Multiple sequence alignment - TraesCS7D01G430300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G430300 chr7D 100.000 2432 0 0 1 2432 549697280 549699711 0.000000e+00 4492.0
1 TraesCS7D01G430300 chr7D 85.014 1735 223 18 5 1711 549770462 549772187 0.000000e+00 1729.0
2 TraesCS7D01G430300 chr7D 84.273 1774 217 37 5 1755 549705346 549707080 0.000000e+00 1674.0
3 TraesCS7D01G430300 chr7D 82.951 1742 229 31 5 1711 549783211 549784919 0.000000e+00 1509.0
4 TraesCS7D01G430300 chr7D 86.585 328 32 8 1896 2222 549763174 549763490 3.850000e-93 351.0
5 TraesCS7D01G430300 chr7D 86.022 93 9 4 2318 2408 549772688 549772778 1.990000e-16 97.1
6 TraesCS7D01G430300 chr7A 96.567 1835 54 3 3 1829 635074736 635076569 0.000000e+00 3031.0
7 TraesCS7D01G430300 chr7A 84.544 1734 232 18 5 1711 635241133 635242857 0.000000e+00 1685.0
8 TraesCS7D01G430300 chr7A 83.686 1796 220 39 5 1774 635094052 635095800 0.000000e+00 1626.0
9 TraesCS7D01G430300 chr7A 83.968 1628 210 28 115 1711 635270704 635272311 0.000000e+00 1513.0
10 TraesCS7D01G430300 chr7A 83.402 1687 216 37 62 1711 635051461 635053120 0.000000e+00 1506.0
11 TraesCS7D01G430300 chr7A 95.389 347 12 2 1808 2154 635078134 635078476 1.270000e-152 549.0
12 TraesCS7D01G430300 chr7A 82.781 302 42 6 1851 2150 635096268 635096561 6.670000e-66 261.0
13 TraesCS7D01G430300 chr7A 99.275 138 1 0 2295 2432 635078588 635078725 1.440000e-62 250.0
14 TraesCS7D01G430300 chr7B 82.749 2110 267 46 69 2150 594048337 594050377 0.000000e+00 1790.0
15 TraesCS7D01G430300 chr7B 95.463 1080 40 3 85 1155 594035397 594036476 0.000000e+00 1714.0
16 TraesCS7D01G430300 chr7B 84.353 1732 238 16 5 1711 594063546 594065269 0.000000e+00 1666.0
17 TraesCS7D01G430300 chr7B 95.146 618 28 1 1630 2247 594043924 594044539 0.000000e+00 974.0
18 TraesCS7D01G430300 chr7B 81.826 1194 155 32 345 1510 594024925 594026084 0.000000e+00 946.0
19 TraesCS7D01G430300 chr7B 83.588 524 58 11 1711 2222 594056719 594057226 1.320000e-127 466.0
20 TraesCS7D01G430300 chr7B 94.928 138 7 0 2295 2432 594044775 594044912 1.460000e-52 217.0
21 TraesCS7D01G430300 chr7B 96.341 82 3 0 4 85 594035231 594035312 4.220000e-28 135.0
22 TraesCS7D01G430300 chr7B 93.939 66 3 1 2234 2299 594044555 594044619 5.530000e-17 99.0
23 TraesCS7D01G430300 chr7B 84.694 98 11 3 2313 2408 594065769 594065864 7.160000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G430300 chr7D 549697280 549699711 2431 False 4492.000000 4492 100.0000 1 2432 1 chr7D.!!$F1 2431
1 TraesCS7D01G430300 chr7D 549705346 549707080 1734 False 1674.000000 1674 84.2730 5 1755 1 chr7D.!!$F2 1750
2 TraesCS7D01G430300 chr7D 549783211 549784919 1708 False 1509.000000 1509 82.9510 5 1711 1 chr7D.!!$F4 1706
3 TraesCS7D01G430300 chr7D 549770462 549772778 2316 False 913.050000 1729 85.5180 5 2408 2 chr7D.!!$F5 2403
4 TraesCS7D01G430300 chr7A 635241133 635242857 1724 False 1685.000000 1685 84.5440 5 1711 1 chr7A.!!$F2 1706
5 TraesCS7D01G430300 chr7A 635270704 635272311 1607 False 1513.000000 1513 83.9680 115 1711 1 chr7A.!!$F3 1596
6 TraesCS7D01G430300 chr7A 635051461 635053120 1659 False 1506.000000 1506 83.4020 62 1711 1 chr7A.!!$F1 1649
7 TraesCS7D01G430300 chr7A 635074736 635078725 3989 False 1276.666667 3031 97.0770 3 2432 3 chr7A.!!$F4 2429
8 TraesCS7D01G430300 chr7A 635094052 635096561 2509 False 943.500000 1626 83.2335 5 2150 2 chr7A.!!$F5 2145
9 TraesCS7D01G430300 chr7B 594024925 594026084 1159 False 946.000000 946 81.8260 345 1510 1 chr7B.!!$F1 1165
10 TraesCS7D01G430300 chr7B 594035231 594036476 1245 False 924.500000 1714 95.9020 4 1155 2 chr7B.!!$F3 1151
11 TraesCS7D01G430300 chr7B 594063546 594065864 2318 False 880.650000 1666 84.5235 5 2408 2 chr7B.!!$F5 2403
12 TraesCS7D01G430300 chr7B 594043924 594050377 6453 False 770.000000 1790 91.6905 69 2432 4 chr7B.!!$F4 2363
13 TraesCS7D01G430300 chr7B 594056719 594057226 507 False 466.000000 466 83.5880 1711 2222 1 chr7B.!!$F2 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 5471 2.485426 CAGTTACTCAGACGTTCCGGTA 59.515 50.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2293 8968 0.106015 AAAGCTGGGCAGTCCAAACT 60.106 50.0 0.0 0.0 46.51 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
202 4644 4.082408 GCCAAGTTGAATTTAGGGGTACAC 60.082 45.833 3.87 0.00 0.00 2.90
203 4645 5.321927 CCAAGTTGAATTTAGGGGTACACT 58.678 41.667 3.87 0.00 0.00 3.55
283 4740 4.095483 AGTCAATCGCCATGATGAAAAGAC 59.905 41.667 0.00 2.26 37.39 3.01
694 5155 3.118665 TCGAGTTCCATCATCATCAGCAA 60.119 43.478 0.00 0.00 0.00 3.91
998 5471 2.485426 CAGTTACTCAGACGTTCCGGTA 59.515 50.000 0.00 0.00 0.00 4.02
1053 5526 2.480419 GTCGTTGTTGGAGATGGACAAG 59.520 50.000 0.00 0.00 34.29 3.16
1241 5732 0.602638 TGTTGTCACACTCCATCGGC 60.603 55.000 0.00 0.00 0.00 5.54
1474 5976 3.254166 GCCATGTATGCCTTTGGAGTATG 59.746 47.826 0.00 0.00 0.00 2.39
1663 6174 5.947663 TCCCCATTTACTTTCACTTCTCAA 58.052 37.500 0.00 0.00 0.00 3.02
1747 6320 1.585267 TTAGTGCAGCGTTGGCATGG 61.585 55.000 0.16 0.00 44.11 3.66
1784 6357 4.922206 TCTAGGAAAACAGTGCCATCAAT 58.078 39.130 0.00 0.00 0.00 2.57
1817 6390 5.645497 AGAGATGCAGTTGTAGTCATTTTCC 59.355 40.000 0.00 0.00 0.00 3.13
1823 6396 6.995686 TGCAGTTGTAGTCATTTTCCTTTAGA 59.004 34.615 0.00 0.00 0.00 2.10
1858 8425 0.471971 AGACGGTGGGGGAGATATGG 60.472 60.000 0.00 0.00 0.00 2.74
2059 8640 7.014711 TGTTTTGTTTTATCAGGGATACTTGCA 59.985 33.333 0.00 0.00 44.78 4.08
2154 8829 5.923733 TCTGGTTCCTATTCTTGACTCTC 57.076 43.478 0.00 0.00 0.00 3.20
2160 8835 6.095160 GGTTCCTATTCTTGACTCTCGAGTTA 59.905 42.308 13.13 0.00 42.66 2.24
2174 8849 9.798994 GACTCTCGAGTTAAATTTGGTATCTTA 57.201 33.333 13.13 0.00 42.66 2.10
2189 8864 9.629878 TTTGGTATCTTAACTTTGTCCTGTTTA 57.370 29.630 0.00 0.00 0.00 2.01
2222 8897 8.865590 AATTTGGTATTTTGGTTATATGTCGC 57.134 30.769 0.00 0.00 0.00 5.19
2223 8898 6.380095 TTGGTATTTTGGTTATATGTCGCC 57.620 37.500 0.00 0.00 0.00 5.54
2225 8900 4.083696 GGTATTTTGGTTATATGTCGCCGG 60.084 45.833 0.00 0.00 0.00 6.13
2227 8902 0.107081 TTGGTTATATGTCGCCGGGG 59.893 55.000 13.31 13.31 0.00 5.73
2228 8903 1.049855 TGGTTATATGTCGCCGGGGT 61.050 55.000 19.13 1.42 0.00 4.95
2229 8904 0.601841 GGTTATATGTCGCCGGGGTG 60.602 60.000 19.13 0.00 0.00 4.61
2230 8905 0.601841 GTTATATGTCGCCGGGGTGG 60.602 60.000 19.13 0.00 42.50 4.61
2231 8906 1.760479 TTATATGTCGCCGGGGTGGG 61.760 60.000 19.13 0.00 38.63 4.61
2232 8907 2.950617 TATATGTCGCCGGGGTGGGT 62.951 60.000 19.13 6.10 38.63 4.51
2233 8908 2.950617 ATATGTCGCCGGGGTGGGTA 62.951 60.000 19.13 8.07 38.63 3.69
2234 8909 2.950617 TATGTCGCCGGGGTGGGTAT 62.951 60.000 19.13 9.17 38.63 2.73
2235 8910 3.789290 GTCGCCGGGGTGGGTATT 61.789 66.667 19.13 0.00 38.63 1.89
2247 8922 4.833938 GGGGTGGGTATTTGTTTCTTGTTA 59.166 41.667 0.00 0.00 0.00 2.41
2249 8924 5.047590 GGGTGGGTATTTGTTTCTTGTTAGG 60.048 44.000 0.00 0.00 0.00 2.69
2251 8926 5.537295 GTGGGTATTTGTTTCTTGTTAGGGT 59.463 40.000 0.00 0.00 0.00 4.34
2252 8927 6.716173 GTGGGTATTTGTTTCTTGTTAGGGTA 59.284 38.462 0.00 0.00 0.00 3.69
2253 8928 6.716173 TGGGTATTTGTTTCTTGTTAGGGTAC 59.284 38.462 0.00 0.00 0.00 3.34
2254 8929 6.716173 GGGTATTTGTTTCTTGTTAGGGTACA 59.284 38.462 0.00 0.00 0.00 2.90
2255 8930 7.231115 GGGTATTTGTTTCTTGTTAGGGTACAA 59.769 37.037 0.00 0.00 36.63 2.41
2256 8931 8.631797 GGTATTTGTTTCTTGTTAGGGTACAAA 58.368 33.333 0.00 0.00 37.55 2.83
2259 8934 7.883391 TTGTTTCTTGTTAGGGTACAAATGA 57.117 32.000 0.00 0.00 37.55 2.57
2260 8935 7.504924 TGTTTCTTGTTAGGGTACAAATGAG 57.495 36.000 0.00 0.00 37.55 2.90
2261 8936 7.057894 TGTTTCTTGTTAGGGTACAAATGAGT 58.942 34.615 0.00 0.00 37.55 3.41
2262 8937 7.558444 TGTTTCTTGTTAGGGTACAAATGAGTT 59.442 33.333 0.00 0.00 37.55 3.01
2263 8938 7.504924 TTCTTGTTAGGGTACAAATGAGTTG 57.495 36.000 0.00 0.00 43.43 3.16
2264 8939 6.833041 TCTTGTTAGGGTACAAATGAGTTGA 58.167 36.000 0.00 0.00 39.87 3.18
2266 8941 7.390440 TCTTGTTAGGGTACAAATGAGTTGATG 59.610 37.037 0.00 0.00 39.87 3.07
2267 8942 6.539173 TGTTAGGGTACAAATGAGTTGATGT 58.461 36.000 0.00 0.00 39.87 3.06
2268 8943 7.001674 TGTTAGGGTACAAATGAGTTGATGTT 58.998 34.615 0.00 0.00 39.87 2.71
2269 8944 5.964958 AGGGTACAAATGAGTTGATGTTG 57.035 39.130 0.00 0.00 39.87 3.33
2271 8946 5.473504 AGGGTACAAATGAGTTGATGTTGTC 59.526 40.000 0.00 0.00 39.87 3.18
2272 8947 5.473504 GGGTACAAATGAGTTGATGTTGTCT 59.526 40.000 0.00 0.00 39.87 3.41
2274 8949 7.425606 GGTACAAATGAGTTGATGTTGTCTTT 58.574 34.615 0.00 0.00 39.87 2.52
2275 8950 8.564574 GGTACAAATGAGTTGATGTTGTCTTTA 58.435 33.333 0.00 0.00 39.87 1.85
2276 8951 9.382244 GTACAAATGAGTTGATGTTGTCTTTAC 57.618 33.333 0.00 0.00 39.87 2.01
2277 8952 7.995289 ACAAATGAGTTGATGTTGTCTTTACA 58.005 30.769 0.00 0.00 39.87 2.41
2278 8953 8.131100 ACAAATGAGTTGATGTTGTCTTTACAG 58.869 33.333 0.00 0.00 39.87 2.74
2279 8954 7.807977 AATGAGTTGATGTTGTCTTTACAGT 57.192 32.000 0.00 0.00 36.83 3.55
2281 8956 6.345298 TGAGTTGATGTTGTCTTTACAGTGA 58.655 36.000 0.00 0.00 36.83 3.41
2282 8957 6.479990 TGAGTTGATGTTGTCTTTACAGTGAG 59.520 38.462 0.00 0.00 36.83 3.51
2284 8959 6.823689 AGTTGATGTTGTCTTTACAGTGAGTT 59.176 34.615 0.00 0.00 36.83 3.01
2285 8960 7.985184 AGTTGATGTTGTCTTTACAGTGAGTTA 59.015 33.333 0.00 0.00 36.83 2.24
2286 8961 7.946655 TGATGTTGTCTTTACAGTGAGTTAG 57.053 36.000 0.00 0.00 36.83 2.34
2287 8962 7.497595 TGATGTTGTCTTTACAGTGAGTTAGT 58.502 34.615 0.00 0.00 36.83 2.24
2288 8963 8.635328 TGATGTTGTCTTTACAGTGAGTTAGTA 58.365 33.333 0.00 0.00 36.83 1.82
2289 8964 8.813643 ATGTTGTCTTTACAGTGAGTTAGTAC 57.186 34.615 0.00 0.00 36.83 2.73
2290 8965 8.004087 TGTTGTCTTTACAGTGAGTTAGTACT 57.996 34.615 0.00 0.00 36.83 2.73
2291 8966 8.472413 TGTTGTCTTTACAGTGAGTTAGTACTT 58.528 33.333 0.00 0.00 36.83 2.24
2292 8967 8.966194 GTTGTCTTTACAGTGAGTTAGTACTTC 58.034 37.037 0.00 0.00 36.83 3.01
2293 8968 8.229253 TGTCTTTACAGTGAGTTAGTACTTCA 57.771 34.615 0.00 0.00 33.84 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.547299 TTTACAATTGTCGTCCCGGT 57.453 45.000 15.85 0.00 0.00 5.28
1 2 4.155280 AGAATTTTACAATTGTCGTCCCGG 59.845 41.667 15.85 0.00 32.35 5.73
21 22 5.827797 ACTCAAAAGTGTGAATTGGCTAGAA 59.172 36.000 0.00 0.00 33.32 2.10
150 4589 5.334105 GCATAACAGTATTTGGCATAGGTCG 60.334 44.000 0.00 0.00 0.00 4.79
202 4644 7.804843 AAAGATGGAGATGATTGAGCTTAAG 57.195 36.000 0.00 0.00 0.00 1.85
203 4645 8.585471 AAAAAGATGGAGATGATTGAGCTTAA 57.415 30.769 0.00 0.00 0.00 1.85
258 4707 1.957668 TCATCATGGCGATTGACTGG 58.042 50.000 0.00 0.00 29.21 4.00
483 4941 2.544267 GACAACGAACCTGACTCCTTTG 59.456 50.000 0.00 0.00 0.00 2.77
892 5365 0.661020 CGGTGGTTGACTTGTGAACC 59.339 55.000 13.80 13.80 41.85 3.62
938 5411 0.532573 CACGGCAGTCTCCATGTAGT 59.467 55.000 0.00 0.00 0.00 2.73
998 5471 4.479993 GGCCAGGACTGCGCATCT 62.480 66.667 12.24 6.37 0.00 2.90
1208 5699 2.027469 TGACAACAGATCAGCAGCTCAT 60.027 45.455 0.00 0.00 0.00 2.90
1241 5732 2.213499 GCAACAGATAATCAGGACCCG 58.787 52.381 0.00 0.00 0.00 5.28
1474 5976 3.019564 ACCTTGTGCTCATAAAGGATGC 58.980 45.455 16.40 0.00 42.65 3.91
1557 6067 0.988832 AAAAGGCACCCGATGGTAGA 59.011 50.000 0.00 0.00 45.57 2.59
1663 6174 5.412594 CAGTGCCATTCACACTACTTAACAT 59.587 40.000 0.00 0.00 46.44 2.71
1747 6320 4.342862 TCCTAGAAACCATGCTAGATGC 57.657 45.455 6.66 0.00 36.97 3.91
1784 6357 9.534565 GACTACAACTGCATCTCTCATATTTTA 57.465 33.333 0.00 0.00 0.00 1.52
1823 6396 7.038516 CCCCACCGTCTTATAAAAGTATATCCT 60.039 40.741 0.00 0.00 34.13 3.24
2059 8640 6.320164 TGTTAAGAACCAAACTGCACAACTAT 59.680 34.615 0.00 0.00 0.00 2.12
2160 8835 9.143155 ACAGGACAAAGTTAAGATACCAAATTT 57.857 29.630 0.00 0.00 0.00 1.82
2211 8886 0.601841 CCACCCCGGCGACATATAAC 60.602 60.000 9.30 0.00 0.00 1.89
2219 8894 3.010314 AAATACCCACCCCGGCGA 61.010 61.111 9.30 0.00 0.00 5.54
2220 8895 2.826738 CAAATACCCACCCCGGCG 60.827 66.667 0.00 0.00 0.00 6.46
2222 8897 1.179152 GAAACAAATACCCACCCCGG 58.821 55.000 0.00 0.00 0.00 5.73
2223 8898 2.209690 AGAAACAAATACCCACCCCG 57.790 50.000 0.00 0.00 0.00 5.73
2225 8900 4.948341 AACAAGAAACAAATACCCACCC 57.052 40.909 0.00 0.00 0.00 4.61
2227 8902 5.537295 ACCCTAACAAGAAACAAATACCCAC 59.463 40.000 0.00 0.00 0.00 4.61
2228 8903 5.707495 ACCCTAACAAGAAACAAATACCCA 58.293 37.500 0.00 0.00 0.00 4.51
2229 8904 6.716173 TGTACCCTAACAAGAAACAAATACCC 59.284 38.462 0.00 0.00 0.00 3.69
2230 8905 7.748691 TGTACCCTAACAAGAAACAAATACC 57.251 36.000 0.00 0.00 0.00 2.73
2233 8908 8.919145 TCATTTGTACCCTAACAAGAAACAAAT 58.081 29.630 5.05 5.05 43.24 2.32
2234 8909 8.294954 TCATTTGTACCCTAACAAGAAACAAA 57.705 30.769 0.00 0.00 40.29 2.83
2235 8910 7.558444 ACTCATTTGTACCCTAACAAGAAACAA 59.442 33.333 0.00 0.00 40.29 2.83
2247 8922 5.385198 ACAACATCAACTCATTTGTACCCT 58.615 37.500 0.00 0.00 36.49 4.34
2249 8924 6.560253 AGACAACATCAACTCATTTGTACC 57.440 37.500 0.00 0.00 36.49 3.34
2251 8926 9.114952 TGTAAAGACAACATCAACTCATTTGTA 57.885 29.630 0.00 0.00 32.58 2.41
2252 8927 7.995289 TGTAAAGACAACATCAACTCATTTGT 58.005 30.769 0.00 0.00 32.58 2.83
2253 8928 8.131100 ACTGTAAAGACAACATCAACTCATTTG 58.869 33.333 0.00 0.00 34.35 2.32
2254 8929 8.131100 CACTGTAAAGACAACATCAACTCATTT 58.869 33.333 0.00 0.00 34.35 2.32
2255 8930 7.498900 TCACTGTAAAGACAACATCAACTCATT 59.501 33.333 0.00 0.00 34.35 2.57
2256 8931 6.992123 TCACTGTAAAGACAACATCAACTCAT 59.008 34.615 0.00 0.00 34.35 2.90
2258 8933 6.480320 ACTCACTGTAAAGACAACATCAACTC 59.520 38.462 0.00 0.00 34.35 3.01
2259 8934 6.349300 ACTCACTGTAAAGACAACATCAACT 58.651 36.000 0.00 0.00 34.35 3.16
2260 8935 6.604735 ACTCACTGTAAAGACAACATCAAC 57.395 37.500 0.00 0.00 34.35 3.18
2261 8936 7.985184 ACTAACTCACTGTAAAGACAACATCAA 59.015 33.333 0.00 0.00 34.35 2.57
2262 8937 7.497595 ACTAACTCACTGTAAAGACAACATCA 58.502 34.615 0.00 0.00 34.35 3.07
2263 8938 7.948278 ACTAACTCACTGTAAAGACAACATC 57.052 36.000 0.00 0.00 34.35 3.06
2264 8939 8.639761 AGTACTAACTCACTGTAAAGACAACAT 58.360 33.333 0.00 0.00 34.35 2.71
2266 8941 8.868635 AAGTACTAACTCACTGTAAAGACAAC 57.131 34.615 0.00 0.00 33.75 3.32
2267 8942 8.689061 TGAAGTACTAACTCACTGTAAAGACAA 58.311 33.333 0.00 0.00 33.75 3.18
2268 8943 8.229253 TGAAGTACTAACTCACTGTAAAGACA 57.771 34.615 0.00 0.00 33.75 3.41
2269 8944 8.351461 ACTGAAGTACTAACTCACTGTAAAGAC 58.649 37.037 0.00 0.00 33.75 3.01
2271 8946 9.530633 AAACTGAAGTACTAACTCACTGTAAAG 57.469 33.333 0.00 0.00 33.75 1.85
2272 8947 9.309516 CAAACTGAAGTACTAACTCACTGTAAA 57.690 33.333 0.00 0.00 33.75 2.01
2274 8949 7.286087 TCCAAACTGAAGTACTAACTCACTGTA 59.714 37.037 0.00 0.00 33.75 2.74
2275 8950 6.097839 TCCAAACTGAAGTACTAACTCACTGT 59.902 38.462 0.00 0.00 33.75 3.55
2276 8951 6.421202 GTCCAAACTGAAGTACTAACTCACTG 59.579 42.308 0.00 0.00 33.75 3.66
2277 8952 6.324254 AGTCCAAACTGAAGTACTAACTCACT 59.676 38.462 0.00 0.00 31.73 3.41
2278 8953 6.514063 AGTCCAAACTGAAGTACTAACTCAC 58.486 40.000 0.00 0.00 31.73 3.51
2279 8954 6.726490 AGTCCAAACTGAAGTACTAACTCA 57.274 37.500 0.00 0.00 31.73 3.41
2293 8968 0.106015 AAAGCTGGGCAGTCCAAACT 60.106 50.000 0.00 0.00 46.51 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.