGCGC 61.305 55.000 0.00 0.00 42.25 6.53
2058 2669 6.751888 CGACATTTTGTTTCCTTCTCAAACTT 59.248 34.615 0.00 0.00 35.19 2.66
2059 2670 7.913297 CGACATTTTGTTTCCTTCTCAAACTTA 59.087 33.333 0.00 0.00 35.19 2.24
2060 2671 8.926715 ACATTTTGTTTCCTTCTCAAACTTAC 57.073 30.769 0.00 0.00 35.19 2.34
2061 2672 7.979537 ACATTTTGTTTCCTTCTCAAACTTACC 59.020 33.333 0.00 0.00 35.19 2.85
2062 2673 7.469537 TTTTGTTTCCTTCTCAAACTTACCA 57.530 32.000 0.00 0.00 35.19 3.25
2063 2674 6.693315 TTGTTTCCTTCTCAAACTTACCAG 57.307 37.500 0.00 0.00 35.19 4.00
2064 2675 5.751586 TGTTTCCTTCTCAAACTTACCAGT 58.248 37.500 0.00 0.00 35.19 4.00
2065 2676 5.588648 TGTTTCCTTCTCAAACTTACCAGTG 59.411 40.000 0.00 0.00 35.19 3.66
2066 2677 5.367945 TTCCTTCTCAAACTTACCAGTGT 57.632 39.130 0.00 0.00 31.60 3.55
2067 2678 4.957296 TCCTTCTCAAACTTACCAGTGTC 58.043 43.478 0.00 0.00 31.60 3.67
2068 2679 3.741344 CCTTCTCAAACTTACCAGTGTCG 59.259 47.826 0.00 0.00 31.60 4.35
2069 2680 4.500887 CCTTCTCAAACTTACCAGTGTCGA 60.501 45.833 0.00 0.00 31.60 4.20
2070 2681 4.866508 TCTCAAACTTACCAGTGTCGAT 57.133 40.909 0.00 0.00 31.60 3.59
2071 2682 5.209818 TCTCAAACTTACCAGTGTCGATT 57.790 39.130 0.00 0.00 31.60 3.34
2072 2683 5.607477 TCTCAAACTTACCAGTGTCGATTT 58.393 37.500 0.00 0.00 31.60 2.17
2073 2684 6.053005 TCTCAAACTTACCAGTGTCGATTTT 58.947 36.000 0.00 0.00 31.60 1.82
2074 2685 7.211573 TCTCAAACTTACCAGTGTCGATTTTA 58.788 34.615 0.00 0.00 31.60 1.52
2075 2686 7.876068 TCTCAAACTTACCAGTGTCGATTTTAT 59.124 33.333 0.00 0.00 31.60 1.40
2076 2687 8.385898 TCAAACTTACCAGTGTCGATTTTATT 57.614 30.769 0.00 0.00 31.60 1.40
2077 2688 8.842280 TCAAACTTACCAGTGTCGATTTTATTT 58.158 29.630 0.00 0.00 31.60 1.40
2078 2689 9.458374 CAAACTTACCAGTGTCGATTTTATTTT 57.542 29.630 0.00 0.00 31.60 1.82
2153 2766 0.443869 CTTGATGTTGACGGGAAGCG 59.556 55.000 0.00 0.00 0.00 4.68
2154 2767 0.953471 TTGATGTTGACGGGAAGCGG 60.953 55.000 0.00 0.00 0.00 5.52
2155 2768 1.375523 GATGTTGACGGGAAGCGGT 60.376 57.895 0.00 0.00 0.00 5.68
2156 2769 0.953960 GATGTTGACGGGAAGCGGTT 60.954 55.000 0.00 0.00 0.00 4.44
2157 2770 0.953960 ATGTTGACGGGAAGCGGTTC 60.954 55.000 18.86 18.86 0.00 3.62
2197 2810 1.855213 CGTTGGGCCACTGACATGTG 61.855 60.000 5.23 0.00 37.66 3.21
2203 2816 3.991999 CACTGACATGTGGGCCAG 58.008 61.111 6.40 6.93 34.56 4.85
2204 2817 1.676635 CACTGACATGTGGGCCAGG 60.677 63.158 6.40 1.59 34.56 4.45
2205 2818 2.156098 ACTGACATGTGGGCCAGGT 61.156 57.895 6.40 5.66 41.63 4.00
2206 2819 1.075482 CTGACATGTGGGCCAGGTT 59.925 57.895 6.40 0.00 38.40 3.50
2207 2820 0.540365 CTGACATGTGGGCCAGGTTT 60.540 55.000 6.40 0.00 38.40 3.27
2208 2821 0.105760 TGACATGTGGGCCAGGTTTT 60.106 50.000 6.40 0.00 38.40 2.43
2209 2822 0.603065 GACATGTGGGCCAGGTTTTC 59.397 55.000 6.40 0.00 38.40 2.29
2210 2823 0.105760 ACATGTGGGCCAGGTTTTCA 60.106 50.000 6.40 0.00 33.45 2.69
2211 2824 1.047002 CATGTGGGCCAGGTTTTCAA 58.953 50.000 6.40 0.00 0.00 2.69
2212 2825 1.047801 ATGTGGGCCAGGTTTTCAAC 58.952 50.000 6.40 0.00 0.00 3.18
2213 2826 1.362355 GTGGGCCAGGTTTTCAACG 59.638 57.895 6.40 0.00 0.00 4.10
2214 2827 1.830408 TGGGCCAGGTTTTCAACGG 60.830 57.895 0.00 0.00 0.00 4.44
2215 2828 2.570284 GGGCCAGGTTTTCAACGGG 61.570 63.158 4.39 0.00 0.00 5.28
2216 2829 2.338620 GCCAGGTTTTCAACGGGC 59.661 61.111 5.51 5.51 42.56 6.13
2217 2830 3.047735 CCAGGTTTTCAACGGGCC 58.952 61.111 0.00 0.00 0.00 5.80
2218 2831 2.570284 CCAGGTTTTCAACGGGCCC 61.570 63.158 13.57 13.57 0.00 5.80
2219 2832 1.830408 CAGGTTTTCAACGGGCCCA 60.830 57.895 24.92 0.00 0.00 5.36
2220 2833 1.830847 AGGTTTTCAACGGGCCCAC 60.831 57.895 24.92 10.41 0.00 4.61
2221 2834 2.128507 GGTTTTCAACGGGCCCACA 61.129 57.895 24.92 0.00 0.00 4.17
2222 2835 1.468506 GGTTTTCAACGGGCCCACAT 61.469 55.000 24.92 2.81 0.00 3.21
2223 2836 0.319469 GTTTTCAACGGGCCCACATG 60.319 55.000 24.92 17.17 0.00 3.21
2224 2837 0.757188 TTTTCAACGGGCCCACATGT 60.757 50.000 24.92 8.68 0.00 3.21
2225 2838 1.175983 TTTCAACGGGCCCACATGTC 61.176 55.000 24.92 0.00 0.00 3.06
2226 2839 2.282110 CAACGGGCCCACATGTCA 60.282 61.111 24.92 0.00 0.00 3.58
2227 2840 2.034066 AACGGGCCCACATGTCAG 59.966 61.111 24.92 4.83 0.00 3.51
2228 2841 2.829384 AACGGGCCCACATGTCAGT 61.829 57.895 24.92 5.61 0.00 3.41
2229 2842 2.747460 CGGGCCCACATGTCAGTG 60.747 66.667 24.92 0.00 39.21 3.66
2239 2852 4.128554 CACATGTCAGTGGTAAAACGAC 57.871 45.455 0.00 0.00 35.88 4.34
2240 2853 3.558006 CACATGTCAGTGGTAAAACGACA 59.442 43.478 0.00 0.00 37.70 4.35
2241 2854 3.807622 ACATGTCAGTGGTAAAACGACAG 59.192 43.478 0.00 0.00 37.18 3.51
2242 2855 2.828877 TGTCAGTGGTAAAACGACAGG 58.171 47.619 0.00 0.00 33.16 4.00
2243 2856 2.140717 GTCAGTGGTAAAACGACAGGG 58.859 52.381 0.00 0.00 0.00 4.45
2244 2857 1.764134 TCAGTGGTAAAACGACAGGGT 59.236 47.619 0.00 0.00 0.00 4.34
2245 2858 1.871039 CAGTGGTAAAACGACAGGGTG 59.129 52.381 0.00 0.00 0.00 4.61
2246 2859 0.589708 GTGGTAAAACGACAGGGTGC 59.410 55.000 0.00 0.00 0.00 5.01
2247 2860 0.535553 TGGTAAAACGACAGGGTGCC 60.536 55.000 0.00 0.00 0.00 5.01
2248 2861 1.571215 GGTAAAACGACAGGGTGCCG 61.571 60.000 0.00 0.00 0.00 5.69
2249 2862 0.600782 GTAAAACGACAGGGTGCCGA 60.601 55.000 0.00 0.00 0.00 5.54
2250 2863 0.106335 TAAAACGACAGGGTGCCGAA 59.894 50.000 0.00 0.00 0.00 4.30
2251 2864 1.441732 AAAACGACAGGGTGCCGAAC 61.442 55.000 0.00 0.00 0.00 3.95
2252 2865 4.657824 ACGACAGGGTGCCGAACG 62.658 66.667 0.00 0.00 0.00 3.95
2254 2867 4.309950 GACAGGGTGCCGAACGGT 62.310 66.667 14.63 0.00 37.65 4.83
2255 2868 2.918802 ACAGGGTGCCGAACGGTA 60.919 61.111 14.63 7.54 37.65 4.02
2256 2869 2.125673 CAGGGTGCCGAACGGTAG 60.126 66.667 14.63 0.00 37.65 3.18
2257 2870 2.283388 AGGGTGCCGAACGGTAGA 60.283 61.111 14.63 0.00 37.65 2.59
2258 2871 2.183555 GGGTGCCGAACGGTAGAG 59.816 66.667 14.63 0.00 37.65 2.43
2259 2872 2.643232 GGGTGCCGAACGGTAGAGT 61.643 63.158 14.63 0.00 37.65 3.24
2260 2873 1.315257 GGGTGCCGAACGGTAGAGTA 61.315 60.000 14.63 0.00 37.65 2.59
2261 2874 0.743097 GGTGCCGAACGGTAGAGTAT 59.257 55.000 14.63 0.00 37.65 2.12
2262 2875 1.268948 GGTGCCGAACGGTAGAGTATC 60.269 57.143 14.63 0.00 37.65 2.24
2263 2876 1.027357 TGCCGAACGGTAGAGTATCC 58.973 55.000 14.63 0.00 37.65 2.59
2264 2877 1.316651 GCCGAACGGTAGAGTATCCT 58.683 55.000 14.63 0.00 37.65 3.24
2265 2878 1.266446 GCCGAACGGTAGAGTATCCTC 59.734 57.143 14.63 0.00 36.38 3.71
2266 2879 1.878734 CCGAACGGTAGAGTATCCTCC 59.121 57.143 4.99 0.00 38.58 4.30
2267 2880 2.486907 CCGAACGGTAGAGTATCCTCCT 60.487 54.545 4.99 0.00 38.58 3.69
2268 2881 2.807392 CGAACGGTAGAGTATCCTCCTC 59.193 54.545 0.00 0.00 38.58 3.71
2269 2882 2.955342 ACGGTAGAGTATCCTCCTCC 57.045 55.000 0.00 0.00 38.58 4.30
2277 2890 4.889780 AGAGTATCCTCCTCCTTGTTGAT 58.110 43.478 0.00 0.00 38.58 2.57
2304 3050 5.087323 GGTGATAGATAGGAGGATGGTTGA 58.913 45.833 0.00 0.00 0.00 3.18
2305 3051 5.723887 GGTGATAGATAGGAGGATGGTTGAT 59.276 44.000 0.00 0.00 0.00 2.57
2318 3072 7.768120 GGAGGATGGTTGATTGACATAGATATC 59.232 40.741 0.00 0.00 0.00 1.63
2328 3091 9.813826 TGATTGACATAGATATCAGAGGACTTA 57.186 33.333 5.32 0.00 0.00 2.24
2383 3149 7.999679 TCCTAAAGCTATTGGATCAATTGTTG 58.000 34.615 5.13 0.00 35.54 3.33
2489 3260 1.601166 GTGTCTAAGGGTTTTGCGGT 58.399 50.000 0.00 0.00 0.00 5.68
2498 3269 0.034863 GGTTTTGCGGTAGGGGATGA 60.035 55.000 0.00 0.00 0.00 2.92
2524 3295 2.158813 GCGGGTCAAAGATAGGAATCCA 60.159 50.000 0.61 0.00 31.98 3.41
2529 3300 6.368805 GGGTCAAAGATAGGAATCCAATTCT 58.631 40.000 0.61 0.00 39.24 2.40
2603 3420 4.381398 GCAAAAGGTTGGTTGCCAAAATTT 60.381 37.500 1.79 4.39 45.73 1.82
2611 3428 6.254480 GTTGGTTGCCAAAATTTAAACTGTG 58.746 36.000 1.79 0.00 45.73 3.66
2683 3501 4.214545 TGTTGCCTAAATTCGTACAACCAG 59.785 41.667 10.18 0.00 37.25 4.00
2691 3509 9.537192 CCTAAATTCGTACAACCAGATATACAA 57.463 33.333 0.00 0.00 0.00 2.41
2727 3545 9.091220 ACTTATAAGGACCTATATCTGTTGTCC 57.909 37.037 16.73 0.00 44.64 4.02
2728 3546 9.090103 CTTATAAGGACCTATATCTGTTGTCCA 57.910 37.037 4.42 0.00 46.29 4.02
2729 3547 7.931015 ATAAGGACCTATATCTGTTGTCCAA 57.069 36.000 9.42 0.00 46.29 3.53
2730 3548 6.831664 AAGGACCTATATCTGTTGTCCAAT 57.168 37.500 9.42 0.00 46.29 3.16
2731 3549 6.426646 AGGACCTATATCTGTTGTCCAATC 57.573 41.667 9.42 0.00 46.29 2.67
2732 3550 5.905331 AGGACCTATATCTGTTGTCCAATCA 59.095 40.000 9.42 0.00 46.29 2.57
2734 3552 5.930135 ACCTATATCTGTTGTCCAATCACC 58.070 41.667 0.00 0.00 0.00 4.02
2760 3582 4.787280 AGGGAGGTCCTCTGGGCG 62.787 72.222 18.58 0.00 44.06 6.13
2761 3583 4.779733 GGGAGGTCCTCTGGGCGA 62.780 72.222 18.58 0.00 35.95 5.54
2762 3584 2.683933 GGAGGTCCTCTGGGCGAA 60.684 66.667 18.58 0.00 0.00 4.70
2763 3585 2.579738 GAGGTCCTCTGGGCGAAC 59.420 66.667 12.02 0.00 0.00 3.95
2764 3586 3.358076 GAGGTCCTCTGGGCGAACG 62.358 68.421 12.02 0.00 0.00 3.95
2765 3587 3.692406 GGTCCTCTGGGCGAACGT 61.692 66.667 0.00 0.00 0.00 3.99
2766 3588 2.342648 GTCCTCTGGGCGAACGTT 59.657 61.111 0.00 0.00 0.00 3.99
2767 3589 1.301479 GTCCTCTGGGCGAACGTTT 60.301 57.895 0.46 0.00 0.00 3.60
2768 3590 1.005394 TCCTCTGGGCGAACGTTTC 60.005 57.895 0.46 0.00 0.00 2.78
2769 3591 2.033194 CCTCTGGGCGAACGTTTCC 61.033 63.158 0.46 7.13 0.00 3.13
2770 3592 2.031465 TCTGGGCGAACGTTTCCC 59.969 61.111 24.56 24.56 40.47 3.97
2771 3593 3.053896 CTGGGCGAACGTTTCCCC 61.054 66.667 26.79 25.04 39.30 4.81
2772 3594 4.646877 TGGGCGAACGTTTCCCCC 62.647 66.667 26.79 23.11 46.09 5.40
2773 3595 4.646877 GGGCGAACGTTTCCCCCA 62.647 66.667 22.17 0.00 45.37 4.96
2774 3596 2.360726 GGCGAACGTTTCCCCCAT 60.361 61.111 0.46 0.00 0.00 4.00
2775 3597 1.974875 GGCGAACGTTTCCCCCATT 60.975 57.895 0.46 0.00 0.00 3.16
2776 3598 1.504900 GCGAACGTTTCCCCCATTC 59.495 57.895 0.46 0.00 0.00 2.67
2777 3599 1.791662 CGAACGTTTCCCCCATTCG 59.208 57.895 0.46 0.00 36.56 3.34
2778 3600 0.671163 CGAACGTTTCCCCCATTCGA 60.671 55.000 0.46 0.00 43.66 3.71
2779 3601 0.800631 GAACGTTTCCCCCATTCGAC 59.199 55.000 0.46 0.00 0.00 4.20
2780 3602 0.108963 AACGTTTCCCCCATTCGACA 59.891 50.000 0.00 0.00 0.00 4.35
2781 3603 0.321298 ACGTTTCCCCCATTCGACAG 60.321 55.000 0.00 0.00 0.00 3.51
2782 3604 1.644786 CGTTTCCCCCATTCGACAGC 61.645 60.000 0.00 0.00 0.00 4.40
2783 3605 1.376683 TTTCCCCCATTCGACAGCG 60.377 57.895 0.00 0.00 39.35 5.18
2784 3606 2.813226 TTTCCCCCATTCGACAGCGG 62.813 60.000 0.00 0.00 38.28 5.52
2785 3607 4.856801 CCCCCATTCGACAGCGGG 62.857 72.222 0.00 0.00 38.28 6.13
2786 3608 3.781307 CCCCATTCGACAGCGGGA 61.781 66.667 8.80 0.00 41.62 5.14
2787 3609 2.202932 CCCATTCGACAGCGGGAG 60.203 66.667 2.13 0.00 41.62 4.30
2788 3610 2.202932 CCATTCGACAGCGGGAGG 60.203 66.667 0.00 0.00 38.28 4.30
2789 3611 2.202932 CATTCGACAGCGGGAGGG 60.203 66.667 0.00 0.00 38.28 4.30
2790 3612 4.162690 ATTCGACAGCGGGAGGGC 62.163 66.667 0.00 0.00 38.28 5.19
2794 3616 4.864334 GACAGCGGGAGGGCCATG 62.864 72.222 6.18 0.00 35.15 3.66
2801 3623 4.380945 GGAGGGCCATGGCAACCA 62.381 66.667 36.56 0.00 44.11 3.67
2802 3624 3.070576 GAGGGCCATGGCAACCAC 61.071 66.667 36.56 23.67 44.11 4.16
2803 3625 4.702274 AGGGCCATGGCAACCACC 62.702 66.667 36.56 27.01 44.11 4.61
2805 3627 3.384532 GGCCATGGCAACCACCAG 61.385 66.667 36.56 0.00 44.71 4.00
2806 3628 2.601367 GCCATGGCAACCACCAGT 60.601 61.111 32.08 0.00 44.71 4.00
2807 3629 2.209315 GCCATGGCAACCACCAGTT 61.209 57.895 32.08 0.00 44.71 3.16
2808 3630 1.966762 CCATGGCAACCACCAGTTC 59.033 57.895 0.00 0.00 44.71 3.01
2809 3631 1.535204 CCATGGCAACCACCAGTTCC 61.535 60.000 0.00 0.00 44.71 3.62
2810 3632 0.540365 CATGGCAACCACCAGTTCCT 60.540 55.000 0.00 0.00 44.71 3.36
2811 3633 0.251341 ATGGCAACCACCAGTTCCTC 60.251 55.000 0.00 0.00 44.71 3.71
2812 3634 1.150536 GGCAACCACCAGTTCCTCA 59.849 57.895 0.00 0.00 36.18 3.86
2813 3635 0.467290 GGCAACCACCAGTTCCTCAA 60.467 55.000 0.00 0.00 36.18 3.02
2814 3636 1.398692 GCAACCACCAGTTCCTCAAA 58.601 50.000 0.00 0.00 36.18 2.69
2815 3637 1.338020 GCAACCACCAGTTCCTCAAAG 59.662 52.381 0.00 0.00 36.18 2.77
2816 3638 1.956477 CAACCACCAGTTCCTCAAAGG 59.044 52.381 0.00 0.00 36.18 3.11
2817 3639 1.222567 ACCACCAGTTCCTCAAAGGT 58.777 50.000 0.00 0.00 36.53 3.50
2818 3640 1.143073 ACCACCAGTTCCTCAAAGGTC 59.857 52.381 0.00 0.00 36.53 3.85
2819 3641 1.545651 CCACCAGTTCCTCAAAGGTCC 60.546 57.143 0.00 0.00 36.53 4.46
2820 3642 1.142870 CACCAGTTCCTCAAAGGTCCA 59.857 52.381 0.00 0.00 36.53 4.02
2821 3643 1.143073 ACCAGTTCCTCAAAGGTCCAC 59.857 52.381 0.00 0.00 36.53 4.02
2822 3644 1.421646 CCAGTTCCTCAAAGGTCCACT 59.578 52.381 0.00 0.00 36.53 4.00
2823 3645 2.637872 CCAGTTCCTCAAAGGTCCACTA 59.362 50.000 0.00 0.00 36.53 2.74
2824 3646 3.072476 CCAGTTCCTCAAAGGTCCACTAA 59.928 47.826 0.00 0.00 36.53 2.24
2825 3647 4.445735 CCAGTTCCTCAAAGGTCCACTAAA 60.446 45.833 0.00 0.00 36.53 1.85
2826 3648 5.316987 CAGTTCCTCAAAGGTCCACTAAAT 58.683 41.667 0.00 0.00 36.53 1.40
2827 3649 6.472887 CAGTTCCTCAAAGGTCCACTAAATA 58.527 40.000 0.00 0.00 36.53 1.40
2828 3650 6.595716 CAGTTCCTCAAAGGTCCACTAAATAG 59.404 42.308 0.00 0.00 36.53 1.73
2829 3651 5.693769 TCCTCAAAGGTCCACTAAATAGG 57.306 43.478 0.00 0.00 36.53 2.57
2830 3652 5.098663 TCCTCAAAGGTCCACTAAATAGGT 58.901 41.667 0.00 0.00 36.53 3.08
2831 3653 5.550403 TCCTCAAAGGTCCACTAAATAGGTT 59.450 40.000 0.00 0.00 36.53 3.50
2832 3654 6.045106 TCCTCAAAGGTCCACTAAATAGGTTT 59.955 38.462 0.00 0.00 36.53 3.27
2833 3655 6.719829 CCTCAAAGGTCCACTAAATAGGTTTT 59.280 38.462 0.00 0.00 0.00 2.43
2834 3656 7.094334 CCTCAAAGGTCCACTAAATAGGTTTTC 60.094 40.741 0.00 0.00 0.00 2.29
2835 3657 7.523415 TCAAAGGTCCACTAAATAGGTTTTCT 58.477 34.615 0.00 0.00 0.00 2.52
2836 3658 8.002459 TCAAAGGTCCACTAAATAGGTTTTCTT 58.998 33.333 0.00 0.00 0.00 2.52
2837 3659 9.292195 CAAAGGTCCACTAAATAGGTTTTCTTA 57.708 33.333 0.00 0.00 0.00 2.10
2838 3660 9.516546 AAAGGTCCACTAAATAGGTTTTCTTAG 57.483 33.333 0.00 0.00 0.00 2.18
2839 3661 8.445361 AGGTCCACTAAATAGGTTTTCTTAGA 57.555 34.615 0.00 0.00 0.00 2.10
2840 3662 8.887393 AGGTCCACTAAATAGGTTTTCTTAGAA 58.113 33.333 0.00 0.00 0.00 2.10
2841 3663 8.944029 GGTCCACTAAATAGGTTTTCTTAGAAC 58.056 37.037 0.00 0.00 0.00 3.01
2842 3664 9.498176 GTCCACTAAATAGGTTTTCTTAGAACA 57.502 33.333 0.00 0.00 0.00 3.18
2845 3667 9.774742 CACTAAATAGGTTTTCTTAGAACATGC 57.225 33.333 0.00 0.00 0.00 4.06
2846 3668 8.957466 ACTAAATAGGTTTTCTTAGAACATGCC 58.043 33.333 0.00 0.00 0.00 4.40
2847 3669 7.775053 AAATAGGTTTTCTTAGAACATGCCA 57.225 32.000 0.00 0.00 0.00 4.92
2848 3670 7.961326 AATAGGTTTTCTTAGAACATGCCAT 57.039 32.000 0.00 0.00 0.00 4.40
2849 3671 5.649782 AGGTTTTCTTAGAACATGCCATG 57.350 39.130 2.40 2.40 0.00 3.66
2850 3672 5.324409 AGGTTTTCTTAGAACATGCCATGA 58.676 37.500 12.53 0.00 0.00 3.07
2851 3673 5.774690 AGGTTTTCTTAGAACATGCCATGAA 59.225 36.000 12.53 0.00 0.00 2.57
2852 3674 5.863935 GGTTTTCTTAGAACATGCCATGAAC 59.136 40.000 12.53 4.82 0.00 3.18
2853 3675 6.446318 GTTTTCTTAGAACATGCCATGAACA 58.554 36.000 12.53 0.00 0.00 3.18
2854 3676 6.647334 TTTCTTAGAACATGCCATGAACAA 57.353 33.333 12.53 0.00 0.00 2.83
2855 3677 6.647334 TTCTTAGAACATGCCATGAACAAA 57.353 33.333 12.53 0.00 0.00 2.83
2856 3678 6.647334 TCTTAGAACATGCCATGAACAAAA 57.353 33.333 12.53 3.41 0.00 2.44
2857 3679 7.048629 TCTTAGAACATGCCATGAACAAAAA 57.951 32.000 12.53 0.00 0.00 1.94
2858 3680 7.669427 TCTTAGAACATGCCATGAACAAAAAT 58.331 30.769 12.53 0.00 0.00 1.82
2859 3681 7.814107 TCTTAGAACATGCCATGAACAAAAATC 59.186 33.333 12.53 0.00 0.00 2.17
2860 3682 5.856156 AGAACATGCCATGAACAAAAATCA 58.144 33.333 12.53 0.00 0.00 2.57
2861 3683 5.929992 AGAACATGCCATGAACAAAAATCAG 59.070 36.000 12.53 0.00 0.00 2.90
2862 3684 5.471556 ACATGCCATGAACAAAAATCAGA 57.528 34.783 12.53 0.00 0.00 3.27
2863 3685 5.856156 ACATGCCATGAACAAAAATCAGAA 58.144 33.333 12.53 0.00 0.00 3.02
2864 3686 6.289834 ACATGCCATGAACAAAAATCAGAAA 58.710 32.000 12.53 0.00 0.00 2.52
2865 3687 6.766944 ACATGCCATGAACAAAAATCAGAAAA 59.233 30.769 12.53 0.00 0.00 2.29
2866 3688 7.446013 ACATGCCATGAACAAAAATCAGAAAAT 59.554 29.630 12.53 0.00 0.00 1.82
2867 3689 7.192148 TGCCATGAACAAAAATCAGAAAATG 57.808 32.000 0.00 0.00 0.00 2.32
2868 3690 6.990939 TGCCATGAACAAAAATCAGAAAATGA 59.009 30.769 0.00 0.00 43.70 2.57
2869 3691 7.498239 TGCCATGAACAAAAATCAGAAAATGAA 59.502 29.630 0.00 0.00 42.53 2.57
2870 3692 8.344098 GCCATGAACAAAAATCAGAAAATGAAA 58.656 29.630 0.00 0.00 42.53 2.69
2895 3717 8.449251 AAAAATGCCACAAAAGTTGTCATATT 57.551 26.923 0.00 0.00 43.23 1.28
2896 3718 9.553064 AAAAATGCCACAAAAGTTGTCATATTA 57.447 25.926 0.00 0.00 43.23 0.98
2897 3719 9.723601 AAAATGCCACAAAAGTTGTCATATTAT 57.276 25.926 0.00 0.00 43.23 1.28
2898 3720 9.723601 AAATGCCACAAAAGTTGTCATATTATT 57.276 25.926 0.00 0.00 43.23 1.40
2901 3723 9.019656 TGCCACAAAAGTTGTCATATTATTAGT 57.980 29.630 0.00 0.00 43.23 2.24
2902 3724 9.503427 GCCACAAAAGTTGTCATATTATTAGTC 57.497 33.333 0.00 0.00 43.23 2.59
2908 3730 8.732746 AAGTTGTCATATTATTAGTCACCACC 57.267 34.615 0.00 0.00 0.00 4.61
2909 3731 7.280356 AGTTGTCATATTATTAGTCACCACCC 58.720 38.462 0.00 0.00 0.00 4.61
2910 3732 6.816616 TGTCATATTATTAGTCACCACCCA 57.183 37.500 0.00 0.00 0.00 4.51
2911 3733 7.201702 TGTCATATTATTAGTCACCACCCAA 57.798 36.000 0.00 0.00 0.00 4.12
2912 3734 7.634718 TGTCATATTATTAGTCACCACCCAAA 58.365 34.615 0.00 0.00 0.00 3.28
2913 3735 8.110271 TGTCATATTATTAGTCACCACCCAAAA 58.890 33.333 0.00 0.00 0.00 2.44
2914 3736 8.962679 GTCATATTATTAGTCACCACCCAAAAA 58.037 33.333 0.00 0.00 0.00 1.94
2951 3773 7.755582 AGAAAGTGTCAGTAAACAAAAATGC 57.244 32.000 0.00 0.00 0.00 3.56
2952 3774 6.756542 AGAAAGTGTCAGTAAACAAAAATGCC 59.243 34.615 0.00 0.00 0.00 4.40
2953 3775 5.590530 AGTGTCAGTAAACAAAAATGCCA 57.409 34.783 0.00 0.00 0.00 4.92
2954 3776 5.348164 AGTGTCAGTAAACAAAAATGCCAC 58.652 37.500 0.00 0.00 0.00 5.01
2955 3777 4.506288 GTGTCAGTAAACAAAAATGCCACC 59.494 41.667 0.00 0.00 0.00 4.61
2956 3778 4.404073 TGTCAGTAAACAAAAATGCCACCT 59.596 37.500 0.00 0.00 0.00 4.00
2957 3779 4.982295 GTCAGTAAACAAAAATGCCACCTC 59.018 41.667 0.00 0.00 0.00 3.85
2958 3780 4.892934 TCAGTAAACAAAAATGCCACCTCT 59.107 37.500 0.00 0.00 0.00 3.69
2959 3781 5.009610 TCAGTAAACAAAAATGCCACCTCTC 59.990 40.000 0.00 0.00 0.00 3.20
2960 3782 4.892934 AGTAAACAAAAATGCCACCTCTCA 59.107 37.500 0.00 0.00 0.00 3.27
2961 3783 4.751767 AAACAAAAATGCCACCTCTCAA 57.248 36.364 0.00 0.00 0.00 3.02
2962 3784 4.961438 AACAAAAATGCCACCTCTCAAT 57.039 36.364 0.00 0.00 0.00 2.57
2963 3785 6.418057 AAACAAAAATGCCACCTCTCAATA 57.582 33.333 0.00 0.00 0.00 1.90
2964 3786 6.610075 AACAAAAATGCCACCTCTCAATAT 57.390 33.333 0.00 0.00 0.00 1.28
2965 3787 6.610075 ACAAAAATGCCACCTCTCAATATT 57.390 33.333 0.00 0.00 0.00 1.28
2966 3788 7.716799 ACAAAAATGCCACCTCTCAATATTA 57.283 32.000 0.00 0.00 0.00 0.98
2967 3789 8.133024 ACAAAAATGCCACCTCTCAATATTAA 57.867 30.769 0.00 0.00 0.00 1.40
2968 3790 8.592809 ACAAAAATGCCACCTCTCAATATTAAA 58.407 29.630 0.00 0.00 0.00 1.52
2969 3791 9.434420 CAAAAATGCCACCTCTCAATATTAAAA 57.566 29.630 0.00 0.00 0.00 1.52
2975 3797 8.783093 TGCCACCTCTCAATATTAAAAATATCG 58.217 33.333 0.00 0.00 0.00 2.92
2976 3798 7.750903 GCCACCTCTCAATATTAAAAATATCGC 59.249 37.037 0.00 0.00 0.00 4.58
2977 3799 8.237267 CCACCTCTCAATATTAAAAATATCGCC 58.763 37.037 0.00 0.00 0.00 5.54
2978 3800 8.237267 CACCTCTCAATATTAAAAATATCGCCC 58.763 37.037 0.00 0.00 0.00 6.13
2979 3801 8.164070 ACCTCTCAATATTAAAAATATCGCCCT 58.836 33.333 0.00 0.00 0.00 5.19
2980 3802 8.669243 CCTCTCAATATTAAAAATATCGCCCTC 58.331 37.037 0.00 0.00 0.00 4.30
2981 3803 9.442047 CTCTCAATATTAAAAATATCGCCCTCT 57.558 33.333 0.00 0.00 0.00 3.69
2982 3804 9.793259 TCTCAATATTAAAAATATCGCCCTCTT 57.207 29.630 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 44 0.896019 CCAGCCGATCGATCCCTACT 60.896 60.000 18.66 8.79 0.00 2.57
53 66 2.890311 CCTGTACTTTGGTGCAAATCCA 59.110 45.455 0.00 0.00 37.59 3.41
82 103 5.352569 GTGAGAACAGATCGACCATTCATTT 59.647 40.000 0.00 0.00 0.00 2.32
114 139 3.460825 AGGGGGTGAATGAGCTAGTAAA 58.539 45.455 0.00 0.00 0.00 2.01
130 160 2.023984 AGGGCTCAAAATTAGAAGGGGG 60.024 50.000 0.00 0.00 0.00 5.40
186 222 9.628500 GTTGGTTGAGGAAAATAATATACTCCT 57.372 33.333 3.48 3.48 39.27 3.69
187 223 9.628500 AGTTGGTTGAGGAAAATAATATACTCC 57.372 33.333 0.00 0.00 0.00 3.85
192 228 8.903820 GCTGTAGTTGGTTGAGGAAAATAATAT 58.096 33.333 0.00 0.00 0.00 1.28
273 325 9.267084 ACGTACGTACTTTAAAATTCCCTAAAA 57.733 29.630 21.41 0.00 0.00 1.52
274 326 8.825667 ACGTACGTACTTTAAAATTCCCTAAA 57.174 30.769 21.41 0.00 0.00 1.85
275 327 8.707839 CAACGTACGTACTTTAAAATTCCCTAA 58.292 33.333 23.12 0.00 0.00 2.69
276 328 8.085296 TCAACGTACGTACTTTAAAATTCCCTA 58.915 33.333 23.12 0.00 0.00 3.53
277 329 6.928492 TCAACGTACGTACTTTAAAATTCCCT 59.072 34.615 23.12 0.00 0.00 4.20
278 330 7.116061 TCAACGTACGTACTTTAAAATTCCC 57.884 36.000 23.12 0.00 0.00 3.97
279 331 9.254421 GAATCAACGTACGTACTTTAAAATTCC 57.746 33.333 23.12 10.29 0.00 3.01
281 333 9.801714 CAGAATCAACGTACGTACTTTAAAATT 57.198 29.630 23.12 17.41 0.00 1.82
282 334 7.953710 GCAGAATCAACGTACGTACTTTAAAAT 59.046 33.333 23.12 11.18 0.00 1.82
283 335 7.042858 TGCAGAATCAACGTACGTACTTTAAAA 60.043 33.333 23.12 9.56 0.00 1.52
284 336 6.420306 TGCAGAATCAACGTACGTACTTTAAA 59.580 34.615 23.12 11.77 0.00 1.52
330 393 3.287312 ACTGCAAGCGTTACGTACTAA 57.713 42.857 6.63 0.00 37.60 2.24
344 475 1.604604 CGGGAAGAAGGAAACTGCAA 58.395 50.000 0.00 0.00 42.68 4.08
391 522 4.202080 TGGTAAAGATCGGGAATCACGTAG 60.202 45.833 4.33 0.00 36.79 3.51
442 578 1.676057 CAAAACAAATTACGCGCGGA 58.324 45.000 35.22 26.20 0.00 5.54
443 579 0.090510 GCAAAACAAATTACGCGCGG 59.909 50.000 35.22 17.49 0.00 6.46
444 580 1.049251 AGCAAAACAAATTACGCGCG 58.951 45.000 30.96 30.96 0.00 6.86
445 581 3.206642 CAAAGCAAAACAAATTACGCGC 58.793 40.909 5.73 0.00 0.00 6.86
446 582 4.430407 ACAAAGCAAAACAAATTACGCG 57.570 36.364 3.53 3.53 0.00 6.01
447 583 7.395645 ACTTAACAAAGCAAAACAAATTACGC 58.604 30.769 0.00 0.00 0.00 4.42
448 584 9.748100 AAACTTAACAAAGCAAAACAAATTACG 57.252 25.926 0.00 0.00 0.00 3.18
451 587 9.008965 AGGAAACTTAACAAAGCAAAACAAATT 57.991 25.926 0.00 0.00 37.44 1.82
573 754 3.230134 ACTAATTTGCAGAACCCAAGCA 58.770 40.909 0.00 0.00 36.32 3.91
612 796 1.228124 CTGGCTTCCGTTCCCAACA 60.228 57.895 0.00 0.00 0.00 3.33
615 799 4.697756 CGCTGGCTTCCGTTCCCA 62.698 66.667 0.00 0.00 0.00 4.37
632 818 4.965119 ATTACCTTTCTGCACCGAAATC 57.035 40.909 1.97 0.00 32.90 2.17
848 1295 1.068588 GTGGCAAAGAAACAAGGTCCC 59.931 52.381 0.00 0.00 0.00 4.46
916 1396 1.405821 CCTGGCCGTAGTTAGTCAGAG 59.594 57.143 0.00 0.00 0.00 3.35
1208 1704 2.545946 GCCAAGAACTCTGAACACTGAC 59.454 50.000 0.00 0.00 0.00 3.51
1308 1804 2.023223 GGCCGCAAGAACGTCGTTA 61.023 57.895 11.26 0.00 43.02 3.18
1309 1805 3.343421 GGCCGCAAGAACGTCGTT 61.343 61.111 11.08 11.08 43.02 3.85
1417 1959 9.492973 ACGGTTAACAAAAGCTAGTAGAAATTA 57.507 29.630 8.10 0.00 0.00 1.40
1418 1960 8.387190 ACGGTTAACAAAAGCTAGTAGAAATT 57.613 30.769 8.10 0.00 0.00 1.82
1419 1961 7.974482 ACGGTTAACAAAAGCTAGTAGAAAT 57.026 32.000 8.10 0.00 0.00 2.17
1420 1962 7.280652 ACAACGGTTAACAAAAGCTAGTAGAAA 59.719 33.333 8.10 0.00 0.00 2.52
1421 1963 6.762661 ACAACGGTTAACAAAAGCTAGTAGAA 59.237 34.615 8.10 0.00 0.00 2.10
1422 1964 6.282930 ACAACGGTTAACAAAAGCTAGTAGA 58.717 36.000 8.10 0.00 0.00 2.59
1423 1965 6.535274 ACAACGGTTAACAAAAGCTAGTAG 57.465 37.500 8.10 0.00 0.00 2.57
1424 1966 5.175491 CGACAACGGTTAACAAAAGCTAGTA 59.825 40.000 8.10 0.00 35.72 1.82
1425 1967 4.025480 CGACAACGGTTAACAAAAGCTAGT 60.025 41.667 8.10 0.00 35.72 2.57
1426 1968 4.209703 TCGACAACGGTTAACAAAAGCTAG 59.790 41.667 8.10 0.00 40.21 3.42
1427 1969 4.118410 TCGACAACGGTTAACAAAAGCTA 58.882 39.130 8.10 0.00 40.21 3.32
1428 1970 2.937799 TCGACAACGGTTAACAAAAGCT 59.062 40.909 8.10 0.00 40.21 3.74
1429 1971 3.322230 TCGACAACGGTTAACAAAAGC 57.678 42.857 8.10 0.00 40.21 3.51
1430 1972 5.085636 TCATCGACAACGGTTAACAAAAG 57.914 39.130 8.10 0.00 40.21 2.27
1431 1973 5.444983 CATCATCGACAACGGTTAACAAAA 58.555 37.500 8.10 0.00 40.21 2.44
1432 1974 4.611807 GCATCATCGACAACGGTTAACAAA 60.612 41.667 8.10 0.00 40.21 2.83
1433 1975 3.120477 GCATCATCGACAACGGTTAACAA 60.120 43.478 8.10 0.00 40.21 2.83
1434 1976 2.413796 GCATCATCGACAACGGTTAACA 59.586 45.455 8.10 0.00 40.21 2.41
1435 1977 2.413796 TGCATCATCGACAACGGTTAAC 59.586 45.455 0.00 0.00 40.21 2.01
1556 2134 1.134965 CGCTCAATCTCCTCGTCCTTT 60.135 52.381 0.00 0.00 0.00 3.11
2078 2689 7.463961 AGTCGACTCTAGTAATCCTCAAAAA 57.536 36.000 13.58 0.00 0.00 1.94
2079 2690 7.463961 AAGTCGACTCTAGTAATCCTCAAAA 57.536 36.000 20.33 0.00 0.00 2.44
2080 2691 7.463961 AAAGTCGACTCTAGTAATCCTCAAA 57.536 36.000 20.33 0.00 0.00 2.69
2081 2692 7.039923 ACAAAAGTCGACTCTAGTAATCCTCAA 60.040 37.037 20.33 0.00 0.00 3.02
2082 2693 6.433404 ACAAAAGTCGACTCTAGTAATCCTCA 59.567 38.462 20.33 0.00 0.00 3.86
2083 2694 6.854778 ACAAAAGTCGACTCTAGTAATCCTC 58.145 40.000 20.33 0.00 0.00 3.71
2084 2695 6.837471 ACAAAAGTCGACTCTAGTAATCCT 57.163 37.500 20.33 0.00 0.00 3.24
2085 2696 7.384387 ACAAACAAAAGTCGACTCTAGTAATCC 59.616 37.037 20.33 0.00 0.00 3.01
2086 2697 8.295569 ACAAACAAAAGTCGACTCTAGTAATC 57.704 34.615 20.33 0.00 0.00 1.75
2087 2698 9.924650 ATACAAACAAAAGTCGACTCTAGTAAT 57.075 29.630 20.33 7.43 0.00 1.89
2088 2699 9.754382 AATACAAACAAAAGTCGACTCTAGTAA 57.246 29.630 20.33 5.10 0.00 2.24
2133 2746 1.523758 GCTTCCCGTCAACATCAAGT 58.476 50.000 0.00 0.00 0.00 3.16
2134 2747 0.443869 CGCTTCCCGTCAACATCAAG 59.556 55.000 0.00 0.00 0.00 3.02
2138 2751 0.953960 GAACCGCTTCCCGTCAACAT 60.954 55.000 0.00 0.00 34.38 2.71
2175 2788 2.050836 ATGTCAGTGGCCCAACGTCA 62.051 55.000 0.00 0.00 0.00 4.35
2176 2789 1.302511 ATGTCAGTGGCCCAACGTC 60.303 57.895 0.00 0.00 0.00 4.34
2197 2810 2.570284 CCCGTTGAAAACCTGGCCC 61.570 63.158 0.00 0.00 46.28 5.80
2198 2811 3.047735 CCCGTTGAAAACCTGGCC 58.952 61.111 0.00 0.00 46.28 5.36
2200 2813 2.570284 GGGCCCGTTGAAAACCTGG 61.570 63.158 5.69 0.00 46.28 4.45
2201 2814 1.830408 TGGGCCCGTTGAAAACCTG 60.830 57.895 19.37 0.00 46.28 4.00
2202 2815 1.830847 GTGGGCCCGTTGAAAACCT 60.831 57.895 19.37 0.00 46.28 3.50
2203 2816 1.468506 ATGTGGGCCCGTTGAAAACC 61.469 55.000 19.37 0.00 46.28 3.27
2204 2817 0.319469 CATGTGGGCCCGTTGAAAAC 60.319 55.000 19.37 8.41 45.31 2.43
2205 2818 0.757188 ACATGTGGGCCCGTTGAAAA 60.757 50.000 19.37 0.00 0.00 2.29
2206 2819 1.152652 ACATGTGGGCCCGTTGAAA 60.153 52.632 19.37 0.00 0.00 2.69
2207 2820 1.602323 GACATGTGGGCCCGTTGAA 60.602 57.895 19.37 0.00 0.00 2.69
2208 2821 2.033448 GACATGTGGGCCCGTTGA 59.967 61.111 19.37 0.00 0.00 3.18
2209 2822 2.282110 TGACATGTGGGCCCGTTG 60.282 61.111 19.37 16.75 0.00 4.10
2210 2823 2.034066 CTGACATGTGGGCCCGTT 59.966 61.111 19.37 0.11 0.00 4.44
2211 2824 3.249189 ACTGACATGTGGGCCCGT 61.249 61.111 19.37 8.84 0.00 5.28
2212 2825 2.747460 CACTGACATGTGGGCCCG 60.747 66.667 19.37 4.81 34.56 6.13
2218 2831 3.558006 TGTCGTTTTACCACTGACATGTG 59.442 43.478 1.15 0.00 34.85 3.21
2219 2832 3.799366 TGTCGTTTTACCACTGACATGT 58.201 40.909 0.00 0.00 34.85 3.21
2220 2833 3.186409 CCTGTCGTTTTACCACTGACATG 59.814 47.826 0.00 0.00 38.72 3.21
2221 2834 3.399330 CCTGTCGTTTTACCACTGACAT 58.601 45.455 0.00 0.00 38.72 3.06
2222 2835 2.484065 CCCTGTCGTTTTACCACTGACA 60.484 50.000 0.00 0.00 37.89 3.58
2223 2836 2.140717 CCCTGTCGTTTTACCACTGAC 58.859 52.381 0.00 0.00 0.00 3.51
2224 2837 1.764134 ACCCTGTCGTTTTACCACTGA 59.236 47.619 0.00 0.00 0.00 3.41
2225 2838 1.871039 CACCCTGTCGTTTTACCACTG 59.129 52.381 0.00 0.00 0.00 3.66
2226 2839 1.812708 GCACCCTGTCGTTTTACCACT 60.813 52.381 0.00 0.00 0.00 4.00
2227 2840 0.589708 GCACCCTGTCGTTTTACCAC 59.410 55.000 0.00 0.00 0.00 4.16
2228 2841 0.535553 GGCACCCTGTCGTTTTACCA 60.536 55.000 0.00 0.00 0.00 3.25
2229 2842 1.571215 CGGCACCCTGTCGTTTTACC 61.571 60.000 0.00 0.00 41.12 2.85
2230 2843 0.600782 TCGGCACCCTGTCGTTTTAC 60.601 55.000 0.00 0.00 46.84 2.01
2231 2844 0.106335 TTCGGCACCCTGTCGTTTTA 59.894 50.000 0.00 0.00 46.84 1.52
2232 2845 1.153127 TTCGGCACCCTGTCGTTTT 60.153 52.632 0.00 0.00 46.84 2.43
2233 2846 1.890510 GTTCGGCACCCTGTCGTTT 60.891 57.895 0.00 0.00 46.84 3.60
2234 2847 2.280592 GTTCGGCACCCTGTCGTT 60.281 61.111 0.00 0.00 46.84 3.85
2235 2848 4.657824 CGTTCGGCACCCTGTCGT 62.658 66.667 0.00 0.00 46.84 4.34
2237 2850 2.830704 CTACCGTTCGGCACCCTGTC 62.831 65.000 11.32 0.00 0.00 3.51
2238 2851 2.918802 TACCGTTCGGCACCCTGT 60.919 61.111 11.32 0.00 0.00 4.00
2239 2852 2.125673 CTACCGTTCGGCACCCTG 60.126 66.667 11.32 0.00 0.00 4.45
2240 2853 2.283388 TCTACCGTTCGGCACCCT 60.283 61.111 11.32 0.00 0.00 4.34
2241 2854 1.315257 TACTCTACCGTTCGGCACCC 61.315 60.000 11.32 0.00 0.00 4.61
2242 2855 0.743097 ATACTCTACCGTTCGGCACC 59.257 55.000 11.32 0.00 0.00 5.01
2243 2856 1.268948 GGATACTCTACCGTTCGGCAC 60.269 57.143 11.32 0.00 0.00 5.01
2244 2857 1.027357 GGATACTCTACCGTTCGGCA 58.973 55.000 11.32 0.00 0.00 5.69
2245 2858 3.861664 GGATACTCTACCGTTCGGC 57.138 57.895 11.32 0.00 0.00 5.54
2258 2871 3.181450 CCCATCAACAAGGAGGAGGATAC 60.181 52.174 0.00 0.00 0.00 2.24
2259 2872 3.048600 CCCATCAACAAGGAGGAGGATA 58.951 50.000 0.00 0.00 0.00 2.59
2260 2873 1.849039 CCCATCAACAAGGAGGAGGAT 59.151 52.381 0.00 0.00 0.00 3.24
2261 2874 1.289160 CCCATCAACAAGGAGGAGGA 58.711 55.000 0.00 0.00 0.00 3.71
2262 2875 0.257039 CCCCATCAACAAGGAGGAGG 59.743 60.000 0.00 0.00 0.00 4.30
2263 2876 0.257039 CCCCCATCAACAAGGAGGAG 59.743 60.000 0.00 0.00 0.00 3.69
2264 2877 0.477597 ACCCCCATCAACAAGGAGGA 60.478 55.000 0.00 0.00 0.00 3.71
2265 2878 0.323725 CACCCCCATCAACAAGGAGG 60.324 60.000 0.00 0.00 0.00 4.30
2266 2879 0.698238 TCACCCCCATCAACAAGGAG 59.302 55.000 0.00 0.00 0.00 3.69
2267 2880 1.381867 ATCACCCCCATCAACAAGGA 58.618 50.000 0.00 0.00 0.00 3.36
2268 2881 2.509548 TCTATCACCCCCATCAACAAGG 59.490 50.000 0.00 0.00 0.00 3.61
2269 2882 3.931907 TCTATCACCCCCATCAACAAG 57.068 47.619 0.00 0.00 0.00 3.16
2277 2890 2.449764 TCCTCCTATCTATCACCCCCA 58.550 52.381 0.00 0.00 0.00 4.96
2362 3128 7.669427 TGTTCAACAATTGATCCAATAGCTTT 58.331 30.769 13.59 0.00 39.84 3.51
2368 3134 7.954835 TCTTCTTGTTCAACAATTGATCCAAT 58.045 30.769 13.59 0.00 37.48 3.16
2383 3149 7.461918 ACTACGAACTGTTTTTCTTCTTGTTC 58.538 34.615 0.00 0.00 0.00 3.18
2449 3220 5.356751 ACACGCACCATATATGTTGTTCAAT 59.643 36.000 11.42 0.00 0.00 2.57
2467 3238 0.948678 GCAAAACCCTTAGACACGCA 59.051 50.000 0.00 0.00 0.00 5.24
2489 3260 0.399949 ACCCGCTTCATCATCCCCTA 60.400 55.000 0.00 0.00 0.00 3.53
2498 3269 2.771943 TCCTATCTTTGACCCGCTTCAT 59.228 45.455 0.00 0.00 0.00 2.57
2524 3295 4.651778 TCTTTGACGGTTGGATCAGAATT 58.348 39.130 0.00 0.00 0.00 2.17
2529 3300 2.367241 TCACTCTTTGACGGTTGGATCA 59.633 45.455 0.00 0.00 0.00 2.92
2576 3349 1.965935 GCAACCAACCTTTTGCCAAT 58.034 45.000 0.00 0.00 41.95 3.16
2603 3420 9.545105 AATTCAAATCAATCTTTGCACAGTTTA 57.455 25.926 0.00 0.00 36.32 2.01
2702 3520 9.090103 TGGACAACAGATATAGGTCCTTATAAG 57.910 37.037 5.43 5.43 46.37 1.73
2715 3533 3.433598 CCCGGTGATTGGACAACAGATAT 60.434 47.826 0.00 0.00 0.00 1.63
2716 3534 2.093181 CCCGGTGATTGGACAACAGATA 60.093 50.000 0.00 0.00 0.00 1.98
2719 3537 0.960364 CCCCGGTGATTGGACAACAG 60.960 60.000 0.00 0.00 0.00 3.16
2721 3539 1.677633 CCCCCGGTGATTGGACAAC 60.678 63.158 0.00 0.00 0.00 3.32
2723 3541 2.530661 ACCCCCGGTGATTGGACA 60.531 61.111 0.00 0.00 32.98 4.02
2758 3580 1.504900 GAATGGGGGAAACGTTCGC 59.495 57.895 0.00 3.80 41.44 4.70
2759 3581 1.791662 CGAATGGGGGAAACGTTCG 59.208 57.895 0.00 5.55 46.58 3.95
2760 3582 0.800631 GTCGAATGGGGGAAACGTTC 59.199 55.000 0.00 0.00 0.00 3.95
2761 3583 0.108963 TGTCGAATGGGGGAAACGTT 59.891 50.000 0.00 0.00 0.00 3.99
2762 3584 0.321298 CTGTCGAATGGGGGAAACGT 60.321 55.000 0.00 0.00 0.00 3.99
2763 3585 1.644786 GCTGTCGAATGGGGGAAACG 61.645 60.000 0.00 0.00 0.00 3.60
2764 3586 1.644786 CGCTGTCGAATGGGGGAAAC 61.645 60.000 0.00 0.00 38.10 2.78
2765 3587 1.376683 CGCTGTCGAATGGGGGAAA 60.377 57.895 0.00 0.00 38.10 3.13
2766 3588 2.267642 CGCTGTCGAATGGGGGAA 59.732 61.111 0.00 0.00 38.10 3.97
2767 3589 3.781307 CCGCTGTCGAATGGGGGA 61.781 66.667 12.33 0.00 38.10 4.81
2769 3591 3.740128 CTCCCGCTGTCGAATGGGG 62.740 68.421 12.97 12.97 42.20 4.96
2770 3592 2.202932 CTCCCGCTGTCGAATGGG 60.203 66.667 6.25 6.25 43.36 4.00
2771 3593 2.202932 CCTCCCGCTGTCGAATGG 60.203 66.667 0.00 0.00 38.10 3.16
2772 3594 2.202932 CCCTCCCGCTGTCGAATG 60.203 66.667 0.00 0.00 38.10 2.67
2773 3595 4.162690 GCCCTCCCGCTGTCGAAT 62.163 66.667 0.00 0.00 38.10 3.34
2777 3599 4.864334 CATGGCCCTCCCGCTGTC 62.864 72.222 0.00 0.00 35.87 3.51
2784 3606 4.380945 TGGTTGCCATGGCCCTCC 62.381 66.667 33.44 28.64 41.09 4.30
2785 3607 3.070576 GTGGTTGCCATGGCCCTC 61.071 66.667 33.44 23.35 41.09 4.30
2786 3608 4.702274 GGTGGTTGCCATGGCCCT 62.702 66.667 33.44 0.00 41.09 5.19
2788 3610 3.384532 CTGGTGGTTGCCATGGCC 61.385 66.667 33.44 18.99 41.09 5.36
2789 3611 2.158561 GAACTGGTGGTTGCCATGGC 62.159 60.000 30.54 30.54 38.41 4.40
2790 3612 1.535204 GGAACTGGTGGTTGCCATGG 61.535 60.000 7.63 7.63 39.82 3.66
2791 3613 0.540365 AGGAACTGGTGGTTGCCATG 60.540 55.000 0.00 0.00 45.53 3.66
2792 3614 0.251341 GAGGAACTGGTGGTTGCCAT 60.251 55.000 0.00 0.00 45.53 4.40
2793 3615 1.150536 GAGGAACTGGTGGTTGCCA 59.849 57.895 0.00 0.00 45.53 4.92
2794 3616 0.467290 TTGAGGAACTGGTGGTTGCC 60.467 55.000 0.00 0.00 45.53 4.52
2795 3617 1.338020 CTTTGAGGAACTGGTGGTTGC 59.662 52.381 0.00 0.00 41.55 4.17
2796 3618 1.956477 CCTTTGAGGAACTGGTGGTTG 59.044 52.381 0.00 0.00 41.55 3.77
2797 3619 1.569072 ACCTTTGAGGAACTGGTGGTT 59.431 47.619 0.07 0.00 41.55 3.67
2798 3620 1.143073 GACCTTTGAGGAACTGGTGGT 59.857 52.381 0.07 0.00 41.55 4.16
2799 3621 1.545651 GGACCTTTGAGGAACTGGTGG 60.546 57.143 0.07 0.00 41.55 4.61
2800 3622 1.142870 TGGACCTTTGAGGAACTGGTG 59.857 52.381 0.07 0.00 41.55 4.17
2801 3623 1.143073 GTGGACCTTTGAGGAACTGGT 59.857 52.381 0.07 0.00 41.55 4.00
2802 3624 1.421646 AGTGGACCTTTGAGGAACTGG 59.578 52.381 0.07 0.00 41.55 4.00
2803 3625 2.938956 AGTGGACCTTTGAGGAACTG 57.061 50.000 0.07 0.00 41.55 3.16
2805 3627 5.880887 CCTATTTAGTGGACCTTTGAGGAAC 59.119 44.000 0.07 0.00 37.67 3.62
2806 3628 5.550403 ACCTATTTAGTGGACCTTTGAGGAA 59.450 40.000 0.07 0.00 37.67 3.36
2807 3629 5.098663 ACCTATTTAGTGGACCTTTGAGGA 58.901 41.667 0.07 0.00 37.67 3.71
2808 3630 5.437191 ACCTATTTAGTGGACCTTTGAGG 57.563 43.478 0.00 0.00 42.49 3.86
2809 3631 7.665974 AGAAAACCTATTTAGTGGACCTTTGAG 59.334 37.037 0.00 0.00 0.00 3.02
2810 3632 7.523415 AGAAAACCTATTTAGTGGACCTTTGA 58.477 34.615 0.00 0.00 0.00 2.69
2811 3633 7.761038 AGAAAACCTATTTAGTGGACCTTTG 57.239 36.000 0.00 0.00 0.00 2.77
2812 3634 9.516546 CTAAGAAAACCTATTTAGTGGACCTTT 57.483 33.333 0.00 0.00 0.00 3.11
2813 3635 8.887393 TCTAAGAAAACCTATTTAGTGGACCTT 58.113 33.333 0.00 0.00 0.00 3.50
2814 3636 8.445361 TCTAAGAAAACCTATTTAGTGGACCT 57.555 34.615 0.00 0.00 0.00 3.85
2815 3637 8.944029 GTTCTAAGAAAACCTATTTAGTGGACC 58.056 37.037 0.00 0.00 0.00 4.46
2816 3638 9.498176 TGTTCTAAGAAAACCTATTTAGTGGAC 57.502 33.333 0.00 0.00 0.00 4.02
2819 3641 9.774742 GCATGTTCTAAGAAAACCTATTTAGTG 57.225 33.333 0.00 0.00 0.00 2.74
2820 3642 8.957466 GGCATGTTCTAAGAAAACCTATTTAGT 58.043 33.333 0.00 0.00 0.00 2.24
2821 3643 8.956426 TGGCATGTTCTAAGAAAACCTATTTAG 58.044 33.333 0.00 0.00 0.00 1.85
2822 3644 8.871629 TGGCATGTTCTAAGAAAACCTATTTA 57.128 30.769 0.00 0.00 0.00 1.40
2823 3645 7.775053 TGGCATGTTCTAAGAAAACCTATTT 57.225 32.000 0.00 0.00 0.00 1.40
2824 3646 7.615365 TCATGGCATGTTCTAAGAAAACCTATT 59.385 33.333 25.62 0.00 0.00 1.73
2825 3647 7.118723 TCATGGCATGTTCTAAGAAAACCTAT 58.881 34.615 25.62 0.00 0.00 2.57
2826 3648 6.480763 TCATGGCATGTTCTAAGAAAACCTA 58.519 36.000 25.62 0.00 0.00 3.08
2827 3649 5.324409 TCATGGCATGTTCTAAGAAAACCT 58.676 37.500 25.62 0.00 0.00 3.50
2828 3650 5.643379 TCATGGCATGTTCTAAGAAAACC 57.357 39.130 25.62 0.00 0.00 3.27
2829 3651 6.446318 TGTTCATGGCATGTTCTAAGAAAAC 58.554 36.000 25.62 18.43 0.00 2.43
2830 3652 6.647334 TGTTCATGGCATGTTCTAAGAAAA 57.353 33.333 25.62 7.76 0.00 2.29
2831 3653 6.647334 TTGTTCATGGCATGTTCTAAGAAA 57.353 33.333 25.62 8.47 0.00 2.52
2832 3654 6.647334 TTTGTTCATGGCATGTTCTAAGAA 57.353 33.333 25.62 14.64 0.00 2.52
2833 3655 6.647334 TTTTGTTCATGGCATGTTCTAAGA 57.353 33.333 25.62 9.57 0.00 2.10
2834 3656 7.599621 TGATTTTTGTTCATGGCATGTTCTAAG 59.400 33.333 25.62 0.00 0.00 2.18
2835 3657 7.440198 TGATTTTTGTTCATGGCATGTTCTAA 58.560 30.769 25.62 18.18 0.00 2.10
2836 3658 6.990798 TGATTTTTGTTCATGGCATGTTCTA 58.009 32.000 25.62 14.04 0.00 2.10
2837 3659 5.856156 TGATTTTTGTTCATGGCATGTTCT 58.144 33.333 25.62 5.47 0.00 3.01
2838 3660 5.927689 TCTGATTTTTGTTCATGGCATGTTC 59.072 36.000 25.62 19.05 0.00 3.18
2839 3661 5.856156 TCTGATTTTTGTTCATGGCATGTT 58.144 33.333 25.62 3.57 0.00 2.71
2840 3662 5.471556 TCTGATTTTTGTTCATGGCATGT 57.528 34.783 25.62 5.01 0.00 3.21
2841 3663 6.788684 TTTCTGATTTTTGTTCATGGCATG 57.211 33.333 21.42 21.42 0.00 4.06
2842 3664 7.662258 TCATTTTCTGATTTTTGTTCATGGCAT 59.338 29.630 0.00 0.00 0.00 4.40
2843 3665 6.990939 TCATTTTCTGATTTTTGTTCATGGCA 59.009 30.769 0.00 0.00 0.00 4.92
2844 3666 7.424227 TCATTTTCTGATTTTTGTTCATGGC 57.576 32.000 0.00 0.00 0.00 4.40
2870 3692 8.449251 AATATGACAACTTTTGTGGCATTTTT 57.551 26.923 0.00 0.00 45.52 1.94
2871 3693 9.723601 ATAATATGACAACTTTTGTGGCATTTT 57.276 25.926 0.00 0.09 45.52 1.82
2872 3694 9.723601 AATAATATGACAACTTTTGTGGCATTT 57.276 25.926 0.00 0.00 45.52 2.32
2875 3697 9.019656 ACTAATAATATGACAACTTTTGTGGCA 57.980 29.630 0.00 0.00 45.52 4.92
2876 3698 9.503427 GACTAATAATATGACAACTTTTGTGGC 57.497 33.333 0.00 0.00 45.52 5.01
2882 3704 9.174166 GGTGGTGACTAATAATATGACAACTTT 57.826 33.333 0.00 0.00 0.00 2.66
2883 3705 7.773690 GGGTGGTGACTAATAATATGACAACTT 59.226 37.037 0.00 0.00 0.00 2.66
2884 3706 7.092623 TGGGTGGTGACTAATAATATGACAACT 60.093 37.037 0.00 0.00 0.00 3.16
2885 3707 7.051623 TGGGTGGTGACTAATAATATGACAAC 58.948 38.462 0.00 0.00 0.00 3.32
2886 3708 7.201702 TGGGTGGTGACTAATAATATGACAA 57.798 36.000 0.00 0.00 0.00 3.18
2887 3709 6.816616 TGGGTGGTGACTAATAATATGACA 57.183 37.500 0.00 0.00 0.00 3.58
2888 3710 8.514330 TTTTGGGTGGTGACTAATAATATGAC 57.486 34.615 0.00 0.00 0.00 3.06
2925 3747 8.655970 GCATTTTTGTTTACTGACACTTTCTTT 58.344 29.630 0.00 0.00 0.00 2.52
2926 3748 7.277760 GGCATTTTTGTTTACTGACACTTTCTT 59.722 33.333 0.00 0.00 0.00 2.52
2927 3749 6.756542 GGCATTTTTGTTTACTGACACTTTCT 59.243 34.615 0.00 0.00 0.00 2.52
2928 3750 6.533367 TGGCATTTTTGTTTACTGACACTTTC 59.467 34.615 0.00 0.00 0.00 2.62
2929 3751 6.312672 GTGGCATTTTTGTTTACTGACACTTT 59.687 34.615 0.00 0.00 41.58 2.66
2930 3752 5.810074 GTGGCATTTTTGTTTACTGACACTT 59.190 36.000 0.00 0.00 41.58 3.16
2931 3753 5.348164 GTGGCATTTTTGTTTACTGACACT 58.652 37.500 0.00 0.00 41.58 3.55
2932 3754 4.506288 GGTGGCATTTTTGTTTACTGACAC 59.494 41.667 0.00 0.00 43.57 3.67
2933 3755 4.404073 AGGTGGCATTTTTGTTTACTGACA 59.596 37.500 0.00 0.00 0.00 3.58
2934 3756 4.944048 AGGTGGCATTTTTGTTTACTGAC 58.056 39.130 0.00 0.00 0.00 3.51
2935 3757 4.892934 AGAGGTGGCATTTTTGTTTACTGA 59.107 37.500 0.00 0.00 0.00 3.41
2936 3758 5.200368 AGAGGTGGCATTTTTGTTTACTG 57.800 39.130 0.00 0.00 0.00 2.74
2937 3759 4.892934 TGAGAGGTGGCATTTTTGTTTACT 59.107 37.500 0.00 0.00 0.00 2.24
2938 3760 5.195001 TGAGAGGTGGCATTTTTGTTTAC 57.805 39.130 0.00 0.00 0.00 2.01
2939 3761 5.860941 TTGAGAGGTGGCATTTTTGTTTA 57.139 34.783 0.00 0.00 0.00 2.01
2940 3762 4.751767 TTGAGAGGTGGCATTTTTGTTT 57.248 36.364 0.00 0.00 0.00 2.83
2941 3763 4.961438 ATTGAGAGGTGGCATTTTTGTT 57.039 36.364 0.00 0.00 0.00 2.83
2942 3764 6.610075 AATATTGAGAGGTGGCATTTTTGT 57.390 33.333 0.00 0.00 0.00 2.83
2943 3765 9.434420 TTTTAATATTGAGAGGTGGCATTTTTG 57.566 29.630 0.00 0.00 0.00 2.44
2949 3771 8.783093 CGATATTTTTAATATTGAGAGGTGGCA 58.217 33.333 0.00 0.00 0.00 4.92
2950 3772 7.750903 GCGATATTTTTAATATTGAGAGGTGGC 59.249 37.037 9.74 0.00 0.00 5.01
2951 3773 8.237267 GGCGATATTTTTAATATTGAGAGGTGG 58.763 37.037 9.74 0.00 0.00 4.61
2952 3774 8.237267 GGGCGATATTTTTAATATTGAGAGGTG 58.763 37.037 9.74 0.00 0.00 4.00
2953 3775 8.164070 AGGGCGATATTTTTAATATTGAGAGGT 58.836 33.333 9.74 0.00 0.00 3.85
2954 3776 8.567285 AGGGCGATATTTTTAATATTGAGAGG 57.433 34.615 9.74 0.00 0.00 3.69
2955 3777 9.442047 AGAGGGCGATATTTTTAATATTGAGAG 57.558 33.333 9.74 0.00 0.00 3.20
2956 3778 9.793259 AAGAGGGCGATATTTTTAATATTGAGA 57.207 29.630 9.74 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.