Multiple sequence alignment - TraesCS7D01G430400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G430400 chr7D 100.000 2618 0 0 1 2618 549705159 549707776 0.000000e+00 4835.0
1 TraesCS7D01G430400 chr7D 84.304 1803 219 39 160 1922 549697256 549699034 0.000000e+00 1703.0
2 TraesCS7D01G430400 chr7D 83.268 1799 245 31 117 1878 549783140 549784919 0.000000e+00 1604.0
3 TraesCS7D01G430400 chr7D 84.091 1672 228 19 124 1773 549770400 549772055 0.000000e+00 1580.0
4 TraesCS7D01G430400 chr7D 81.188 606 86 16 180 762 549743562 549744162 1.840000e-126 462.0
5 TraesCS7D01G430400 chr7D 87.037 108 14 0 1771 1878 549772080 549772187 3.540000e-24 122.0
6 TraesCS7D01G430400 chr7B 89.730 2668 191 33 1 2618 594048100 594050734 0.000000e+00 3332.0
7 TraesCS7D01G430400 chr7B 83.473 1670 240 22 124 1773 594063484 594065137 0.000000e+00 1522.0
8 TraesCS7D01G430400 chr7B 82.979 376 55 6 1911 2277 594044067 594044442 5.400000e-87 331.0
9 TraesCS7D01G430400 chr7B 79.292 367 61 6 1924 2277 594056789 594057153 2.600000e-60 243.0
10 TraesCS7D01G430400 chr7A 92.416 1912 106 13 94 1981 635093958 635095854 0.000000e+00 2691.0
11 TraesCS7D01G430400 chr7A 85.128 1802 216 30 159 1922 635074709 635076496 0.000000e+00 1796.0
12 TraesCS7D01G430400 chr7A 82.741 1744 237 22 184 1878 635241129 635242857 0.000000e+00 1495.0
13 TraesCS7D01G430400 chr7A 80.885 1967 293 49 289 2191 635270704 635272651 0.000000e+00 1472.0
14 TraesCS7D01G430400 chr7A 82.030 1675 238 41 244 1878 635051469 635053120 0.000000e+00 1367.0
15 TraesCS7D01G430400 chr7A 85.845 657 65 14 1980 2615 635096263 635096912 0.000000e+00 673.0
16 TraesCS7D01G430400 chr7A 84.909 656 83 7 1125 1773 635238790 635239436 0.000000e+00 649.0
17 TraesCS7D01G430400 chr7A 77.401 177 27 7 107 275 635270490 635270661 2.770000e-15 93.5
18 TraesCS7D01G430400 chrUn 87.037 108 14 0 1771 1878 1915295 1915402 3.540000e-24 122.0
19 TraesCS7D01G430400 chr3A 86.486 111 15 0 1771 1881 590310772 590310662 3.540000e-24 122.0
20 TraesCS7D01G430400 chr3A 86.111 108 15 0 1771 1878 722933126 722933233 1.650000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G430400 chr7D 549705159 549707776 2617 False 4835.00 4835 100.0000 1 2618 1 chr7D.!!$F2 2617
1 TraesCS7D01G430400 chr7D 549697256 549699034 1778 False 1703.00 1703 84.3040 160 1922 1 chr7D.!!$F1 1762
2 TraesCS7D01G430400 chr7D 549783140 549784919 1779 False 1604.00 1604 83.2680 117 1878 1 chr7D.!!$F4 1761
3 TraesCS7D01G430400 chr7D 549770400 549772187 1787 False 851.00 1580 85.5640 124 1878 2 chr7D.!!$F5 1754
4 TraesCS7D01G430400 chr7D 549743562 549744162 600 False 462.00 462 81.1880 180 762 1 chr7D.!!$F3 582
5 TraesCS7D01G430400 chr7B 594044067 594050734 6667 False 1831.50 3332 86.3545 1 2618 2 chr7B.!!$F3 2617
6 TraesCS7D01G430400 chr7B 594063484 594065137 1653 False 1522.00 1522 83.4730 124 1773 1 chr7B.!!$F2 1649
7 TraesCS7D01G430400 chr7A 635074709 635076496 1787 False 1796.00 1796 85.1280 159 1922 1 chr7A.!!$F2 1763
8 TraesCS7D01G430400 chr7A 635093958 635096912 2954 False 1682.00 2691 89.1305 94 2615 2 chr7A.!!$F3 2521
9 TraesCS7D01G430400 chr7A 635051469 635053120 1651 False 1367.00 1367 82.0300 244 1878 1 chr7A.!!$F1 1634
10 TraesCS7D01G430400 chr7A 635238790 635242857 4067 False 1072.00 1495 83.8250 184 1878 2 chr7A.!!$F4 1694
11 TraesCS7D01G430400 chr7A 635270490 635272651 2161 False 782.75 1472 79.1430 107 2191 2 chr7A.!!$F5 2084

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 4813 0.687354 ACAATGTTGTCGGAGCCTCT 59.313 50.0 0.0 0.0 36.5 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2542 7213 0.394938 TTGCGGTGTAGAGGCAAGAA 59.605 50.0 0.0 0.0 41.34 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 4101 2.293170 GTCTGCCTCTCCTTTTATGGC 58.707 52.381 0.00 0.00 43.49 4.40
81 4111 6.759827 CCTCTCCTTTTATGGCAATTGATTTG 59.240 38.462 10.34 0.00 38.43 2.32
82 4112 7.243604 TCTCCTTTTATGGCAATTGATTTGT 57.756 32.000 10.34 0.00 37.65 2.83
144 4174 4.651994 CATCACGTAATGAGAAAACTGCC 58.348 43.478 0.00 0.00 41.91 4.85
190 4229 7.482169 TCTGCTTATTATGTAGGATTCGGAT 57.518 36.000 0.00 0.00 0.00 4.18
207 4247 3.567585 TCGGATGACAATTGCAAAACTCA 59.432 39.130 1.71 4.45 0.00 3.41
296 4374 1.208052 AGTACTCTGCCGTAGACCGTA 59.792 52.381 0.00 0.00 33.66 4.02
327 4409 8.676397 ATATGGGATCACATTATCTCTCTGAA 57.324 34.615 17.29 0.00 32.39 3.02
396 4478 5.045286 GGGTATGGATAAGCTCAATCATCCT 60.045 44.000 10.30 2.09 38.23 3.24
398 4480 6.944862 GGTATGGATAAGCTCAATCATCCTTT 59.055 38.462 10.30 3.47 38.23 3.11
439 4532 1.222115 GATGGAATACCGTCGGCAGC 61.222 60.000 12.28 0.00 41.53 5.25
708 4813 0.687354 ACAATGTTGTCGGAGCCTCT 59.313 50.000 0.00 0.00 36.50 3.69
869 4974 2.651455 ACCTCGAGTTCCATCGTCATA 58.349 47.619 12.31 0.00 43.20 2.15
932 5037 3.073411 TCATCCATCTGGGGAATACCA 57.927 47.619 0.00 0.00 41.12 3.25
1013 5118 0.387202 CCGAGAATGATCAGACGGCT 59.613 55.000 15.64 0.00 34.37 5.52
1025 5130 2.449548 GACGGCTGTCAGTGTCATG 58.550 57.895 21.02 0.00 44.82 3.07
1032 5137 2.412870 CTGTCAGTGTCATGGCGTTTA 58.587 47.619 0.00 0.00 0.00 2.01
1206 5311 2.081787 TCCTGACCAGTTGGGCCAA 61.082 57.895 16.66 16.66 44.80 4.52
1230 5335 4.504858 GGTTGTCGTTGTTAGAGATGGAT 58.495 43.478 0.00 0.00 0.00 3.41
1232 5337 4.123497 TGTCGTTGTTAGAGATGGATGG 57.877 45.455 0.00 0.00 0.00 3.51
1294 5399 6.100279 AGAGATTTGGGTGATGCAAGACTATA 59.900 38.462 0.00 0.00 0.00 1.31
1362 5467 4.744570 TGAAGACATCACCACTATTCGAC 58.255 43.478 0.00 0.00 31.50 4.20
1429 5546 3.560105 TGTTGTCACAATCCATTGGACA 58.440 40.909 7.76 14.56 41.60 4.02
1557 5674 3.389329 AGAGCATGATTCCACTTCCGTAT 59.611 43.478 0.00 0.00 0.00 3.06
1558 5675 3.470709 AGCATGATTCCACTTCCGTATG 58.529 45.455 0.00 0.00 0.00 2.39
1564 5681 1.191535 TCCACTTCCGTATGGTGAGG 58.808 55.000 0.00 4.19 37.27 3.86
1568 5685 0.249120 CTTCCGTATGGTGAGGTGCA 59.751 55.000 0.00 0.00 36.30 4.57
1569 5686 0.687920 TTCCGTATGGTGAGGTGCAA 59.312 50.000 0.00 0.00 36.30 4.08
1570 5687 0.249120 TCCGTATGGTGAGGTGCAAG 59.751 55.000 0.00 0.00 36.30 4.01
1588 5708 3.305608 GCAAGAAGAAGGTGGTTTGGATG 60.306 47.826 0.00 0.00 0.00 3.51
1624 5744 5.887754 TCTTCATAGGGCTTTAAAGTGGTT 58.112 37.500 16.38 3.55 0.00 3.67
1625 5745 6.311735 TCTTCATAGGGCTTTAAAGTGGTTT 58.688 36.000 16.38 1.97 0.00 3.27
1626 5746 5.975693 TCATAGGGCTTTAAAGTGGTTTG 57.024 39.130 16.38 9.42 0.00 2.93
1628 5748 6.544650 TCATAGGGCTTTAAAGTGGTTTGTA 58.455 36.000 16.38 0.80 0.00 2.41
1688 5814 6.006449 GTCCATCCTTTATGAGCATATGGTT 58.994 40.000 9.14 0.00 37.86 3.67
1698 5824 8.893219 TTATGAGCATATGGTTCTAGTTCTTG 57.107 34.615 9.14 0.00 0.00 3.02
1710 5839 9.609346 TGGTTCTAGTTCTTGCTTTATAATACC 57.391 33.333 0.00 0.00 0.00 2.73
1865 6030 1.901159 AATGGCACTGGCTGCAATTTA 59.099 42.857 0.50 0.00 46.04 1.40
1981 6205 6.827727 AGTGGATACTTTTGTAAGACAGTGT 58.172 36.000 0.00 0.00 38.54 3.55
1998 6632 4.148079 CAGTGTGAGAGATATGCCCTCTA 58.852 47.826 0.00 0.00 40.78 2.43
2030 6669 2.231820 GTCGTGGGACTTTTGGTCG 58.768 57.895 0.00 0.00 45.35 4.79
2033 6672 0.306533 CGTGGGACTTTTGGTCGTTG 59.693 55.000 0.00 0.00 45.35 4.10
2079 6718 7.847096 TGCTCAGGTTAGTAGTTTGATATTCA 58.153 34.615 0.00 0.00 0.00 2.57
2099 6745 4.325972 TCACTGCTCTGTATGCAATTTGA 58.674 39.130 0.00 0.00 40.13 2.69
2115 6762 8.445275 TGCAATTTGAGTTTACTCTGAAGTAA 57.555 30.769 10.92 0.00 44.38 2.24
2132 6779 7.776030 TCTGAAGTAAAATTTCTTGTGGTACCA 59.224 33.333 11.60 11.60 0.00 3.25
2133 6780 8.294954 TGAAGTAAAATTTCTTGTGGTACCAA 57.705 30.769 18.31 0.08 0.00 3.67
2134 6781 8.192110 TGAAGTAAAATTTCTTGTGGTACCAAC 58.808 33.333 18.31 11.66 0.00 3.77
2144 6791 0.034337 TGGTACCAACTTCGTCCTGC 59.966 55.000 13.60 0.00 0.00 4.85
2178 6826 4.336713 GTGGAGATGTTTTCTTATCAGGGC 59.663 45.833 0.00 0.00 33.74 5.19
2185 6833 5.253330 TGTTTTCTTATCAGGGCTACTTGG 58.747 41.667 0.00 0.00 0.00 3.61
2209 6857 3.131396 AGTCGTGCAGTTTGGTTCTTAG 58.869 45.455 0.00 0.00 0.00 2.18
2212 6860 2.602217 CGTGCAGTTTGGTTCTTAGCAC 60.602 50.000 0.00 0.00 45.23 4.40
2242 6890 9.890629 TCTGTTTCTTCAGTATGCTATTGTTAT 57.109 29.630 0.00 0.00 36.85 1.89
2281 6931 4.326826 TCTGGTTCTTATGCTTGAGTTGG 58.673 43.478 0.00 0.00 0.00 3.77
2285 6935 5.774690 TGGTTCTTATGCTTGAGTTGGATTT 59.225 36.000 0.00 0.00 0.00 2.17
2329 6980 3.068732 GCTTTGCTCCCTTCTGTTTTCTT 59.931 43.478 0.00 0.00 0.00 2.52
2353 7018 6.061441 TCTGAAAATTTGAACCTGTCAGCTA 58.939 36.000 8.34 0.00 37.61 3.32
2362 7027 8.635765 TTTGAACCTGTCAGCTATAGATTTTT 57.364 30.769 3.21 0.00 37.61 1.94
2396 7061 7.558444 AGTTTTGTGGAGAACATACACCTTTTA 59.442 33.333 0.00 0.00 38.99 1.52
2404 7069 7.039993 GGAGAACATACACCTTTTACCACATTT 60.040 37.037 0.00 0.00 0.00 2.32
2411 7076 5.243730 ACACCTTTTACCACATTTCAGATGG 59.756 40.000 0.00 0.00 39.57 3.51
2421 7086 2.578163 TTTCAGATGGCCGCTCCTCG 62.578 60.000 0.00 0.00 35.26 4.63
2468 7133 2.742774 TGCATTGATGATCGACCTACG 58.257 47.619 0.00 0.00 44.09 3.51
2473 7138 3.626028 TGATGATCGACCTACGTGATG 57.374 47.619 0.00 0.00 43.13 3.07
2498 7163 6.529125 GTGATCAGCAACATTATGACAAAAGG 59.471 38.462 0.00 0.00 0.00 3.11
2531 7197 1.611673 GGTGTGATCCCTGTGAACTGG 60.612 57.143 0.00 0.00 35.06 4.00
2535 7206 2.814336 GTGATCCCTGTGAACTGGTTTC 59.186 50.000 5.74 3.24 33.63 2.78
2542 7213 4.832823 CCCTGTGAACTGGTTTCCTTAAAT 59.167 41.667 5.74 0.00 32.58 1.40
2552 7223 5.393866 TGGTTTCCTTAAATTCTTGCCTCT 58.606 37.500 0.00 0.00 0.00 3.69
2553 7224 6.548321 TGGTTTCCTTAAATTCTTGCCTCTA 58.452 36.000 0.00 0.00 0.00 2.43
2554 7225 6.433093 TGGTTTCCTTAAATTCTTGCCTCTAC 59.567 38.462 0.00 0.00 0.00 2.59
2557 7228 5.497474 TCCTTAAATTCTTGCCTCTACACC 58.503 41.667 0.00 0.00 0.00 4.16
2563 7234 1.009829 CTTGCCTCTACACCGCAATC 58.990 55.000 0.00 0.00 41.37 2.67
2566 7237 0.940126 GCCTCTACACCGCAATCATG 59.060 55.000 0.00 0.00 0.00 3.07
2570 7241 3.261580 CTCTACACCGCAATCATGTTGA 58.738 45.455 10.87 0.00 0.00 3.18
2574 7245 0.796312 ACCGCAATCATGTTGACGTC 59.204 50.000 9.11 9.11 0.00 4.34
2575 7246 0.096976 CCGCAATCATGTTGACGTCC 59.903 55.000 14.12 0.00 0.00 4.79
2586 7257 2.940410 TGTTGACGTCCTTCAGGTTTTC 59.060 45.455 14.12 0.00 36.34 2.29
2587 7258 1.860676 TGACGTCCTTCAGGTTTTCG 58.139 50.000 14.12 0.00 36.34 3.46
2588 7259 1.137479 TGACGTCCTTCAGGTTTTCGT 59.863 47.619 14.12 1.08 36.34 3.85
2589 7260 2.361757 TGACGTCCTTCAGGTTTTCGTA 59.638 45.455 14.12 0.00 36.34 3.43
2592 7263 5.105635 TGACGTCCTTCAGGTTTTCGTATAT 60.106 40.000 14.12 0.00 36.34 0.86
2595 7266 8.169977 ACGTCCTTCAGGTTTTCGTATATATA 57.830 34.615 0.00 0.00 36.34 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 4086 6.475596 AATCAATTGCCATAAAAGGAGAGG 57.524 37.500 0.00 0.00 0.00 3.69
71 4101 8.468720 TCATATGCTTGTTGACAAATCAATTG 57.531 30.769 0.00 0.00 46.43 2.32
81 4111 9.013490 GTTCATATGTTTCATATGCTTGTTGAC 57.987 33.333 19.00 9.04 33.29 3.18
82 4112 8.959548 AGTTCATATGTTTCATATGCTTGTTGA 58.040 29.630 19.00 4.64 33.29 3.18
144 4174 5.410746 AGAAAATCATGTAGCAGATATGCCG 59.589 40.000 9.09 0.00 34.90 5.69
190 4229 4.389890 AGCTTGAGTTTTGCAATTGTCA 57.610 36.364 7.40 0.11 0.00 3.58
323 4405 4.081972 ACAGTAGTATCTGGCACACTTCAG 60.082 45.833 0.00 0.00 39.48 3.02
327 4409 4.081972 CAGAACAGTAGTATCTGGCACACT 60.082 45.833 5.13 0.00 39.48 3.55
416 4509 1.868519 GCCGACGGTATTCCATCAGAC 60.869 57.143 16.73 0.00 0.00 3.51
439 4532 4.726416 CTTCTTTTCGTCATGGTGATTGG 58.274 43.478 0.00 0.00 0.00 3.16
695 4800 1.266178 TTGATCAGAGGCTCCGACAA 58.734 50.000 11.71 10.59 0.00 3.18
708 4813 4.151121 TGATTGGCCAGAGTTTTTGATCA 58.849 39.130 5.11 6.18 0.00 2.92
912 5017 3.073411 TGGTATTCCCCAGATGGATGA 57.927 47.619 0.00 0.00 37.39 2.92
932 5037 1.548357 ATGCGAGAACCAGAGCACCT 61.548 55.000 0.00 0.00 42.73 4.00
1013 5118 2.139917 GTAAACGCCATGACACTGACA 58.860 47.619 0.00 0.00 0.00 3.58
1025 5130 3.850740 GCGCCTATATTTTGGTAAACGCC 60.851 47.826 0.00 0.00 36.87 5.68
1032 5137 2.218603 CCTTCGCGCCTATATTTTGGT 58.781 47.619 0.00 0.00 0.00 3.67
1221 5326 2.054232 CAAGCTTGCCATCCATCTCT 57.946 50.000 14.65 0.00 0.00 3.10
1254 5359 6.718454 CCCAAATCTCTATGTAGGCATCATTT 59.282 38.462 0.30 0.00 36.58 2.32
1264 5369 5.628797 TGCATCACCCAAATCTCTATGTA 57.371 39.130 0.00 0.00 0.00 2.29
1265 5370 4.508551 TGCATCACCCAAATCTCTATGT 57.491 40.909 0.00 0.00 0.00 2.29
1355 5460 9.856488 GTGCCATCTTAGAAATATAGTCGAATA 57.144 33.333 0.00 0.00 0.00 1.75
1362 5467 7.976135 AAGCAGTGCCATCTTAGAAATATAG 57.024 36.000 12.58 0.00 0.00 1.31
1429 5546 4.040952 ACAGTGCAAAAGATAGTCAGGACT 59.959 41.667 7.18 7.18 45.02 3.85
1557 5674 1.202806 CCTTCTTCTTGCACCTCACCA 60.203 52.381 0.00 0.00 0.00 4.17
1558 5675 1.202818 ACCTTCTTCTTGCACCTCACC 60.203 52.381 0.00 0.00 0.00 4.02
1564 5681 2.223805 CCAAACCACCTTCTTCTTGCAC 60.224 50.000 0.00 0.00 0.00 4.57
1568 5685 4.401925 CTCATCCAAACCACCTTCTTCTT 58.598 43.478 0.00 0.00 0.00 2.52
1569 5686 3.245052 CCTCATCCAAACCACCTTCTTCT 60.245 47.826 0.00 0.00 0.00 2.85
1570 5687 3.084786 CCTCATCCAAACCACCTTCTTC 58.915 50.000 0.00 0.00 0.00 2.87
1588 5708 4.504689 CCCTATGAAGAATGAAGGCTCCTC 60.505 50.000 0.00 0.00 0.00 3.71
1624 5744 7.663905 ACATGGCAAACTAGAAGTACAATACAA 59.336 33.333 0.00 0.00 0.00 2.41
1625 5745 7.165485 ACATGGCAAACTAGAAGTACAATACA 58.835 34.615 0.00 0.00 0.00 2.29
1626 5746 7.611213 ACATGGCAAACTAGAAGTACAATAC 57.389 36.000 0.00 0.00 0.00 1.89
1628 5748 7.201732 GCATACATGGCAAACTAGAAGTACAAT 60.202 37.037 0.00 0.00 0.00 2.71
1698 5824 9.595823 TGTTCAGTTCTACTGGTATTATAAAGC 57.404 33.333 6.96 0.00 45.94 3.51
1981 6205 3.903530 TGGTAGAGGGCATATCTCTCA 57.096 47.619 0.00 0.00 41.37 3.27
1998 6632 2.764572 CCCACGACTAACTCCTATTGGT 59.235 50.000 0.00 0.00 34.23 3.67
2030 6669 6.590234 AAGATCCAAACTAACCATTCCAAC 57.410 37.500 0.00 0.00 0.00 3.77
2033 6672 5.185828 AGCAAAGATCCAAACTAACCATTCC 59.814 40.000 0.00 0.00 0.00 3.01
2079 6718 4.330250 ACTCAAATTGCATACAGAGCAGT 58.670 39.130 6.65 0.00 43.75 4.40
2115 6762 5.358725 ACGAAGTTGGTACCACAAGAAATTT 59.641 36.000 16.04 1.34 37.78 1.82
2134 6781 2.032549 CACAACAAAGAGCAGGACGAAG 60.033 50.000 0.00 0.00 0.00 3.79
2144 6791 5.505173 AAACATCTCCACACAACAAAGAG 57.495 39.130 0.00 0.00 0.00 2.85
2185 6833 1.529865 GAACCAAACTGCACGACTACC 59.470 52.381 0.00 0.00 0.00 3.18
2209 6857 5.683859 CATACTGAAGAAACAGAACTGTGC 58.316 41.667 8.25 4.44 44.13 4.57
2212 6860 7.840342 ATAGCATACTGAAGAAACAGAACTG 57.160 36.000 0.00 0.00 40.63 3.16
2249 6897 4.811557 GCATAAGAACCAGATCACTGTACC 59.188 45.833 0.00 0.00 42.05 3.34
2250 6898 5.665459 AGCATAAGAACCAGATCACTGTAC 58.335 41.667 0.00 0.00 42.05 2.90
2251 6899 5.939764 AGCATAAGAACCAGATCACTGTA 57.060 39.130 0.00 0.00 42.05 2.74
2252 6900 4.833478 AGCATAAGAACCAGATCACTGT 57.167 40.909 0.00 0.00 42.05 3.55
2253 6901 5.181009 TCAAGCATAAGAACCAGATCACTG 58.819 41.667 0.00 0.00 43.12 3.66
2255 6903 5.181748 ACTCAAGCATAAGAACCAGATCAC 58.818 41.667 0.00 0.00 0.00 3.06
2256 6904 5.426689 ACTCAAGCATAAGAACCAGATCA 57.573 39.130 0.00 0.00 0.00 2.92
2281 6931 6.595716 TCTGCTACTAAGAAAGAAGCCAAATC 59.404 38.462 0.00 0.00 32.14 2.17
2285 6935 4.621747 GCTCTGCTACTAAGAAAGAAGCCA 60.622 45.833 0.00 0.00 32.14 4.75
2329 6980 4.889409 AGCTGACAGGTTCAAATTTTCAGA 59.111 37.500 14.90 0.00 32.21 3.27
2362 7027 7.581213 ATGTTCTCCACAAAACTGTGATTTA 57.419 32.000 6.83 0.00 42.02 1.40
2384 7049 7.447374 TCTGAAATGTGGTAAAAGGTGTATG 57.553 36.000 0.00 0.00 0.00 2.39
2396 7061 1.315257 GCGGCCATCTGAAATGTGGT 61.315 55.000 2.24 0.00 35.44 4.16
2404 7069 3.531207 CGAGGAGCGGCCATCTGA 61.531 66.667 2.24 0.00 40.02 3.27
2421 7086 5.446473 CGGCACTTCATACAAGAAATGAGAC 60.446 44.000 0.00 0.00 34.93 3.36
2451 7116 4.038042 ACATCACGTAGGTCGATCATCAAT 59.962 41.667 0.00 0.00 42.86 2.57
2454 7119 3.003378 TCACATCACGTAGGTCGATCATC 59.997 47.826 0.00 0.00 42.86 2.92
2468 7133 6.183360 TGTCATAATGTTGCTGATCACATCAC 60.183 38.462 0.00 0.00 35.06 3.06
2473 7138 6.529125 CCTTTTGTCATAATGTTGCTGATCAC 59.471 38.462 0.00 0.00 0.00 3.06
2498 7163 3.629398 GGATCACACCAATGAGACAATCC 59.371 47.826 0.00 0.00 30.46 3.01
2531 7197 7.306213 GTGTAGAGGCAAGAATTTAAGGAAAC 58.694 38.462 0.00 0.00 0.00 2.78
2535 7206 4.332819 CGGTGTAGAGGCAAGAATTTAAGG 59.667 45.833 0.00 0.00 0.00 2.69
2542 7213 0.394938 TTGCGGTGTAGAGGCAAGAA 59.605 50.000 0.00 0.00 41.34 2.52
2552 7223 1.729517 CGTCAACATGATTGCGGTGTA 59.270 47.619 0.00 0.00 0.00 2.90
2553 7224 0.516877 CGTCAACATGATTGCGGTGT 59.483 50.000 0.00 0.00 0.00 4.16
2554 7225 0.516877 ACGTCAACATGATTGCGGTG 59.483 50.000 0.00 0.00 0.00 4.94
2557 7228 1.078709 AGGACGTCAACATGATTGCG 58.921 50.000 18.91 10.52 0.00 4.85
2563 7234 2.169832 ACCTGAAGGACGTCAACATG 57.830 50.000 18.91 12.47 38.94 3.21
2566 7237 2.033151 CGAAAACCTGAAGGACGTCAAC 60.033 50.000 18.91 8.31 38.94 3.18
2570 7241 3.672767 ATACGAAAACCTGAAGGACGT 57.327 42.857 2.62 11.00 38.94 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.