Multiple sequence alignment - TraesCS7D01G430800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G430800 chr7D 100.000 7299 0 0 1 7299 550106854 550099556 0.000000e+00 13479.0
1 TraesCS7D01G430800 chr7D 86.149 296 35 5 1 292 255216509 255216802 1.530000e-81 315.0
2 TraesCS7D01G430800 chr7D 91.971 137 8 1 2382 2515 28445320 28445184 9.670000e-44 189.0
3 TraesCS7D01G430800 chr7D 78.750 160 20 12 2369 2521 550104334 550104486 2.170000e-15 95.3
4 TraesCS7D01G430800 chr7A 90.856 4429 262 78 2608 6950 635503021 635498650 0.000000e+00 5803.0
5 TraesCS7D01G430800 chr7A 89.961 2032 117 45 241 2192 635505208 635503184 0.000000e+00 2542.0
6 TraesCS7D01G430800 chr7A 94.581 203 8 2 6989 7188 635497908 635497706 1.980000e-80 311.0
7 TraesCS7D01G430800 chr7A 78.623 276 25 25 32 295 357211890 357211637 1.270000e-32 152.0
8 TraesCS7D01G430800 chr7A 100.000 28 0 0 362 389 368192338 368192311 1.300000e-02 52.8
9 TraesCS7D01G430800 chr7B 95.752 2872 97 15 3000 5854 594420312 594417449 0.000000e+00 4604.0
10 TraesCS7D01G430800 chr7B 92.865 1864 93 26 357 2192 594422815 594420964 0.000000e+00 2669.0
11 TraesCS7D01G430800 chr7B 93.617 376 20 2 5853 6228 594417310 594416939 6.400000e-155 558.0
12 TraesCS7D01G430800 chr7B 95.402 348 10 2 1 342 594423144 594422797 3.850000e-152 549.0
13 TraesCS7D01G430800 chr7B 84.230 539 61 17 2510 3029 594420860 594420327 3.040000e-138 503.0
14 TraesCS7D01G430800 chr7B 81.240 597 51 33 6732 7299 594415962 594415398 6.770000e-115 425.0
15 TraesCS7D01G430800 chr7B 84.589 292 35 9 1 285 233031701 233031989 1.550000e-71 281.0
16 TraesCS7D01G430800 chr7B 96.491 114 3 1 2270 2383 594420968 594420856 3.480000e-43 187.0
17 TraesCS7D01G430800 chr7B 98.925 93 0 1 2189 2281 483787825 483787734 1.630000e-36 165.0
18 TraesCS7D01G430800 chr7B 94.286 35 0 1 355 389 306518088 306518120 1.300000e-02 52.8
19 TraesCS7D01G430800 chr1A 89.865 296 18 9 1 292 218059636 218059923 3.220000e-98 370.0
20 TraesCS7D01G430800 chr1A 78.544 261 29 23 40 288 233680294 233680049 5.900000e-31 147.0
21 TraesCS7D01G430800 chr1A 81.818 165 18 8 132 288 231324708 231324548 2.140000e-25 128.0
22 TraesCS7D01G430800 chr1A 77.358 159 22 7 1 145 304608919 304609077 1.690000e-11 82.4
23 TraesCS7D01G430800 chr1A 77.358 159 22 7 1 145 304788165 304788323 1.690000e-11 82.4
24 TraesCS7D01G430800 chr5D 84.229 279 27 9 1 268 162432819 162433091 9.400000e-64 255.0
25 TraesCS7D01G430800 chr5D 81.395 215 20 17 32 239 220104757 220104556 2.730000e-34 158.0
26 TraesCS7D01G430800 chr5D 89.062 128 12 1 2385 2512 487953081 487952956 2.730000e-34 158.0
27 TraesCS7D01G430800 chr5D 94.175 103 4 1 2191 2293 364250224 364250324 9.800000e-34 156.0
28 TraesCS7D01G430800 chr5D 83.333 180 14 13 58 233 473241958 473241791 1.270000e-32 152.0
29 TraesCS7D01G430800 chr5D 84.071 113 14 4 161 272 223896762 223896871 1.000000e-18 106.0
30 TraesCS7D01G430800 chr5D 80.620 129 15 9 40 167 209199528 209199409 2.800000e-14 91.6
31 TraesCS7D01G430800 chr5D 82.075 106 16 2 1 104 244378597 244378701 3.630000e-13 87.9
32 TraesCS7D01G430800 chr2D 90.303 165 10 5 112 273 243309848 243309687 2.060000e-50 211.0
33 TraesCS7D01G430800 chr3B 93.701 127 8 0 2382 2508 252557562 252557688 2.690000e-44 191.0
34 TraesCS7D01G430800 chr3B 97.917 96 0 2 2189 2283 18780631 18780537 1.630000e-36 165.0
35 TraesCS7D01G430800 chr6B 91.603 131 11 0 2382 2512 58075268 58075398 1.620000e-41 182.0
36 TraesCS7D01G430800 chr6B 84.677 124 18 1 3482 3604 163233661 163233538 9.940000e-24 122.0
37 TraesCS7D01G430800 chr3D 84.946 186 21 6 111 292 293754730 293754912 1.620000e-41 182.0
38 TraesCS7D01G430800 chr3D 83.929 112 10 6 58 168 270154230 270154126 4.660000e-17 100.0
39 TraesCS7D01G430800 chr6A 90.977 133 10 1 2382 2512 496236798 496236666 2.090000e-40 178.0
40 TraesCS7D01G430800 chr6A 97.938 97 0 2 2188 2283 542602784 542602879 4.530000e-37 167.0
41 TraesCS7D01G430800 chr3A 98.947 95 1 0 2189 2283 557209411 557209505 3.500000e-38 171.0
42 TraesCS7D01G430800 chr3A 98.913 92 1 0 2191 2282 391475473 391475382 1.630000e-36 165.0
43 TraesCS7D01G430800 chr6D 100.000 91 0 0 2189 2279 271233529 271233439 1.260000e-37 169.0
44 TraesCS7D01G430800 chr6D 82.727 110 12 6 1 110 307894520 307894418 2.800000e-14 91.6
45 TraesCS7D01G430800 chr4A 82.407 216 16 19 32 239 111741731 111741530 1.260000e-37 169.0
46 TraesCS7D01G430800 chr4D 96.078 102 2 2 2184 2283 447129604 447129503 1.630000e-36 165.0
47 TraesCS7D01G430800 chr5A 89.313 131 12 1 2382 2512 608656216 608656088 5.860000e-36 163.0
48 TraesCS7D01G430800 chr2B 93.396 106 3 4 2185 2287 248100037 248099933 3.530000e-33 154.0
49 TraesCS7D01G430800 chr5B 78.136 279 34 23 32 302 580523831 580523572 1.270000e-32 152.0
50 TraesCS7D01G430800 chr4B 89.431 123 9 4 112 233 329274988 329275107 1.270000e-32 152.0
51 TraesCS7D01G430800 chr4B 89.831 118 11 1 2396 2512 3490119 3490002 4.560000e-32 150.0
52 TraesCS7D01G430800 chr4B 81.340 209 18 19 32 233 329477942 329477748 4.560000e-32 150.0
53 TraesCS7D01G430800 chr4B 76.812 207 16 20 32 233 351453118 351453297 3.630000e-13 87.9
54 TraesCS7D01G430800 chr4B 81.301 123 5 7 113 233 317919271 317919377 4.690000e-12 84.2
55 TraesCS7D01G430800 chr4B 76.329 207 17 20 32 233 337367280 337367459 1.690000e-11 82.4
56 TraesCS7D01G430800 chr4B 89.062 64 3 3 113 173 142608500 142608438 7.850000e-10 76.8
57 TraesCS7D01G430800 chr1B 91.818 110 8 1 2191 2299 503352988 503352879 1.270000e-32 152.0
58 TraesCS7D01G430800 chrUn 89.831 118 11 1 2396 2512 248180409 248180292 4.560000e-32 150.0
59 TraesCS7D01G430800 chrUn 89.831 118 11 1 2396 2512 374427030 374426913 4.560000e-32 150.0
60 TraesCS7D01G430800 chrUn 94.286 35 0 1 355 389 123392862 123392894 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G430800 chr7D 550099556 550106854 7298 True 13479.000000 13479 100.000000 1 7299 1 chr7D.!!$R2 7298
1 TraesCS7D01G430800 chr7A 635497706 635505208 7502 True 2885.333333 5803 91.799333 241 7188 3 chr7A.!!$R3 6947
2 TraesCS7D01G430800 chr7B 594415398 594423144 7746 True 1356.428571 4604 91.371000 1 7299 7 chr7B.!!$R2 7298

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
966 1010 0.466189 CTGTTTGTGCCACCTCACCT 60.466 55.000 0.00 0.0 36.17 4.00 F
1268 1327 0.035439 TTCGATTCCCCTGTTCTGCC 60.035 55.000 0.00 0.0 0.00 4.85 F
2396 2487 0.116342 TGTGCTCCCTCTGTTCCCTA 59.884 55.000 0.00 0.0 0.00 3.53 F
3145 3332 0.249996 GGCATTGTGGCAAAGCAAGT 60.250 50.000 10.48 0.0 43.14 3.16 F
4158 4362 4.435425 AGTGTACAAGAAGCGTAAACACA 58.565 39.130 0.00 0.0 30.68 3.72 F
5923 6285 1.286880 GCTGATTGCGGTTTGCTGT 59.713 52.632 0.00 0.0 46.63 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2586 2723 0.324943 TTCCGAGGAAAGAAGCCCTG 59.675 55.0 1.44 0.0 31.84 4.45 R
2588 2725 2.130272 ATTTCCGAGGAAAGAAGCCC 57.870 50.0 20.27 0.0 45.66 5.19 R
3958 4160 0.754957 CAAGCCACCAACAGTCCCAA 60.755 55.0 0.00 0.0 0.00 4.12 R
4646 4860 1.593196 CACCAGGTGTGTCGACAAAT 58.407 50.0 21.95 3.4 40.26 2.32 R
6021 6383 0.822532 CCCCTGCTGGAAGATGATGC 60.823 60.0 11.88 0.0 34.07 3.91 R
6950 7829 0.179100 AAGATCGACATGGAGCACGG 60.179 55.0 0.00 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 186 5.876612 CTCTCAAGAGAAATCCCACAAAG 57.123 43.478 0.47 0.00 44.74 2.77
254 255 2.876221 TCCCTAGAAATAAGGAGGGGGA 59.124 50.000 5.99 0.00 39.17 4.81
288 293 3.451178 GTGCTAGTCATGAAGGGGTAAGA 59.549 47.826 0.00 0.00 0.00 2.10
321 328 2.484062 GCCACAGCTGCACACACTT 61.484 57.895 15.27 0.00 35.50 3.16
324 331 1.586422 CACAGCTGCACACACTTAGT 58.414 50.000 15.27 0.00 0.00 2.24
502 529 9.393249 CGTCTTTGCTTACAATGATTTTCTTTA 57.607 29.630 0.00 0.00 40.73 1.85
909 953 3.193263 CTCCACTCCAGTCAATCAATCG 58.807 50.000 0.00 0.00 0.00 3.34
952 996 3.123050 GCCATTTTTGAACTCGCTGTTT 58.877 40.909 0.00 0.00 39.30 2.83
966 1010 0.466189 CTGTTTGTGCCACCTCACCT 60.466 55.000 0.00 0.00 36.17 4.00
1196 1248 2.527875 GATCCCCGCCTCCCATCT 60.528 66.667 0.00 0.00 0.00 2.90
1204 1256 1.072159 GCCTCCCATCTCCCATTCG 59.928 63.158 0.00 0.00 0.00 3.34
1209 1261 0.607489 CCCATCTCCCATTCGCCATC 60.607 60.000 0.00 0.00 0.00 3.51
1210 1262 0.607489 CCATCTCCCATTCGCCATCC 60.607 60.000 0.00 0.00 0.00 3.51
1211 1263 0.607489 CATCTCCCATTCGCCATCCC 60.607 60.000 0.00 0.00 0.00 3.85
1213 1265 3.832237 CTCCCATTCGCCATCCCCG 62.832 68.421 0.00 0.00 0.00 5.73
1215 1267 4.569180 CCATTCGCCATCCCCGCT 62.569 66.667 0.00 0.00 0.00 5.52
1217 1269 3.164269 ATTCGCCATCCCCGCTCT 61.164 61.111 0.00 0.00 0.00 4.09
1245 1304 3.152937 CTGCTTGCTGCTCGCGATC 62.153 63.158 10.36 6.00 43.27 3.69
1255 1314 1.004277 GCTCGCGATCCGATTCGATT 61.004 55.000 10.36 0.00 46.31 3.34
1256 1315 0.978385 CTCGCGATCCGATTCGATTC 59.022 55.000 10.36 3.09 46.31 2.52
1260 1319 0.603569 CGATCCGATTCGATTCCCCT 59.396 55.000 7.83 0.00 41.62 4.79
1261 1320 1.670087 CGATCCGATTCGATTCCCCTG 60.670 57.143 7.83 0.00 41.62 4.45
1262 1321 1.344763 GATCCGATTCGATTCCCCTGT 59.655 52.381 7.83 0.00 0.00 4.00
1265 1324 1.139058 CCGATTCGATTCCCCTGTTCT 59.861 52.381 7.83 0.00 0.00 3.01
1266 1325 2.205074 CGATTCGATTCCCCTGTTCTG 58.795 52.381 0.00 0.00 0.00 3.02
1268 1327 0.035439 TTCGATTCCCCTGTTCTGCC 60.035 55.000 0.00 0.00 0.00 4.85
1418 1492 4.932146 TGTCGATTTGATCTCTAATGCGA 58.068 39.130 0.00 0.00 0.00 5.10
1552 1631 6.453943 CATTTCATTGTTCATTGTACCACCA 58.546 36.000 0.00 0.00 0.00 4.17
1567 1646 2.240667 ACCACCATGCTGCTTCTAGAAT 59.759 45.455 5.44 0.00 0.00 2.40
1630 1710 2.568612 CTCGTCTCTCTGGCGCAA 59.431 61.111 10.83 0.00 44.46 4.85
1686 1766 0.517316 GAAGGTTGTTGCTAGCCACG 59.483 55.000 13.29 0.00 0.00 4.94
1762 1846 6.255453 GTCTGACAGATCTAATCAGCTTCAAC 59.745 42.308 22.88 15.26 39.80 3.18
1817 1901 2.906354 CCGTAAGTCTGCTATGCCTTT 58.094 47.619 0.00 0.00 0.00 3.11
1820 1904 5.779922 CCGTAAGTCTGCTATGCCTTTATA 58.220 41.667 0.00 0.00 0.00 0.98
1839 1924 9.403110 CCTTTATACTGCGTCGTTAGTATTTAT 57.597 33.333 21.16 8.72 39.89 1.40
1845 1930 5.593968 TGCGTCGTTAGTATTTATCCATGT 58.406 37.500 0.00 0.00 0.00 3.21
1883 1968 2.560542 ACTGACCTGTGAGAGTGATGAC 59.439 50.000 0.00 0.00 0.00 3.06
1947 2032 5.187772 CGATCAGGATATGGATGGTAAGGAA 59.812 44.000 0.00 0.00 0.00 3.36
1954 2039 3.662759 TGGATGGTAAGGAATGAACCC 57.337 47.619 0.00 0.00 31.97 4.11
1959 2044 6.192044 GGATGGTAAGGAATGAACCCTTAAA 58.808 40.000 0.00 0.00 44.98 1.52
1961 2046 5.326900 TGGTAAGGAATGAACCCTTAAACC 58.673 41.667 0.00 0.00 44.98 3.27
1966 2051 5.325239 AGGAATGAACCCTTAAACCTGAAG 58.675 41.667 0.00 0.00 0.00 3.02
1971 2056 5.701224 TGAACCCTTAAACCTGAAGTCATT 58.299 37.500 0.00 0.00 0.00 2.57
1974 2059 4.354087 ACCCTTAAACCTGAAGTCATTCCT 59.646 41.667 0.00 0.00 34.28 3.36
1976 2061 4.702131 CCTTAAACCTGAAGTCATTCCTGG 59.298 45.833 0.00 0.00 34.28 4.45
1988 2074 7.295672 TGAAGTCATTCCTGGGGAGAAATATAT 59.704 37.037 0.00 0.00 34.28 0.86
1989 2075 7.025520 AGTCATTCCTGGGGAGAAATATATG 57.974 40.000 0.00 0.00 31.21 1.78
1995 2081 5.553162 TCCTGGGGAGAAATATATGAAGCAT 59.447 40.000 0.00 0.00 0.00 3.79
1996 2082 6.735229 TCCTGGGGAGAAATATATGAAGCATA 59.265 38.462 0.00 0.00 0.00 3.14
1997 2083 7.239563 TCCTGGGGAGAAATATATGAAGCATAA 59.760 37.037 0.00 0.00 29.74 1.90
1998 2084 7.337942 CCTGGGGAGAAATATATGAAGCATAAC 59.662 40.741 0.00 0.00 29.74 1.89
1999 2085 7.754624 TGGGGAGAAATATATGAAGCATAACA 58.245 34.615 0.00 0.00 29.74 2.41
2062 2148 5.475719 TCTACTAACCATTGGTTCAACTCG 58.524 41.667 24.04 9.60 43.05 4.18
2122 2209 9.965748 CGTTTTATTTTGTTTGTTGAGTTGAAT 57.034 25.926 0.00 0.00 0.00 2.57
2176 2266 8.871686 ATGTTAGAAAGTTTCATTTCCAACAC 57.128 30.769 17.65 1.97 46.22 3.32
2195 2285 5.607119 ACACGTTCATTGTTGAATACTCC 57.393 39.130 0.00 0.00 43.49 3.85
2196 2286 4.454504 ACACGTTCATTGTTGAATACTCCC 59.545 41.667 0.00 0.00 43.49 4.30
2197 2287 4.695455 CACGTTCATTGTTGAATACTCCCT 59.305 41.667 0.00 0.00 43.49 4.20
2198 2288 4.935808 ACGTTCATTGTTGAATACTCCCTC 59.064 41.667 0.00 0.00 43.49 4.30
2199 2289 5.178797 CGTTCATTGTTGAATACTCCCTCT 58.821 41.667 0.00 0.00 43.49 3.69
2200 2290 5.063944 CGTTCATTGTTGAATACTCCCTCTG 59.936 44.000 0.00 0.00 43.49 3.35
2201 2291 5.762179 TCATTGTTGAATACTCCCTCTGT 57.238 39.130 0.00 0.00 0.00 3.41
2202 2292 6.867519 TCATTGTTGAATACTCCCTCTGTA 57.132 37.500 0.00 0.00 0.00 2.74
2203 2293 7.252612 TCATTGTTGAATACTCCCTCTGTAA 57.747 36.000 0.00 0.00 0.00 2.41
2204 2294 7.685481 TCATTGTTGAATACTCCCTCTGTAAA 58.315 34.615 0.00 0.00 0.00 2.01
2205 2295 7.606456 TCATTGTTGAATACTCCCTCTGTAAAC 59.394 37.037 0.00 0.00 0.00 2.01
2206 2296 6.681729 TGTTGAATACTCCCTCTGTAAACT 57.318 37.500 0.00 0.00 0.00 2.66
2207 2297 7.786046 TGTTGAATACTCCCTCTGTAAACTA 57.214 36.000 0.00 0.00 0.00 2.24
2208 2298 8.197592 TGTTGAATACTCCCTCTGTAAACTAA 57.802 34.615 0.00 0.00 0.00 2.24
2209 2299 8.822805 TGTTGAATACTCCCTCTGTAAACTAAT 58.177 33.333 0.00 0.00 0.00 1.73
2217 2307 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2218 2308 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2219 2309 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2220 2310 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2221 2311 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2236 2326 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
2237 2327 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2238 2328 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
2239 2329 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
2240 2330 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
2241 2331 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
2242 2332 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
2248 2338 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
2249 2339 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
2250 2340 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
2251 2341 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
2252 2342 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
2266 2356 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2267 2357 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2268 2358 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2269 2359 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2270 2360 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2271 2361 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2272 2362 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2290 2380 6.253946 AGGGAGTAGCATATAACTTTGCTT 57.746 37.500 3.99 0.00 46.71 3.91
2380 2471 4.320494 GGTGAGGTAAAGCTTTGACATGTG 60.320 45.833 22.02 0.00 0.00 3.21
2381 2472 3.253188 TGAGGTAAAGCTTTGACATGTGC 59.747 43.478 22.02 0.00 0.00 4.57
2382 2473 3.490348 AGGTAAAGCTTTGACATGTGCT 58.510 40.909 22.02 2.11 37.37 4.40
2383 2474 3.503748 AGGTAAAGCTTTGACATGTGCTC 59.496 43.478 22.02 0.00 34.38 4.26
2384 2475 3.366374 GGTAAAGCTTTGACATGTGCTCC 60.366 47.826 22.02 0.00 34.38 4.70
2385 2476 1.251251 AAGCTTTGACATGTGCTCCC 58.749 50.000 1.15 0.00 34.38 4.30
2386 2477 0.403271 AGCTTTGACATGTGCTCCCT 59.597 50.000 1.15 0.00 0.00 4.20
2387 2478 0.807496 GCTTTGACATGTGCTCCCTC 59.193 55.000 1.15 0.00 0.00 4.30
2388 2479 1.612726 GCTTTGACATGTGCTCCCTCT 60.613 52.381 1.15 0.00 0.00 3.69
2389 2480 2.082231 CTTTGACATGTGCTCCCTCTG 58.918 52.381 1.15 0.00 0.00 3.35
2390 2481 1.059098 TTGACATGTGCTCCCTCTGT 58.941 50.000 1.15 0.00 0.00 3.41
2391 2482 1.059098 TGACATGTGCTCCCTCTGTT 58.941 50.000 1.15 0.00 0.00 3.16
2392 2483 1.002430 TGACATGTGCTCCCTCTGTTC 59.998 52.381 1.15 0.00 0.00 3.18
2393 2484 0.326264 ACATGTGCTCCCTCTGTTCC 59.674 55.000 0.00 0.00 0.00 3.62
2394 2485 0.393537 CATGTGCTCCCTCTGTTCCC 60.394 60.000 0.00 0.00 0.00 3.97
2395 2486 0.548682 ATGTGCTCCCTCTGTTCCCT 60.549 55.000 0.00 0.00 0.00 4.20
2396 2487 0.116342 TGTGCTCCCTCTGTTCCCTA 59.884 55.000 0.00 0.00 0.00 3.53
2397 2488 1.276622 GTGCTCCCTCTGTTCCCTAA 58.723 55.000 0.00 0.00 0.00 2.69
2398 2489 1.840635 GTGCTCCCTCTGTTCCCTAAT 59.159 52.381 0.00 0.00 0.00 1.73
2399 2490 3.039011 GTGCTCCCTCTGTTCCCTAATA 58.961 50.000 0.00 0.00 0.00 0.98
2400 2491 3.648545 GTGCTCCCTCTGTTCCCTAATAT 59.351 47.826 0.00 0.00 0.00 1.28
2401 2492 4.838986 GTGCTCCCTCTGTTCCCTAATATA 59.161 45.833 0.00 0.00 0.00 0.86
2402 2493 5.307196 GTGCTCCCTCTGTTCCCTAATATAA 59.693 44.000 0.00 0.00 0.00 0.98
2403 2494 5.544176 TGCTCCCTCTGTTCCCTAATATAAG 59.456 44.000 0.00 0.00 0.00 1.73
2404 2495 5.780793 GCTCCCTCTGTTCCCTAATATAAGA 59.219 44.000 0.00 0.00 0.00 2.10
2405 2496 6.295405 GCTCCCTCTGTTCCCTAATATAAGAC 60.295 46.154 0.00 0.00 0.00 3.01
2406 2497 6.082707 TCCCTCTGTTCCCTAATATAAGACC 58.917 44.000 0.00 0.00 0.00 3.85
2407 2498 6.085416 CCCTCTGTTCCCTAATATAAGACCT 58.915 44.000 0.00 0.00 0.00 3.85
2408 2499 6.559157 CCCTCTGTTCCCTAATATAAGACCTT 59.441 42.308 0.00 0.00 0.00 3.50
2409 2500 7.072581 CCCTCTGTTCCCTAATATAAGACCTTT 59.927 40.741 0.00 0.00 0.00 3.11
2410 2501 8.495260 CCTCTGTTCCCTAATATAAGACCTTTT 58.505 37.037 0.00 0.00 0.00 2.27
2413 2504 9.274206 CTGTTCCCTAATATAAGACCTTTTAGC 57.726 37.037 0.00 0.00 0.00 3.09
2414 2505 8.999895 TGTTCCCTAATATAAGACCTTTTAGCT 58.000 33.333 0.00 0.00 0.00 3.32
2466 2557 9.128404 ACTAAAATGTGTCTAGATACATACGGA 57.872 33.333 28.78 16.46 41.35 4.69
2469 2560 7.761038 AATGTGTCTAGATACATACGGATCA 57.239 36.000 28.78 4.63 41.35 2.92
2470 2561 7.761038 ATGTGTCTAGATACATACGGATCAA 57.239 36.000 27.84 2.87 40.60 2.57
2471 2562 7.203255 TGTGTCTAGATACATACGGATCAAG 57.797 40.000 17.43 0.00 0.00 3.02
2472 2563 6.996282 TGTGTCTAGATACATACGGATCAAGA 59.004 38.462 17.43 0.00 0.00 3.02
2473 2564 7.501225 TGTGTCTAGATACATACGGATCAAGAA 59.499 37.037 17.43 0.00 0.00 2.52
2474 2565 8.350722 GTGTCTAGATACATACGGATCAAGAAA 58.649 37.037 14.20 0.00 0.00 2.52
2475 2566 8.909923 TGTCTAGATACATACGGATCAAGAAAA 58.090 33.333 0.00 0.00 0.00 2.29
2476 2567 9.745880 GTCTAGATACATACGGATCAAGAAAAA 57.254 33.333 0.00 0.00 0.00 1.94
2477 2568 9.967346 TCTAGATACATACGGATCAAGAAAAAG 57.033 33.333 0.00 0.00 0.00 2.27
2478 2569 7.484035 AGATACATACGGATCAAGAAAAAGC 57.516 36.000 0.00 0.00 0.00 3.51
2479 2570 7.275920 AGATACATACGGATCAAGAAAAAGCT 58.724 34.615 0.00 0.00 0.00 3.74
2480 2571 8.421784 AGATACATACGGATCAAGAAAAAGCTA 58.578 33.333 0.00 0.00 0.00 3.32
2481 2572 8.958119 ATACATACGGATCAAGAAAAAGCTAA 57.042 30.769 0.00 0.00 0.00 3.09
2482 2573 7.681939 ACATACGGATCAAGAAAAAGCTAAA 57.318 32.000 0.00 0.00 0.00 1.85
2483 2574 8.106247 ACATACGGATCAAGAAAAAGCTAAAA 57.894 30.769 0.00 0.00 0.00 1.52
2484 2575 8.237267 ACATACGGATCAAGAAAAAGCTAAAAG 58.763 33.333 0.00 0.00 0.00 2.27
2485 2576 6.013842 ACGGATCAAGAAAAAGCTAAAAGG 57.986 37.500 0.00 0.00 0.00 3.11
2486 2577 5.535030 ACGGATCAAGAAAAAGCTAAAAGGT 59.465 36.000 0.00 0.00 0.00 3.50
2487 2578 6.086871 CGGATCAAGAAAAAGCTAAAAGGTC 58.913 40.000 0.00 0.00 0.00 3.85
2488 2579 6.072452 CGGATCAAGAAAAAGCTAAAAGGTCT 60.072 38.462 0.00 0.00 0.00 3.85
2489 2580 7.522236 CGGATCAAGAAAAAGCTAAAAGGTCTT 60.522 37.037 0.00 0.00 0.00 3.01
2490 2581 8.793592 GGATCAAGAAAAAGCTAAAAGGTCTTA 58.206 33.333 0.00 0.00 0.00 2.10
2501 2592 9.848710 AAGCTAAAAGGTCTTATATTAGGGAAC 57.151 33.333 0.00 0.00 0.00 3.62
2502 2593 8.999895 AGCTAAAAGGTCTTATATTAGGGAACA 58.000 33.333 0.00 0.00 0.00 3.18
2503 2594 9.274206 GCTAAAAGGTCTTATATTAGGGAACAG 57.726 37.037 0.00 0.00 0.00 3.16
2506 2597 7.619512 AAGGTCTTATATTAGGGAACAGAGG 57.380 40.000 0.00 0.00 0.00 3.69
2507 2598 6.085416 AGGTCTTATATTAGGGAACAGAGGG 58.915 44.000 0.00 0.00 0.00 4.30
2508 2599 6.082707 GGTCTTATATTAGGGAACAGAGGGA 58.917 44.000 0.00 0.00 0.00 4.20
2509 2600 6.211785 GGTCTTATATTAGGGAACAGAGGGAG 59.788 46.154 0.00 0.00 0.00 4.30
2510 2601 6.783482 GTCTTATATTAGGGAACAGAGGGAGT 59.217 42.308 0.00 0.00 0.00 3.85
2526 2617 3.883489 AGGGAGTACTTCAAAGCAACAAC 59.117 43.478 2.92 0.00 0.00 3.32
2568 2705 6.801539 TTGGAGTTTGAATGTAGTTAGCTG 57.198 37.500 0.00 0.00 0.00 4.24
2575 2712 9.726438 AGTTTGAATGTAGTTAGCTGTAAGATT 57.274 29.630 0.00 0.00 34.07 2.40
2595 2732 3.848353 TTTTTCCAGCAGGGCTTCT 57.152 47.368 0.00 0.00 36.40 2.85
2596 2733 2.086610 TTTTTCCAGCAGGGCTTCTT 57.913 45.000 0.00 0.00 36.40 2.52
2597 2734 2.086610 TTTTCCAGCAGGGCTTCTTT 57.913 45.000 0.00 0.00 36.40 2.52
2598 2735 1.620822 TTTCCAGCAGGGCTTCTTTC 58.379 50.000 0.00 0.00 36.40 2.62
2599 2736 0.251341 TTCCAGCAGGGCTTCTTTCC 60.251 55.000 0.00 0.00 36.40 3.13
2600 2737 1.136329 TCCAGCAGGGCTTCTTTCCT 61.136 55.000 0.00 0.00 36.40 3.36
2601 2738 0.679321 CCAGCAGGGCTTCTTTCCTC 60.679 60.000 0.00 0.00 36.40 3.71
2602 2739 1.023513 CAGCAGGGCTTCTTTCCTCG 61.024 60.000 0.00 0.00 36.40 4.63
2603 2740 1.746991 GCAGGGCTTCTTTCCTCGG 60.747 63.158 0.00 0.00 0.00 4.63
2604 2741 1.983224 CAGGGCTTCTTTCCTCGGA 59.017 57.895 0.00 0.00 0.00 4.55
2605 2742 0.324943 CAGGGCTTCTTTCCTCGGAA 59.675 55.000 0.00 0.00 0.00 4.30
2606 2743 1.064825 AGGGCTTCTTTCCTCGGAAA 58.935 50.000 10.47 10.47 41.22 3.13
2607 2744 1.636003 AGGGCTTCTTTCCTCGGAAAT 59.364 47.619 11.26 0.00 42.34 2.17
2608 2745 2.844348 AGGGCTTCTTTCCTCGGAAATA 59.156 45.455 11.26 2.30 42.34 1.40
2609 2746 2.943690 GGGCTTCTTTCCTCGGAAATAC 59.056 50.000 11.26 2.58 42.34 1.89
2610 2747 3.370633 GGGCTTCTTTCCTCGGAAATACT 60.371 47.826 11.26 0.00 42.34 2.12
2613 2750 5.163744 GGCTTCTTTCCTCGGAAATACTTTC 60.164 44.000 11.26 0.89 42.34 2.62
2637 2774 0.773644 TCAGCAGGGCTTCTTTCCTT 59.226 50.000 0.00 0.00 36.40 3.36
2640 2777 1.253593 GCAGGGCTTCTTTCCTTGGG 61.254 60.000 0.00 0.00 32.01 4.12
2648 2785 4.882427 GGCTTCTTTCCTTGGGAATAGTAC 59.118 45.833 0.00 0.00 41.71 2.73
2706 2843 7.384115 CACTTGATGTTGAAATTCAGCTGATTT 59.616 33.333 19.04 17.43 0.00 2.17
2710 2847 6.349243 TGTTGAAATTCAGCTGATTTGGAT 57.651 33.333 19.04 4.43 0.00 3.41
2719 2856 8.985315 ATTCAGCTGATTTGGATAAATAGTCA 57.015 30.769 19.04 0.00 36.66 3.41
2721 2858 8.985315 TCAGCTGATTTGGATAAATAGTCAAT 57.015 30.769 13.74 0.00 36.66 2.57
2755 2892 9.463443 CTAACATAAAAGGAAGGTTTGACAAAG 57.537 33.333 0.00 0.00 0.00 2.77
2764 2901 8.584063 AGGAAGGTTTGACAAAGTACTAAAAA 57.416 30.769 0.00 0.00 0.00 1.94
2798 2935 7.270757 TGTCGATGATTGTTTAATAATGGGG 57.729 36.000 0.00 0.00 0.00 4.96
2818 2955 3.248266 GGACAAGACATCAAATGCAAGC 58.752 45.455 0.00 0.00 0.00 4.01
2896 3033 6.691754 ACACTGTTGTTGTGTTGAATCATA 57.308 33.333 0.00 0.00 45.11 2.15
2930 3069 6.042437 AGGCAATTTCCTATCCATTTCAATCC 59.958 38.462 0.00 0.00 33.95 3.01
2932 3071 7.447594 GCAATTTCCTATCCATTTCAATCCAT 58.552 34.615 0.00 0.00 0.00 3.41
3033 3217 4.753233 CTGAGACACCATAGAGAACCTTG 58.247 47.826 0.00 0.00 0.00 3.61
3055 3239 6.839124 TGGATTGATTGTGCTTTATGAACT 57.161 33.333 0.00 0.00 0.00 3.01
3056 3240 6.855836 TGGATTGATTGTGCTTTATGAACTC 58.144 36.000 0.00 0.00 0.00 3.01
3069 3253 7.609918 TGCTTTATGAACTCAGGCATTTAGTAA 59.390 33.333 0.00 0.00 0.00 2.24
3075 3259 8.177119 TGAACTCAGGCATTTAGTAATTTTGT 57.823 30.769 0.00 0.00 0.00 2.83
3083 3270 7.872483 AGGCATTTAGTAATTTTGTTTCTGGTG 59.128 33.333 0.00 0.00 0.00 4.17
3145 3332 0.249996 GGCATTGTGGCAAAGCAAGT 60.250 50.000 10.48 0.00 43.14 3.16
3196 3391 7.041721 TCCTCAGTGACACATGTATCATTTAC 58.958 38.462 10.54 0.00 0.00 2.01
3206 3401 7.011109 ACACATGTATCATTTACGCTTACCTTC 59.989 37.037 0.00 0.00 0.00 3.46
3335 3530 6.183361 ACAAATTCAATGATTTTGTGTCCCCT 60.183 34.615 25.85 8.04 41.43 4.79
3382 3577 7.499563 TCTCTGTATCTGCTTTCTATACGAGTT 59.500 37.037 0.00 0.00 33.49 3.01
3402 3597 6.950428 CGAGTTGAAAATGATTACTTCACTCG 59.050 38.462 18.44 18.44 40.24 4.18
3407 3602 7.077605 TGAAAATGATTACTTCACTCGCTTTG 58.922 34.615 0.00 0.00 37.11 2.77
3408 3603 4.606457 ATGATTACTTCACTCGCTTTGC 57.394 40.909 0.00 0.00 37.11 3.68
3625 3822 9.681062 AGGTTATGTACTTAGCACATGTATTTT 57.319 29.630 8.24 0.00 37.22 1.82
3637 3834 6.151144 AGCACATGTATTTTCTGTAGTTTCCC 59.849 38.462 0.00 0.00 0.00 3.97
3642 3839 5.702209 TGTATTTTCTGTAGTTTCCCGGTTC 59.298 40.000 0.00 0.00 0.00 3.62
3651 3848 7.120138 TCTGTAGTTTCCCGGTTCAATTTAATC 59.880 37.037 0.00 0.00 0.00 1.75
3758 3955 6.503524 ACAGATTTGTTGTTGTCATGGTAAC 58.496 36.000 0.00 0.00 32.28 2.50
3759 3956 6.321181 ACAGATTTGTTGTTGTCATGGTAACT 59.679 34.615 12.18 0.00 32.28 2.24
3761 3958 7.379529 CAGATTTGTTGTTGTCATGGTAACTTC 59.620 37.037 12.18 7.36 37.61 3.01
3762 3959 6.516739 TTTGTTGTTGTCATGGTAACTTCA 57.483 33.333 12.18 9.10 37.61 3.02
3764 3961 6.516739 TGTTGTTGTCATGGTAACTTCAAA 57.483 33.333 12.18 0.00 37.61 2.69
3948 4150 6.600882 TTTCTGTTAGATTCTTACCCGACT 57.399 37.500 0.69 0.00 0.00 4.18
3958 4160 7.565680 AGATTCTTACCCGACTATTGATTGTT 58.434 34.615 0.00 0.00 0.00 2.83
4149 4353 6.618805 GCTTTGTTAGCTAGTGTACAAGAAGC 60.619 42.308 14.44 14.44 46.77 3.86
4157 4361 5.388164 GCTAGTGTACAAGAAGCGTAAACAC 60.388 44.000 0.00 0.00 30.68 3.32
4158 4362 4.435425 AGTGTACAAGAAGCGTAAACACA 58.565 39.130 0.00 0.00 30.68 3.72
4221 4425 9.601217 TCTAGATTTTGTACTTATTCCTGCTTC 57.399 33.333 0.00 0.00 0.00 3.86
4246 4450 8.041323 TCTGGAGATTGTAAGTGAGGTTAAATC 58.959 37.037 0.00 0.00 0.00 2.17
4575 4788 9.585099 CATCCAGTAAGCTTTTATTTTTATGCA 57.415 29.630 3.20 0.00 0.00 3.96
5118 5333 7.854934 GTAGTTTGCTACATATTACTCTCGG 57.145 40.000 0.44 0.00 45.18 4.63
5125 5340 8.521170 TGCTACATATTACTCTCGGCTTATAT 57.479 34.615 0.00 0.00 0.00 0.86
5221 5436 6.249260 GTGTTTAGCATACTTTGAATCGCTTG 59.751 38.462 0.00 0.00 0.00 4.01
5245 5460 5.814783 AGCGAAAATATCTGAATCTTGTGC 58.185 37.500 0.00 0.00 0.00 4.57
5258 5473 6.851609 TGAATCTTGTGCATGTAAATGGTAC 58.148 36.000 0.00 0.00 0.00 3.34
5487 5702 4.024302 GTGTTCTTTTTAAGTCCCGGTCTG 60.024 45.833 0.00 0.00 0.00 3.51
5698 5913 6.262601 CAAAGGTGTGTATTTTGTTCGTCTT 58.737 36.000 0.00 0.00 0.00 3.01
5755 5971 4.927267 TGTAAGGACATGATGACCCTTT 57.073 40.909 21.57 10.16 36.22 3.11
5847 6069 5.841267 TGGTATATGGGCATCATACAGTT 57.159 39.130 1.80 0.00 40.75 3.16
5894 6256 6.938542 TGGCTTTAAAATTGCAGTTTTAACG 58.061 32.000 28.95 27.38 40.98 3.18
5923 6285 1.286880 GCTGATTGCGGTTTGCTGT 59.713 52.632 0.00 0.00 46.63 4.40
5946 6308 3.902150 TGTCTGAACTTCTGCTTCTACG 58.098 45.455 0.00 0.00 0.00 3.51
5958 6320 2.028112 TGCTTCTACGCACTTCCTTCAT 60.028 45.455 0.00 0.00 34.44 2.57
5962 6324 5.294552 GCTTCTACGCACTTCCTTCATTATT 59.705 40.000 0.00 0.00 0.00 1.40
6005 6367 5.751243 AATAATAACGGATGTCTGTTGGC 57.249 39.130 15.62 0.00 44.50 4.52
6030 6392 2.097825 GTGCAAAGGGAGCATCATCTT 58.902 47.619 0.00 0.00 44.79 2.40
6033 6395 2.947243 GCAAAGGGAGCATCATCTTCCA 60.947 50.000 0.00 0.00 33.98 3.53
6036 6398 0.182061 GGGAGCATCATCTTCCAGCA 59.818 55.000 0.00 0.00 36.25 4.41
6210 6572 2.795470 CGAGTGAGCAGACATCATGATG 59.205 50.000 29.95 29.95 44.15 3.07
6212 6574 2.770232 AGTGAGCAGACATCATGATGGA 59.230 45.455 33.31 10.25 42.91 3.41
6237 6612 2.707849 GGCTTCGGTCTCAGGCGTA 61.708 63.158 0.00 0.00 0.00 4.42
6247 6622 1.064240 TCTCAGGCGTAGATGGTGGTA 60.064 52.381 0.00 0.00 0.00 3.25
6265 6662 3.725797 TGGTAGCCAGTCTAGTAGGGTAT 59.274 47.826 11.06 0.06 37.67 2.73
6290 6690 9.927668 ATTTTATTGCTATATTGTACCCATTGC 57.072 29.630 0.00 0.00 0.00 3.56
6305 6705 3.181497 CCCATTGCTGTGTAACTGTATGC 60.181 47.826 0.00 0.00 38.15 3.14
6373 6782 5.279406 CCTTGTTGTAATGGCATGGAAAGAA 60.279 40.000 0.00 0.02 31.49 2.52
6386 6795 5.010012 GCATGGAAAGAATTCGGAATATGGT 59.990 40.000 3.22 0.00 36.36 3.55
6402 6815 2.124860 GTATGGTGGGGTGGTCGC 60.125 66.667 0.00 0.00 0.00 5.19
6403 6816 3.776781 TATGGTGGGGTGGTCGCG 61.777 66.667 0.00 0.00 0.00 5.87
6434 6847 8.023706 TCCTTGAGATGATTATCTATTCGTTCG 58.976 37.037 0.00 0.00 43.63 3.95
6437 6850 7.882179 TGAGATGATTATCTATTCGTTCGGAA 58.118 34.615 0.00 0.00 43.63 4.30
6440 6853 8.240682 AGATGATTATCTATTCGTTCGGAAGAG 58.759 37.037 0.00 0.00 43.73 2.85
6511 6928 2.504032 CTGGACCACCGTGTGTGT 59.496 61.111 0.00 1.96 43.85 3.72
6515 6932 1.947642 GACCACCGTGTGTGTCGTC 60.948 63.158 0.00 0.00 43.85 4.20
6519 6936 3.036084 CCGTGTGTGTCGTCTGCC 61.036 66.667 0.00 0.00 0.00 4.85
6528 6945 1.979693 GTCGTCTGCCAGAGGTCCT 60.980 63.158 13.61 0.00 32.36 3.85
6557 6987 1.962144 CAGCCCTCCTGTTTTGCTG 59.038 57.895 0.00 0.00 42.85 4.41
6558 6988 0.825010 CAGCCCTCCTGTTTTGCTGT 60.825 55.000 0.00 0.00 43.32 4.40
6580 7011 7.915397 GCTGTATGTGGAAGTGGTATTAATTTG 59.085 37.037 0.00 0.00 0.00 2.32
6586 7017 7.088272 GTGGAAGTGGTATTAATTTGGTGTTC 58.912 38.462 0.00 0.00 0.00 3.18
6587 7018 6.778069 TGGAAGTGGTATTAATTTGGTGTTCA 59.222 34.615 0.00 0.00 0.00 3.18
6589 7020 8.962679 GGAAGTGGTATTAATTTGGTGTTCATA 58.037 33.333 0.00 0.00 0.00 2.15
6592 7023 9.174166 AGTGGTATTAATTTGGTGTTCATAGAC 57.826 33.333 0.00 0.00 0.00 2.59
6625 7428 3.603965 TTTCATGGGTACAGTTTGGGT 57.396 42.857 0.00 0.00 0.00 4.51
6626 7429 2.577606 TCATGGGTACAGTTTGGGTG 57.422 50.000 0.00 0.00 0.00 4.61
6628 7431 0.608035 ATGGGTACAGTTTGGGTGCG 60.608 55.000 0.00 0.00 0.00 5.34
6629 7432 2.622962 GGGTACAGTTTGGGTGCGC 61.623 63.158 0.00 0.00 0.00 6.09
6642 7445 1.082756 GTGCGCACCTGTTTCTTCG 60.083 57.895 30.12 0.00 0.00 3.79
6643 7446 2.127232 GCGCACCTGTTTCTTCGC 60.127 61.111 0.30 0.00 35.82 4.70
6646 7449 1.144969 CGCACCTGTTTCTTCGCTTA 58.855 50.000 0.00 0.00 0.00 3.09
6647 7450 1.732259 CGCACCTGTTTCTTCGCTTAT 59.268 47.619 0.00 0.00 0.00 1.73
6653 7465 3.997021 CCTGTTTCTTCGCTTATGTCTGT 59.003 43.478 0.00 0.00 0.00 3.41
6655 7467 5.637810 CCTGTTTCTTCGCTTATGTCTGTAA 59.362 40.000 0.00 0.00 0.00 2.41
6675 7505 0.588233 CGAGCGATGCAGAAATGTGC 60.588 55.000 0.00 0.00 44.27 4.57
6676 7506 0.248377 GAGCGATGCAGAAATGTGCC 60.248 55.000 0.00 0.00 43.28 5.01
6687 7517 1.859427 AAATGTGCCTCGCAGCTGTG 61.859 55.000 21.43 21.43 40.08 3.66
6700 7562 2.440409 CAGCTGTGGAGGTTAAATGCT 58.560 47.619 5.25 0.00 0.00 3.79
6712 7574 5.857268 AGGTTAAATGCTGCTTCATGTTTT 58.143 33.333 0.00 0.00 0.00 2.43
6724 7586 2.164338 TCATGTTTTACCTTTCGGGGC 58.836 47.619 0.00 0.00 40.03 5.80
6729 7591 0.766131 TTTACCTTTCGGGGCTGTCA 59.234 50.000 0.00 0.00 40.03 3.58
6730 7592 0.988832 TTACCTTTCGGGGCTGTCAT 59.011 50.000 0.00 0.00 40.03 3.06
6734 7604 1.760613 CCTTTCGGGGCTGTCATACTA 59.239 52.381 0.00 0.00 0.00 1.82
6745 7615 7.203218 GGGGCTGTCATACTATTTTTCATTTC 58.797 38.462 0.00 0.00 0.00 2.17
6747 7617 6.912591 GGCTGTCATACTATTTTTCATTTCGG 59.087 38.462 0.00 0.00 0.00 4.30
6752 7622 7.753132 GTCATACTATTTTTCATTTCGGCAACA 59.247 33.333 0.00 0.00 0.00 3.33
6804 7674 4.446413 CCCGGACGGTTTCCCTCG 62.446 72.222 0.73 0.00 42.27 4.63
6866 7743 2.352805 GAGGGTGGAAGGGCACAG 59.647 66.667 0.00 0.00 0.00 3.66
6873 7750 2.671070 GAAGGGCACAGCTAGGCA 59.329 61.111 12.89 0.00 0.00 4.75
6875 7752 1.903877 GAAGGGCACAGCTAGGCAGA 61.904 60.000 12.89 0.00 0.00 4.26
6939 7818 9.512588 AAAAGAATATTGTTCTGTCTCATGTCT 57.487 29.630 0.00 0.00 0.00 3.41
6940 7819 8.715191 AAGAATATTGTTCTGTCTCATGTCTC 57.285 34.615 0.00 0.00 0.00 3.36
6941 7820 8.076910 AGAATATTGTTCTGTCTCATGTCTCT 57.923 34.615 0.00 0.00 0.00 3.10
6942 7821 8.196771 AGAATATTGTTCTGTCTCATGTCTCTC 58.803 37.037 0.00 0.00 0.00 3.20
6943 7822 4.527509 TTGTTCTGTCTCATGTCTCTCC 57.472 45.455 0.00 0.00 0.00 3.71
6944 7823 3.500343 TGTTCTGTCTCATGTCTCTCCA 58.500 45.455 0.00 0.00 0.00 3.86
6945 7824 4.092279 TGTTCTGTCTCATGTCTCTCCAT 58.908 43.478 0.00 0.00 0.00 3.41
6946 7825 4.081807 TGTTCTGTCTCATGTCTCTCCATG 60.082 45.833 0.00 0.00 42.89 3.66
6947 7826 2.429971 TCTGTCTCATGTCTCTCCATGC 59.570 50.000 0.00 0.00 41.60 4.06
6948 7827 1.483827 TGTCTCATGTCTCTCCATGCC 59.516 52.381 0.00 0.00 41.60 4.40
6949 7828 0.749049 TCTCATGTCTCTCCATGCCG 59.251 55.000 0.00 0.00 41.60 5.69
6950 7829 0.879400 CTCATGTCTCTCCATGCCGC 60.879 60.000 0.00 0.00 41.60 6.53
6951 7830 1.890979 CATGTCTCTCCATGCCGCC 60.891 63.158 0.00 0.00 36.15 6.13
6952 7831 3.451556 ATGTCTCTCCATGCCGCCG 62.452 63.158 0.00 0.00 0.00 6.46
6953 7832 4.148825 GTCTCTCCATGCCGCCGT 62.149 66.667 0.00 0.00 0.00 5.68
6985 7873 0.535780 TCTTGCCACTGCCACTCAAG 60.536 55.000 0.00 0.00 36.42 3.02
7022 8619 5.891551 GCAATAAGAAATTCTAGGTGGGGAA 59.108 40.000 0.00 0.00 0.00 3.97
7044 8662 6.311690 GGAACTTCGACCAAACAAATGAAAAA 59.688 34.615 0.00 0.00 0.00 1.94
7078 8696 1.084289 GGCGAGTCTGCCGTATTTTT 58.916 50.000 9.67 0.00 46.75 1.94
7131 8753 0.109226 GAGTCGTAAGCAAGTCGCCT 60.109 55.000 0.00 0.00 44.04 5.52
7205 8827 2.204034 TCACAGACCAGGAGCCCA 59.796 61.111 0.00 0.00 0.00 5.36
7206 8828 1.915266 TCACAGACCAGGAGCCCAG 60.915 63.158 0.00 0.00 0.00 4.45
7261 8883 5.408909 TCAATCATTGTAAACGTTCGGCTAA 59.591 36.000 0.00 0.00 0.00 3.09
7265 8887 6.670233 TCATTGTAAACGTTCGGCTAAAAAT 58.330 32.000 0.00 0.00 0.00 1.82
7266 8888 7.804712 TCATTGTAAACGTTCGGCTAAAAATA 58.195 30.769 0.00 0.00 0.00 1.40
7267 8889 8.452534 TCATTGTAAACGTTCGGCTAAAAATAT 58.547 29.630 0.00 0.00 0.00 1.28
7268 8890 9.705471 CATTGTAAACGTTCGGCTAAAAATATA 57.295 29.630 0.00 0.00 0.00 0.86
7269 8891 9.925268 ATTGTAAACGTTCGGCTAAAAATATAG 57.075 29.630 0.00 0.00 0.00 1.31
7270 8892 8.477984 TGTAAACGTTCGGCTAAAAATATAGT 57.522 30.769 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 185 2.043227 GCTTAGCTCATGTACCTCCCT 58.957 52.381 0.00 0.00 0.00 4.20
185 186 2.043227 AGCTTAGCTCATGTACCTCCC 58.957 52.381 0.00 0.00 30.62 4.30
705 733 9.749490 GTAAATATATAATTGCACGTGCGTTAT 57.251 29.630 33.76 33.76 45.83 1.89
706 734 8.980610 AGTAAATATATAATTGCACGTGCGTTA 58.019 29.630 33.22 30.56 45.83 3.18
952 996 2.043604 CTGTGAGGTGAGGTGGCACA 62.044 60.000 20.82 0.00 40.52 4.57
1076 1126 0.473501 GATCTCCATGGCTCCCCTCT 60.474 60.000 6.96 0.00 0.00 3.69
1196 1248 3.872603 CGGGGATGGCGAATGGGA 61.873 66.667 0.00 0.00 0.00 4.37
1204 1256 2.031768 GATCAGAGCGGGGATGGC 59.968 66.667 0.00 0.00 0.00 4.40
1209 1261 2.770048 AAGGGGATCAGAGCGGGG 60.770 66.667 0.00 0.00 0.00 5.73
1210 1262 1.764054 AGAAGGGGATCAGAGCGGG 60.764 63.158 0.00 0.00 0.00 6.13
1211 1263 1.445095 CAGAAGGGGATCAGAGCGG 59.555 63.158 0.00 0.00 0.00 5.52
1213 1265 0.545646 AAGCAGAAGGGGATCAGAGC 59.454 55.000 0.00 0.00 0.00 4.09
1215 1267 0.254178 GCAAGCAGAAGGGGATCAGA 59.746 55.000 0.00 0.00 0.00 3.27
1217 1269 0.034767 CAGCAAGCAGAAGGGGATCA 60.035 55.000 0.00 0.00 0.00 2.92
1245 1304 1.139058 AGAACAGGGGAATCGAATCGG 59.861 52.381 1.76 0.00 0.00 4.18
1312 1379 0.674895 GCTGGACATGGCGAAGAACT 60.675 55.000 4.11 0.00 0.00 3.01
1369 1437 1.561076 TCTACAGTACTAGCGGGACCA 59.439 52.381 0.00 0.00 0.00 4.02
1370 1438 2.338577 TCTACAGTACTAGCGGGACC 57.661 55.000 0.00 0.00 0.00 4.46
1371 1439 2.553172 CCATCTACAGTACTAGCGGGAC 59.447 54.545 0.00 0.00 0.00 4.46
1372 1440 2.440627 TCCATCTACAGTACTAGCGGGA 59.559 50.000 0.00 0.00 0.00 5.14
1373 1441 2.814919 CTCCATCTACAGTACTAGCGGG 59.185 54.545 0.00 0.00 0.00 6.13
1418 1492 3.469863 TTGAGGCGCGACAGGGTTT 62.470 57.895 17.71 0.00 0.00 3.27
1552 1631 4.381292 GCCAAAACATTCTAGAAGCAGCAT 60.381 41.667 11.53 0.00 0.00 3.79
1567 1646 5.009110 TCACAAATCGATAACAGCCAAAACA 59.991 36.000 0.00 0.00 0.00 2.83
1630 1710 1.186267 GGGATATCTCGTTCCCCGCT 61.186 60.000 2.05 0.00 45.08 5.52
1686 1766 9.928236 GAATAAGTAATCAACAGAGCTGATTTC 57.072 33.333 4.21 0.00 39.89 2.17
1883 1968 4.446719 GCTTGGATTTCTGAAAAGCAGTTG 59.553 41.667 15.89 3.39 45.14 3.16
1947 2032 5.319043 TGACTTCAGGTTTAAGGGTTCAT 57.681 39.130 0.00 0.00 0.00 2.57
1954 2039 4.702131 CCCAGGAATGACTTCAGGTTTAAG 59.298 45.833 0.00 0.00 32.70 1.85
1959 2044 0.995024 CCCCAGGAATGACTTCAGGT 59.005 55.000 0.00 0.00 32.70 4.00
1961 2046 2.191400 TCTCCCCAGGAATGACTTCAG 58.809 52.381 0.00 0.00 32.70 3.02
1966 2051 7.020827 TCATATATTTCTCCCCAGGAATGAC 57.979 40.000 0.00 0.00 29.70 3.06
1971 2056 4.913355 TGCTTCATATATTTCTCCCCAGGA 59.087 41.667 0.00 0.00 0.00 3.86
1974 2059 7.754624 TGTTATGCTTCATATATTTCTCCCCA 58.245 34.615 0.00 0.00 0.00 4.96
1996 2082 9.634163 GGAAATCCTACACGAAATAAAAATGTT 57.366 29.630 0.00 0.00 0.00 2.71
1997 2083 9.020731 AGGAAATCCTACACGAAATAAAAATGT 57.979 29.630 0.00 0.00 46.48 2.71
2062 2148 3.935828 GCACTACCTTCTTGGATGACTTC 59.064 47.826 0.00 0.00 39.71 3.01
2122 2209 8.421002 TGCAAGAGCTAGTGACACATATAATAA 58.579 33.333 8.59 0.00 42.74 1.40
2191 2281 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
2192 2282 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2193 2283 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2194 2284 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2195 2285 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2210 2300 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
2211 2301 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2212 2302 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2213 2303 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2214 2304 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
2215 2305 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
2216 2306 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
2222 2312 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
2223 2313 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
2224 2314 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
2225 2315 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
2226 2316 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
2240 2330 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2241 2331 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2242 2332 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2243 2333 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2244 2334 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2245 2335 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2246 2336 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2247 2337 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2248 2338 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2249 2339 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
2250 2340 8.242739 GCTACTCCCTCCGTAAACTAATATAAG 58.757 40.741 0.00 0.00 0.00 1.73
2251 2341 7.725397 TGCTACTCCCTCCGTAAACTAATATAA 59.275 37.037 0.00 0.00 0.00 0.98
2252 2342 7.233632 TGCTACTCCCTCCGTAAACTAATATA 58.766 38.462 0.00 0.00 0.00 0.86
2253 2343 6.073314 TGCTACTCCCTCCGTAAACTAATAT 58.927 40.000 0.00 0.00 0.00 1.28
2254 2344 5.448654 TGCTACTCCCTCCGTAAACTAATA 58.551 41.667 0.00 0.00 0.00 0.98
2255 2345 4.284178 TGCTACTCCCTCCGTAAACTAAT 58.716 43.478 0.00 0.00 0.00 1.73
2256 2346 3.700538 TGCTACTCCCTCCGTAAACTAA 58.299 45.455 0.00 0.00 0.00 2.24
2257 2347 3.370840 TGCTACTCCCTCCGTAAACTA 57.629 47.619 0.00 0.00 0.00 2.24
2258 2348 2.226962 TGCTACTCCCTCCGTAAACT 57.773 50.000 0.00 0.00 0.00 2.66
2259 2349 4.868314 ATATGCTACTCCCTCCGTAAAC 57.132 45.455 0.00 0.00 0.00 2.01
2260 2350 6.073314 AGTTATATGCTACTCCCTCCGTAAA 58.927 40.000 0.00 0.00 0.00 2.01
2261 2351 5.638133 AGTTATATGCTACTCCCTCCGTAA 58.362 41.667 0.00 0.00 0.00 3.18
2262 2352 5.252586 AGTTATATGCTACTCCCTCCGTA 57.747 43.478 0.00 0.00 0.00 4.02
2263 2353 4.115398 AGTTATATGCTACTCCCTCCGT 57.885 45.455 0.00 0.00 0.00 4.69
2264 2354 5.230942 CAAAGTTATATGCTACTCCCTCCG 58.769 45.833 0.00 0.00 0.00 4.63
2265 2355 4.998033 GCAAAGTTATATGCTACTCCCTCC 59.002 45.833 0.00 0.00 39.46 4.30
2290 2380 9.734620 CTCAGAGTACATTTGTTCATTCAAAAA 57.265 29.630 0.00 0.00 40.05 1.94
2380 2471 5.780793 TCTTATATTAGGGAACAGAGGGAGC 59.219 44.000 0.00 0.00 0.00 4.70
2381 2472 6.211785 GGTCTTATATTAGGGAACAGAGGGAG 59.788 46.154 0.00 0.00 0.00 4.30
2382 2473 6.082707 GGTCTTATATTAGGGAACAGAGGGA 58.917 44.000 0.00 0.00 0.00 4.20
2383 2474 6.085416 AGGTCTTATATTAGGGAACAGAGGG 58.915 44.000 0.00 0.00 0.00 4.30
2384 2475 7.619512 AAGGTCTTATATTAGGGAACAGAGG 57.380 40.000 0.00 0.00 0.00 3.69
2387 2478 9.274206 GCTAAAAGGTCTTATATTAGGGAACAG 57.726 37.037 0.00 0.00 0.00 3.16
2388 2479 8.999895 AGCTAAAAGGTCTTATATTAGGGAACA 58.000 33.333 0.00 0.00 0.00 3.18
2440 2531 9.128404 TCCGTATGTATCTAGACACATTTTAGT 57.872 33.333 21.14 0.00 36.74 2.24
2443 2534 8.638873 TGATCCGTATGTATCTAGACACATTTT 58.361 33.333 21.14 1.46 36.74 1.82
2444 2535 8.178313 TGATCCGTATGTATCTAGACACATTT 57.822 34.615 21.14 2.21 36.74 2.32
2445 2536 7.761038 TGATCCGTATGTATCTAGACACATT 57.239 36.000 21.14 3.51 36.74 2.71
2446 2537 7.665974 TCTTGATCCGTATGTATCTAGACACAT 59.334 37.037 19.95 19.95 38.81 3.21
2447 2538 6.996282 TCTTGATCCGTATGTATCTAGACACA 59.004 38.462 6.26 6.26 31.81 3.72
2448 2539 7.436430 TCTTGATCCGTATGTATCTAGACAC 57.564 40.000 0.00 0.00 31.81 3.67
2449 2540 8.459911 TTTCTTGATCCGTATGTATCTAGACA 57.540 34.615 0.00 0.00 34.95 3.41
2450 2541 9.745880 TTTTTCTTGATCCGTATGTATCTAGAC 57.254 33.333 0.00 0.00 34.95 2.59
2451 2542 9.967346 CTTTTTCTTGATCCGTATGTATCTAGA 57.033 33.333 0.00 0.00 33.90 2.43
2452 2543 8.704234 GCTTTTTCTTGATCCGTATGTATCTAG 58.296 37.037 0.00 0.00 0.00 2.43
2453 2544 8.421784 AGCTTTTTCTTGATCCGTATGTATCTA 58.578 33.333 0.00 0.00 0.00 1.98
2454 2545 7.275920 AGCTTTTTCTTGATCCGTATGTATCT 58.724 34.615 0.00 0.00 0.00 1.98
2455 2546 7.484035 AGCTTTTTCTTGATCCGTATGTATC 57.516 36.000 0.00 0.00 0.00 2.24
2456 2547 8.958119 TTAGCTTTTTCTTGATCCGTATGTAT 57.042 30.769 0.00 0.00 0.00 2.29
2457 2548 8.780846 TTTAGCTTTTTCTTGATCCGTATGTA 57.219 30.769 0.00 0.00 0.00 2.29
2458 2549 7.681939 TTTAGCTTTTTCTTGATCCGTATGT 57.318 32.000 0.00 0.00 0.00 2.29
2459 2550 7.698130 CCTTTTAGCTTTTTCTTGATCCGTATG 59.302 37.037 0.00 0.00 0.00 2.39
2460 2551 7.393515 ACCTTTTAGCTTTTTCTTGATCCGTAT 59.606 33.333 0.00 0.00 0.00 3.06
2461 2552 6.713450 ACCTTTTAGCTTTTTCTTGATCCGTA 59.287 34.615 0.00 0.00 0.00 4.02
2462 2553 5.535030 ACCTTTTAGCTTTTTCTTGATCCGT 59.465 36.000 0.00 0.00 0.00 4.69
2463 2554 6.013842 ACCTTTTAGCTTTTTCTTGATCCG 57.986 37.500 0.00 0.00 0.00 4.18
2464 2555 7.220741 AGACCTTTTAGCTTTTTCTTGATCC 57.779 36.000 0.00 0.00 0.00 3.36
2475 2566 9.848710 GTTCCCTAATATAAGACCTTTTAGCTT 57.151 33.333 0.00 0.00 0.00 3.74
2476 2567 8.999895 TGTTCCCTAATATAAGACCTTTTAGCT 58.000 33.333 0.00 0.00 0.00 3.32
2477 2568 9.274206 CTGTTCCCTAATATAAGACCTTTTAGC 57.726 37.037 0.00 0.00 0.00 3.09
2480 2571 8.495260 CCTCTGTTCCCTAATATAAGACCTTTT 58.505 37.037 0.00 0.00 0.00 2.27
2481 2572 7.072581 CCCTCTGTTCCCTAATATAAGACCTTT 59.927 40.741 0.00 0.00 0.00 3.11
2482 2573 6.559157 CCCTCTGTTCCCTAATATAAGACCTT 59.441 42.308 0.00 0.00 0.00 3.50
2483 2574 6.085416 CCCTCTGTTCCCTAATATAAGACCT 58.915 44.000 0.00 0.00 0.00 3.85
2484 2575 6.082707 TCCCTCTGTTCCCTAATATAAGACC 58.917 44.000 0.00 0.00 0.00 3.85
2485 2576 6.783482 ACTCCCTCTGTTCCCTAATATAAGAC 59.217 42.308 0.00 0.00 0.00 3.01
2486 2577 6.935036 ACTCCCTCTGTTCCCTAATATAAGA 58.065 40.000 0.00 0.00 0.00 2.10
2487 2578 7.951245 AGTACTCCCTCTGTTCCCTAATATAAG 59.049 40.741 0.00 0.00 0.00 1.73
2488 2579 7.834046 AGTACTCCCTCTGTTCCCTAATATAA 58.166 38.462 0.00 0.00 0.00 0.98
2489 2580 7.417811 AGTACTCCCTCTGTTCCCTAATATA 57.582 40.000 0.00 0.00 0.00 0.86
2490 2581 6.296435 AGTACTCCCTCTGTTCCCTAATAT 57.704 41.667 0.00 0.00 0.00 1.28
2491 2582 5.745988 AGTACTCCCTCTGTTCCCTAATA 57.254 43.478 0.00 0.00 0.00 0.98
2492 2583 4.628661 AGTACTCCCTCTGTTCCCTAAT 57.371 45.455 0.00 0.00 0.00 1.73
2493 2584 4.202749 TGAAGTACTCCCTCTGTTCCCTAA 60.203 45.833 0.00 0.00 0.00 2.69
2494 2585 3.335786 TGAAGTACTCCCTCTGTTCCCTA 59.664 47.826 0.00 0.00 0.00 3.53
2495 2586 2.111972 TGAAGTACTCCCTCTGTTCCCT 59.888 50.000 0.00 0.00 0.00 4.20
2496 2587 2.537143 TGAAGTACTCCCTCTGTTCCC 58.463 52.381 0.00 0.00 0.00 3.97
2497 2588 4.570930 CTTTGAAGTACTCCCTCTGTTCC 58.429 47.826 0.00 0.00 0.00 3.62
2498 2589 3.997681 GCTTTGAAGTACTCCCTCTGTTC 59.002 47.826 0.00 0.00 0.00 3.18
2499 2590 3.391296 TGCTTTGAAGTACTCCCTCTGTT 59.609 43.478 0.00 0.00 0.00 3.16
2500 2591 2.972713 TGCTTTGAAGTACTCCCTCTGT 59.027 45.455 0.00 0.00 0.00 3.41
2501 2592 3.685139 TGCTTTGAAGTACTCCCTCTG 57.315 47.619 0.00 0.00 0.00 3.35
2502 2593 3.391296 TGTTGCTTTGAAGTACTCCCTCT 59.609 43.478 0.00 0.00 0.00 3.69
2503 2594 3.740115 TGTTGCTTTGAAGTACTCCCTC 58.260 45.455 0.00 0.00 0.00 4.30
2504 2595 3.857157 TGTTGCTTTGAAGTACTCCCT 57.143 42.857 0.00 0.00 0.00 4.20
2505 2596 3.630312 TGTTGTTGCTTTGAAGTACTCCC 59.370 43.478 0.00 0.00 0.00 4.30
2506 2597 4.095782 TGTGTTGTTGCTTTGAAGTACTCC 59.904 41.667 0.00 0.00 0.00 3.85
2507 2598 5.229921 TGTGTTGTTGCTTTGAAGTACTC 57.770 39.130 0.00 0.00 0.00 2.59
2508 2599 5.393027 CCTTGTGTTGTTGCTTTGAAGTACT 60.393 40.000 0.00 0.00 0.00 2.73
2509 2600 4.798387 CCTTGTGTTGTTGCTTTGAAGTAC 59.202 41.667 0.00 0.00 0.00 2.73
2510 2601 4.142271 CCCTTGTGTTGTTGCTTTGAAGTA 60.142 41.667 0.00 0.00 0.00 2.24
2526 2617 3.243839 CCAAAATGAACAGGACCCTTGTG 60.244 47.826 0.00 0.00 0.00 3.33
2577 2714 2.086610 AAGAAGCCCTGCTGGAAAAA 57.913 45.000 11.88 0.00 39.62 1.94
2578 2715 1.963515 GAAAGAAGCCCTGCTGGAAAA 59.036 47.619 11.88 0.00 39.62 2.29
2582 2719 0.679321 GAGGAAAGAAGCCCTGCTGG 60.679 60.000 1.89 1.89 39.62 4.85
2583 2720 1.023513 CGAGGAAAGAAGCCCTGCTG 61.024 60.000 0.00 0.00 39.62 4.41
2584 2721 1.298014 CGAGGAAAGAAGCCCTGCT 59.702 57.895 0.00 0.00 42.56 4.24
2585 2722 1.746991 CCGAGGAAAGAAGCCCTGC 60.747 63.158 0.00 0.00 31.84 4.85
2586 2723 0.324943 TTCCGAGGAAAGAAGCCCTG 59.675 55.000 1.44 0.00 31.84 4.45
2588 2725 2.130272 ATTTCCGAGGAAAGAAGCCC 57.870 50.000 20.27 0.00 45.66 5.19
2590 2727 5.881777 AAAGTATTTCCGAGGAAAGAAGC 57.118 39.130 20.27 11.18 45.66 3.86
2602 2739 9.354582 AGCCCTGCTGAAAAAGAAAGTATTTCC 62.355 40.741 0.00 0.00 46.90 3.13
2603 2740 6.517362 AGCCCTGCTGAAAAAGAAAGTATTTC 60.517 38.462 0.00 0.00 46.41 2.17
2604 2741 5.305386 AGCCCTGCTGAAAAAGAAAGTATTT 59.695 36.000 0.00 0.00 38.34 1.40
2605 2742 4.835056 AGCCCTGCTGAAAAAGAAAGTATT 59.165 37.500 0.00 0.00 37.57 1.89
2606 2743 4.411013 AGCCCTGCTGAAAAAGAAAGTAT 58.589 39.130 0.00 0.00 37.57 2.12
2607 2744 3.832527 AGCCCTGCTGAAAAAGAAAGTA 58.167 40.909 0.00 0.00 37.57 2.24
2608 2745 2.670939 AGCCCTGCTGAAAAAGAAAGT 58.329 42.857 0.00 0.00 37.57 2.66
2609 2746 3.320256 AGAAGCCCTGCTGAAAAAGAAAG 59.680 43.478 0.00 0.00 39.62 2.62
2610 2747 3.299503 AGAAGCCCTGCTGAAAAAGAAA 58.700 40.909 0.00 0.00 39.62 2.52
2613 2750 3.553715 GGAAAGAAGCCCTGCTGAAAAAG 60.554 47.826 0.00 0.00 39.62 2.27
2669 2806 4.274214 TCAACATCAAGTGCTGTTTCTCTG 59.726 41.667 0.00 0.00 32.73 3.35
2675 2812 5.904941 TGAATTTCAACATCAAGTGCTGTT 58.095 33.333 0.00 0.00 35.06 3.16
2778 2915 8.912988 TCTTGTCCCCATTATTAAACAATCATC 58.087 33.333 0.00 0.00 0.00 2.92
2787 2924 8.694540 CATTTGATGTCTTGTCCCCATTATTAA 58.305 33.333 0.00 0.00 0.00 1.40
2794 2931 2.170166 GCATTTGATGTCTTGTCCCCA 58.830 47.619 0.00 0.00 0.00 4.96
2798 2935 3.248266 GGCTTGCATTTGATGTCTTGTC 58.752 45.455 0.00 0.00 0.00 3.18
2812 2949 3.491276 GCTGCATACATAAATGGCTTGCA 60.491 43.478 12.85 12.85 38.10 4.08
2813 2950 3.054878 GCTGCATACATAAATGGCTTGC 58.945 45.455 0.00 6.93 34.09 4.01
2896 3033 8.551682 TGGATAGGAAATTGCCTTAAAATGAT 57.448 30.769 11.26 0.00 39.50 2.45
2930 3069 7.113965 GTGTTCAAGTTCATTAACTGAAGCATG 59.886 37.037 0.00 0.00 45.37 4.06
2932 3071 6.094742 TGTGTTCAAGTTCATTAACTGAAGCA 59.905 34.615 0.00 1.11 45.37 3.91
2966 3106 4.632688 GGTACGCTTCAGCCAAATTAAGTA 59.367 41.667 0.00 0.00 37.91 2.24
2976 3116 4.504132 CTGAGGTACGCTTCAGCC 57.496 61.111 7.46 0.00 40.98 4.85
3033 3217 6.855836 TGAGTTCATAAAGCACAATCAATCC 58.144 36.000 0.00 0.00 0.00 3.01
3055 3239 8.087750 CCAGAAACAAAATTACTAAATGCCTGA 58.912 33.333 0.00 0.00 0.00 3.86
3056 3240 7.872483 ACCAGAAACAAAATTACTAAATGCCTG 59.128 33.333 0.00 0.00 0.00 4.85
3069 3253 7.599998 GCAATGTCTAATCACCAGAAACAAAAT 59.400 33.333 0.00 0.00 0.00 1.82
3072 3256 5.534278 TGCAATGTCTAATCACCAGAAACAA 59.466 36.000 0.00 0.00 0.00 2.83
3073 3257 5.069318 TGCAATGTCTAATCACCAGAAACA 58.931 37.500 0.00 0.00 0.00 2.83
3074 3258 5.412594 TCTGCAATGTCTAATCACCAGAAAC 59.587 40.000 0.00 0.00 0.00 2.78
3075 3259 5.412594 GTCTGCAATGTCTAATCACCAGAAA 59.587 40.000 0.00 0.00 30.84 2.52
3196 3391 5.622770 AAACACCATAAAGAAGGTAAGCG 57.377 39.130 0.00 0.00 36.07 4.68
3382 3577 6.801539 AAGCGAGTGAAGTAATCATTTTCA 57.198 33.333 0.00 0.00 40.97 2.69
3402 3597 5.034797 GGAAGGAATATAAACACGCAAAGC 58.965 41.667 0.00 0.00 0.00 3.51
3407 3602 7.492352 ACATTAGGAAGGAATATAAACACGC 57.508 36.000 0.00 0.00 0.00 5.34
3420 3617 6.058183 CCACAAGGAGATAACATTAGGAAGG 58.942 44.000 0.00 0.00 36.89 3.46
3483 3680 4.402155 ACTGTTTGTCTGCAAAATGAAGGA 59.598 37.500 0.00 0.00 45.01 3.36
3487 3684 4.979943 TCACTGTTTGTCTGCAAAATGA 57.020 36.364 0.00 0.00 45.01 2.57
3625 3822 4.360951 AATTGAACCGGGAAACTACAGA 57.639 40.909 6.32 0.00 0.00 3.41
3651 3848 7.889589 TTGTCAGTTTGTCTCATAGTATGTG 57.110 36.000 9.94 7.86 0.00 3.21
3892 4094 3.593096 TGCATGAAGAGTTGTAGAGCTG 58.407 45.455 0.00 0.00 0.00 4.24
3948 4150 5.010516 CACCAACAGTCCCAAACAATCAATA 59.989 40.000 0.00 0.00 0.00 1.90
3958 4160 0.754957 CAAGCCACCAACAGTCCCAA 60.755 55.000 0.00 0.00 0.00 4.12
4149 4353 2.671396 GACTACTGGGCATGTGTTTACG 59.329 50.000 0.00 0.00 0.00 3.18
4157 4361 5.431765 AGTTAATCTTGACTACTGGGCATG 58.568 41.667 0.00 0.00 30.17 4.06
4158 4362 5.700402 AGTTAATCTTGACTACTGGGCAT 57.300 39.130 0.00 0.00 30.17 4.40
4221 4425 7.010552 CGATTTAACCTCACTTACAATCTCCAG 59.989 40.741 0.00 0.00 0.00 3.86
4246 4450 6.791887 AATGAATCAATAGTGTCCATAGCG 57.208 37.500 0.00 0.00 0.00 4.26
4575 4788 7.164122 CAGATAACCATGTGCCTTCTACATAT 58.836 38.462 0.00 0.00 36.67 1.78
4576 4789 6.464322 CCAGATAACCATGTGCCTTCTACATA 60.464 42.308 0.00 0.00 36.67 2.29
4646 4860 1.593196 CACCAGGTGTGTCGACAAAT 58.407 50.000 21.95 3.40 40.26 2.32
5026 5240 4.134379 TGGTTACCCAATATAAACGCGA 57.866 40.909 15.93 0.00 37.98 5.87
5048 5263 4.046286 ACAAAGTAAATGAGGGCATGGA 57.954 40.909 0.00 0.00 34.26 3.41
5182 5397 5.376625 TGCTAAACACTCCACTGAGATTTT 58.623 37.500 0.00 0.00 41.42 1.82
5183 5398 4.973168 TGCTAAACACTCCACTGAGATTT 58.027 39.130 0.00 0.38 41.42 2.17
5184 5399 4.623932 TGCTAAACACTCCACTGAGATT 57.376 40.909 0.00 0.00 41.42 2.40
5221 5436 5.906285 GCACAAGATTCAGATATTTTCGCTC 59.094 40.000 0.00 0.00 0.00 5.03
5245 5460 4.843728 ACCCAGTCAGTACCATTTACATG 58.156 43.478 0.00 0.00 0.00 3.21
5698 5913 4.101898 TGTGGACTGGCTACAAAGTTAGAA 59.898 41.667 0.00 0.00 34.81 2.10
5730 5946 3.316308 GGGTCATCATGTCCTTACAATGC 59.684 47.826 0.64 0.00 39.58 3.56
5755 5971 2.356125 GGGCTCCATCTTAACAGAAGCA 60.356 50.000 0.00 0.00 30.76 3.91
5847 6069 2.706723 TGGTGGTCTGGCAAGTAGTAAA 59.293 45.455 0.00 0.00 0.00 2.01
5914 6276 2.565841 AGTTCAGACAGACAGCAAACC 58.434 47.619 0.00 0.00 0.00 3.27
5923 6285 4.320567 CGTAGAAGCAGAAGTTCAGACAGA 60.321 45.833 5.50 0.00 0.00 3.41
6005 6367 0.896940 ATGCTCCCTTTGCACCTGTG 60.897 55.000 0.00 0.00 43.59 3.66
6021 6383 0.822532 CCCCTGCTGGAAGATGATGC 60.823 60.000 11.88 0.00 34.07 3.91
6227 6600 0.324368 ACCACCATCTACGCCTGAGA 60.324 55.000 0.00 0.00 0.00 3.27
6228 6601 1.338337 CTACCACCATCTACGCCTGAG 59.662 57.143 0.00 0.00 0.00 3.35
6237 6612 2.023888 ACTAGACTGGCTACCACCATCT 60.024 50.000 0.00 0.00 39.54 2.90
6247 6622 7.689559 GCAATAAAATACCCTACTAGACTGGCT 60.690 40.741 0.00 0.00 0.00 4.75
6265 6662 9.142014 AGCAATGGGTACAATATAGCAATAAAA 57.858 29.630 0.00 0.00 0.00 1.52
6276 6676 5.645929 CAGTTACACAGCAATGGGTACAATA 59.354 40.000 0.00 0.00 0.00 1.90
6278 6678 3.818210 CAGTTACACAGCAATGGGTACAA 59.182 43.478 0.00 0.00 0.00 2.41
6290 6690 5.235186 GGCTCTTATGCATACAGTTACACAG 59.765 44.000 5.74 0.00 34.04 3.66
6305 6705 3.703420 GCAATTGCTTCTGGCTCTTATG 58.297 45.455 23.21 0.00 42.39 1.90
6330 6739 1.244019 GCCGTTCTCCAGCCAACAAT 61.244 55.000 0.00 0.00 0.00 2.71
6373 6782 3.010138 CCCCACCATACCATATTCCGAAT 59.990 47.826 0.00 0.00 0.00 3.34
6386 6795 3.776781 CGCGACCACCCCACCATA 61.777 66.667 0.00 0.00 0.00 2.74
6402 6815 9.650539 AATAGATAATCATCTCAAGGATCAACG 57.349 33.333 0.00 0.00 40.81 4.10
6404 6817 9.866798 CGAATAGATAATCATCTCAAGGATCAA 57.133 33.333 0.00 0.00 40.81 2.57
6434 6847 1.461559 AGCATTCAAGCTGCTCTTCC 58.538 50.000 1.00 0.00 46.79 3.46
6440 6853 1.269936 ACCAACAAGCATTCAAGCTGC 60.270 47.619 0.00 0.00 45.89 5.25
6456 6873 0.396435 AGTTGACTGGATCGCACCAA 59.604 50.000 2.43 0.00 39.59 3.67
6483 6900 1.446907 GTGGTCCAGCACTCTTCATG 58.553 55.000 0.00 0.00 0.00 3.07
6511 6928 0.832135 AAAGGACCTCTGGCAGACGA 60.832 55.000 14.43 0.00 0.00 4.20
6515 6932 1.818642 CAGAAAAGGACCTCTGGCAG 58.181 55.000 8.58 8.58 36.27 4.85
6519 6936 1.339535 GCTCCCAGAAAAGGACCTCTG 60.340 57.143 0.00 0.00 39.06 3.35
6557 6987 8.188139 CACCAAATTAATACCACTTCCACATAC 58.812 37.037 0.00 0.00 0.00 2.39
6558 6988 7.891183 ACACCAAATTAATACCACTTCCACATA 59.109 33.333 0.00 0.00 0.00 2.29
6580 7011 5.830991 AGGTGATCTCTAGTCTATGAACACC 59.169 44.000 21.69 21.69 46.12 4.16
6586 7017 7.871973 CCATGAAAAGGTGATCTCTAGTCTATG 59.128 40.741 0.00 0.00 0.00 2.23
6587 7018 7.016072 CCCATGAAAAGGTGATCTCTAGTCTAT 59.984 40.741 0.00 0.00 0.00 1.98
6589 7020 5.130145 CCCATGAAAAGGTGATCTCTAGTCT 59.870 44.000 0.00 0.00 0.00 3.24
6592 7023 5.365021 ACCCATGAAAAGGTGATCTCTAG 57.635 43.478 0.00 0.00 34.20 2.43
6625 7428 2.892334 GCGAAGAAACAGGTGCGCA 61.892 57.895 5.66 5.66 43.45 6.09
6626 7429 2.117941 AAGCGAAGAAACAGGTGCGC 62.118 55.000 0.00 0.00 44.22 6.09
6628 7431 2.484264 ACATAAGCGAAGAAACAGGTGC 59.516 45.455 0.00 0.00 0.00 5.01
6629 7432 3.997021 AGACATAAGCGAAGAAACAGGTG 59.003 43.478 0.00 0.00 0.00 4.00
6640 7443 2.790123 CGCTCGTTACAGACATAAGCGA 60.790 50.000 8.02 0.00 46.09 4.93
6642 7445 2.793933 TCGCTCGTTACAGACATAAGC 58.206 47.619 0.00 0.00 0.00 3.09
6643 7446 3.180584 GCATCGCTCGTTACAGACATAAG 59.819 47.826 0.00 0.00 0.00 1.73
6646 7449 1.135112 TGCATCGCTCGTTACAGACAT 60.135 47.619 0.00 0.00 0.00 3.06
6647 7450 0.242555 TGCATCGCTCGTTACAGACA 59.757 50.000 0.00 0.00 0.00 3.41
6653 7465 2.348362 CACATTTCTGCATCGCTCGTTA 59.652 45.455 0.00 0.00 0.00 3.18
6655 7467 0.723414 CACATTTCTGCATCGCTCGT 59.277 50.000 0.00 0.00 0.00 4.18
6676 7506 0.037326 TTAACCTCCACAGCTGCGAG 60.037 55.000 15.27 18.08 0.00 5.03
6687 7517 3.445096 ACATGAAGCAGCATTTAACCTCC 59.555 43.478 0.00 0.00 0.00 4.30
6724 7586 7.471721 TGCCGAAATGAAAAATAGTATGACAG 58.528 34.615 0.00 0.00 0.00 3.51
6729 7591 7.257722 CCTGTTGCCGAAATGAAAAATAGTAT 58.742 34.615 0.00 0.00 0.00 2.12
6730 7592 6.616947 CCTGTTGCCGAAATGAAAAATAGTA 58.383 36.000 0.00 0.00 0.00 1.82
6734 7604 3.066380 GCCTGTTGCCGAAATGAAAAAT 58.934 40.909 0.00 0.00 0.00 1.82
6745 7615 1.526464 GTTCAAAAATGCCTGTTGCCG 59.474 47.619 0.00 0.00 40.16 5.69
6747 7617 2.559440 TGGTTCAAAAATGCCTGTTGC 58.441 42.857 0.00 0.00 41.77 4.17
6752 7622 6.324770 CCTTATCCTATGGTTCAAAAATGCCT 59.675 38.462 0.00 0.00 0.00 4.75
6804 7674 2.763448 AGAGGTGTGCTAAGATGAGGAC 59.237 50.000 0.00 0.00 38.21 3.85
6866 7743 2.893637 TGACTTCGAATTCTGCCTAGC 58.106 47.619 15.49 0.00 0.00 3.42
6873 7750 8.571336 ACAATCATTCTTTTGACTTCGAATTCT 58.429 29.630 15.49 0.00 0.00 2.40
6875 7752 7.809806 GGACAATCATTCTTTTGACTTCGAATT 59.190 33.333 0.00 0.00 0.00 2.17
6937 7816 4.147449 CACGGCGGCATGGAGAGA 62.147 66.667 13.24 0.00 0.00 3.10
6948 7827 4.794439 TCGACATGGAGCACGGCG 62.794 66.667 4.80 4.80 0.00 6.46
6949 7828 2.202932 ATCGACATGGAGCACGGC 60.203 61.111 0.00 0.00 0.00 5.68
6950 7829 0.179100 AAGATCGACATGGAGCACGG 60.179 55.000 0.00 0.00 0.00 4.94
6951 7830 0.926155 CAAGATCGACATGGAGCACG 59.074 55.000 0.00 0.00 0.00 5.34
6952 7831 0.654683 GCAAGATCGACATGGAGCAC 59.345 55.000 0.00 0.00 0.00 4.40
6953 7832 0.462581 GGCAAGATCGACATGGAGCA 60.463 55.000 0.00 0.00 0.00 4.26
7022 8619 5.290885 GCTTTTTCATTTGTTTGGTCGAAGT 59.709 36.000 0.00 0.00 0.00 3.01
7268 8890 9.880157 TTTCTTTTTAGTGGCGTCTAATATACT 57.120 29.630 0.00 0.00 31.28 2.12
7273 8895 7.266922 TGTTTTCTTTTTAGTGGCGTCTAAT 57.733 32.000 0.00 0.00 31.28 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.