Multiple sequence alignment - TraesCS7D01G429500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G429500 chr7D 100.000 5786 0 0 1 5786 549293436 549299221 0.000000e+00 10685.0
1 TraesCS7D01G429500 chr7D 87.645 1376 148 15 2261 3628 549304162 549302801 0.000000e+00 1580.0
2 TraesCS7D01G429500 chr7D 88.774 971 97 5 919 1879 549306982 549306014 0.000000e+00 1179.0
3 TraesCS7D01G429500 chr7D 81.139 790 78 39 3992 4737 549302371 549301609 8.410000e-158 568.0
4 TraesCS7D01G429500 chr7D 86.040 351 46 1 3636 3983 549302760 549302410 1.970000e-99 374.0
5 TraesCS7D01G429500 chr7D 91.979 187 12 3 1855 2040 94122886 94123070 5.750000e-65 259.0
6 TraesCS7D01G429500 chr7D 92.405 79 6 0 2008 2086 549305976 549305898 4.740000e-21 113.0
7 TraesCS7D01G429500 chr7A 86.973 2656 278 40 2352 4979 634875224 634877839 0.000000e+00 2926.0
8 TraesCS7D01G429500 chr7A 88.120 2441 243 27 2106 4517 634871206 634873628 0.000000e+00 2857.0
9 TraesCS7D01G429500 chr7A 88.562 1224 132 5 2408 3628 634919724 634918506 0.000000e+00 1478.0
10 TraesCS7D01G429500 chr7A 88.925 921 99 2 937 1856 634870167 634871085 0.000000e+00 1133.0
11 TraesCS7D01G429500 chr7A 88.377 955 92 7 919 1856 634922173 634921221 0.000000e+00 1131.0
12 TraesCS7D01G429500 chr7A 86.379 903 119 2 956 1856 634873639 634874539 0.000000e+00 983.0
13 TraesCS7D01G429500 chr7A 81.212 1155 139 39 3635 4737 634918466 634917338 0.000000e+00 859.0
14 TraesCS7D01G429500 chr7A 88.469 503 45 8 5161 5656 634898523 634899019 3.860000e-166 595.0
15 TraesCS7D01G429500 chr7A 92.737 179 12 1 4992 5170 634896854 634897031 2.070000e-64 257.0
16 TraesCS7D01G429500 chr7A 94.286 70 4 0 4854 4923 701301512 701301443 2.200000e-19 108.0
17 TraesCS7D01G429500 chr7A 84.694 98 14 1 4829 4925 522974636 522974733 4.770000e-16 97.1
18 TraesCS7D01G429500 chr7B 87.046 2532 273 32 2106 4608 593402522 593405027 0.000000e+00 2808.0
19 TraesCS7D01G429500 chr7B 87.549 2273 259 18 2352 4608 593286451 593288715 0.000000e+00 2608.0
20 TraesCS7D01G429500 chr7B 79.400 2500 399 72 2180 4604 593636018 593638476 0.000000e+00 1657.0
21 TraesCS7D01G429500 chr7B 87.509 1377 151 14 2261 3628 593413998 593412634 0.000000e+00 1570.0
22 TraesCS7D01G429500 chr7B 88.370 963 103 3 897 1856 593401442 593402398 0.000000e+00 1149.0
23 TraesCS7D01G429500 chr7B 87.951 971 105 4 919 1879 593416576 593415608 0.000000e+00 1134.0
24 TraesCS7D01G429500 chr7B 86.915 833 103 4 1026 1856 593259516 593260344 0.000000e+00 929.0
25 TraesCS7D01G429500 chr7B 84.292 974 127 7 897 1855 593635033 593635995 0.000000e+00 928.0
26 TraesCS7D01G429500 chr7B 81.234 1151 142 42 3635 4737 593412594 593411470 0.000000e+00 861.0
27 TraesCS7D01G429500 chr7B 88.567 656 41 10 148 802 593191925 593192547 0.000000e+00 765.0
28 TraesCS7D01G429500 chr7B 85.277 686 58 19 4981 5656 593405203 593405855 0.000000e+00 667.0
29 TraesCS7D01G429500 chr7B 77.612 536 82 26 5249 5774 593288802 593289309 2.040000e-74 291.0
30 TraesCS7D01G429500 chr7B 85.145 276 33 6 2531 2799 593293453 593293727 5.710000e-70 276.0
31 TraesCS7D01G429500 chr7B 90.000 150 10 2 743 887 593192557 593192706 7.650000e-44 189.0
32 TraesCS7D01G429500 chr7B 97.260 73 2 0 2014 2086 593402397 593402469 2.190000e-24 124.0
33 TraesCS7D01G429500 chr7B 93.671 79 5 0 2008 2086 593415570 593415492 1.020000e-22 119.0
34 TraesCS7D01G429500 chr7B 94.521 73 4 0 2014 2086 593260343 593260415 4.740000e-21 113.0
35 TraesCS7D01G429500 chr7B 92.857 70 5 0 4854 4923 700413931 700413862 1.030000e-17 102.0
36 TraesCS7D01G429500 chr7B 92.188 64 3 2 2025 2086 593260856 593260919 7.990000e-14 89.8
37 TraesCS7D01G429500 chr7B 85.135 74 10 1 483 556 593397151 593397223 2.240000e-09 75.0
38 TraesCS7D01G429500 chr7B 90.909 55 2 3 4943 4995 222310306 222310253 2.890000e-08 71.3
39 TraesCS7D01G429500 chr2D 98.160 163 2 1 1855 2016 27073488 27073326 3.410000e-72 283.0
40 TraesCS7D01G429500 chr2D 96.933 163 4 1 1854 2015 51138809 51138647 7.390000e-69 272.0
41 TraesCS7D01G429500 chr2D 95.238 168 7 1 1853 2019 6103667 6103834 1.240000e-66 265.0
42 TraesCS7D01G429500 chr3D 96.951 164 4 1 1855 2017 548543798 548543961 2.050000e-69 274.0
43 TraesCS7D01G429500 chr3D 96.933 163 4 1 1855 2016 525471113 525470951 7.390000e-69 272.0
44 TraesCS7D01G429500 chr3D 94.366 71 3 1 4853 4923 422515848 422515779 2.200000e-19 108.0
45 TraesCS7D01G429500 chr6D 96.341 164 5 1 1853 2015 204160016 204160179 9.560000e-68 268.0
46 TraesCS7D01G429500 chr6D 91.250 80 7 0 4856 4935 420734882 420734803 6.130000e-20 110.0
47 TraesCS7D01G429500 chr1D 96.341 164 5 1 1853 2015 408146062 408146225 9.560000e-68 268.0
48 TraesCS7D01G429500 chr4D 92.737 179 11 2 1855 2032 65101502 65101679 2.070000e-64 257.0
49 TraesCS7D01G429500 chr2A 72.996 711 161 27 2605 3300 31174304 31174998 2.710000e-53 220.0
50 TraesCS7D01G429500 chr4A 76.000 300 62 8 1418 1714 740494221 740494513 4.670000e-31 147.0
51 TraesCS7D01G429500 chr6A 92.308 78 3 3 4848 4923 82107345 82107421 2.200000e-19 108.0
52 TraesCS7D01G429500 chr6A 93.333 45 3 0 4942 4986 76520462 76520506 3.740000e-07 67.6
53 TraesCS7D01G429500 chr1B 94.366 71 2 1 4853 4923 246770981 246771049 2.200000e-19 108.0
54 TraesCS7D01G429500 chr2B 92.105 76 5 1 4853 4927 602996297 602996372 7.930000e-19 106.0
55 TraesCS7D01G429500 chr2B 92.105 38 3 0 4942 4979 30620481 30620518 3.000000e-03 54.7
56 TraesCS7D01G429500 chr5A 94.118 68 4 0 4856 4923 337822989 337822922 2.850000e-18 104.0
57 TraesCS7D01G429500 chr5A 92.683 41 3 0 4942 4982 335291549 335291589 6.260000e-05 60.2
58 TraesCS7D01G429500 chr5B 91.549 71 6 0 4848 4918 288327648 288327718 1.330000e-16 99.0
59 TraesCS7D01G429500 chr5D 95.122 41 2 0 4942 4982 254521554 254521514 1.350000e-06 65.8
60 TraesCS7D01G429500 chr6B 94.737 38 2 0 4950 4987 233039344 233039381 6.260000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G429500 chr7D 549293436 549299221 5785 False 10685.000000 10685 100.000000 1 5786 1 chr7D.!!$F2 5785
1 TraesCS7D01G429500 chr7D 549301609 549306982 5373 True 762.800000 1580 87.200600 919 4737 5 chr7D.!!$R1 3818
2 TraesCS7D01G429500 chr7A 634870167 634877839 7672 False 1974.750000 2926 87.599250 937 4979 4 chr7A.!!$F2 4042
3 TraesCS7D01G429500 chr7A 634917338 634922173 4835 True 1156.000000 1478 86.050333 919 4737 3 chr7A.!!$R2 3818
4 TraesCS7D01G429500 chr7A 634896854 634899019 2165 False 426.000000 595 90.603000 4992 5656 2 chr7A.!!$F3 664
5 TraesCS7D01G429500 chr7B 593286451 593289309 2858 False 1449.500000 2608 82.580500 2352 5774 2 chr7B.!!$F5 3422
6 TraesCS7D01G429500 chr7B 593635033 593638476 3443 False 1292.500000 1657 81.846000 897 4604 2 chr7B.!!$F7 3707
7 TraesCS7D01G429500 chr7B 593401442 593405855 4413 False 1187.000000 2808 89.488250 897 5656 4 chr7B.!!$F6 4759
8 TraesCS7D01G429500 chr7B 593411470 593416576 5106 True 921.000000 1570 87.591250 919 4737 4 chr7B.!!$R3 3818
9 TraesCS7D01G429500 chr7B 593191925 593192706 781 False 477.000000 765 89.283500 148 887 2 chr7B.!!$F3 739
10 TraesCS7D01G429500 chr7B 593259516 593260919 1403 False 377.266667 929 91.208000 1026 2086 3 chr7B.!!$F4 1060
11 TraesCS7D01G429500 chr2A 31174304 31174998 694 False 220.000000 220 72.996000 2605 3300 1 chr2A.!!$F1 695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.111639 GGACACACCCTAGGCCAAAA 59.888 55.0 5.01 0.00 0.00 2.44 F
800 802 0.525761 CATTGGGCACGGTTAACCTG 59.474 55.0 22.12 18.42 0.00 4.00 F
1657 1680 0.104120 GCAAGGCCTTTGTTTCGGTT 59.896 50.0 17.61 0.00 39.08 4.44 F
2926 5859 0.897621 GCTTATTGGCCAGCAAACCT 59.102 50.0 5.11 0.00 35.95 3.50 F
3629 6580 0.032515 TGGGATCTCGGACCAGCTTA 60.033 55.0 0.00 0.00 0.00 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1060 1062 1.476891 TCCCTCTCGAGAAATTCCACG 59.523 52.381 17.36 1.72 0.00 4.94 R
2518 5437 1.909700 TGGGAAGCATCTCAACCAAC 58.090 50.000 0.00 0.00 31.47 3.77 R
3138 6077 0.405585 CCCTTTTCCTGCTTCCTCCA 59.594 55.000 0.00 0.00 0.00 3.86 R
4124 10887 0.038892 TCCGTAGCCGTCAGTTTCAC 60.039 55.000 0.00 0.00 0.00 3.18 R
4922 11857 0.179048 CTGGGCTGCATACGGATTGA 60.179 55.000 0.50 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.641499 TGTCAATGTTTGTTGGAAAAAGTATC 57.359 30.769 0.00 0.00 0.00 2.24
27 28 8.253810 TGTCAATGTTTGTTGGAAAAAGTATCA 58.746 29.630 0.00 0.00 0.00 2.15
28 29 8.755018 GTCAATGTTTGTTGGAAAAAGTATCAG 58.245 33.333 0.00 0.00 0.00 2.90
29 30 8.474025 TCAATGTTTGTTGGAAAAAGTATCAGT 58.526 29.630 0.00 0.00 0.00 3.41
30 31 9.097257 CAATGTTTGTTGGAAAAAGTATCAGTT 57.903 29.630 0.00 0.00 0.00 3.16
31 32 9.665719 AATGTTTGTTGGAAAAAGTATCAGTTT 57.334 25.926 0.00 0.00 0.00 2.66
52 53 9.498307 CAGTTTATAATGGAATTTACACGTTCC 57.502 33.333 0.00 0.00 43.33 3.62
53 54 9.457436 AGTTTATAATGGAATTTACACGTTCCT 57.543 29.630 3.53 0.00 43.41 3.36
59 60 7.696992 ATGGAATTTACACGTTCCTAAATGT 57.303 32.000 3.53 0.00 43.41 2.71
60 61 8.026607 AATGGAATTTACACGTTCCTAAATGTG 58.973 33.333 8.55 8.55 44.72 3.21
79 80 3.924114 TGGAACACTGAAGAAAGACCA 57.076 42.857 0.00 0.00 0.00 4.02
80 81 3.541632 TGGAACACTGAAGAAAGACCAC 58.458 45.455 0.00 0.00 0.00 4.16
81 82 3.054728 TGGAACACTGAAGAAAGACCACA 60.055 43.478 0.00 0.00 0.00 4.17
82 83 3.312697 GGAACACTGAAGAAAGACCACAC 59.687 47.826 0.00 0.00 0.00 3.82
83 84 3.627395 ACACTGAAGAAAGACCACACA 57.373 42.857 0.00 0.00 0.00 3.72
84 85 3.270877 ACACTGAAGAAAGACCACACAC 58.729 45.455 0.00 0.00 0.00 3.82
85 86 2.285220 CACTGAAGAAAGACCACACACG 59.715 50.000 0.00 0.00 0.00 4.49
86 87 1.867233 CTGAAGAAAGACCACACACGG 59.133 52.381 0.00 0.00 0.00 4.94
87 88 1.483004 TGAAGAAAGACCACACACGGA 59.517 47.619 0.00 0.00 0.00 4.69
88 89 1.865340 GAAGAAAGACCACACACGGAC 59.135 52.381 0.00 0.00 0.00 4.79
89 90 0.828022 AGAAAGACCACACACGGACA 59.172 50.000 0.00 0.00 0.00 4.02
90 91 0.935196 GAAAGACCACACACGGACAC 59.065 55.000 0.00 0.00 0.00 3.67
91 92 0.250793 AAAGACCACACACGGACACA 59.749 50.000 0.00 0.00 0.00 3.72
92 93 0.461339 AAGACCACACACGGACACAC 60.461 55.000 0.00 0.00 0.00 3.82
93 94 1.885850 GACCACACACGGACACACC 60.886 63.158 0.00 0.00 0.00 4.16
94 95 2.590575 CCACACACGGACACACCC 60.591 66.667 0.00 0.00 34.64 4.61
95 96 2.504032 CACACACGGACACACCCT 59.496 61.111 0.00 0.00 34.64 4.34
96 97 1.743391 CACACACGGACACACCCTA 59.257 57.895 0.00 0.00 34.64 3.53
97 98 0.319555 CACACACGGACACACCCTAG 60.320 60.000 0.00 0.00 34.64 3.02
98 99 1.292223 CACACGGACACACCCTAGG 59.708 63.158 0.06 0.06 34.64 3.02
99 100 2.264794 CACGGACACACCCTAGGC 59.735 66.667 2.05 0.00 34.64 3.93
100 101 3.001406 ACGGACACACCCTAGGCC 61.001 66.667 2.05 0.00 34.64 5.19
101 102 3.000819 CGGACACACCCTAGGCCA 61.001 66.667 5.01 0.00 34.64 5.36
102 103 2.589157 CGGACACACCCTAGGCCAA 61.589 63.158 5.01 0.00 34.64 4.52
103 104 1.765074 GGACACACCCTAGGCCAAA 59.235 57.895 5.01 0.00 0.00 3.28
104 105 0.111639 GGACACACCCTAGGCCAAAA 59.888 55.000 5.01 0.00 0.00 2.44
105 106 1.479757 GGACACACCCTAGGCCAAAAA 60.480 52.381 5.01 0.00 0.00 1.94
120 121 2.188912 AAAAATGGATCCCGTGCGG 58.811 52.632 9.90 3.25 0.00 5.69
121 122 1.944234 AAAAATGGATCCCGTGCGGC 61.944 55.000 9.90 0.00 0.00 6.53
138 139 3.767230 CGTGCGGCGTGACTTCAG 61.767 66.667 9.37 0.00 35.54 3.02
139 140 4.077188 GTGCGGCGTGACTTCAGC 62.077 66.667 9.37 0.00 0.00 4.26
143 144 2.665185 GGCGTGACTTCAGCGGTT 60.665 61.111 0.00 0.00 0.00 4.44
144 145 2.668280 GGCGTGACTTCAGCGGTTC 61.668 63.158 0.00 0.00 0.00 3.62
145 146 1.954146 GCGTGACTTCAGCGGTTCA 60.954 57.895 0.00 0.00 0.00 3.18
146 147 1.891060 GCGTGACTTCAGCGGTTCAG 61.891 60.000 0.00 0.00 0.00 3.02
153 154 4.641645 CAGCGGTTCAGCCCACCA 62.642 66.667 0.00 0.00 38.01 4.17
307 308 4.947147 TGCTCCGCCGCCAAGTTT 62.947 61.111 0.00 0.00 0.00 2.66
308 309 4.103103 GCTCCGCCGCCAAGTTTC 62.103 66.667 0.00 0.00 0.00 2.78
309 310 3.431725 CTCCGCCGCCAAGTTTCC 61.432 66.667 0.00 0.00 0.00 3.13
310 311 3.901797 CTCCGCCGCCAAGTTTCCT 62.902 63.158 0.00 0.00 0.00 3.36
311 312 3.431725 CCGCCGCCAAGTTTCCTC 61.432 66.667 0.00 0.00 0.00 3.71
312 313 2.668212 CGCCGCCAAGTTTCCTCA 60.668 61.111 0.00 0.00 0.00 3.86
313 314 2.954611 GCCGCCAAGTTTCCTCAC 59.045 61.111 0.00 0.00 0.00 3.51
314 315 2.626780 GCCGCCAAGTTTCCTCACC 61.627 63.158 0.00 0.00 0.00 4.02
315 316 1.073199 CCGCCAAGTTTCCTCACCT 59.927 57.895 0.00 0.00 0.00 4.00
316 317 0.955919 CCGCCAAGTTTCCTCACCTC 60.956 60.000 0.00 0.00 0.00 3.85
317 318 0.955919 CGCCAAGTTTCCTCACCTCC 60.956 60.000 0.00 0.00 0.00 4.30
318 319 0.955919 GCCAAGTTTCCTCACCTCCG 60.956 60.000 0.00 0.00 0.00 4.63
319 320 0.955919 CCAAGTTTCCTCACCTCCGC 60.956 60.000 0.00 0.00 0.00 5.54
320 321 0.955919 CAAGTTTCCTCACCTCCGCC 60.956 60.000 0.00 0.00 0.00 6.13
321 322 2.434359 GTTTCCTCACCTCCGCCG 60.434 66.667 0.00 0.00 0.00 6.46
322 323 4.388499 TTTCCTCACCTCCGCCGC 62.388 66.667 0.00 0.00 0.00 6.53
420 422 1.068055 CCTGGTCTTTGCATTGTCAGC 60.068 52.381 0.00 0.00 0.00 4.26
423 425 3.689347 TGGTCTTTGCATTGTCAGCTAT 58.311 40.909 0.00 0.00 0.00 2.97
424 426 4.081406 TGGTCTTTGCATTGTCAGCTATT 58.919 39.130 0.00 0.00 0.00 1.73
441 443 3.368236 GCTATTCGCTTTCTTTGTCTCGT 59.632 43.478 0.00 0.00 35.14 4.18
443 445 5.275974 GCTATTCGCTTTCTTTGTCTCGTAG 60.276 44.000 0.00 0.00 35.14 3.51
446 448 2.917971 CGCTTTCTTTGTCTCGTAGGAG 59.082 50.000 6.08 6.08 41.89 3.69
466 468 4.565652 GGAGGTATTCTTGTGACCATGTGT 60.566 45.833 0.00 0.00 35.56 3.72
478 480 4.457603 GTGACCATGTGTGCACCTAATTAA 59.542 41.667 15.69 0.00 0.00 1.40
490 492 3.758554 CACCTAATTAACACAGCCAAGCT 59.241 43.478 0.00 0.00 40.77 3.74
491 493 4.218417 CACCTAATTAACACAGCCAAGCTT 59.782 41.667 0.00 0.00 36.40 3.74
532 534 0.940126 GCTTGGATCTGCGTGGTATG 59.060 55.000 0.00 0.00 0.00 2.39
537 539 0.806102 GATCTGCGTGGTATGCACGT 60.806 55.000 0.00 0.00 46.49 4.49
539 541 1.132436 CTGCGTGGTATGCACGTTG 59.868 57.895 0.00 0.00 46.49 4.10
567 569 1.774639 GCATTTGGCATGGCTAATCG 58.225 50.000 22.54 18.41 43.97 3.34
581 583 0.744281 TAATCGCGCAGATGTCTCCA 59.256 50.000 8.75 0.00 40.02 3.86
594 596 2.202987 CTCCAGGCACATCCGAGC 60.203 66.667 0.00 0.00 40.77 5.03
627 629 0.614812 ACCCATTTGGCCATTTCTGC 59.385 50.000 6.09 0.00 37.83 4.26
676 678 2.565841 GGAAAGATGATTCTCCACGGG 58.434 52.381 0.00 0.00 0.00 5.28
677 679 2.092914 GGAAAGATGATTCTCCACGGGT 60.093 50.000 0.00 0.00 0.00 5.28
681 683 1.207089 GATGATTCTCCACGGGTCACA 59.793 52.381 0.00 0.00 0.00 3.58
682 684 0.608130 TGATTCTCCACGGGTCACAG 59.392 55.000 0.00 0.00 0.00 3.66
683 685 0.741221 GATTCTCCACGGGTCACAGC 60.741 60.000 0.00 0.00 0.00 4.40
684 686 2.507110 ATTCTCCACGGGTCACAGCG 62.507 60.000 0.00 0.00 0.00 5.18
685 687 3.680786 CTCCACGGGTCACAGCGA 61.681 66.667 0.00 0.00 0.00 4.93
686 688 3.633094 CTCCACGGGTCACAGCGAG 62.633 68.421 0.00 0.00 0.00 5.03
703 705 5.464722 ACAGCGAGCAAATATATGAGAACTG 59.535 40.000 0.00 0.00 0.00 3.16
714 716 9.566432 AAATATATGAGAACTGACCAATTCTCC 57.434 33.333 15.73 2.64 46.89 3.71
725 727 7.441836 ACTGACCAATTCTCCAAAAATAAACC 58.558 34.615 0.00 0.00 0.00 3.27
726 728 6.764379 TGACCAATTCTCCAAAAATAAACCC 58.236 36.000 0.00 0.00 0.00 4.11
727 729 6.556874 TGACCAATTCTCCAAAAATAAACCCT 59.443 34.615 0.00 0.00 0.00 4.34
768 770 2.742774 TGGATCTGCGTGATATGAACG 58.257 47.619 3.68 3.68 43.81 3.95
769 771 2.100749 TGGATCTGCGTGATATGAACGT 59.899 45.455 8.78 0.00 42.93 3.99
770 772 3.123804 GGATCTGCGTGATATGAACGTT 58.876 45.455 0.00 0.00 42.93 3.99
771 773 4.202070 TGGATCTGCGTGATATGAACGTTA 60.202 41.667 0.00 0.00 42.93 3.18
772 774 4.383052 GGATCTGCGTGATATGAACGTTAG 59.617 45.833 0.00 7.90 42.93 2.34
773 775 3.702330 TCTGCGTGATATGAACGTTAGG 58.298 45.455 0.00 0.00 42.93 2.69
774 776 2.198406 TGCGTGATATGAACGTTAGGC 58.802 47.619 0.00 2.24 42.93 3.93
775 777 1.525619 GCGTGATATGAACGTTAGGCC 59.474 52.381 0.00 0.00 42.93 5.19
776 778 2.816689 CGTGATATGAACGTTAGGCCA 58.183 47.619 5.01 0.00 36.31 5.36
777 779 3.390135 CGTGATATGAACGTTAGGCCAT 58.610 45.455 5.01 2.87 36.31 4.40
778 780 4.552355 CGTGATATGAACGTTAGGCCATA 58.448 43.478 5.01 5.30 36.31 2.74
779 781 5.168569 CGTGATATGAACGTTAGGCCATAT 58.831 41.667 16.01 16.01 36.31 1.78
780 782 5.062183 CGTGATATGAACGTTAGGCCATATG 59.938 44.000 19.29 0.00 36.31 1.78
781 783 4.935205 TGATATGAACGTTAGGCCATATGC 59.065 41.667 19.29 13.20 33.73 3.14
782 784 2.700722 TGAACGTTAGGCCATATGCA 57.299 45.000 5.01 0.00 43.89 3.96
783 785 3.207265 TGAACGTTAGGCCATATGCAT 57.793 42.857 5.01 3.79 43.89 3.96
784 786 3.550820 TGAACGTTAGGCCATATGCATT 58.449 40.909 3.54 0.00 43.89 3.56
785 787 3.314913 TGAACGTTAGGCCATATGCATTG 59.685 43.478 3.54 3.12 43.89 2.82
786 788 2.229792 ACGTTAGGCCATATGCATTGG 58.770 47.619 18.26 18.26 43.89 3.16
787 789 1.541147 CGTTAGGCCATATGCATTGGG 59.459 52.381 21.74 17.03 43.89 4.12
797 799 4.880899 GCATTGGGCACGGTTAAC 57.119 55.556 0.00 0.00 43.97 2.01
798 800 1.214325 GCATTGGGCACGGTTAACC 59.786 57.895 15.13 15.13 43.97 2.85
799 801 1.248101 GCATTGGGCACGGTTAACCT 61.248 55.000 22.12 6.91 43.97 3.50
800 802 0.525761 CATTGGGCACGGTTAACCTG 59.474 55.000 22.12 18.42 0.00 4.00
801 803 0.610785 ATTGGGCACGGTTAACCTGG 60.611 55.000 22.12 14.43 0.00 4.45
802 804 3.060000 GGGCACGGTTAACCTGGC 61.060 66.667 27.61 27.61 38.24 4.85
803 805 3.428282 GGCACGGTTAACCTGGCG 61.428 66.667 24.31 14.71 34.74 5.69
804 806 2.357760 GCACGGTTAACCTGGCGA 60.358 61.111 22.12 0.00 0.00 5.54
805 807 1.743995 GCACGGTTAACCTGGCGAT 60.744 57.895 22.12 0.00 0.00 4.58
806 808 1.303091 GCACGGTTAACCTGGCGATT 61.303 55.000 22.12 0.00 0.00 3.34
807 809 2.008045 GCACGGTTAACCTGGCGATTA 61.008 52.381 22.12 0.00 0.00 1.75
808 810 1.931172 CACGGTTAACCTGGCGATTAG 59.069 52.381 22.12 6.00 0.00 1.73
809 811 1.551883 ACGGTTAACCTGGCGATTAGT 59.448 47.619 22.12 6.64 0.00 2.24
810 812 2.027837 ACGGTTAACCTGGCGATTAGTT 60.028 45.455 22.12 0.00 0.00 2.24
811 813 3.004862 CGGTTAACCTGGCGATTAGTTT 58.995 45.455 22.12 0.00 0.00 2.66
812 814 3.437741 CGGTTAACCTGGCGATTAGTTTT 59.562 43.478 22.12 0.00 0.00 2.43
813 815 4.670735 CGGTTAACCTGGCGATTAGTTTTG 60.671 45.833 22.12 0.00 0.00 2.44
814 816 4.216902 GGTTAACCTGGCGATTAGTTTTGT 59.783 41.667 17.83 0.00 0.00 2.83
815 817 5.412286 GGTTAACCTGGCGATTAGTTTTGTA 59.588 40.000 17.83 0.00 0.00 2.41
816 818 6.309436 GTTAACCTGGCGATTAGTTTTGTAC 58.691 40.000 0.00 0.00 0.00 2.90
817 819 4.010667 ACCTGGCGATTAGTTTTGTACA 57.989 40.909 0.00 0.00 0.00 2.90
818 820 4.000988 ACCTGGCGATTAGTTTTGTACAG 58.999 43.478 0.00 0.00 0.00 2.74
819 821 4.000988 CCTGGCGATTAGTTTTGTACAGT 58.999 43.478 0.00 0.00 0.00 3.55
820 822 4.092968 CCTGGCGATTAGTTTTGTACAGTC 59.907 45.833 0.00 0.00 0.00 3.51
821 823 4.890088 TGGCGATTAGTTTTGTACAGTCT 58.110 39.130 0.00 0.00 0.00 3.24
822 824 6.028146 TGGCGATTAGTTTTGTACAGTCTA 57.972 37.500 0.00 0.00 0.00 2.59
823 825 6.636705 TGGCGATTAGTTTTGTACAGTCTAT 58.363 36.000 0.00 0.00 0.00 1.98
824 826 7.101054 TGGCGATTAGTTTTGTACAGTCTATT 58.899 34.615 0.00 0.00 0.00 1.73
825 827 7.064134 TGGCGATTAGTTTTGTACAGTCTATTG 59.936 37.037 0.00 0.00 0.00 1.90
826 828 7.399523 GCGATTAGTTTTGTACAGTCTATTGG 58.600 38.462 0.00 1.11 0.00 3.16
827 829 7.399523 CGATTAGTTTTGTACAGTCTATTGGC 58.600 38.462 0.00 0.00 0.00 4.52
828 830 7.277981 CGATTAGTTTTGTACAGTCTATTGGCT 59.722 37.037 0.00 0.00 0.00 4.75
829 831 9.595823 GATTAGTTTTGTACAGTCTATTGGCTA 57.404 33.333 0.00 0.00 0.00 3.93
830 832 8.997621 TTAGTTTTGTACAGTCTATTGGCTAG 57.002 34.615 0.00 0.00 0.00 3.42
831 833 5.875359 AGTTTTGTACAGTCTATTGGCTAGC 59.125 40.000 6.04 6.04 0.00 3.42
832 834 5.677319 TTTGTACAGTCTATTGGCTAGCT 57.323 39.130 15.72 0.00 0.00 3.32
833 835 6.785337 TTTGTACAGTCTATTGGCTAGCTA 57.215 37.500 15.72 5.44 0.00 3.32
834 836 6.392625 TTGTACAGTCTATTGGCTAGCTAG 57.607 41.667 16.84 16.84 0.00 3.42
845 847 2.973419 GCTAGCTAGCCGTAGTACAG 57.027 55.000 31.67 0.59 43.39 2.74
846 848 2.220313 GCTAGCTAGCCGTAGTACAGT 58.780 52.381 31.67 0.00 43.39 3.55
847 849 3.397482 GCTAGCTAGCCGTAGTACAGTA 58.603 50.000 31.67 0.00 43.39 2.74
848 850 3.812053 GCTAGCTAGCCGTAGTACAGTAA 59.188 47.826 31.67 0.00 43.39 2.24
849 851 4.083908 GCTAGCTAGCCGTAGTACAGTAAG 60.084 50.000 31.67 0.00 43.39 2.34
850 852 3.883669 AGCTAGCCGTAGTACAGTAAGT 58.116 45.455 12.13 0.00 0.00 2.24
851 853 5.028549 AGCTAGCCGTAGTACAGTAAGTA 57.971 43.478 12.13 0.00 0.00 2.24
852 854 5.431765 AGCTAGCCGTAGTACAGTAAGTAA 58.568 41.667 12.13 0.00 33.72 2.24
853 855 5.882557 AGCTAGCCGTAGTACAGTAAGTAAA 59.117 40.000 12.13 0.00 33.72 2.01
854 856 6.038050 AGCTAGCCGTAGTACAGTAAGTAAAG 59.962 42.308 12.13 0.00 33.72 1.85
855 857 5.573337 AGCCGTAGTACAGTAAGTAAAGG 57.427 43.478 0.38 0.00 33.72 3.11
856 858 5.012893 AGCCGTAGTACAGTAAGTAAAGGT 58.987 41.667 0.38 0.00 33.72 3.50
857 859 5.098211 GCCGTAGTACAGTAAGTAAAGGTG 58.902 45.833 0.38 0.00 33.72 4.00
858 860 5.644644 CCGTAGTACAGTAAGTAAAGGTGG 58.355 45.833 0.38 0.00 33.72 4.61
859 861 5.098211 CGTAGTACAGTAAGTAAAGGTGGC 58.902 45.833 0.38 0.00 33.72 5.01
860 862 4.548451 AGTACAGTAAGTAAAGGTGGCC 57.452 45.455 0.00 0.00 33.72 5.36
861 863 4.165760 AGTACAGTAAGTAAAGGTGGCCT 58.834 43.478 3.32 0.00 33.72 5.19
862 864 5.336102 AGTACAGTAAGTAAAGGTGGCCTA 58.664 41.667 3.32 0.00 33.72 3.93
863 865 5.781818 AGTACAGTAAGTAAAGGTGGCCTAA 59.218 40.000 3.32 0.00 33.72 2.69
864 866 5.161943 ACAGTAAGTAAAGGTGGCCTAAG 57.838 43.478 3.32 0.00 31.13 2.18
865 867 4.596212 ACAGTAAGTAAAGGTGGCCTAAGT 59.404 41.667 3.32 0.00 31.13 2.24
866 868 5.781818 ACAGTAAGTAAAGGTGGCCTAAGTA 59.218 40.000 3.32 0.00 31.13 2.24
867 869 6.104665 CAGTAAGTAAAGGTGGCCTAAGTAC 58.895 44.000 3.32 0.03 31.13 2.73
868 870 6.021672 AGTAAGTAAAGGTGGCCTAAGTACT 58.978 40.000 3.32 2.58 31.49 2.73
869 871 5.837770 AAGTAAAGGTGGCCTAAGTACTT 57.162 39.130 13.68 13.68 34.19 2.24
870 872 5.837770 AGTAAAGGTGGCCTAAGTACTTT 57.162 39.130 14.49 8.04 31.13 2.66
871 873 6.196918 AGTAAAGGTGGCCTAAGTACTTTT 57.803 37.500 14.49 4.86 31.13 2.27
872 874 6.002082 AGTAAAGGTGGCCTAAGTACTTTTG 58.998 40.000 14.49 6.57 31.13 2.44
873 875 4.717279 AAGGTGGCCTAAGTACTTTTGA 57.283 40.909 14.49 0.00 31.13 2.69
874 876 4.287766 AGGTGGCCTAAGTACTTTTGAG 57.712 45.455 14.49 5.15 28.47 3.02
875 877 3.651423 AGGTGGCCTAAGTACTTTTGAGT 59.349 43.478 14.49 0.00 28.47 3.41
876 878 3.751698 GGTGGCCTAAGTACTTTTGAGTG 59.248 47.826 14.49 1.41 0.00 3.51
877 879 4.386711 GTGGCCTAAGTACTTTTGAGTGT 58.613 43.478 14.49 0.00 0.00 3.55
878 880 5.511888 GGTGGCCTAAGTACTTTTGAGTGTA 60.512 44.000 14.49 0.00 0.00 2.90
879 881 5.407691 GTGGCCTAAGTACTTTTGAGTGTAC 59.592 44.000 14.49 0.67 39.26 2.90
888 890 8.247666 AGTACTTTTGAGTGTACTTAGGAACT 57.752 34.615 0.00 0.00 44.61 3.01
889 891 9.359653 AGTACTTTTGAGTGTACTTAGGAACTA 57.640 33.333 0.00 0.00 44.61 2.24
890 892 9.404348 GTACTTTTGAGTGTACTTAGGAACTAC 57.596 37.037 0.00 0.00 37.00 2.73
891 893 8.015185 ACTTTTGAGTGTACTTAGGAACTACA 57.985 34.615 0.00 0.00 42.67 2.74
892 894 7.924947 ACTTTTGAGTGTACTTAGGAACTACAC 59.075 37.037 3.58 3.58 42.67 2.90
895 897 5.876612 AGTGTACTTAGGAACTACACTCG 57.123 43.478 7.33 0.00 44.73 4.18
907 909 6.881065 AGGAACTACACTCGTACTGTTATACA 59.119 38.462 0.00 0.00 36.02 2.29
910 912 7.439157 ACTACACTCGTACTGTTATACACAA 57.561 36.000 0.00 0.00 33.87 3.33
915 917 8.086522 ACACTCGTACTGTTATACACAAAAGAT 58.913 33.333 0.00 0.00 33.87 2.40
917 919 9.784680 ACTCGTACTGTTATACACAAAAGATAG 57.215 33.333 0.00 0.00 33.87 2.08
942 944 6.317893 GGAACTACACCAACAAGAGAGAAAAA 59.682 38.462 0.00 0.00 0.00 1.94
953 955 3.541632 AGAGAGAAAAACGAAAGCCACA 58.458 40.909 0.00 0.00 0.00 4.17
976 978 1.153086 GAGCCATGGACCTTGCGAT 60.153 57.895 18.40 0.00 0.00 4.58
1060 1062 3.130340 TGCAAAAGGGTGTGAAGAAAGAC 59.870 43.478 0.00 0.00 0.00 3.01
1093 1095 1.619827 GAGAGGGAGATGAGGAGCATG 59.380 57.143 0.00 0.00 37.34 4.06
1138 1140 3.649986 GTGCCGCGTGACAAGCTT 61.650 61.111 11.61 0.00 0.00 3.74
1199 1201 3.366883 GCTGTCATACGAGATGGAGGATC 60.367 52.174 0.00 0.00 0.00 3.36
1201 1203 4.474394 TGTCATACGAGATGGAGGATCTT 58.526 43.478 0.00 0.00 41.91 2.40
1384 1386 2.768492 GGACCGACGTGACCGCTAT 61.768 63.158 0.00 0.00 37.70 2.97
1409 1414 4.705507 AGATTGATGATCTTGCTGCAAGTT 59.294 37.500 33.94 28.24 42.55 2.66
1418 1423 4.647654 CTGCAAGTTTGGCTGCTG 57.352 55.556 0.00 0.00 0.00 4.41
1498 1521 1.137825 CGAGGAGCCAAGAGACGAC 59.862 63.158 0.00 0.00 0.00 4.34
1645 1668 1.268743 GCAGAATTCGTATGCAAGGCC 60.269 52.381 12.01 0.00 39.75 5.19
1657 1680 0.104120 GCAAGGCCTTTGTTTCGGTT 59.896 50.000 17.61 0.00 39.08 4.44
1751 1777 4.086457 TGCTACACTGTTAGATGAGGTGA 58.914 43.478 0.00 0.00 0.00 4.02
1765 1791 3.870274 TGAGGTGATGCTCATTGAGAAG 58.130 45.455 17.87 0.00 0.00 2.85
1769 1795 3.533547 GTGATGCTCATTGAGAAGCTCT 58.466 45.455 17.87 0.00 0.00 4.09
1825 1861 7.379059 TCTCCTAATTTCCATGCTATGAGAA 57.621 36.000 0.00 0.00 0.00 2.87
1827 1863 7.716998 TCTCCTAATTTCCATGCTATGAGAAAC 59.283 37.037 11.22 0.00 34.58 2.78
1838 1874 7.284034 CCATGCTATGAGAAACTTACCTCATTT 59.716 37.037 9.72 0.00 45.01 2.32
1858 1894 9.282247 CTCATTTCAAATGCATGTTTACTACTC 57.718 33.333 5.12 0.00 0.00 2.59
1863 1899 3.906720 TGCATGTTTACTACTCCCTCC 57.093 47.619 0.00 0.00 0.00 4.30
1866 1902 3.369157 GCATGTTTACTACTCCCTCCGTT 60.369 47.826 0.00 0.00 0.00 4.44
1867 1903 4.430908 CATGTTTACTACTCCCTCCGTTC 58.569 47.826 0.00 0.00 0.00 3.95
1868 1904 2.827921 TGTTTACTACTCCCTCCGTTCC 59.172 50.000 0.00 0.00 0.00 3.62
1869 1905 3.095332 GTTTACTACTCCCTCCGTTCCT 58.905 50.000 0.00 0.00 0.00 3.36
1879 1915 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1880 1916 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1881 1917 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1882 1918 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1904 1940 7.492994 GTCTTTGTAGAGATTTCACTATGGACC 59.507 40.741 0.00 0.00 0.00 4.46
1905 1941 6.867519 TTGTAGAGATTTCACTATGGACCA 57.132 37.500 0.00 0.00 0.00 4.02
1906 1942 6.222038 TGTAGAGATTTCACTATGGACCAC 57.778 41.667 0.00 0.00 0.00 4.16
1907 1943 5.719563 TGTAGAGATTTCACTATGGACCACA 59.280 40.000 0.00 0.00 0.00 4.17
1908 1944 5.965033 AGAGATTTCACTATGGACCACAT 57.035 39.130 0.00 0.00 43.68 3.21
1909 1945 7.563556 TGTAGAGATTTCACTATGGACCACATA 59.436 37.037 0.00 0.00 41.03 2.29
1910 1946 6.821388 AGAGATTTCACTATGGACCACATAC 58.179 40.000 0.00 0.00 41.03 2.39
1911 1947 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
1912 1948 3.812156 TTCACTATGGACCACATACGG 57.188 47.619 0.00 0.00 41.03 4.02
1913 1949 3.021177 TCACTATGGACCACATACGGA 57.979 47.619 0.00 0.00 41.03 4.69
1914 1950 3.572642 TCACTATGGACCACATACGGAT 58.427 45.455 0.00 0.00 41.03 4.18
1915 1951 3.320826 TCACTATGGACCACATACGGATG 59.679 47.826 5.94 5.94 41.03 3.51
1917 1953 4.279922 CACTATGGACCACATACGGATGTA 59.720 45.833 14.23 0.00 44.82 2.29
1918 1954 5.047306 CACTATGGACCACATACGGATGTAT 60.047 44.000 14.23 4.48 44.82 2.29
1932 1968 8.932945 ATACGGATGTATGTAGATGCATTTAG 57.067 34.615 0.00 3.18 39.81 1.85
1933 1969 6.993079 ACGGATGTATGTAGATGCATTTAGA 58.007 36.000 0.00 0.00 35.26 2.10
1934 1970 7.441836 ACGGATGTATGTAGATGCATTTAGAA 58.558 34.615 0.00 0.00 35.26 2.10
1935 1971 8.097038 ACGGATGTATGTAGATGCATTTAGAAT 58.903 33.333 0.00 0.00 35.26 2.40
1936 1972 9.586435 CGGATGTATGTAGATGCATTTAGAATA 57.414 33.333 0.00 0.00 35.26 1.75
1947 1983 9.717942 AGATGCATTTAGAATATAGGTTCACTC 57.282 33.333 0.00 0.00 0.00 3.51
1948 1984 9.494271 GATGCATTTAGAATATAGGTTCACTCA 57.506 33.333 0.00 0.00 0.00 3.41
1950 1986 9.851686 TGCATTTAGAATATAGGTTCACTCATT 57.148 29.630 0.00 0.00 0.00 2.57
1958 1994 8.888579 AATATAGGTTCACTCATTTTACTCCG 57.111 34.615 0.00 0.00 0.00 4.63
1959 1995 4.618920 AGGTTCACTCATTTTACTCCGT 57.381 40.909 0.00 0.00 0.00 4.69
1960 1996 5.733620 AGGTTCACTCATTTTACTCCGTA 57.266 39.130 0.00 0.00 0.00 4.02
1961 1997 6.295719 AGGTTCACTCATTTTACTCCGTAT 57.704 37.500 0.00 0.00 0.00 3.06
1962 1998 6.106673 AGGTTCACTCATTTTACTCCGTATG 58.893 40.000 0.00 0.00 0.00 2.39
1963 1999 5.873164 GGTTCACTCATTTTACTCCGTATGT 59.127 40.000 0.00 0.00 0.00 2.29
1964 2000 6.183360 GGTTCACTCATTTTACTCCGTATGTG 60.183 42.308 0.00 0.00 0.00 3.21
1965 2001 5.416083 TCACTCATTTTACTCCGTATGTGG 58.584 41.667 0.00 0.00 0.00 4.17
1966 2002 5.046878 TCACTCATTTTACTCCGTATGTGGT 60.047 40.000 0.00 0.00 0.00 4.16
1967 2003 5.291128 CACTCATTTTACTCCGTATGTGGTC 59.709 44.000 0.00 0.00 0.00 4.02
1968 2004 4.761975 TCATTTTACTCCGTATGTGGTCC 58.238 43.478 0.00 0.00 0.00 4.46
1969 2005 4.223255 TCATTTTACTCCGTATGTGGTCCA 59.777 41.667 0.00 0.00 0.00 4.02
1970 2006 4.829872 TTTTACTCCGTATGTGGTCCAT 57.170 40.909 0.00 0.00 37.58 3.41
1971 2007 5.936187 TTTTACTCCGTATGTGGTCCATA 57.064 39.130 0.00 0.00 34.86 2.74
1972 2008 5.936187 TTTACTCCGTATGTGGTCCATAA 57.064 39.130 0.00 0.00 37.77 1.90
1973 2009 6.488769 TTTACTCCGTATGTGGTCCATAAT 57.511 37.500 0.00 0.00 37.77 1.28
1974 2010 4.336889 ACTCCGTATGTGGTCCATAATG 57.663 45.455 0.00 0.00 37.77 1.90
1975 2011 3.964688 ACTCCGTATGTGGTCCATAATGA 59.035 43.478 0.00 0.00 37.77 2.57
1976 2012 4.407621 ACTCCGTATGTGGTCCATAATGAA 59.592 41.667 0.00 0.00 37.77 2.57
1977 2013 5.104693 ACTCCGTATGTGGTCCATAATGAAA 60.105 40.000 0.00 0.00 37.77 2.69
1978 2014 5.935945 TCCGTATGTGGTCCATAATGAAAT 58.064 37.500 0.00 0.00 37.77 2.17
1979 2015 5.995282 TCCGTATGTGGTCCATAATGAAATC 59.005 40.000 0.00 0.00 37.77 2.17
1980 2016 5.997746 CCGTATGTGGTCCATAATGAAATCT 59.002 40.000 0.00 0.00 37.77 2.40
1981 2017 6.147821 CCGTATGTGGTCCATAATGAAATCTC 59.852 42.308 0.00 0.00 37.77 2.75
1982 2018 6.931281 CGTATGTGGTCCATAATGAAATCTCT 59.069 38.462 0.00 0.00 37.77 3.10
1983 2019 7.116948 CGTATGTGGTCCATAATGAAATCTCTC 59.883 40.741 0.00 0.00 37.77 3.20
1984 2020 5.684704 TGTGGTCCATAATGAAATCTCTCC 58.315 41.667 0.00 0.00 0.00 3.71
1985 2021 5.191522 TGTGGTCCATAATGAAATCTCTCCA 59.808 40.000 0.00 0.00 0.00 3.86
1986 2022 6.122277 GTGGTCCATAATGAAATCTCTCCAA 58.878 40.000 0.00 0.00 0.00 3.53
1987 2023 6.603201 GTGGTCCATAATGAAATCTCTCCAAA 59.397 38.462 0.00 0.00 0.00 3.28
1988 2024 6.830324 TGGTCCATAATGAAATCTCTCCAAAG 59.170 38.462 0.00 0.00 0.00 2.77
1989 2025 7.056635 GGTCCATAATGAAATCTCTCCAAAGA 58.943 38.462 0.00 0.00 0.00 2.52
1990 2026 7.012799 GGTCCATAATGAAATCTCTCCAAAGAC 59.987 40.741 0.00 0.00 0.00 3.01
1991 2027 7.772757 GTCCATAATGAAATCTCTCCAAAGACT 59.227 37.037 0.00 0.00 0.00 3.24
1992 2028 8.331740 TCCATAATGAAATCTCTCCAAAGACTT 58.668 33.333 0.00 0.00 0.00 3.01
1993 2029 9.618890 CCATAATGAAATCTCTCCAAAGACTTA 57.381 33.333 0.00 0.00 0.00 2.24
2005 2041 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
2006 2042 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
2010 2046 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
2152 2285 9.206870 ACACCTAATTTGAAAATGCATGTTTAG 57.793 29.630 2.99 1.23 0.00 1.85
2171 2472 7.605449 TGTTTAGTATAGTGTCCTTTAAGCGT 58.395 34.615 0.00 0.00 0.00 5.07
2201 2503 2.551270 AGAGTGAGGCAGAAATGGGTA 58.449 47.619 0.00 0.00 0.00 3.69
2229 2531 7.092079 TCATTTTCCTGCAGATGTTTTACATG 58.908 34.615 17.39 4.93 39.27 3.21
2277 5110 9.928236 GCATTTTCTTACATGTTTTAAGCAAAA 57.072 25.926 2.30 10.52 29.45 2.44
2389 5277 7.007313 TGTGGAGTTAACTTTACAAAACTCG 57.993 36.000 18.09 0.00 45.61 4.18
2455 5369 8.447924 AGTGTCTTCCATTCATCATTAATCAG 57.552 34.615 0.00 0.00 0.00 2.90
2476 5390 7.526142 TCAGTTACTTATGTCTCAGTTGTCT 57.474 36.000 0.00 0.00 0.00 3.41
2486 5400 4.127171 GTCTCAGTTGTCTTAAAGCACCA 58.873 43.478 0.00 0.00 0.00 4.17
2497 5415 2.995466 AAAGCACCATGTCGTGAATG 57.005 45.000 6.31 0.00 35.68 2.67
2505 5423 5.238432 GCACCATGTCGTGAATGGAATAATA 59.762 40.000 16.90 0.00 46.44 0.98
2534 5453 3.507233 TGGATTGTTGGTTGAGATGCTTC 59.493 43.478 0.00 0.00 0.00 3.86
2543 5462 4.646040 TGGTTGAGATGCTTCCCATATTTG 59.354 41.667 0.00 0.00 33.29 2.32
2579 5512 8.530269 AGGACGACACTTTAGTTTTACTAATG 57.470 34.615 9.59 9.59 40.08 1.90
2580 5513 8.146412 AGGACGACACTTTAGTTTTACTAATGT 58.854 33.333 10.55 10.55 44.67 2.71
2588 5521 9.392259 ACTTTAGTTTTACTAATGTATGGCTCC 57.608 33.333 13.32 0.00 43.12 4.70
2591 5524 3.396260 TTACTAATGTATGGCTCCCGC 57.604 47.619 0.00 0.00 0.00 6.13
2592 5525 1.424638 ACTAATGTATGGCTCCCGCT 58.575 50.000 0.00 0.00 36.09 5.52
2595 5528 1.680338 AATGTATGGCTCCCGCTTTC 58.320 50.000 0.00 0.00 36.09 2.62
2598 5531 1.692749 TATGGCTCCCGCTTTCCCT 60.693 57.895 0.00 0.00 36.09 4.20
2608 5541 2.618045 CCCGCTTTCCCTTGTCAATAGT 60.618 50.000 0.00 0.00 0.00 2.12
2644 5577 8.969260 TCATTGATGATATATGGGATACAAGC 57.031 34.615 0.00 0.00 39.74 4.01
2671 5604 5.964758 TGGGACATAATCAAATGTGCTTTC 58.035 37.500 8.13 0.00 44.81 2.62
2682 5615 6.623486 TCAAATGTGCTTTCATTGATAGTGG 58.377 36.000 6.08 0.00 37.96 4.00
2689 5622 4.498682 GCTTTCATTGATAGTGGATGTGGC 60.499 45.833 6.08 0.00 0.00 5.01
2732 5665 5.746721 ACTCGTATTTTTGAAGTGGCAAAAC 59.253 36.000 0.00 0.00 44.68 2.43
2782 5715 4.385310 CCCCTTTCTCCTGGTAAATCGAAT 60.385 45.833 0.00 0.00 0.00 3.34
2791 5724 7.393234 TCTCCTGGTAAATCGAATGAATTGTTT 59.607 33.333 0.00 0.00 0.00 2.83
2833 5766 5.965922 AGCAAAAGCAATAACCCTTATGAC 58.034 37.500 0.00 0.00 0.00 3.06
2847 5780 7.027874 ACCCTTATGACCAATCAGTTAAGAA 57.972 36.000 0.00 0.00 38.57 2.52
2895 5828 1.272490 TGGCATACCGCTAGCTATCAC 59.728 52.381 13.93 1.09 41.91 3.06
2920 5853 2.550830 TAGCTAGCTTATTGGCCAGC 57.449 50.000 24.88 5.97 44.81 4.85
2926 5859 0.897621 GCTTATTGGCCAGCAAACCT 59.102 50.000 5.11 0.00 35.95 3.50
2932 5865 2.008242 TGGCCAGCAAACCTGTAAAT 57.992 45.000 0.00 0.00 40.06 1.40
2947 5880 3.696045 TGTAAATGATTGGTCTGGGGTG 58.304 45.455 0.00 0.00 0.00 4.61
2953 5886 3.122480 TGATTGGTCTGGGGTGTATGAT 58.878 45.455 0.00 0.00 0.00 2.45
3092 6031 9.160496 GCATATACCCTGAAGATTTTGAGATAG 57.840 37.037 0.00 0.00 0.00 2.08
3130 6069 1.456287 GAAGTGGGTGGCTGAAGGT 59.544 57.895 0.00 0.00 0.00 3.50
3138 6077 1.282157 GGTGGCTGAAGGTTATGTCCT 59.718 52.381 0.00 0.00 39.84 3.85
3139 6078 2.359900 GTGGCTGAAGGTTATGTCCTG 58.640 52.381 0.00 0.00 37.93 3.86
3303 6242 7.776933 TGATTCATTTTCTATCAGAAGACGG 57.223 36.000 0.00 0.00 35.37 4.79
3349 6294 4.710375 AGTAACAGGACATCTCCACGTATT 59.290 41.667 0.00 0.00 39.39 1.89
3374 6319 4.628074 TGCTCGTAGGTTAGCCATAAATC 58.372 43.478 0.00 0.00 37.97 2.17
3416 6364 1.929836 GATCTGTGGCTAACTCAAGCG 59.070 52.381 0.00 0.00 43.74 4.68
3525 6473 4.319839 GGCTTTAGAAGAGTGCACTTTCAC 60.320 45.833 27.97 18.73 37.24 3.18
3629 6580 0.032515 TGGGATCTCGGACCAGCTTA 60.033 55.000 0.00 0.00 0.00 3.09
3784 6771 1.833630 TCTAGCATGGAGGTGTTGGAG 59.166 52.381 0.00 0.00 0.00 3.86
3789 6776 1.073763 CATGGAGGTGTTGGAGTGGAA 59.926 52.381 0.00 0.00 0.00 3.53
3790 6777 1.444933 TGGAGGTGTTGGAGTGGAAT 58.555 50.000 0.00 0.00 0.00 3.01
3823 6810 4.019792 TCTGGAAGAGCTACAATTGCAA 57.980 40.909 5.05 0.00 38.67 4.08
3825 6812 2.819608 TGGAAGAGCTACAATTGCAACC 59.180 45.455 0.00 0.00 0.00 3.77
3828 6815 1.815003 AGAGCTACAATTGCAACCTGC 59.185 47.619 0.00 2.35 45.29 4.85
3860 6847 1.075482 CTGAAAGGGCTGGGCAAGA 59.925 57.895 0.00 0.00 0.00 3.02
3866 6853 1.210204 AGGGCTGGGCAAGATGAAGA 61.210 55.000 0.00 0.00 0.00 2.87
3874 6861 2.015587 GGCAAGATGAAGAAGCTGAGG 58.984 52.381 0.00 0.00 0.00 3.86
3883 6870 3.328931 TGAAGAAGCTGAGGGAGTTGAAT 59.671 43.478 0.00 0.00 0.00 2.57
3893 6883 7.051000 GCTGAGGGAGTTGAATATACTCTTTT 58.949 38.462 4.53 0.00 41.37 2.27
3962 6955 5.460091 GTCAATCTGCAAAAACTTCAAGTCC 59.540 40.000 0.00 0.00 0.00 3.85
3972 6965 8.088365 GCAAAAACTTCAAGTCCTAATGGTTAT 58.912 33.333 0.00 0.00 34.23 1.89
3974 6967 9.981114 AAAAACTTCAAGTCCTAATGGTTATTG 57.019 29.630 0.00 0.00 34.23 1.90
3983 6976 7.060421 AGTCCTAATGGTTATTGGTTGGTATG 58.940 38.462 0.00 0.00 34.23 2.39
3989 7012 4.785914 TGGTTATTGGTTGGTATGGAGAGA 59.214 41.667 0.00 0.00 0.00 3.10
4055 10818 1.276421 ACCTCCGTCATCTGAAACTGG 59.724 52.381 0.00 0.00 0.00 4.00
4056 10819 1.406069 CCTCCGTCATCTGAAACTGGG 60.406 57.143 0.00 0.00 0.00 4.45
4124 10887 2.002586 CGAACCTCTGCCACTTGTATG 58.997 52.381 0.00 0.00 0.00 2.39
4144 10907 0.038892 TGAAACTGACGGCTACGGAC 60.039 55.000 0.00 0.00 46.48 4.79
4215 10978 0.390209 ATTTGTTGCAAGGATGGCGC 60.390 50.000 0.00 0.00 38.51 6.53
4317 11080 0.035820 GTACGGGGAGCAATGTCCAA 60.036 55.000 4.71 0.00 38.52 3.53
4338 11104 4.965119 ACCTTGAGTGTTTTGAGTTCAC 57.035 40.909 0.00 0.00 0.00 3.18
4424 11190 1.660167 TGATGCTCAAATCAGAGGCG 58.340 50.000 0.00 0.00 36.15 5.52
4432 11213 3.861840 TCAAATCAGAGGCGAAACTAGG 58.138 45.455 0.00 0.00 0.00 3.02
4438 11219 0.533085 GAGGCGAAACTAGGATGGGC 60.533 60.000 0.00 0.00 0.00 5.36
4445 11226 0.759346 AACTAGGATGGGCATCGACC 59.241 55.000 0.00 0.00 38.69 4.79
4561 11388 6.486056 AGTCTCTTTCTCATGTACCTGTAGA 58.514 40.000 0.00 0.00 0.00 2.59
4563 11390 7.451877 AGTCTCTTTCTCATGTACCTGTAGAAA 59.548 37.037 16.71 16.71 35.49 2.52
4608 11435 7.215789 TGCCTTTATTTTCTTTTGCAGATTCA 58.784 30.769 0.00 0.00 0.00 2.57
4612 11439 2.704725 TTCTTTTGCAGATTCACGGC 57.295 45.000 0.00 0.00 39.97 5.68
4630 11457 2.684374 CGGCAGTCAAATGGATGATTGA 59.316 45.455 4.28 0.00 38.82 2.57
4662 11489 2.093500 TGAGATTCATCCCAACCGTCTG 60.093 50.000 0.00 0.00 0.00 3.51
4689 11516 7.412563 GCACTCAATGTATGTGTTACGTGTAAT 60.413 37.037 0.00 0.00 33.63 1.89
4697 11525 9.589111 TGTATGTGTTACGTGTAATATCACAAT 57.411 29.630 14.61 8.86 35.04 2.71
4864 11799 8.530804 AAAACGTATTACATACTACTCCCTCT 57.469 34.615 0.00 0.00 33.59 3.69
4868 11803 7.228308 ACGTATTACATACTACTCCCTCTGTTC 59.772 40.741 0.00 0.00 33.59 3.18
4922 11857 7.654568 TGAATCGGATGTATATAGACGTGTTT 58.345 34.615 0.00 0.00 0.00 2.83
4928 11863 7.061905 CGGATGTATATAGACGTGTTTCAATCC 59.938 40.741 0.00 0.00 0.00 3.01
4934 11869 2.671396 AGACGTGTTTCAATCCGTATGC 59.329 45.455 0.00 0.00 33.03 3.14
4937 11872 2.785679 GTGTTTCAATCCGTATGCAGC 58.214 47.619 0.00 0.00 0.00 5.25
4941 11876 0.179048 TCAATCCGTATGCAGCCCAG 60.179 55.000 0.00 0.00 0.00 4.45
4953 11892 5.743636 ATGCAGCCCAGAAATTTCTAAAA 57.256 34.783 20.07 3.40 35.34 1.52
4956 11895 5.011943 TGCAGCCCAGAAATTTCTAAAACAT 59.988 36.000 20.07 2.68 35.34 2.71
5060 11999 2.640284 AAACATTATGCCCCCACCTT 57.360 45.000 0.00 0.00 0.00 3.50
5121 12060 8.463456 ACTTTTGTTTGCATTTTGGAAATTTG 57.537 26.923 0.00 0.00 39.76 2.32
5156 12095 7.410174 ACCACTGGATATTAGGAAACAATTCA 58.590 34.615 0.71 0.00 37.29 2.57
5207 13647 3.485394 TGTGCACATGTTTCCACTATGT 58.515 40.909 17.42 0.00 35.56 2.29
5267 13722 8.167605 ACTGCATTCTGTAGACGTATATTAGT 57.832 34.615 0.00 0.00 34.09 2.24
5268 13723 8.630917 ACTGCATTCTGTAGACGTATATTAGTT 58.369 33.333 0.00 0.00 34.09 2.24
5379 13834 8.819974 TGAAATTTTGAGAGAAAATGTTTCTGC 58.180 29.630 7.93 1.62 31.75 4.26
5416 13871 0.179073 ATGTACGGGCACTGATCTGC 60.179 55.000 0.00 0.00 38.67 4.26
5438 13893 8.642432 TCTGCTGCTCACTTATGTATAATAACT 58.358 33.333 0.00 0.00 0.00 2.24
5464 13919 6.142320 GCGCTTACATTATGTGGCTAAAATTC 59.858 38.462 8.26 0.00 31.66 2.17
5496 13951 2.520536 GGGCTGTGTGGGTGAGTCT 61.521 63.158 0.00 0.00 0.00 3.24
5551 14006 6.846325 AGCTACAGGAGTAAATAAAATCGC 57.154 37.500 0.00 0.00 0.00 4.58
5561 14017 6.338937 AGTAAATAAAATCGCGAGGTTCTCT 58.661 36.000 16.66 1.95 29.33 3.10
5614 14104 0.603065 GCCTCCGTGCCTTGATTTTT 59.397 50.000 0.00 0.00 0.00 1.94
5648 14139 0.668401 GTGGTAGCTACGCGGTTGTT 60.668 55.000 17.48 0.00 0.00 2.83
5673 14164 2.923605 TTTTTGAGACAAACGCGGTT 57.076 40.000 12.47 7.61 0.00 4.44
5674 14165 2.181426 TTTTGAGACAAACGCGGTTG 57.819 45.000 33.86 33.86 34.52 3.77
5676 14167 1.937278 TTGAGACAAACGCGGTTGTA 58.063 45.000 39.66 23.78 41.78 2.41
5678 14169 2.485903 TGAGACAAACGCGGTTGTATT 58.514 42.857 39.66 30.12 41.78 1.89
5680 14171 4.247258 TGAGACAAACGCGGTTGTATTAT 58.753 39.130 39.66 25.77 41.78 1.28
5682 14173 5.179742 TGAGACAAACGCGGTTGTATTATTT 59.820 36.000 39.66 21.26 41.78 1.40
5685 14176 7.754625 AGACAAACGCGGTTGTATTATTTTAT 58.245 30.769 39.66 15.69 41.78 1.40
5712 14203 3.514645 GCAATGTTTAGCCATCAACCAG 58.485 45.455 0.00 0.00 0.00 4.00
5741 14232 5.355596 CAAACAGGCTCTTAGTATCTCCTG 58.644 45.833 4.69 4.69 44.80 3.86
5744 14235 1.621317 GGCTCTTAGTATCTCCTGGCC 59.379 57.143 0.00 0.00 0.00 5.36
5757 14248 2.567615 CTCCTGGCCTGTGTAAAGTACT 59.432 50.000 3.32 0.00 0.00 2.73
5758 14249 2.301870 TCCTGGCCTGTGTAAAGTACTG 59.698 50.000 3.32 0.00 0.00 2.74
5763 14254 4.101274 TGGCCTGTGTAAAGTACTGTGTTA 59.899 41.667 3.32 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.092876 GATACTTTTTCCAACAAACATTGACAA 57.907 29.630 0.00 0.00 0.00 3.18
1 2 8.253810 TGATACTTTTTCCAACAAACATTGACA 58.746 29.630 0.00 0.00 0.00 3.58
2 3 8.641499 TGATACTTTTTCCAACAAACATTGAC 57.359 30.769 0.00 0.00 0.00 3.18
3 4 8.474025 ACTGATACTTTTTCCAACAAACATTGA 58.526 29.630 0.00 0.00 0.00 2.57
4 5 8.647143 ACTGATACTTTTTCCAACAAACATTG 57.353 30.769 0.00 0.00 0.00 2.82
5 6 9.665719 AAACTGATACTTTTTCCAACAAACATT 57.334 25.926 0.00 0.00 0.00 2.71
26 27 9.498307 GGAACGTGTAAATTCCATTATAAACTG 57.502 33.333 0.00 0.00 43.40 3.16
27 28 9.457436 AGGAACGTGTAAATTCCATTATAAACT 57.543 29.630 4.61 0.00 45.90 2.66
33 34 9.233649 ACATTTAGGAACGTGTAAATTCCATTA 57.766 29.630 4.61 0.00 45.90 1.90
34 35 8.026607 CACATTTAGGAACGTGTAAATTCCATT 58.973 33.333 4.61 0.00 45.90 3.16
35 36 7.362574 CCACATTTAGGAACGTGTAAATTCCAT 60.363 37.037 4.61 0.00 45.90 3.41
36 37 6.072397 CCACATTTAGGAACGTGTAAATTCCA 60.072 38.462 4.61 0.00 45.90 3.53
37 38 6.149807 TCCACATTTAGGAACGTGTAAATTCC 59.850 38.462 7.67 1.61 44.14 3.01
38 39 7.136289 TCCACATTTAGGAACGTGTAAATTC 57.864 36.000 7.67 0.00 30.71 2.17
39 40 7.513371 TTCCACATTTAGGAACGTGTAAATT 57.487 32.000 7.67 0.73 40.11 1.82
49 50 5.935945 TCTTCAGTGTTCCACATTTAGGAA 58.064 37.500 0.00 0.00 42.62 3.36
50 51 5.560722 TCTTCAGTGTTCCACATTTAGGA 57.439 39.130 0.00 0.00 36.74 2.94
51 52 6.486657 TCTTTCTTCAGTGTTCCACATTTAGG 59.513 38.462 0.00 0.00 36.74 2.69
52 53 7.355778 GTCTTTCTTCAGTGTTCCACATTTAG 58.644 38.462 0.00 0.00 36.74 1.85
53 54 6.262273 GGTCTTTCTTCAGTGTTCCACATTTA 59.738 38.462 0.00 0.00 36.74 1.40
54 55 5.067805 GGTCTTTCTTCAGTGTTCCACATTT 59.932 40.000 0.00 0.00 36.74 2.32
55 56 4.580580 GGTCTTTCTTCAGTGTTCCACATT 59.419 41.667 0.00 0.00 36.74 2.71
56 57 4.137543 GGTCTTTCTTCAGTGTTCCACAT 58.862 43.478 0.00 0.00 36.74 3.21
57 58 3.054728 TGGTCTTTCTTCAGTGTTCCACA 60.055 43.478 0.00 0.00 36.74 4.17
58 59 3.312697 GTGGTCTTTCTTCAGTGTTCCAC 59.687 47.826 0.00 0.00 36.53 4.02
59 60 3.054728 TGTGGTCTTTCTTCAGTGTTCCA 60.055 43.478 0.00 0.00 0.00 3.53
60 61 3.312697 GTGTGGTCTTTCTTCAGTGTTCC 59.687 47.826 0.00 0.00 0.00 3.62
61 62 3.938963 TGTGTGGTCTTTCTTCAGTGTTC 59.061 43.478 0.00 0.00 0.00 3.18
62 63 3.689649 GTGTGTGGTCTTTCTTCAGTGTT 59.310 43.478 0.00 0.00 0.00 3.32
63 64 3.270877 GTGTGTGGTCTTTCTTCAGTGT 58.729 45.455 0.00 0.00 0.00 3.55
64 65 2.285220 CGTGTGTGGTCTTTCTTCAGTG 59.715 50.000 0.00 0.00 0.00 3.66
65 66 2.550978 CGTGTGTGGTCTTTCTTCAGT 58.449 47.619 0.00 0.00 0.00 3.41
66 67 1.867233 CCGTGTGTGGTCTTTCTTCAG 59.133 52.381 0.00 0.00 0.00 3.02
67 68 1.483004 TCCGTGTGTGGTCTTTCTTCA 59.517 47.619 0.00 0.00 0.00 3.02
68 69 1.865340 GTCCGTGTGTGGTCTTTCTTC 59.135 52.381 0.00 0.00 0.00 2.87
69 70 1.208535 TGTCCGTGTGTGGTCTTTCTT 59.791 47.619 0.00 0.00 0.00 2.52
70 71 0.828022 TGTCCGTGTGTGGTCTTTCT 59.172 50.000 0.00 0.00 0.00 2.52
71 72 0.935196 GTGTCCGTGTGTGGTCTTTC 59.065 55.000 0.00 0.00 0.00 2.62
72 73 0.250793 TGTGTCCGTGTGTGGTCTTT 59.749 50.000 0.00 0.00 0.00 2.52
73 74 0.461339 GTGTGTCCGTGTGTGGTCTT 60.461 55.000 0.00 0.00 0.00 3.01
74 75 1.143183 GTGTGTCCGTGTGTGGTCT 59.857 57.895 0.00 0.00 0.00 3.85
75 76 1.885850 GGTGTGTCCGTGTGTGGTC 60.886 63.158 0.00 0.00 0.00 4.02
76 77 2.188469 GGTGTGTCCGTGTGTGGT 59.812 61.111 0.00 0.00 0.00 4.16
77 78 1.750341 TAGGGTGTGTCCGTGTGTGG 61.750 60.000 0.00 0.00 37.00 4.17
78 79 0.319555 CTAGGGTGTGTCCGTGTGTG 60.320 60.000 0.00 0.00 37.00 3.82
79 80 1.469335 CCTAGGGTGTGTCCGTGTGT 61.469 60.000 0.00 0.00 37.00 3.72
80 81 1.292223 CCTAGGGTGTGTCCGTGTG 59.708 63.158 0.00 0.00 37.00 3.82
81 82 2.580601 GCCTAGGGTGTGTCCGTGT 61.581 63.158 11.72 0.00 37.00 4.49
82 83 2.264794 GCCTAGGGTGTGTCCGTG 59.735 66.667 11.72 0.00 37.00 4.94
83 84 3.001406 GGCCTAGGGTGTGTCCGT 61.001 66.667 11.72 0.00 37.00 4.69
84 85 2.119484 TTTGGCCTAGGGTGTGTCCG 62.119 60.000 11.72 0.00 37.00 4.79
85 86 0.111639 TTTTGGCCTAGGGTGTGTCC 59.888 55.000 11.72 2.10 0.00 4.02
86 87 1.989706 TTTTTGGCCTAGGGTGTGTC 58.010 50.000 11.72 0.00 0.00 3.67
102 103 1.944234 GCCGCACGGGATCCATTTTT 61.944 55.000 15.23 0.00 38.47 1.94
103 104 2.414785 GCCGCACGGGATCCATTTT 61.415 57.895 15.23 0.00 38.47 1.82
104 105 2.828549 GCCGCACGGGATCCATTT 60.829 61.111 15.23 0.00 38.47 2.32
122 123 4.077188 GCTGAAGTCACGCCGCAC 62.077 66.667 0.00 0.00 0.00 5.34
126 127 2.665185 AACCGCTGAAGTCACGCC 60.665 61.111 0.00 0.00 0.00 5.68
127 128 1.891060 CTGAACCGCTGAAGTCACGC 61.891 60.000 0.00 0.00 0.00 5.34
128 129 1.891060 GCTGAACCGCTGAAGTCACG 61.891 60.000 0.00 0.00 0.00 4.35
129 130 1.569479 GGCTGAACCGCTGAAGTCAC 61.569 60.000 0.00 0.00 0.00 3.67
130 131 1.301716 GGCTGAACCGCTGAAGTCA 60.302 57.895 0.00 0.00 0.00 3.41
131 132 2.035442 GGGCTGAACCGCTGAAGTC 61.035 63.158 0.00 0.00 40.62 3.01
132 133 2.032681 GGGCTGAACCGCTGAAGT 59.967 61.111 0.00 0.00 40.62 3.01
133 134 2.032528 TGGGCTGAACCGCTGAAG 59.967 61.111 0.00 0.00 40.62 3.02
134 135 2.281484 GTGGGCTGAACCGCTGAA 60.281 61.111 0.00 0.00 40.62 3.02
135 136 4.329545 GGTGGGCTGAACCGCTGA 62.330 66.667 0.00 0.00 40.83 4.26
136 137 4.641645 TGGTGGGCTGAACCGCTG 62.642 66.667 0.00 0.00 40.86 5.18
137 138 4.335647 CTGGTGGGCTGAACCGCT 62.336 66.667 0.00 0.00 40.86 5.52
138 139 4.329545 TCTGGTGGGCTGAACCGC 62.330 66.667 0.00 0.00 40.86 5.68
139 140 2.358737 GTCTGGTGGGCTGAACCG 60.359 66.667 0.00 0.00 40.86 4.44
140 141 2.034221 GGTCTGGTGGGCTGAACC 59.966 66.667 0.00 0.00 38.26 3.62
141 142 2.358737 CGGTCTGGTGGGCTGAAC 60.359 66.667 0.00 0.00 0.00 3.18
142 143 4.329545 GCGGTCTGGTGGGCTGAA 62.330 66.667 0.00 0.00 0.00 3.02
237 238 2.284405 GAGGGGGTTCCGGAGTGA 60.284 66.667 3.34 0.00 41.52 3.41
302 303 1.375326 GGCGGAGGTGAGGAAACTT 59.625 57.895 0.00 0.00 44.43 2.66
304 305 2.434359 CGGCGGAGGTGAGGAAAC 60.434 66.667 0.00 0.00 0.00 2.78
305 306 4.388499 GCGGCGGAGGTGAGGAAA 62.388 66.667 9.78 0.00 0.00 3.13
322 323 4.366684 GTTGGTGGCTGGAGGGGG 62.367 72.222 0.00 0.00 0.00 5.40
323 324 3.260100 AGTTGGTGGCTGGAGGGG 61.260 66.667 0.00 0.00 0.00 4.79
351 352 1.451927 GTTGCGGAGATGGGCATGA 60.452 57.895 0.00 0.00 39.21 3.07
352 353 2.827051 CGTTGCGGAGATGGGCATG 61.827 63.158 0.00 0.00 39.21 4.06
401 403 1.884579 AGCTGACAATGCAAAGACCAG 59.115 47.619 0.00 1.41 0.00 4.00
420 422 5.230306 CCTACGAGACAAAGAAAGCGAATAG 59.770 44.000 0.00 0.00 0.00 1.73
423 425 3.005050 TCCTACGAGACAAAGAAAGCGAA 59.995 43.478 0.00 0.00 0.00 4.70
424 426 2.555325 TCCTACGAGACAAAGAAAGCGA 59.445 45.455 0.00 0.00 0.00 4.93
441 443 5.030147 ACATGGTCACAAGAATACCTCCTA 58.970 41.667 0.00 0.00 34.23 2.94
443 445 3.941483 CACATGGTCACAAGAATACCTCC 59.059 47.826 0.00 0.00 34.23 4.30
446 448 3.119849 GCACACATGGTCACAAGAATACC 60.120 47.826 0.00 0.00 0.00 2.73
466 468 3.147553 TGGCTGTGTTAATTAGGTGCA 57.852 42.857 0.00 0.00 0.00 4.57
490 492 4.200838 TGACTAATCACGCAGATCCAAA 57.799 40.909 0.00 0.00 35.39 3.28
491 493 3.885724 TGACTAATCACGCAGATCCAA 57.114 42.857 0.00 0.00 35.39 3.53
517 519 2.311294 GTGCATACCACGCAGATCC 58.689 57.895 0.00 0.00 40.78 3.36
558 560 0.875908 GACATCTGCGCGATTAGCCA 60.876 55.000 12.10 0.00 44.76 4.75
567 569 2.894387 GCCTGGAGACATCTGCGC 60.894 66.667 0.00 0.00 41.51 6.09
581 583 0.613260 TTGTTAGCTCGGATGTGCCT 59.387 50.000 0.00 0.00 35.20 4.75
651 653 1.221414 GAGAATCATCTTTCCGCCCG 58.779 55.000 0.00 0.00 35.54 6.13
676 678 4.984785 TCTCATATATTTGCTCGCTGTGAC 59.015 41.667 0.00 0.00 0.00 3.67
677 679 5.200368 TCTCATATATTTGCTCGCTGTGA 57.800 39.130 0.00 0.00 0.00 3.58
681 683 5.694006 GTCAGTTCTCATATATTTGCTCGCT 59.306 40.000 0.00 0.00 0.00 4.93
682 684 5.107298 GGTCAGTTCTCATATATTTGCTCGC 60.107 44.000 0.00 0.00 0.00 5.03
683 685 5.985530 TGGTCAGTTCTCATATATTTGCTCG 59.014 40.000 0.00 0.00 0.00 5.03
684 686 7.792374 TTGGTCAGTTCTCATATATTTGCTC 57.208 36.000 0.00 0.00 0.00 4.26
685 687 8.757982 AATTGGTCAGTTCTCATATATTTGCT 57.242 30.769 0.00 0.00 0.00 3.91
686 688 8.844244 AGAATTGGTCAGTTCTCATATATTTGC 58.156 33.333 3.37 0.00 32.86 3.68
703 705 7.004555 AGGGTTTATTTTTGGAGAATTGGTC 57.995 36.000 0.00 0.00 0.00 4.02
768 770 1.273327 GCCCAATGCATATGGCCTAAC 59.727 52.381 22.74 7.37 43.89 2.34
769 771 1.631405 GCCCAATGCATATGGCCTAA 58.369 50.000 22.74 0.00 43.89 2.69
770 772 3.362040 GCCCAATGCATATGGCCTA 57.638 52.632 22.74 0.00 43.89 3.93
771 773 4.203245 GCCCAATGCATATGGCCT 57.797 55.556 22.74 0.00 43.89 5.19
779 781 3.887841 AGGTTAACCGTGCCCAATGCA 62.888 52.381 18.91 0.00 44.77 3.96
780 782 1.214325 GGTTAACCGTGCCCAATGC 59.786 57.895 9.34 0.00 41.77 3.56
781 783 0.525761 CAGGTTAACCGTGCCCAATG 59.474 55.000 18.91 5.48 42.08 2.82
782 784 0.610785 CCAGGTTAACCGTGCCCAAT 60.611 55.000 18.91 0.00 42.08 3.16
783 785 1.228306 CCAGGTTAACCGTGCCCAA 60.228 57.895 18.91 0.00 42.08 4.12
784 786 2.432563 CCAGGTTAACCGTGCCCA 59.567 61.111 18.91 0.00 42.08 5.36
785 787 3.060000 GCCAGGTTAACCGTGCCC 61.060 66.667 23.29 11.31 42.08 5.36
786 788 3.428282 CGCCAGGTTAACCGTGCC 61.428 66.667 25.94 12.92 42.08 5.01
787 789 1.303091 AATCGCCAGGTTAACCGTGC 61.303 55.000 23.68 23.68 42.08 5.34
788 790 1.931172 CTAATCGCCAGGTTAACCGTG 59.069 52.381 18.91 16.00 42.08 4.94
789 791 1.551883 ACTAATCGCCAGGTTAACCGT 59.448 47.619 18.91 4.69 42.08 4.83
790 792 2.304751 ACTAATCGCCAGGTTAACCG 57.695 50.000 18.91 13.27 42.08 4.44
791 793 4.216902 ACAAAACTAATCGCCAGGTTAACC 59.783 41.667 17.41 17.41 0.00 2.85
792 794 5.366829 ACAAAACTAATCGCCAGGTTAAC 57.633 39.130 0.00 0.00 0.00 2.01
793 795 5.996513 TGTACAAAACTAATCGCCAGGTTAA 59.003 36.000 0.00 0.00 0.00 2.01
794 796 5.549347 TGTACAAAACTAATCGCCAGGTTA 58.451 37.500 0.00 0.00 0.00 2.85
795 797 4.391155 TGTACAAAACTAATCGCCAGGTT 58.609 39.130 0.00 0.00 0.00 3.50
796 798 4.000988 CTGTACAAAACTAATCGCCAGGT 58.999 43.478 0.00 0.00 0.00 4.00
797 799 4.000988 ACTGTACAAAACTAATCGCCAGG 58.999 43.478 0.00 0.00 0.00 4.45
798 800 4.929808 AGACTGTACAAAACTAATCGCCAG 59.070 41.667 0.00 0.00 0.00 4.85
799 801 4.890088 AGACTGTACAAAACTAATCGCCA 58.110 39.130 0.00 0.00 0.00 5.69
800 802 7.399523 CAATAGACTGTACAAAACTAATCGCC 58.600 38.462 0.00 0.00 0.00 5.54
801 803 7.399523 CCAATAGACTGTACAAAACTAATCGC 58.600 38.462 0.00 0.00 0.00 4.58
802 804 7.277981 AGCCAATAGACTGTACAAAACTAATCG 59.722 37.037 0.00 0.00 0.00 3.34
803 805 8.494016 AGCCAATAGACTGTACAAAACTAATC 57.506 34.615 0.00 0.00 0.00 1.75
804 806 9.601217 CTAGCCAATAGACTGTACAAAACTAAT 57.399 33.333 0.00 0.00 32.76 1.73
805 807 7.548075 GCTAGCCAATAGACTGTACAAAACTAA 59.452 37.037 2.29 0.00 32.76 2.24
806 808 7.039882 GCTAGCCAATAGACTGTACAAAACTA 58.960 38.462 2.29 1.68 32.76 2.24
807 809 5.875359 GCTAGCCAATAGACTGTACAAAACT 59.125 40.000 2.29 0.00 32.76 2.66
808 810 5.875359 AGCTAGCCAATAGACTGTACAAAAC 59.125 40.000 12.13 0.00 32.76 2.43
809 811 6.049955 AGCTAGCCAATAGACTGTACAAAA 57.950 37.500 12.13 0.00 32.76 2.44
810 812 5.677319 AGCTAGCCAATAGACTGTACAAA 57.323 39.130 12.13 0.00 32.76 2.83
811 813 5.221263 GCTAGCTAGCCAATAGACTGTACAA 60.221 44.000 31.67 0.00 43.39 2.41
812 814 4.278669 GCTAGCTAGCCAATAGACTGTACA 59.721 45.833 31.67 0.00 43.39 2.90
813 815 4.800784 GCTAGCTAGCCAATAGACTGTAC 58.199 47.826 31.67 2.16 43.39 2.90
827 829 5.055812 ACTTACTGTACTACGGCTAGCTAG 58.944 45.833 16.84 16.84 0.00 3.42
828 830 5.028549 ACTTACTGTACTACGGCTAGCTA 57.971 43.478 15.72 0.00 0.00 3.32
829 831 3.883669 ACTTACTGTACTACGGCTAGCT 58.116 45.455 15.72 0.00 0.00 3.32
830 832 5.741388 TTACTTACTGTACTACGGCTAGC 57.259 43.478 6.04 6.04 0.00 3.42
831 833 6.317391 ACCTTTACTTACTGTACTACGGCTAG 59.683 42.308 0.00 0.00 0.00 3.42
832 834 6.094048 CACCTTTACTTACTGTACTACGGCTA 59.906 42.308 0.00 0.00 0.00 3.93
833 835 5.012893 ACCTTTACTTACTGTACTACGGCT 58.987 41.667 0.00 0.00 0.00 5.52
834 836 5.098211 CACCTTTACTTACTGTACTACGGC 58.902 45.833 0.00 0.00 0.00 5.68
835 837 5.644644 CCACCTTTACTTACTGTACTACGG 58.355 45.833 0.00 0.00 0.00 4.02
836 838 5.098211 GCCACCTTTACTTACTGTACTACG 58.902 45.833 0.00 0.00 0.00 3.51
837 839 5.186603 AGGCCACCTTTACTTACTGTACTAC 59.813 44.000 5.01 0.00 0.00 2.73
838 840 5.336102 AGGCCACCTTTACTTACTGTACTA 58.664 41.667 5.01 0.00 0.00 1.82
839 841 4.165760 AGGCCACCTTTACTTACTGTACT 58.834 43.478 5.01 0.00 0.00 2.73
840 842 4.548451 AGGCCACCTTTACTTACTGTAC 57.452 45.455 5.01 0.00 0.00 2.90
841 843 5.781818 ACTTAGGCCACCTTTACTTACTGTA 59.218 40.000 5.01 0.00 34.61 2.74
842 844 4.596212 ACTTAGGCCACCTTTACTTACTGT 59.404 41.667 5.01 0.00 34.61 3.55
843 845 5.161943 ACTTAGGCCACCTTTACTTACTG 57.838 43.478 5.01 0.00 34.61 2.74
844 846 6.021672 AGTACTTAGGCCACCTTTACTTACT 58.978 40.000 5.01 0.00 34.61 2.24
845 847 6.291648 AGTACTTAGGCCACCTTTACTTAC 57.708 41.667 5.01 0.00 34.61 2.34
846 848 6.940430 AAGTACTTAGGCCACCTTTACTTA 57.060 37.500 6.26 0.00 34.07 2.24
847 849 5.837770 AAGTACTTAGGCCACCTTTACTT 57.162 39.130 6.26 8.18 34.61 2.24
848 850 5.837770 AAAGTACTTAGGCCACCTTTACT 57.162 39.130 8.92 1.63 34.61 2.24
849 851 5.999600 TCAAAAGTACTTAGGCCACCTTTAC 59.000 40.000 8.92 0.00 34.61 2.01
850 852 6.183361 ACTCAAAAGTACTTAGGCCACCTTTA 60.183 38.462 8.92 0.00 32.03 1.85
851 853 5.056553 TCAAAAGTACTTAGGCCACCTTT 57.943 39.130 8.92 0.44 34.61 3.11
852 854 4.104261 ACTCAAAAGTACTTAGGCCACCTT 59.896 41.667 8.92 0.00 32.03 3.50
853 855 3.651423 ACTCAAAAGTACTTAGGCCACCT 59.349 43.478 8.92 0.00 33.68 4.00
854 856 3.751698 CACTCAAAAGTACTTAGGCCACC 59.248 47.826 8.92 0.00 33.25 4.61
855 857 4.386711 ACACTCAAAAGTACTTAGGCCAC 58.613 43.478 8.92 0.00 33.25 5.01
856 858 4.699925 ACACTCAAAAGTACTTAGGCCA 57.300 40.909 8.92 0.00 33.25 5.36
857 859 5.791666 AGTACACTCAAAAGTACTTAGGCC 58.208 41.667 8.92 0.00 46.36 5.19
864 866 9.404348 GTAGTTCCTAAGTACACTCAAAAGTAC 57.596 37.037 0.00 0.00 40.60 2.73
865 867 9.135189 TGTAGTTCCTAAGTACACTCAAAAGTA 57.865 33.333 0.00 0.00 41.18 2.24
866 868 8.015185 TGTAGTTCCTAAGTACACTCAAAAGT 57.985 34.615 0.00 0.00 41.18 2.66
875 877 6.369890 CAGTACGAGTGTAGTTCCTAAGTACA 59.630 42.308 0.00 3.74 43.18 2.90
876 878 6.370166 ACAGTACGAGTGTAGTTCCTAAGTAC 59.630 42.308 0.00 0.00 37.72 2.73
877 879 6.467677 ACAGTACGAGTGTAGTTCCTAAGTA 58.532 40.000 0.00 0.00 31.76 2.24
878 880 5.312079 ACAGTACGAGTGTAGTTCCTAAGT 58.688 41.667 0.00 0.00 31.76 2.24
879 881 5.876612 ACAGTACGAGTGTAGTTCCTAAG 57.123 43.478 0.00 0.00 31.76 2.18
880 882 7.928307 ATAACAGTACGAGTGTAGTTCCTAA 57.072 36.000 0.00 0.00 31.76 2.69
881 883 8.040727 TGTATAACAGTACGAGTGTAGTTCCTA 58.959 37.037 0.00 0.00 31.76 2.94
882 884 6.881065 TGTATAACAGTACGAGTGTAGTTCCT 59.119 38.462 0.00 0.00 31.76 3.36
883 885 6.963805 GTGTATAACAGTACGAGTGTAGTTCC 59.036 42.308 0.00 0.00 31.76 3.62
884 886 7.521529 TGTGTATAACAGTACGAGTGTAGTTC 58.478 38.462 0.00 0.00 31.76 3.01
885 887 7.439157 TGTGTATAACAGTACGAGTGTAGTT 57.561 36.000 0.00 0.00 31.76 2.24
886 888 7.439157 TTGTGTATAACAGTACGAGTGTAGT 57.561 36.000 0.00 0.00 40.74 2.73
887 889 8.732413 TTTTGTGTATAACAGTACGAGTGTAG 57.268 34.615 0.00 0.00 40.74 2.74
888 890 8.567104 TCTTTTGTGTATAACAGTACGAGTGTA 58.433 33.333 0.00 0.00 40.74 2.90
889 891 7.428020 TCTTTTGTGTATAACAGTACGAGTGT 58.572 34.615 0.00 0.00 40.74 3.55
890 892 7.862741 TCTTTTGTGTATAACAGTACGAGTG 57.137 36.000 0.00 0.00 40.74 3.51
891 893 9.784680 CTATCTTTTGTGTATAACAGTACGAGT 57.215 33.333 0.00 0.00 40.74 4.18
892 894 9.234384 CCTATCTTTTGTGTATAACAGTACGAG 57.766 37.037 0.00 0.00 40.74 4.18
893 895 8.959548 TCCTATCTTTTGTGTATAACAGTACGA 58.040 33.333 0.00 0.00 40.74 3.43
894 896 9.577110 TTCCTATCTTTTGTGTATAACAGTACG 57.423 33.333 0.00 0.00 40.74 3.67
907 909 6.597562 TGTTGGTGTAGTTCCTATCTTTTGT 58.402 36.000 0.00 0.00 0.00 2.83
910 912 7.016268 TCTCTTGTTGGTGTAGTTCCTATCTTT 59.984 37.037 0.00 0.00 0.00 2.52
915 917 5.391256 TCTCTCTTGTTGGTGTAGTTCCTA 58.609 41.667 0.00 0.00 0.00 2.94
917 919 4.602340 TCTCTCTTGTTGGTGTAGTTCC 57.398 45.455 0.00 0.00 0.00 3.62
942 944 1.222115 GCTCGAAGTGTGGCTTTCGT 61.222 55.000 6.53 0.00 37.59 3.85
953 955 0.036010 CAAGGTCCATGGCTCGAAGT 60.036 55.000 6.96 0.00 0.00 3.01
1060 1062 1.476891 TCCCTCTCGAGAAATTCCACG 59.523 52.381 17.36 1.72 0.00 4.94
1102 1104 1.675310 CATGGCCACTTTGCGGAGA 60.675 57.895 8.16 0.00 0.00 3.71
1199 1201 2.035066 CCACCAGGAAGCTTTCAACAAG 59.965 50.000 7.68 0.00 36.89 3.16
1201 1203 1.691196 CCACCAGGAAGCTTTCAACA 58.309 50.000 7.68 0.00 36.89 3.33
1401 1403 1.663702 GCAGCAGCCAAACTTGCAG 60.664 57.895 0.00 0.00 33.58 4.41
1402 1404 1.957765 TTGCAGCAGCCAAACTTGCA 61.958 50.000 0.00 0.77 41.13 4.08
1409 1414 2.628696 CGATGGTTGCAGCAGCCAA 61.629 57.895 32.11 17.21 46.92 4.52
1498 1521 3.634397 TCTGCCAACCTCTTGATTAGG 57.366 47.619 0.00 0.00 40.20 2.69
1511 1534 3.284617 CACAATCATCTCCATCTGCCAA 58.715 45.455 0.00 0.00 0.00 4.52
1602 1625 6.430925 TGCTTGTATCTTGTCATAAACTGCTT 59.569 34.615 0.00 0.00 0.00 3.91
1645 1668 4.537015 GATTCTGACCAACCGAAACAAAG 58.463 43.478 0.00 0.00 0.00 2.77
1657 1680 6.874278 TTCTTCAGATTAGGATTCTGACCA 57.126 37.500 3.01 0.00 46.92 4.02
1751 1777 3.451540 TCTCAGAGCTTCTCAATGAGCAT 59.548 43.478 5.18 0.00 34.71 3.79
1765 1791 2.638556 TCGTAAGCAGTTCTCAGAGC 57.361 50.000 0.00 0.00 37.18 4.09
1769 1795 4.299155 CTCTTGTTCGTAAGCAGTTCTCA 58.701 43.478 0.00 0.00 37.18 3.27
1825 1861 6.996509 ACATGCATTTGAAATGAGGTAAGTT 58.003 32.000 21.14 0.00 0.00 2.66
1827 1863 7.894376 AAACATGCATTTGAAATGAGGTAAG 57.106 32.000 21.14 6.83 0.00 2.34
1838 1874 5.815581 AGGGAGTAGTAAACATGCATTTGA 58.184 37.500 0.00 0.00 0.00 2.69
1858 1894 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1879 1915 7.180229 TGGTCCATAGTGAAATCTCTACAAAGA 59.820 37.037 0.00 0.00 0.00 2.52
1880 1916 7.278868 GTGGTCCATAGTGAAATCTCTACAAAG 59.721 40.741 0.00 0.00 0.00 2.77
1881 1917 7.103641 GTGGTCCATAGTGAAATCTCTACAAA 58.896 38.462 0.00 0.00 0.00 2.83
1882 1918 6.212589 TGTGGTCCATAGTGAAATCTCTACAA 59.787 38.462 0.00 0.00 0.00 2.41
1889 1925 4.750098 CCGTATGTGGTCCATAGTGAAATC 59.250 45.833 0.00 0.00 36.71 2.17
1890 1926 4.407621 TCCGTATGTGGTCCATAGTGAAAT 59.592 41.667 0.00 0.00 36.71 2.17
1891 1927 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
1892 1928 3.367321 TCCGTATGTGGTCCATAGTGAA 58.633 45.455 0.00 0.00 36.71 3.18
1894 1930 3.069586 ACATCCGTATGTGGTCCATAGTG 59.930 47.826 0.00 0.00 44.79 2.74
1895 1931 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
1896 1932 5.410924 CATACATCCGTATGTGGTCCATAG 58.589 45.833 3.56 0.00 46.70 2.23
1897 1933 5.400066 CATACATCCGTATGTGGTCCATA 57.600 43.478 3.56 0.00 46.70 2.74
1898 1934 4.271696 CATACATCCGTATGTGGTCCAT 57.728 45.455 3.56 0.00 46.70 3.41
1899 1935 3.744238 CATACATCCGTATGTGGTCCA 57.256 47.619 3.56 0.00 46.70 4.02
1907 1943 8.749354 TCTAAATGCATCTACATACATCCGTAT 58.251 33.333 0.00 0.00 38.96 3.06
1908 1944 8.117813 TCTAAATGCATCTACATACATCCGTA 57.882 34.615 0.00 0.00 0.00 4.02
1909 1945 6.993079 TCTAAATGCATCTACATACATCCGT 58.007 36.000 0.00 0.00 0.00 4.69
1910 1946 7.889589 TTCTAAATGCATCTACATACATCCG 57.110 36.000 0.00 0.00 0.00 4.18
1921 1957 9.717942 GAGTGAACCTATATTCTAAATGCATCT 57.282 33.333 0.00 0.00 0.00 2.90
1922 1958 9.494271 TGAGTGAACCTATATTCTAAATGCATC 57.506 33.333 0.00 0.00 0.00 3.91
1924 1960 9.851686 AATGAGTGAACCTATATTCTAAATGCA 57.148 29.630 0.00 0.00 0.00 3.96
1932 1968 8.979574 CGGAGTAAAATGAGTGAACCTATATTC 58.020 37.037 0.00 0.00 0.00 1.75
1933 1969 8.483758 ACGGAGTAAAATGAGTGAACCTATATT 58.516 33.333 0.00 0.00 41.94 1.28
1934 1970 8.019656 ACGGAGTAAAATGAGTGAACCTATAT 57.980 34.615 0.00 0.00 41.94 0.86
1935 1971 7.414222 ACGGAGTAAAATGAGTGAACCTATA 57.586 36.000 0.00 0.00 41.94 1.31
1936 1972 6.295719 ACGGAGTAAAATGAGTGAACCTAT 57.704 37.500 0.00 0.00 41.94 2.57
1937 1973 5.733620 ACGGAGTAAAATGAGTGAACCTA 57.266 39.130 0.00 0.00 41.94 3.08
1938 1974 4.618920 ACGGAGTAAAATGAGTGAACCT 57.381 40.909 0.00 0.00 41.94 3.50
1954 1990 4.600692 TCATTATGGACCACATACGGAG 57.399 45.455 0.00 0.00 41.61 4.63
1955 1991 5.360649 TTTCATTATGGACCACATACGGA 57.639 39.130 0.00 0.00 41.61 4.69
1956 1992 5.997746 AGATTTCATTATGGACCACATACGG 59.002 40.000 0.00 0.00 41.61 4.02
1957 1993 6.931281 AGAGATTTCATTATGGACCACATACG 59.069 38.462 0.00 0.00 41.61 3.06
1958 1994 7.389053 GGAGAGATTTCATTATGGACCACATAC 59.611 40.741 0.00 0.00 41.61 2.39
1959 1995 7.072328 TGGAGAGATTTCATTATGGACCACATA 59.928 37.037 0.00 0.00 41.03 2.29
1960 1996 6.126390 TGGAGAGATTTCATTATGGACCACAT 60.126 38.462 0.00 0.00 43.68 3.21
1961 1997 5.191522 TGGAGAGATTTCATTATGGACCACA 59.808 40.000 0.00 0.00 0.00 4.17
1962 1998 5.684704 TGGAGAGATTTCATTATGGACCAC 58.315 41.667 0.00 0.00 0.00 4.16
1963 1999 5.974156 TGGAGAGATTTCATTATGGACCA 57.026 39.130 0.00 0.00 0.00 4.02
1964 2000 7.012799 GTCTTTGGAGAGATTTCATTATGGACC 59.987 40.741 0.00 0.00 31.07 4.46
1965 2001 7.772757 AGTCTTTGGAGAGATTTCATTATGGAC 59.227 37.037 0.00 0.00 31.07 4.02
1966 2002 7.865820 AGTCTTTGGAGAGATTTCATTATGGA 58.134 34.615 0.00 0.00 31.07 3.41
1967 2003 8.517062 AAGTCTTTGGAGAGATTTCATTATGG 57.483 34.615 0.00 0.00 31.07 2.74
1979 2015 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
1980 2016 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
1981 2017 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
1982 2018 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
1983 2019 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
1984 2020 8.202137 TCCTCCGTTCCTAAATATAAGTCTTTG 58.798 37.037 0.00 0.00 0.00 2.77
1985 2021 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
1986 2022 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
1987 2023 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
1988 2024 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
1989 2025 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
1995 2031 8.953223 ACTATATACTTCCTCCGTTCCTAAAT 57.047 34.615 0.00 0.00 0.00 1.40
1996 2032 8.773033 AACTATATACTTCCTCCGTTCCTAAA 57.227 34.615 0.00 0.00 0.00 1.85
1997 2033 8.773033 AAACTATATACTTCCTCCGTTCCTAA 57.227 34.615 0.00 0.00 0.00 2.69
1998 2034 9.866655 TTAAACTATATACTTCCTCCGTTCCTA 57.133 33.333 0.00 0.00 0.00 2.94
1999 2035 8.773033 TTAAACTATATACTTCCTCCGTTCCT 57.227 34.615 0.00 0.00 0.00 3.36
2000 2036 9.993454 AATTAAACTATATACTTCCTCCGTTCC 57.007 33.333 0.00 0.00 0.00 3.62
2152 2285 4.040376 CGGACGCTTAAAGGACACTATAC 58.960 47.826 0.00 0.00 0.00 1.47
2171 2472 2.166459 CTGCCTCACTCTTTATCACGGA 59.834 50.000 0.00 0.00 0.00 4.69
2201 2503 5.796424 AAACATCTGCAGGAAAATGAAGT 57.204 34.783 15.13 0.00 0.00 3.01
2415 5324 6.037062 TGGAAGACACTATCAAAATACATGCG 59.963 38.462 0.00 0.00 0.00 4.73
2476 5390 3.190327 CCATTCACGACATGGTGCTTTAA 59.810 43.478 0.00 0.00 37.07 1.52
2497 5415 8.264347 ACCAACAATCCAAAATGGTATTATTCC 58.736 33.333 0.00 0.00 42.38 3.01
2505 5423 4.653341 TCTCAACCAACAATCCAAAATGGT 59.347 37.500 0.00 0.00 45.97 3.55
2518 5437 1.909700 TGGGAAGCATCTCAACCAAC 58.090 50.000 0.00 0.00 31.47 3.77
2534 5453 8.148351 TCGTCCTAGAAATAGAACAAATATGGG 58.852 37.037 0.00 0.00 0.00 4.00
2543 5462 8.242739 ACTAAAGTGTCGTCCTAGAAATAGAAC 58.757 37.037 0.00 0.00 0.00 3.01
2588 5521 2.711542 ACTATTGACAAGGGAAAGCGG 58.288 47.619 0.00 0.00 0.00 5.52
2644 5577 5.301045 AGCACATTTGATTATGTCCCATGAG 59.699 40.000 0.00 0.00 36.64 2.90
2671 5604 3.548770 ACTGCCACATCCACTATCAATG 58.451 45.455 0.00 0.00 0.00 2.82
2682 5615 5.011090 TGTGATTACTCTACTGCCACATC 57.989 43.478 0.00 0.00 0.00 3.06
2689 5622 7.074507 ACGAGTAGTTGTGATTACTCTACTG 57.925 40.000 20.97 16.79 40.83 2.74
2732 5665 3.004629 TGCTTGTAAATGTCACTTGCCAG 59.995 43.478 0.00 0.00 0.00 4.85
2821 5754 8.153221 TCTTAACTGATTGGTCATAAGGGTTA 57.847 34.615 0.00 0.00 31.95 2.85
2895 5828 5.551233 TGGCCAATAAGCTAGCTATTGTAG 58.449 41.667 27.07 20.05 31.29 2.74
2920 5853 5.336690 CCCAGACCAATCATTTACAGGTTTG 60.337 44.000 0.00 0.00 35.07 2.93
2926 5859 3.075283 ACACCCCAGACCAATCATTTACA 59.925 43.478 0.00 0.00 0.00 2.41
2932 5865 2.556766 TCATACACCCCAGACCAATCA 58.443 47.619 0.00 0.00 0.00 2.57
2947 5880 8.912988 TCATTCCCAAAACCAATAGAATCATAC 58.087 33.333 0.00 0.00 0.00 2.39
2953 5886 9.540538 TTATCTTCATTCCCAAAACCAATAGAA 57.459 29.630 0.00 0.00 0.00 2.10
3034 5967 6.416750 GCAATAAACAAAGCCGTGGATAATAC 59.583 38.462 0.00 0.00 0.00 1.89
3053 5986 6.043822 TCAGGGTATATGCTTAGGTGCAATAA 59.956 38.462 0.00 0.00 46.61 1.40
3092 6031 6.583806 CACTTCCATATCAAAGTGTGCTTTTC 59.416 38.462 14.56 0.00 44.65 2.29
3138 6077 0.405585 CCCTTTTCCTGCTTCCTCCA 59.594 55.000 0.00 0.00 0.00 3.86
3139 6078 0.405973 ACCCTTTTCCTGCTTCCTCC 59.594 55.000 0.00 0.00 0.00 4.30
3146 6085 5.921962 ATCTCAAATAACCCTTTTCCTGC 57.078 39.130 0.00 0.00 0.00 4.85
3303 6242 5.507077 TGTTCGATGCAGTAACAAAACTTC 58.493 37.500 8.39 0.00 30.54 3.01
3349 6294 2.133281 TGGCTAACCTACGAGCAGTA 57.867 50.000 0.00 0.00 40.64 2.74
3374 6319 4.040095 TCCATCCTGCTCTATGACTTCATG 59.960 45.833 1.77 0.00 37.15 3.07
3416 6364 2.099141 TATGACCTCACTTGCTGCAC 57.901 50.000 0.00 0.00 0.00 4.57
3497 6445 3.503748 GTGCACTCTTCTAAAGCCAACAT 59.496 43.478 10.32 0.00 0.00 2.71
3525 6473 4.635765 TCATAAAGAATTGCTCACTTCCCG 59.364 41.667 0.00 0.00 0.00 5.14
3592 6543 2.308866 CCCAAGGTACCTCAGGTGAATT 59.691 50.000 24.33 2.37 36.19 2.17
3629 6580 3.272551 TCTTTAGGGACCTCTAAGCTCCT 59.727 47.826 0.00 0.00 31.73 3.69
3647 6631 9.035890 CAAAAACCTTAGATCCCCTATTTCTTT 57.964 33.333 0.00 0.00 0.00 2.52
3683 6667 2.770164 ATGTAAGCTCCGCTCAAGTT 57.230 45.000 0.00 0.00 38.25 2.66
3784 6771 8.424918 TCTTCCAGAGATGTTAGATTATTCCAC 58.575 37.037 0.00 0.00 0.00 4.02
3789 6776 7.854166 AGCTCTTCCAGAGATGTTAGATTAT 57.146 36.000 4.89 0.00 45.07 1.28
3790 6777 7.780271 TGTAGCTCTTCCAGAGATGTTAGATTA 59.220 37.037 4.89 0.00 45.07 1.75
3823 6810 0.980423 GAAAGTCTGGAGAGGCAGGT 59.020 55.000 0.00 0.00 0.00 4.00
3825 6812 1.898472 TCAGAAAGTCTGGAGAGGCAG 59.102 52.381 5.46 0.00 44.39 4.85
3828 6815 3.307339 CCCTTTCAGAAAGTCTGGAGAGG 60.307 52.174 19.58 8.68 44.39 3.69
3860 6847 2.909006 TCAACTCCCTCAGCTTCTTCAT 59.091 45.455 0.00 0.00 0.00 2.57
3866 6853 5.902431 AGAGTATATTCAACTCCCTCAGCTT 59.098 40.000 0.00 0.00 43.64 3.74
3893 6883 9.825109 TTTGAACAACATATTATCGTCCTCATA 57.175 29.630 0.00 0.00 0.00 2.15
3895 6885 8.038351 TCTTTGAACAACATATTATCGTCCTCA 58.962 33.333 0.00 0.00 0.00 3.86
3962 6955 7.287061 TCTCCATACCAACCAATAACCATTAG 58.713 38.462 0.00 0.00 0.00 1.73
3972 6965 4.503714 GGATTCTCTCCATACCAACCAA 57.496 45.455 0.00 0.00 44.26 3.67
3983 6976 1.072015 CCATGGCTCAGGATTCTCTCC 59.928 57.143 0.00 0.00 45.33 3.71
3989 7012 1.588239 TCAGACCATGGCTCAGGATT 58.412 50.000 13.04 0.00 0.00 3.01
3995 10758 1.202580 AGCGTAATCAGACCATGGCTC 60.203 52.381 13.04 8.93 0.00 4.70
4055 10818 4.748144 CCCAGGAAGCAGGCCACC 62.748 72.222 5.01 0.00 0.00 4.61
4124 10887 0.038892 TCCGTAGCCGTCAGTTTCAC 60.039 55.000 0.00 0.00 0.00 3.18
4144 10907 2.957491 GGATCTCCATATCCTGCGAG 57.043 55.000 0.00 0.00 41.99 5.03
4177 10940 2.284263 TGCACAGAGTAATGAGCTCG 57.716 50.000 9.64 0.00 37.62 5.03
4215 10978 3.881688 CTCCATGGTATCAGGAAAAGCAG 59.118 47.826 12.58 0.00 0.00 4.24
4317 11080 3.694566 GGTGAACTCAAAACACTCAAGGT 59.305 43.478 0.00 0.00 35.28 3.50
4424 11190 2.484889 GTCGATGCCCATCCTAGTTTC 58.515 52.381 2.88 0.00 34.40 2.78
4432 11213 1.718757 GCAACAGGTCGATGCCCATC 61.719 60.000 0.00 0.00 37.44 3.51
4445 11226 4.764336 CGCATGTGCCGGCAACAG 62.764 66.667 34.66 23.84 37.91 3.16
4452 11260 2.816692 CTTCAACGACGCATGTGCCG 62.817 60.000 13.62 13.62 37.91 5.69
4519 11331 6.398918 AGAGACTACATTTGCGATGTTAGTT 58.601 36.000 10.32 4.93 33.76 2.24
4561 11388 6.758416 GGCAACATGAGAAAGAAACTCTTTTT 59.242 34.615 0.00 0.00 45.85 1.94
4563 11390 5.595952 AGGCAACATGAGAAAGAAACTCTTT 59.404 36.000 0.00 1.32 44.64 2.52
4608 11435 2.424601 CAATCATCCATTTGACTGCCGT 59.575 45.455 0.00 0.00 0.00 5.68
4612 11439 5.319140 TGCTTCAATCATCCATTTGACTG 57.681 39.130 0.00 0.00 31.87 3.51
4630 11457 3.380637 GGATGAATCTCAACTGCATGCTT 59.619 43.478 20.33 2.28 0.00 3.91
4662 11489 3.682858 ACGTAACACATACATTGAGTGCC 59.317 43.478 0.00 0.00 36.76 5.01
4922 11857 0.179048 CTGGGCTGCATACGGATTGA 60.179 55.000 0.50 0.00 0.00 2.57
4928 11863 2.684881 AGAAATTTCTGGGCTGCATACG 59.315 45.455 19.86 0.00 35.89 3.06
4934 11869 6.928520 AGATGTTTTAGAAATTTCTGGGCTG 58.071 36.000 27.37 0.00 38.19 4.85
4953 11892 5.070047 ACCTCCGTTCCGAATTATAAGATGT 59.930 40.000 0.00 0.00 0.00 3.06
4956 11895 5.829924 ACTACCTCCGTTCCGAATTATAAGA 59.170 40.000 0.00 0.00 0.00 2.10
4987 11926 9.077885 TCCTCAGCAAAACAATAAAGAAAGTAT 57.922 29.630 0.00 0.00 0.00 2.12
4988 11927 8.349983 GTCCTCAGCAAAACAATAAAGAAAGTA 58.650 33.333 0.00 0.00 0.00 2.24
4989 11928 7.147915 TGTCCTCAGCAAAACAATAAAGAAAGT 60.148 33.333 0.00 0.00 0.00 2.66
4990 11929 7.202526 TGTCCTCAGCAAAACAATAAAGAAAG 58.797 34.615 0.00 0.00 0.00 2.62
5006 11945 0.398318 AGAACCCTGTTGTCCTCAGC 59.602 55.000 0.00 0.00 0.00 4.26
5060 11999 8.768957 TGTCAAAACTGATTTCAAAATGAACA 57.231 26.923 0.00 0.00 35.89 3.18
5121 12060 7.993183 TCCTAATATCCAGTGGTCTGAAATTTC 59.007 37.037 11.41 11.41 43.76 2.17
5184 13624 4.523943 ACATAGTGGAAACATGTGCACAAT 59.476 37.500 25.72 12.67 46.14 2.71
5212 13652 8.918202 AGTGAAAATTATATCCCTGCGAATAA 57.082 30.769 0.00 0.00 0.00 1.40
5213 13653 9.653287 CTAGTGAAAATTATATCCCTGCGAATA 57.347 33.333 0.00 0.00 0.00 1.75
5214 13654 8.157476 ACTAGTGAAAATTATATCCCTGCGAAT 58.843 33.333 0.00 0.00 0.00 3.34
5215 13655 7.506114 ACTAGTGAAAATTATATCCCTGCGAA 58.494 34.615 0.00 0.00 0.00 4.70
5216 13656 7.062749 ACTAGTGAAAATTATATCCCTGCGA 57.937 36.000 0.00 0.00 0.00 5.10
5217 13657 7.730364 AACTAGTGAAAATTATATCCCTGCG 57.270 36.000 0.00 0.00 0.00 5.18
5218 13658 9.780186 AGTAACTAGTGAAAATTATATCCCTGC 57.220 33.333 0.00 0.00 0.00 4.85
5220 13660 9.780186 GCAGTAACTAGTGAAAATTATATCCCT 57.220 33.333 0.00 0.00 0.00 4.20
5221 13661 9.555727 TGCAGTAACTAGTGAAAATTATATCCC 57.444 33.333 0.00 0.00 0.00 3.85
5266 13721 9.780186 AACAGATAATAGGAAGCCATTAGTAAC 57.220 33.333 0.00 0.00 0.00 2.50
5268 13723 9.998106 GAAACAGATAATAGGAAGCCATTAGTA 57.002 33.333 0.00 0.00 0.00 1.82
5269 13724 8.494433 TGAAACAGATAATAGGAAGCCATTAGT 58.506 33.333 0.00 0.00 0.00 2.24
5284 13739 2.418746 GCTCGCCTCCTGAAACAGATAA 60.419 50.000 0.00 0.00 32.44 1.75
5398 13853 1.218047 GCAGATCAGTGCCCGTACA 59.782 57.895 0.00 0.00 37.49 2.90
5404 13859 1.078637 TGAGCAGCAGATCAGTGCC 60.079 57.895 9.59 3.92 45.20 5.01
5416 13871 7.724205 CGCAGTTATTATACATAAGTGAGCAG 58.276 38.462 17.57 8.36 37.19 4.24
5438 13893 2.036958 AGCCACATAATGTAAGCGCA 57.963 45.000 11.47 0.00 34.96 6.09
5464 13919 4.496336 GCCCTGGCTGGCCTGTAG 62.496 72.222 11.69 9.79 46.11 2.74
5551 14006 1.181786 AGCCTGAGAAGAGAACCTCG 58.818 55.000 0.00 0.00 35.36 4.63
5561 14017 1.275666 TCGGATTCCAAGCCTGAGAA 58.724 50.000 3.09 0.00 30.63 2.87
5657 14148 1.937278 TACAACCGCGTTTGTCTCAA 58.063 45.000 25.66 5.40 40.29 3.02
5658 14149 2.157834 ATACAACCGCGTTTGTCTCA 57.842 45.000 25.66 9.17 40.29 3.27
5659 14150 4.852609 ATAATACAACCGCGTTTGTCTC 57.147 40.909 25.66 0.00 40.29 3.36
5660 14151 5.616488 AAATAATACAACCGCGTTTGTCT 57.384 34.783 25.66 13.55 40.29 3.41
5662 14153 8.640291 CAAATAAAATAATACAACCGCGTTTGT 58.360 29.630 25.26 25.26 42.46 2.83
5663 14154 8.640291 ACAAATAAAATAATACAACCGCGTTTG 58.360 29.630 15.31 15.31 0.00 2.93
5664 14155 8.640291 CACAAATAAAATAATACAACCGCGTTT 58.360 29.630 4.92 0.00 0.00 3.60
5665 14156 7.273815 CCACAAATAAAATAATACAACCGCGTT 59.726 33.333 4.92 0.00 0.00 4.84
5666 14157 6.748198 CCACAAATAAAATAATACAACCGCGT 59.252 34.615 4.92 0.00 0.00 6.01
5667 14158 6.291374 GCCACAAATAAAATAATACAACCGCG 60.291 38.462 0.00 0.00 0.00 6.46
5668 14159 6.531948 TGCCACAAATAAAATAATACAACCGC 59.468 34.615 0.00 0.00 0.00 5.68
5669 14160 8.467402 TTGCCACAAATAAAATAATACAACCG 57.533 30.769 0.00 0.00 0.00 4.44
5700 14191 1.380302 GGTCCACTGGTTGATGGCT 59.620 57.895 0.00 0.00 35.81 4.75
5702 14193 1.613437 GTTTGGTCCACTGGTTGATGG 59.387 52.381 0.00 0.00 37.32 3.51
5712 14203 2.224548 ACTAAGAGCCTGTTTGGTCCAC 60.225 50.000 0.00 0.00 38.35 4.02
5741 14232 3.121738 ACACAGTACTTTACACAGGCC 57.878 47.619 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.