Multiple sequence alignment - TraesCS7D01G429300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G429300 chr7D 100.000 2735 0 0 1 2735 549273378 549276112 0.000000e+00 5051.0
1 TraesCS7D01G429300 chr7D 91.953 1280 72 15 783 2037 549134602 549135875 0.000000e+00 1764.0
2 TraesCS7D01G429300 chr7D 95.097 775 29 7 1 767 167549806 167550579 0.000000e+00 1212.0
3 TraesCS7D01G429300 chr7D 89.824 796 68 10 1 786 385394297 385395089 0.000000e+00 1009.0
4 TraesCS7D01G429300 chr7D 85.414 809 92 19 953 1741 548916088 548915286 0.000000e+00 817.0
5 TraesCS7D01G429300 chr7B 93.109 1277 61 11 783 2038 592807749 592809019 0.000000e+00 1845.0
6 TraesCS7D01G429300 chr7B 93.031 1277 62 11 783 2038 592867540 592868810 0.000000e+00 1840.0
7 TraesCS7D01G429300 chr7B 92.792 1207 61 9 783 1972 592718303 592719500 0.000000e+00 1724.0
8 TraesCS7D01G429300 chr7B 85.290 809 96 12 953 1741 592534853 592534048 0.000000e+00 813.0
9 TraesCS7D01G429300 chr7B 94.057 488 27 2 296 783 597152028 597152513 0.000000e+00 739.0
10 TraesCS7D01G429300 chr7B 95.618 251 10 1 1 250 597151781 597152031 4.240000e-108 401.0
11 TraesCS7D01G429300 chr7B 90.625 128 12 0 2029 2156 106475690 106475817 1.300000e-38 171.0
12 TraesCS7D01G429300 chr7A 91.816 1283 63 17 783 2038 634476738 634478005 0.000000e+00 1749.0
13 TraesCS7D01G429300 chr7A 91.601 1274 65 17 783 2029 634463808 634465066 0.000000e+00 1722.0
14 TraesCS7D01G429300 chr7A 92.062 1222 71 11 783 1981 634605322 634606540 0.000000e+00 1696.0
15 TraesCS7D01G429300 chr7A 94.137 307 17 1 2427 2732 620857016 620857322 1.480000e-127 466.0
16 TraesCS7D01G429300 chr7A 92.857 294 21 0 2440 2733 484186427 484186720 7.000000e-116 427.0
17 TraesCS7D01G429300 chr7A 91.753 194 10 3 2204 2396 634610124 634610312 5.810000e-67 265.0
18 TraesCS7D01G429300 chr1D 95.511 646 26 2 48 691 108803747 108804391 0.000000e+00 1029.0
19 TraesCS7D01G429300 chr1D 89.113 744 66 11 1 733 26648484 26649223 0.000000e+00 911.0
20 TraesCS7D01G429300 chr5D 86.962 813 73 9 1 785 356641117 356640310 0.000000e+00 883.0
21 TraesCS7D01G429300 chr5D 96.581 117 4 0 2026 2142 108520877 108520993 7.730000e-46 195.0
22 TraesCS7D01G429300 chr2B 95.492 488 22 0 296 783 250068055 250067568 0.000000e+00 780.0
23 TraesCS7D01G429300 chr2B 92.638 489 34 2 296 783 219887676 219888163 0.000000e+00 702.0
24 TraesCS7D01G429300 chr2B 97.619 252 4 2 1 250 250068303 250068052 5.410000e-117 431.0
25 TraesCS7D01G429300 chr1B 93.595 484 30 1 296 779 580222696 580222214 0.000000e+00 721.0
26 TraesCS7D01G429300 chr1B 93.625 251 9 2 1 250 580222937 580222693 4.300000e-98 368.0
27 TraesCS7D01G429300 chr1B 92.174 115 7 2 2026 2140 206456040 206456152 7.840000e-36 161.0
28 TraesCS7D01G429300 chr1B 93.519 108 7 0 2033 2140 533722579 533722472 7.840000e-36 161.0
29 TraesCS7D01G429300 chr3B 93.388 484 30 2 296 779 688544598 688544117 0.000000e+00 715.0
30 TraesCS7D01G429300 chr3B 93.519 108 7 0 2033 2140 587400497 587400390 7.840000e-36 161.0
31 TraesCS7D01G429300 chr3B 94.872 39 2 0 1068 1106 452739163 452739201 8.180000e-06 62.1
32 TraesCS7D01G429300 chr4D 96.129 310 12 0 2426 2735 43558160 43557851 8.740000e-140 507.0
33 TraesCS7D01G429300 chr4D 91.304 161 13 1 2513 2672 345328870 345328710 4.590000e-53 219.0
34 TraesCS7D01G429300 chr4D 91.736 121 9 1 2020 2140 39410663 39410782 1.680000e-37 167.0
35 TraesCS7D01G429300 chr4D 100.000 28 0 0 2708 2735 345328714 345328687 5.000000e-03 52.8
36 TraesCS7D01G429300 chr3D 96.129 310 12 0 2426 2735 456537674 456537983 8.740000e-140 507.0
37 TraesCS7D01G429300 chr1A 93.478 276 18 0 2460 2735 547882274 547882549 7.050000e-111 411.0
38 TraesCS7D01G429300 chr4B 86.798 356 33 6 1 345 289036951 289037303 4.270000e-103 385.0
39 TraesCS7D01G429300 chr2D 98.148 108 2 0 2034 2141 620509720 620509827 3.600000e-44 189.0
40 TraesCS7D01G429300 chr2A 93.636 110 7 0 2033 2142 34148239 34148348 6.060000e-37 165.0
41 TraesCS7D01G429300 chr4A 92.174 115 7 2 2026 2140 730795161 730795273 7.840000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G429300 chr7D 549273378 549276112 2734 False 5051.0 5051 100.0000 1 2735 1 chr7D.!!$F4 2734
1 TraesCS7D01G429300 chr7D 549134602 549135875 1273 False 1764.0 1764 91.9530 783 2037 1 chr7D.!!$F3 1254
2 TraesCS7D01G429300 chr7D 167549806 167550579 773 False 1212.0 1212 95.0970 1 767 1 chr7D.!!$F1 766
3 TraesCS7D01G429300 chr7D 385394297 385395089 792 False 1009.0 1009 89.8240 1 786 1 chr7D.!!$F2 785
4 TraesCS7D01G429300 chr7D 548915286 548916088 802 True 817.0 817 85.4140 953 1741 1 chr7D.!!$R1 788
5 TraesCS7D01G429300 chr7B 592807749 592809019 1270 False 1845.0 1845 93.1090 783 2038 1 chr7B.!!$F3 1255
6 TraesCS7D01G429300 chr7B 592867540 592868810 1270 False 1840.0 1840 93.0310 783 2038 1 chr7B.!!$F4 1255
7 TraesCS7D01G429300 chr7B 592718303 592719500 1197 False 1724.0 1724 92.7920 783 1972 1 chr7B.!!$F2 1189
8 TraesCS7D01G429300 chr7B 592534048 592534853 805 True 813.0 813 85.2900 953 1741 1 chr7B.!!$R1 788
9 TraesCS7D01G429300 chr7B 597151781 597152513 732 False 570.0 739 94.8375 1 783 2 chr7B.!!$F5 782
10 TraesCS7D01G429300 chr7A 634476738 634478005 1267 False 1749.0 1749 91.8160 783 2038 1 chr7A.!!$F4 1255
11 TraesCS7D01G429300 chr7A 634463808 634465066 1258 False 1722.0 1722 91.6010 783 2029 1 chr7A.!!$F3 1246
12 TraesCS7D01G429300 chr7A 634605322 634610312 4990 False 980.5 1696 91.9075 783 2396 2 chr7A.!!$F5 1613
13 TraesCS7D01G429300 chr1D 108803747 108804391 644 False 1029.0 1029 95.5110 48 691 1 chr1D.!!$F2 643
14 TraesCS7D01G429300 chr1D 26648484 26649223 739 False 911.0 911 89.1130 1 733 1 chr1D.!!$F1 732
15 TraesCS7D01G429300 chr5D 356640310 356641117 807 True 883.0 883 86.9620 1 785 1 chr5D.!!$R1 784
16 TraesCS7D01G429300 chr2B 250067568 250068303 735 True 605.5 780 96.5555 1 783 2 chr2B.!!$R1 782
17 TraesCS7D01G429300 chr1B 580222214 580222937 723 True 544.5 721 93.6100 1 779 2 chr1B.!!$R2 778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 383 0.029035 GCAATCTTCATGAGGCAGCG 59.971 55.0 0.0 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 2241 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.378551 TGACATACCACAGTATTTTGAAGTATC 57.621 33.333 0.00 0.00 37.06 2.24
87 89 5.916320 TGGTAGTGTTGTATATATTGACGCG 59.084 40.000 3.53 3.53 0.00 6.01
283 290 0.175989 CCTTCCTCTCAGTTACGGCC 59.824 60.000 0.00 0.00 0.00 6.13
374 383 0.029035 GCAATCTTCATGAGGCAGCG 59.971 55.000 0.00 0.00 0.00 5.18
380 389 3.473647 CATGAGGCAGCGGGAGGA 61.474 66.667 0.00 0.00 0.00 3.71
502 518 4.897076 TCTTTATCTATCCACGGCAACCTA 59.103 41.667 0.00 0.00 0.00 3.08
553 572 4.760047 CGGTGGCCTGGGAACGAG 62.760 72.222 3.32 0.00 0.00 4.18
597 616 3.609103 TTTTTCGTCTGCTCTGCTTTC 57.391 42.857 0.00 0.00 0.00 2.62
626 648 8.637196 AAAGAGGTCTAGGGTTCTTTTTATTG 57.363 34.615 9.18 0.00 36.72 1.90
652 674 7.094634 GGACAGAGAAAATACTGCATTTTGAGA 60.095 37.037 3.41 0.00 44.98 3.27
698 720 3.518634 TTTTTGTGGAGACCAAACAGC 57.481 42.857 0.00 0.00 34.18 4.40
699 721 2.435372 TTTGTGGAGACCAAACAGCT 57.565 45.000 0.00 0.00 34.18 4.24
700 722 1.967319 TTGTGGAGACCAAACAGCTC 58.033 50.000 0.00 0.00 34.18 4.09
701 723 0.836606 TGTGGAGACCAAACAGCTCA 59.163 50.000 0.00 0.00 34.18 4.26
702 724 1.211703 TGTGGAGACCAAACAGCTCAA 59.788 47.619 0.00 0.00 34.18 3.02
703 725 2.297701 GTGGAGACCAAACAGCTCAAA 58.702 47.619 0.00 0.00 34.18 2.69
704 726 2.291741 GTGGAGACCAAACAGCTCAAAG 59.708 50.000 0.00 0.00 34.18 2.77
705 727 2.092429 TGGAGACCAAACAGCTCAAAGT 60.092 45.455 0.00 0.00 0.00 2.66
706 728 3.135712 TGGAGACCAAACAGCTCAAAGTA 59.864 43.478 0.00 0.00 0.00 2.24
707 729 4.134563 GGAGACCAAACAGCTCAAAGTAA 58.865 43.478 0.00 0.00 0.00 2.24
708 730 4.762251 GGAGACCAAACAGCTCAAAGTAAT 59.238 41.667 0.00 0.00 0.00 1.89
709 731 5.241728 GGAGACCAAACAGCTCAAAGTAATT 59.758 40.000 0.00 0.00 0.00 1.40
710 732 6.430000 GGAGACCAAACAGCTCAAAGTAATTA 59.570 38.462 0.00 0.00 0.00 1.40
711 733 7.040686 GGAGACCAAACAGCTCAAAGTAATTAA 60.041 37.037 0.00 0.00 0.00 1.40
712 734 8.232913 AGACCAAACAGCTCAAAGTAATTAAA 57.767 30.769 0.00 0.00 0.00 1.52
713 735 8.691797 AGACCAAACAGCTCAAAGTAATTAAAA 58.308 29.630 0.00 0.00 0.00 1.52
714 736 8.642908 ACCAAACAGCTCAAAGTAATTAAAAC 57.357 30.769 0.00 0.00 0.00 2.43
715 737 7.709182 ACCAAACAGCTCAAAGTAATTAAAACC 59.291 33.333 0.00 0.00 0.00 3.27
716 738 7.708752 CCAAACAGCTCAAAGTAATTAAAACCA 59.291 33.333 0.00 0.00 0.00 3.67
717 739 9.260002 CAAACAGCTCAAAGTAATTAAAACCAT 57.740 29.630 0.00 0.00 0.00 3.55
720 742 9.297037 ACAGCTCAAAGTAATTAAAACCATAGT 57.703 29.630 0.00 0.00 0.00 2.12
766 788 9.897744 TTCACAAAATACTTAGAAAATGCAGAG 57.102 29.630 0.00 0.00 0.00 3.35
767 789 8.023128 TCACAAAATACTTAGAAAATGCAGAGC 58.977 33.333 0.00 0.00 0.00 4.09
768 790 8.025445 CACAAAATACTTAGAAAATGCAGAGCT 58.975 33.333 0.00 0.00 0.00 4.09
769 791 9.231297 ACAAAATACTTAGAAAATGCAGAGCTA 57.769 29.630 0.00 0.00 0.00 3.32
772 794 9.618890 AAATACTTAGAAAATGCAGAGCTATCA 57.381 29.630 0.00 0.00 0.00 2.15
773 795 9.618890 AATACTTAGAAAATGCAGAGCTATCAA 57.381 29.630 0.00 0.00 0.00 2.57
774 796 7.928307 ACTTAGAAAATGCAGAGCTATCAAA 57.072 32.000 0.00 0.00 0.00 2.69
775 797 7.756558 ACTTAGAAAATGCAGAGCTATCAAAC 58.243 34.615 0.00 0.00 0.00 2.93
776 798 5.227238 AGAAAATGCAGAGCTATCAAACG 57.773 39.130 0.00 0.00 0.00 3.60
777 799 4.095483 AGAAAATGCAGAGCTATCAAACGG 59.905 41.667 0.00 0.00 0.00 4.44
778 800 1.959042 ATGCAGAGCTATCAAACGGG 58.041 50.000 0.00 0.00 0.00 5.28
779 801 0.107703 TGCAGAGCTATCAAACGGGG 60.108 55.000 0.00 0.00 0.00 5.73
780 802 1.440145 GCAGAGCTATCAAACGGGGC 61.440 60.000 0.00 0.00 0.00 5.80
781 803 0.815615 CAGAGCTATCAAACGGGGCC 60.816 60.000 0.00 0.00 0.00 5.80
994 1037 2.154462 CATTTTGCTGGTCGAGAAGGT 58.846 47.619 0.00 0.00 0.00 3.50
1017 1064 3.121030 ATGGCTGCTGCGACGTTC 61.121 61.111 9.65 0.00 40.82 3.95
1099 1146 0.539669 TCTCCAGGACTTCTGCGTCA 60.540 55.000 0.00 0.00 42.05 4.35
1173 1235 4.774124 TCCTCAGTTTCCATGTGATCATC 58.226 43.478 0.00 0.00 31.15 2.92
1174 1236 4.225717 TCCTCAGTTTCCATGTGATCATCA 59.774 41.667 0.00 0.00 31.15 3.07
1175 1237 5.104235 TCCTCAGTTTCCATGTGATCATCAT 60.104 40.000 0.00 1.73 31.15 2.45
1176 1238 5.238868 CCTCAGTTTCCATGTGATCATCATC 59.761 44.000 0.00 0.00 31.15 2.92
1216 1287 2.029073 CAGTGCACGAGAACGGGT 59.971 61.111 12.01 0.00 45.51 5.28
1221 1292 3.047877 CACGAGAACGGGTTGGCC 61.048 66.667 0.00 0.00 44.46 5.36
1570 1644 1.821759 CTCCACAACAACGGCACCA 60.822 57.895 0.00 0.00 0.00 4.17
1766 1846 1.425428 CGTGCTTTTCCCGATCTGC 59.575 57.895 0.00 0.00 0.00 4.26
1784 1864 6.195983 CGATCTGCATTCTTTGTATTTTCTGC 59.804 38.462 0.00 0.00 0.00 4.26
1900 1984 4.472286 ACAAGGCGTTACGATTTGATTTG 58.528 39.130 21.66 11.38 0.00 2.32
1918 2008 8.879342 TTGATTTGATTTTTGAACACCGTTAT 57.121 26.923 0.00 0.00 0.00 1.89
1926 2016 7.687005 TTTTTGAACACCGTTATGATTTGAC 57.313 32.000 0.00 0.00 0.00 3.18
1936 2026 6.017770 ACCGTTATGATTTGACTCGAACAAAA 60.018 34.615 17.15 5.35 39.95 2.44
1939 2029 9.536558 CGTTATGATTTGACTCGAACAAAATTA 57.463 29.630 17.15 7.19 39.95 1.40
2045 2169 9.857957 CTTTAGAAATTATATACTCCCTCCGTC 57.142 37.037 0.00 0.00 0.00 4.79
2046 2170 6.854091 AGAAATTATATACTCCCTCCGTCC 57.146 41.667 0.00 0.00 0.00 4.79
2047 2171 5.418209 AGAAATTATATACTCCCTCCGTCCG 59.582 44.000 0.00 0.00 0.00 4.79
2048 2172 2.795231 TATATACTCCCTCCGTCCGG 57.205 55.000 0.00 0.00 0.00 5.14
2049 2173 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
2050 2174 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
2051 2175 0.187851 ATACTCCCTCCGTCCGGAAT 59.812 55.000 5.23 0.00 44.66 3.01
2052 2176 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
2053 2177 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
2054 2178 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
2055 2179 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
2056 2180 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
2057 2181 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2058 2182 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2059 2183 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2060 2184 1.894466 TCCGTCCGGAATTACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2061 2185 2.498481 TCCGTCCGGAATTACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2062 2186 3.055675 TCCGTCCGGAATTACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
2063 2187 4.160065 TCCGTCCGGAATTACTTGTCATTA 59.840 41.667 5.23 0.00 42.05 1.90
2064 2188 4.871557 CCGTCCGGAATTACTTGTCATTAA 59.128 41.667 5.23 0.00 37.50 1.40
2065 2189 5.352016 CCGTCCGGAATTACTTGTCATTAAA 59.648 40.000 5.23 0.00 37.50 1.52
2066 2190 6.128227 CCGTCCGGAATTACTTGTCATTAAAA 60.128 38.462 5.23 0.00 37.50 1.52
2067 2191 7.414762 CCGTCCGGAATTACTTGTCATTAAAAT 60.415 37.037 5.23 0.00 37.50 1.82
2068 2192 7.428183 CGTCCGGAATTACTTGTCATTAAAATG 59.572 37.037 5.23 0.00 37.75 2.32
2069 2193 7.700656 GTCCGGAATTACTTGTCATTAAAATGG 59.299 37.037 5.23 0.00 37.03 3.16
2070 2194 7.612244 TCCGGAATTACTTGTCATTAAAATGGA 59.388 33.333 0.00 0.00 37.03 3.41
2071 2195 8.413229 CCGGAATTACTTGTCATTAAAATGGAT 58.587 33.333 0.00 0.00 37.03 3.41
2072 2196 9.236691 CGGAATTACTTGTCATTAAAATGGATG 57.763 33.333 3.00 0.00 37.03 3.51
2110 2234 7.504926 AAAATACCTAGATACACCCAGTTCA 57.495 36.000 0.00 0.00 0.00 3.18
2111 2235 7.504926 AAATACCTAGATACACCCAGTTCAA 57.495 36.000 0.00 0.00 0.00 2.69
2112 2236 7.691993 AATACCTAGATACACCCAGTTCAAT 57.308 36.000 0.00 0.00 0.00 2.57
2113 2237 5.359194 ACCTAGATACACCCAGTTCAATG 57.641 43.478 0.00 0.00 0.00 2.82
2114 2238 5.030147 ACCTAGATACACCCAGTTCAATGA 58.970 41.667 0.00 0.00 0.00 2.57
2115 2239 5.104900 ACCTAGATACACCCAGTTCAATGAC 60.105 44.000 0.00 0.00 0.00 3.06
2116 2240 4.908601 AGATACACCCAGTTCAATGACA 57.091 40.909 0.00 0.00 0.00 3.58
2117 2241 5.241403 AGATACACCCAGTTCAATGACAA 57.759 39.130 0.00 0.00 0.00 3.18
2118 2242 5.248640 AGATACACCCAGTTCAATGACAAG 58.751 41.667 0.00 0.00 0.00 3.16
2119 2243 3.297134 ACACCCAGTTCAATGACAAGT 57.703 42.857 0.00 0.00 0.00 3.16
2120 2244 4.431416 ACACCCAGTTCAATGACAAGTA 57.569 40.909 0.00 0.00 0.00 2.24
2121 2245 4.985538 ACACCCAGTTCAATGACAAGTAT 58.014 39.130 0.00 0.00 0.00 2.12
2122 2246 5.385198 ACACCCAGTTCAATGACAAGTATT 58.615 37.500 0.00 0.00 0.00 1.89
2123 2247 5.833131 ACACCCAGTTCAATGACAAGTATTT 59.167 36.000 0.00 0.00 0.00 1.40
2124 2248 6.016276 ACACCCAGTTCAATGACAAGTATTTC 60.016 38.462 0.00 0.00 0.00 2.17
2125 2249 5.476945 ACCCAGTTCAATGACAAGTATTTCC 59.523 40.000 0.00 0.00 0.00 3.13
2126 2250 5.391950 CCCAGTTCAATGACAAGTATTTCCG 60.392 44.000 0.00 0.00 0.00 4.30
2127 2251 5.391950 CCAGTTCAATGACAAGTATTTCCGG 60.392 44.000 0.00 0.00 0.00 5.14
2128 2252 5.411361 CAGTTCAATGACAAGTATTTCCGGA 59.589 40.000 0.00 0.00 0.00 5.14
2129 2253 5.411669 AGTTCAATGACAAGTATTTCCGGAC 59.588 40.000 1.83 0.00 0.00 4.79
2130 2254 3.930229 TCAATGACAAGTATTTCCGGACG 59.070 43.478 1.83 0.00 0.00 4.79
2131 2255 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2132 2256 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2133 2257 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2134 2258 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2135 2259 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2136 2260 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2137 2261 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2138 2262 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2139 2263 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2140 2264 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
2141 2265 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
2142 2266 1.823041 CCGGACGGAGGGAGTACTC 60.823 68.421 14.87 14.87 37.50 2.59
2143 2267 1.077930 CGGACGGAGGGAGTACTCA 60.078 63.158 23.91 0.00 39.27 3.41
2144 2268 0.465824 CGGACGGAGGGAGTACTCAT 60.466 60.000 23.91 12.09 39.27 2.90
2145 2269 1.033574 GGACGGAGGGAGTACTCATG 58.966 60.000 23.91 10.61 39.27 3.07
2146 2270 1.409802 GGACGGAGGGAGTACTCATGA 60.410 57.143 23.91 0.00 39.27 3.07
2221 5780 9.573133 GGAGTACTTAACAATCCATTTTCATTG 57.427 33.333 0.00 0.00 36.28 2.82
2230 5789 7.641760 ACAATCCATTTTCATTGTCTTTTTGC 58.358 30.769 0.00 0.00 38.59 3.68
2231 5790 5.903764 TCCATTTTCATTGTCTTTTTGCG 57.096 34.783 0.00 0.00 0.00 4.85
2245 5804 9.535878 TTGTCTTTTTGCGGTAAAATCTATTTT 57.464 25.926 4.85 6.00 42.21 1.82
2254 5813 9.352784 TGCGGTAAAATCTATTTTCATTTCTTG 57.647 29.630 4.02 0.00 40.24 3.02
2265 5824 4.829064 TTCATTTCTTGTTCCGGTGAAG 57.171 40.909 0.00 2.30 0.00 3.02
2399 5958 9.144747 CTCATATTCAAGTTCATATAACTCCCG 57.855 37.037 0.00 0.00 0.00 5.14
2400 5959 8.094548 TCATATTCAAGTTCATATAACTCCCGG 58.905 37.037 0.00 0.00 0.00 5.73
2401 5960 5.687166 TTCAAGTTCATATAACTCCCGGT 57.313 39.130 0.00 0.00 0.00 5.28
2402 5961 5.272283 TCAAGTTCATATAACTCCCGGTC 57.728 43.478 0.00 0.00 0.00 4.79
2403 5962 4.712829 TCAAGTTCATATAACTCCCGGTCA 59.287 41.667 0.00 0.00 0.00 4.02
2404 5963 5.188163 TCAAGTTCATATAACTCCCGGTCAA 59.812 40.000 0.00 0.00 0.00 3.18
2405 5964 5.019785 AGTTCATATAACTCCCGGTCAAC 57.980 43.478 0.00 0.00 0.00 3.18
2406 5965 4.124970 GTTCATATAACTCCCGGTCAACC 58.875 47.826 0.00 0.00 0.00 3.77
2407 5966 2.701951 TCATATAACTCCCGGTCAACCC 59.298 50.000 0.00 0.00 0.00 4.11
2408 5967 2.250921 TATAACTCCCGGTCAACCCA 57.749 50.000 0.00 0.00 0.00 4.51
2409 5968 0.616891 ATAACTCCCGGTCAACCCAC 59.383 55.000 0.00 0.00 0.00 4.61
2410 5969 1.482748 TAACTCCCGGTCAACCCACC 61.483 60.000 0.00 0.00 0.00 4.61
2411 5970 2.928396 CTCCCGGTCAACCCACCT 60.928 66.667 0.00 0.00 33.77 4.00
2412 5971 2.926242 TCCCGGTCAACCCACCTC 60.926 66.667 0.00 0.00 33.77 3.85
2413 5972 3.246112 CCCGGTCAACCCACCTCA 61.246 66.667 0.00 0.00 33.77 3.86
2414 5973 2.032071 CCGGTCAACCCACCTCAC 59.968 66.667 0.00 0.00 33.77 3.51
2415 5974 2.516888 CCGGTCAACCCACCTCACT 61.517 63.158 0.00 0.00 33.77 3.41
2416 5975 1.301716 CGGTCAACCCACCTCACTG 60.302 63.158 0.00 0.00 33.77 3.66
2417 5976 1.073199 GGTCAACCCACCTCACTGG 59.927 63.158 0.00 0.00 42.93 4.00
2418 5977 1.600916 GTCAACCCACCTCACTGGC 60.601 63.158 0.00 0.00 40.22 4.85
2419 5978 2.075566 TCAACCCACCTCACTGGCA 61.076 57.895 0.00 0.00 40.22 4.92
2420 5979 1.075482 CAACCCACCTCACTGGCAT 59.925 57.895 0.00 0.00 40.22 4.40
2421 5980 0.540365 CAACCCACCTCACTGGCATT 60.540 55.000 0.00 0.00 40.22 3.56
2422 5981 0.540365 AACCCACCTCACTGGCATTG 60.540 55.000 0.00 0.00 40.22 2.82
2423 5982 1.379916 CCCACCTCACTGGCATTGA 59.620 57.895 7.36 7.36 40.22 2.57
2424 5983 0.679002 CCCACCTCACTGGCATTGAG 60.679 60.000 23.61 23.61 40.30 3.02
2429 5988 1.735386 CTCACTGGCATTGAGGAGTG 58.265 55.000 23.04 10.19 37.44 3.51
2430 5989 1.277273 CTCACTGGCATTGAGGAGTGA 59.723 52.381 23.04 13.60 41.93 3.41
2431 5990 1.002430 TCACTGGCATTGAGGAGTGAC 59.998 52.381 3.10 0.00 39.86 3.67
2432 5991 1.002888 CACTGGCATTGAGGAGTGACT 59.997 52.381 0.00 0.00 38.49 3.41
2433 5992 1.701847 ACTGGCATTGAGGAGTGACTT 59.298 47.619 0.00 0.00 0.00 3.01
2434 5993 2.082231 CTGGCATTGAGGAGTGACTTG 58.918 52.381 0.00 0.00 0.00 3.16
2435 5994 1.271543 TGGCATTGAGGAGTGACTTGG 60.272 52.381 0.00 0.00 0.00 3.61
2436 5995 1.003580 GGCATTGAGGAGTGACTTGGA 59.996 52.381 0.00 0.00 0.00 3.53
2437 5996 2.079925 GCATTGAGGAGTGACTTGGAC 58.920 52.381 0.00 0.00 0.00 4.02
2438 5997 2.341257 CATTGAGGAGTGACTTGGACG 58.659 52.381 0.00 0.00 0.00 4.79
2439 5998 0.033504 TTGAGGAGTGACTTGGACGC 59.966 55.000 0.00 0.00 0.00 5.19
2440 5999 0.827925 TGAGGAGTGACTTGGACGCT 60.828 55.000 0.00 0.00 0.00 5.07
2441 6000 0.109039 GAGGAGTGACTTGGACGCTC 60.109 60.000 0.00 0.00 42.08 5.03
2442 6001 4.580835 GAGTGACTTGGACGCTCC 57.419 61.111 0.00 0.00 38.47 4.70
2443 6002 1.079750 GAGTGACTTGGACGCTCCC 60.080 63.158 0.00 0.00 38.47 4.30
2444 6003 2.047179 GTGACTTGGACGCTCCCC 60.047 66.667 2.23 0.00 35.03 4.81
2445 6004 2.203788 TGACTTGGACGCTCCCCT 60.204 61.111 2.23 0.00 35.03 4.79
2446 6005 2.283529 TGACTTGGACGCTCCCCTC 61.284 63.158 2.23 0.00 35.03 4.30
2447 6006 1.985116 GACTTGGACGCTCCCCTCT 60.985 63.158 2.23 0.00 35.03 3.69
2448 6007 1.950973 GACTTGGACGCTCCCCTCTC 61.951 65.000 2.23 0.00 35.03 3.20
2449 6008 1.684049 CTTGGACGCTCCCCTCTCT 60.684 63.158 2.23 0.00 35.03 3.10
2450 6009 1.671901 CTTGGACGCTCCCCTCTCTC 61.672 65.000 2.23 0.00 35.03 3.20
2451 6010 2.835895 GGACGCTCCCCTCTCTCC 60.836 72.222 0.00 0.00 0.00 3.71
2452 6011 2.835895 GACGCTCCCCTCTCTCCC 60.836 72.222 0.00 0.00 0.00 4.30
2453 6012 4.824515 ACGCTCCCCTCTCTCCCG 62.825 72.222 0.00 0.00 0.00 5.14
2454 6013 4.824515 CGCTCCCCTCTCTCCCGT 62.825 72.222 0.00 0.00 0.00 5.28
2455 6014 2.835895 GCTCCCCTCTCTCCCGTC 60.836 72.222 0.00 0.00 0.00 4.79
2456 6015 2.684104 CTCCCCTCTCTCCCGTCA 59.316 66.667 0.00 0.00 0.00 4.35
2457 6016 1.755008 CTCCCCTCTCTCCCGTCAC 60.755 68.421 0.00 0.00 0.00 3.67
2458 6017 2.218115 CTCCCCTCTCTCCCGTCACT 62.218 65.000 0.00 0.00 0.00 3.41
2459 6018 2.055042 CCCCTCTCTCCCGTCACTG 61.055 68.421 0.00 0.00 0.00 3.66
2460 6019 1.304547 CCCTCTCTCCCGTCACTGT 60.305 63.158 0.00 0.00 0.00 3.55
2461 6020 0.034380 CCCTCTCTCCCGTCACTGTA 60.034 60.000 0.00 0.00 0.00 2.74
2462 6021 1.384525 CCTCTCTCCCGTCACTGTAG 58.615 60.000 0.00 0.00 0.00 2.74
2463 6022 0.736053 CTCTCTCCCGTCACTGTAGC 59.264 60.000 0.00 0.00 0.00 3.58
2464 6023 1.025113 TCTCTCCCGTCACTGTAGCG 61.025 60.000 0.00 0.00 0.00 4.26
2465 6024 1.002990 TCTCCCGTCACTGTAGCGA 60.003 57.895 5.03 0.00 0.00 4.93
2466 6025 1.025113 TCTCCCGTCACTGTAGCGAG 61.025 60.000 5.03 0.00 0.00 5.03
2467 6026 1.002990 TCCCGTCACTGTAGCGAGA 60.003 57.895 5.03 0.00 0.00 4.04
2468 6027 1.025113 TCCCGTCACTGTAGCGAGAG 61.025 60.000 5.03 0.00 0.00 3.20
2469 6028 1.429825 CCGTCACTGTAGCGAGAGG 59.570 63.158 0.00 0.00 0.00 3.69
2470 6029 1.226435 CGTCACTGTAGCGAGAGGC 60.226 63.158 0.00 0.00 44.05 4.70
2480 6039 3.050703 GCGAGAGGCGATTTTCTGA 57.949 52.632 0.00 0.00 44.57 3.27
2481 6040 0.926846 GCGAGAGGCGATTTTCTGAG 59.073 55.000 0.00 0.00 44.57 3.35
2482 6041 1.469940 GCGAGAGGCGATTTTCTGAGA 60.470 52.381 0.00 0.00 44.57 3.27
2483 6042 2.881074 CGAGAGGCGATTTTCTGAGAA 58.119 47.619 0.00 0.00 44.57 2.87
2484 6043 2.600867 CGAGAGGCGATTTTCTGAGAAC 59.399 50.000 0.00 0.00 44.57 3.01
2485 6044 3.674682 CGAGAGGCGATTTTCTGAGAACT 60.675 47.826 0.00 0.00 44.57 3.01
2486 6045 3.855858 AGAGGCGATTTTCTGAGAACTC 58.144 45.455 0.00 0.00 0.00 3.01
2487 6046 2.933260 GAGGCGATTTTCTGAGAACTCC 59.067 50.000 0.00 0.00 0.00 3.85
2488 6047 2.010497 GGCGATTTTCTGAGAACTCCC 58.990 52.381 0.00 0.00 0.00 4.30
2489 6048 1.661112 GCGATTTTCTGAGAACTCCCG 59.339 52.381 0.00 0.00 0.00 5.14
2490 6049 2.271800 CGATTTTCTGAGAACTCCCGG 58.728 52.381 0.00 0.00 0.00 5.73
2491 6050 2.353803 CGATTTTCTGAGAACTCCCGGT 60.354 50.000 0.00 0.00 0.00 5.28
2492 6051 2.833631 TTTTCTGAGAACTCCCGGTC 57.166 50.000 0.00 0.00 0.00 4.79
2493 6052 1.712056 TTTCTGAGAACTCCCGGTCA 58.288 50.000 0.00 0.00 0.00 4.02
2494 6053 1.712056 TTCTGAGAACTCCCGGTCAA 58.288 50.000 0.00 0.00 0.00 3.18
2495 6054 0.966920 TCTGAGAACTCCCGGTCAAC 59.033 55.000 0.00 0.00 0.00 3.18
2496 6055 0.037232 CTGAGAACTCCCGGTCAACC 60.037 60.000 0.00 0.00 0.00 3.77
2497 6056 1.295746 GAGAACTCCCGGTCAACCC 59.704 63.158 0.00 0.00 0.00 4.11
2498 6057 1.460689 AGAACTCCCGGTCAACCCA 60.461 57.895 0.00 0.00 0.00 4.51
2499 6058 1.302271 GAACTCCCGGTCAACCCAC 60.302 63.158 0.00 0.00 0.00 4.61
2500 6059 2.743126 GAACTCCCGGTCAACCCACC 62.743 65.000 0.00 0.00 0.00 4.61
2501 6060 2.928396 CTCCCGGTCAACCCACCT 60.928 66.667 0.00 0.00 33.77 4.00
2502 6061 2.926242 TCCCGGTCAACCCACCTC 60.926 66.667 0.00 0.00 33.77 3.85
2503 6062 3.246112 CCCGGTCAACCCACCTCA 61.246 66.667 0.00 0.00 33.77 3.86
2504 6063 2.032071 CCGGTCAACCCACCTCAC 59.968 66.667 0.00 0.00 33.77 3.51
2505 6064 2.516888 CCGGTCAACCCACCTCACT 61.517 63.158 0.00 0.00 33.77 3.41
2506 6065 1.004918 CGGTCAACCCACCTCACTC 60.005 63.158 0.00 0.00 33.77 3.51
2507 6066 1.004918 GGTCAACCCACCTCACTCG 60.005 63.158 0.00 0.00 33.08 4.18
2508 6067 1.668151 GTCAACCCACCTCACTCGC 60.668 63.158 0.00 0.00 0.00 5.03
2509 6068 2.358737 CAACCCACCTCACTCGCC 60.359 66.667 0.00 0.00 0.00 5.54
2510 6069 4.003788 AACCCACCTCACTCGCCG 62.004 66.667 0.00 0.00 0.00 6.46
2525 6084 4.008035 CCGGCGATCTACGGTTTC 57.992 61.111 9.30 0.00 44.85 2.78
2526 6085 1.590792 CCGGCGATCTACGGTTTCC 60.591 63.158 9.30 0.00 44.85 3.13
2527 6086 1.436336 CGGCGATCTACGGTTTCCT 59.564 57.895 0.00 0.00 42.83 3.36
2528 6087 0.594284 CGGCGATCTACGGTTTCCTC 60.594 60.000 0.00 0.00 42.83 3.71
2529 6088 0.249363 GGCGATCTACGGTTTCCTCC 60.249 60.000 0.00 0.00 42.83 4.30
2536 6095 4.814294 CGGTTTCCTCCGCCTCCG 62.814 72.222 0.00 0.00 43.96 4.63
2561 6120 3.771160 CTCCAGCGGCGGTAGGTT 61.771 66.667 12.74 0.00 0.00 3.50
2562 6121 4.077184 TCCAGCGGCGGTAGGTTG 62.077 66.667 12.74 0.00 0.00 3.77
2567 6126 3.708544 CGGCGGTAGGTTGGGGAA 61.709 66.667 0.00 0.00 0.00 3.97
2568 6127 2.758434 GGCGGTAGGTTGGGGAAA 59.242 61.111 0.00 0.00 0.00 3.13
2569 6128 1.676635 GGCGGTAGGTTGGGGAAAC 60.677 63.158 0.00 0.00 38.12 2.78
2580 6139 4.934989 GGGAAACCGTGGCTCTAG 57.065 61.111 0.00 0.00 43.64 2.43
2581 6140 1.221021 GGGAAACCGTGGCTCTAGG 59.779 63.158 0.00 0.00 43.64 3.02
2582 6141 1.449778 GGAAACCGTGGCTCTAGGC 60.450 63.158 0.00 0.00 41.50 3.93
2583 6142 1.597461 GAAACCGTGGCTCTAGGCT 59.403 57.895 5.07 0.00 41.69 4.58
2584 6143 0.036294 GAAACCGTGGCTCTAGGCTT 60.036 55.000 5.07 0.00 41.69 4.35
2585 6144 0.321653 AAACCGTGGCTCTAGGCTTG 60.322 55.000 5.07 0.00 41.69 4.01
2586 6145 1.481056 AACCGTGGCTCTAGGCTTGT 61.481 55.000 5.07 0.00 41.69 3.16
2587 6146 0.613853 ACCGTGGCTCTAGGCTTGTA 60.614 55.000 5.07 0.00 41.69 2.41
2588 6147 0.179108 CCGTGGCTCTAGGCTTGTAC 60.179 60.000 5.07 0.00 41.69 2.90
2589 6148 0.530744 CGTGGCTCTAGGCTTGTACA 59.469 55.000 5.07 0.00 41.69 2.90
2590 6149 1.137086 CGTGGCTCTAGGCTTGTACAT 59.863 52.381 0.00 0.00 41.69 2.29
2591 6150 2.361119 CGTGGCTCTAGGCTTGTACATA 59.639 50.000 0.00 0.00 41.69 2.29
2592 6151 3.551046 CGTGGCTCTAGGCTTGTACATAG 60.551 52.174 0.00 0.00 41.69 2.23
2593 6152 2.365617 TGGCTCTAGGCTTGTACATAGC 59.634 50.000 16.84 16.84 41.69 2.97
2594 6153 2.608261 GGCTCTAGGCTTGTACATAGCG 60.608 54.545 17.85 5.71 39.54 4.26
2595 6154 2.034812 GCTCTAGGCTTGTACATAGCGT 59.965 50.000 20.73 20.73 39.54 5.07
2596 6155 3.252701 GCTCTAGGCTTGTACATAGCGTA 59.747 47.826 20.74 20.74 39.54 4.42
2598 6157 4.162096 CTAGGCTTGTACATAGCGTAGG 57.838 50.000 28.76 19.65 45.98 3.18
2599 6158 1.687123 AGGCTTGTACATAGCGTAGGG 59.313 52.381 17.64 0.00 39.54 3.53
2600 6159 1.499049 GCTTGTACATAGCGTAGGGC 58.501 55.000 12.24 0.00 44.05 5.19
2609 6168 2.504519 GCGTAGGGCTTGGTAGGG 59.495 66.667 0.00 0.00 39.11 3.53
2610 6169 2.504519 CGTAGGGCTTGGTAGGGC 59.495 66.667 0.00 0.00 0.00 5.19
2640 6199 3.234349 CGCCATGGAGGTGGAGAT 58.766 61.111 18.40 0.00 44.45 2.75
2641 6200 1.227764 CGCCATGGAGGTGGAGATG 60.228 63.158 18.40 0.00 44.45 2.90
2642 6201 1.150081 GCCATGGAGGTGGAGATGG 59.850 63.158 18.40 0.00 42.02 3.51
2643 6202 1.150081 CCATGGAGGTGGAGATGGC 59.850 63.158 5.56 0.00 42.02 4.40
2644 6203 1.227764 CATGGAGGTGGAGATGGCG 60.228 63.158 0.00 0.00 0.00 5.69
2645 6204 1.690633 ATGGAGGTGGAGATGGCGT 60.691 57.895 0.00 0.00 0.00 5.68
2646 6205 1.274703 ATGGAGGTGGAGATGGCGTT 61.275 55.000 0.00 0.00 0.00 4.84
2647 6206 0.616395 TGGAGGTGGAGATGGCGTTA 60.616 55.000 0.00 0.00 0.00 3.18
2648 6207 0.105039 GGAGGTGGAGATGGCGTTAG 59.895 60.000 0.00 0.00 0.00 2.34
2649 6208 0.824759 GAGGTGGAGATGGCGTTAGT 59.175 55.000 0.00 0.00 0.00 2.24
2650 6209 0.537188 AGGTGGAGATGGCGTTAGTG 59.463 55.000 0.00 0.00 0.00 2.74
2651 6210 1.090052 GGTGGAGATGGCGTTAGTGC 61.090 60.000 0.00 0.00 0.00 4.40
2652 6211 1.153647 TGGAGATGGCGTTAGTGCG 60.154 57.895 0.00 0.00 35.06 5.34
2653 6212 1.883084 GGAGATGGCGTTAGTGCGG 60.883 63.158 0.00 0.00 35.06 5.69
2654 6213 1.153628 GAGATGGCGTTAGTGCGGT 60.154 57.895 0.00 0.00 35.06 5.68
2655 6214 1.421410 GAGATGGCGTTAGTGCGGTG 61.421 60.000 0.00 0.00 35.06 4.94
2656 6215 1.740296 GATGGCGTTAGTGCGGTGT 60.740 57.895 0.00 0.00 35.06 4.16
2657 6216 1.296056 GATGGCGTTAGTGCGGTGTT 61.296 55.000 0.00 0.00 35.06 3.32
2658 6217 0.887387 ATGGCGTTAGTGCGGTGTTT 60.887 50.000 0.00 0.00 35.06 2.83
2659 6218 1.082366 GGCGTTAGTGCGGTGTTTG 60.082 57.895 0.00 0.00 35.06 2.93
2660 6219 1.644913 GCGTTAGTGCGGTGTTTGT 59.355 52.632 0.00 0.00 0.00 2.83
2661 6220 0.383860 GCGTTAGTGCGGTGTTTGTC 60.384 55.000 0.00 0.00 0.00 3.18
2662 6221 0.111442 CGTTAGTGCGGTGTTTGTCG 60.111 55.000 0.00 0.00 0.00 4.35
2663 6222 0.932399 GTTAGTGCGGTGTTTGTCGT 59.068 50.000 0.00 0.00 0.00 4.34
2664 6223 1.071041 GTTAGTGCGGTGTTTGTCGTC 60.071 52.381 0.00 0.00 0.00 4.20
2665 6224 0.935831 TAGTGCGGTGTTTGTCGTCG 60.936 55.000 0.00 0.00 0.00 5.12
2666 6225 2.962786 TGCGGTGTTTGTCGTCGG 60.963 61.111 0.00 0.00 0.00 4.79
2667 6226 4.364409 GCGGTGTTTGTCGTCGGC 62.364 66.667 0.00 0.00 0.00 5.54
2668 6227 2.660552 CGGTGTTTGTCGTCGGCT 60.661 61.111 0.00 0.00 0.00 5.52
2669 6228 2.654912 CGGTGTTTGTCGTCGGCTC 61.655 63.158 0.00 0.00 0.00 4.70
2670 6229 2.654912 GGTGTTTGTCGTCGGCTCG 61.655 63.158 0.00 0.00 0.00 5.03
2671 6230 3.033764 TGTTTGTCGTCGGCTCGC 61.034 61.111 0.00 0.00 0.00 5.03
2672 6231 2.733593 GTTTGTCGTCGGCTCGCT 60.734 61.111 0.00 0.00 0.00 4.93
2673 6232 2.028484 TTTGTCGTCGGCTCGCTT 59.972 55.556 0.00 0.00 0.00 4.68
2674 6233 2.019951 TTTGTCGTCGGCTCGCTTC 61.020 57.895 0.00 0.00 0.00 3.86
2675 6234 3.909258 TTGTCGTCGGCTCGCTTCC 62.909 63.158 0.00 0.00 0.00 3.46
2679 6238 4.516195 GTCGGCTCGCTTCCCCTC 62.516 72.222 0.00 0.00 0.00 4.30
2680 6239 4.761058 TCGGCTCGCTTCCCCTCT 62.761 66.667 0.00 0.00 0.00 3.69
2681 6240 4.214327 CGGCTCGCTTCCCCTCTC 62.214 72.222 0.00 0.00 0.00 3.20
2682 6241 4.214327 GGCTCGCTTCCCCTCTCG 62.214 72.222 0.00 0.00 0.00 4.04
2683 6242 4.882396 GCTCGCTTCCCCTCTCGC 62.882 72.222 0.00 0.00 0.00 5.03
2684 6243 4.560856 CTCGCTTCCCCTCTCGCG 62.561 72.222 0.00 0.00 46.28 5.87
2687 6246 4.856607 GCTTCCCCTCTCGCGACG 62.857 72.222 3.71 1.32 0.00 5.12
2688 6247 3.132139 CTTCCCCTCTCGCGACGA 61.132 66.667 3.71 6.39 0.00 4.20
2689 6248 3.398353 CTTCCCCTCTCGCGACGAC 62.398 68.421 3.71 0.00 0.00 4.34
2700 6259 4.180946 CGACGACGCTCCCTGGAG 62.181 72.222 8.91 8.91 44.56 3.86
2701 6260 3.063084 GACGACGCTCCCTGGAGT 61.063 66.667 14.45 0.00 43.70 3.85
2702 6261 2.600769 ACGACGCTCCCTGGAGTT 60.601 61.111 14.45 2.39 43.70 3.01
2703 6262 2.182030 CGACGCTCCCTGGAGTTC 59.818 66.667 14.45 10.14 43.70 3.01
2704 6263 2.579738 GACGCTCCCTGGAGTTCC 59.420 66.667 14.45 0.95 43.70 3.62
2705 6264 2.203788 ACGCTCCCTGGAGTTCCA 60.204 61.111 14.45 0.18 45.30 3.53
2706 6265 1.613630 ACGCTCCCTGGAGTTCCAT 60.614 57.895 14.45 0.00 46.46 3.41
2707 6266 1.144936 CGCTCCCTGGAGTTCCATC 59.855 63.158 14.45 0.00 46.46 3.51
2708 6267 1.144936 GCTCCCTGGAGTTCCATCG 59.855 63.158 14.45 0.00 46.46 3.84
2709 6268 1.144936 CTCCCTGGAGTTCCATCGC 59.855 63.158 4.97 0.00 46.46 4.58
2710 6269 2.202932 CCCTGGAGTTCCATCGCG 60.203 66.667 0.00 0.00 46.46 5.87
2711 6270 2.892425 CCTGGAGTTCCATCGCGC 60.892 66.667 0.00 0.00 46.46 6.86
2712 6271 3.257561 CTGGAGTTCCATCGCGCG 61.258 66.667 26.76 26.76 46.46 6.86
2713 6272 4.812476 TGGAGTTCCATCGCGCGG 62.812 66.667 31.69 15.09 42.01 6.46
2730 6289 4.821589 GCGGCTGACTTCCCCGAG 62.822 72.222 0.00 0.00 44.55 4.63
2731 6290 4.821589 CGGCTGACTTCCCCGAGC 62.822 72.222 0.00 0.00 44.55 5.03
2732 6291 4.475135 GGCTGACTTCCCCGAGCC 62.475 72.222 0.00 0.00 44.10 4.70
2733 6292 4.475135 GCTGACTTCCCCGAGCCC 62.475 72.222 0.00 0.00 0.00 5.19
2734 6293 4.148825 CTGACTTCCCCGAGCCCG 62.149 72.222 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.119849 CCAAACAGCTCAAAGTATTCCCG 60.120 47.826 0.00 0.00 0.00 5.14
87 89 3.938289 ACGGCTAGCTAGTTATTAGGC 57.062 47.619 21.62 8.19 36.83 3.93
553 572 0.938168 ACACGTTTCTTCGTCCTCGC 60.938 55.000 0.00 0.00 42.27 5.03
610 632 7.324388 TCTCTGTCCAATAAAAAGAACCCTA 57.676 36.000 0.00 0.00 0.00 3.53
626 648 6.913170 TCAAAATGCAGTATTTTCTCTGTCC 58.087 36.000 6.26 0.00 44.93 4.02
740 762 9.897744 CTCTGCATTTTCTAAGTATTTTGTGAA 57.102 29.630 0.00 0.00 0.00 3.18
741 763 8.023128 GCTCTGCATTTTCTAAGTATTTTGTGA 58.977 33.333 0.00 0.00 0.00 3.58
742 764 8.025445 AGCTCTGCATTTTCTAAGTATTTTGTG 58.975 33.333 0.00 0.00 0.00 3.33
743 765 8.115490 AGCTCTGCATTTTCTAAGTATTTTGT 57.885 30.769 0.00 0.00 0.00 2.83
746 768 9.618890 TGATAGCTCTGCATTTTCTAAGTATTT 57.381 29.630 0.00 0.00 0.00 1.40
747 769 9.618890 TTGATAGCTCTGCATTTTCTAAGTATT 57.381 29.630 0.00 0.00 0.00 1.89
748 770 9.618890 TTTGATAGCTCTGCATTTTCTAAGTAT 57.381 29.630 0.00 0.00 0.00 2.12
749 771 8.883731 GTTTGATAGCTCTGCATTTTCTAAGTA 58.116 33.333 0.00 0.00 0.00 2.24
750 772 7.413438 CGTTTGATAGCTCTGCATTTTCTAAGT 60.413 37.037 0.00 0.00 0.00 2.24
751 773 6.904011 CGTTTGATAGCTCTGCATTTTCTAAG 59.096 38.462 0.00 0.00 0.00 2.18
752 774 6.183360 CCGTTTGATAGCTCTGCATTTTCTAA 60.183 38.462 0.00 0.00 0.00 2.10
753 775 5.294306 CCGTTTGATAGCTCTGCATTTTCTA 59.706 40.000 0.00 0.00 0.00 2.10
754 776 4.095483 CCGTTTGATAGCTCTGCATTTTCT 59.905 41.667 0.00 0.00 0.00 2.52
755 777 4.346129 CCGTTTGATAGCTCTGCATTTTC 58.654 43.478 0.00 0.00 0.00 2.29
756 778 3.129287 CCCGTTTGATAGCTCTGCATTTT 59.871 43.478 0.00 0.00 0.00 1.82
757 779 2.684881 CCCGTTTGATAGCTCTGCATTT 59.315 45.455 0.00 0.00 0.00 2.32
758 780 2.292267 CCCGTTTGATAGCTCTGCATT 58.708 47.619 0.00 0.00 0.00 3.56
759 781 1.475751 CCCCGTTTGATAGCTCTGCAT 60.476 52.381 0.00 0.00 0.00 3.96
760 782 0.107703 CCCCGTTTGATAGCTCTGCA 60.108 55.000 0.00 0.00 0.00 4.41
761 783 1.440145 GCCCCGTTTGATAGCTCTGC 61.440 60.000 0.00 0.00 0.00 4.26
762 784 0.815615 GGCCCCGTTTGATAGCTCTG 60.816 60.000 0.00 0.00 0.00 3.35
763 785 0.983378 AGGCCCCGTTTGATAGCTCT 60.983 55.000 0.00 0.00 0.00 4.09
764 786 0.756903 TAGGCCCCGTTTGATAGCTC 59.243 55.000 0.00 0.00 0.00 4.09
765 787 1.141053 CTTAGGCCCCGTTTGATAGCT 59.859 52.381 0.00 0.00 0.00 3.32
766 788 1.594331 CTTAGGCCCCGTTTGATAGC 58.406 55.000 0.00 0.00 0.00 2.97
767 789 1.766496 TCCTTAGGCCCCGTTTGATAG 59.234 52.381 0.00 0.00 0.00 2.08
768 790 1.882308 TCCTTAGGCCCCGTTTGATA 58.118 50.000 0.00 0.00 0.00 2.15
769 791 1.222567 ATCCTTAGGCCCCGTTTGAT 58.777 50.000 0.00 0.00 0.00 2.57
770 792 0.996583 AATCCTTAGGCCCCGTTTGA 59.003 50.000 0.00 0.00 0.00 2.69
771 793 1.847328 AAATCCTTAGGCCCCGTTTG 58.153 50.000 0.00 0.00 0.00 2.93
772 794 3.743092 TTAAATCCTTAGGCCCCGTTT 57.257 42.857 0.00 0.00 0.00 3.60
773 795 3.743092 TTTAAATCCTTAGGCCCCGTT 57.257 42.857 0.00 0.00 0.00 4.44
774 796 3.462205 AGATTTAAATCCTTAGGCCCCGT 59.538 43.478 21.86 0.00 36.04 5.28
775 797 4.100279 AGATTTAAATCCTTAGGCCCCG 57.900 45.455 21.86 0.00 36.04 5.73
776 798 6.136857 AGAAAGATTTAAATCCTTAGGCCCC 58.863 40.000 21.86 5.37 36.04 5.80
777 799 7.342026 TGAAGAAAGATTTAAATCCTTAGGCCC 59.658 37.037 21.86 5.98 36.04 5.80
778 800 8.293699 TGAAGAAAGATTTAAATCCTTAGGCC 57.706 34.615 21.86 0.00 36.04 5.19
868 892 4.574828 CGCAGGCAATAGTTTGGTAGTATT 59.425 41.667 0.00 0.00 33.52 1.89
1065 1112 0.822811 GGAGAGGGTTAGGGTCGAAC 59.177 60.000 0.00 0.00 0.00 3.95
1173 1235 0.445043 CGCGCATATCACCATGGATG 59.555 55.000 21.47 12.81 0.00 3.51
1174 1236 0.035317 ACGCGCATATCACCATGGAT 59.965 50.000 21.47 4.75 0.00 3.41
1175 1237 0.676736 TACGCGCATATCACCATGGA 59.323 50.000 21.47 0.00 0.00 3.41
1176 1238 0.790207 GTACGCGCATATCACCATGG 59.210 55.000 11.19 11.19 0.00 3.66
1216 1287 4.659172 CGGGTCCTTGCAGGCCAA 62.659 66.667 5.01 0.00 34.52 4.52
1614 1688 3.241530 TTGCCGAGGAGCACCAGT 61.242 61.111 2.07 0.00 43.97 4.00
1766 1846 3.859386 GCCCGCAGAAAATACAAAGAATG 59.141 43.478 0.00 0.00 0.00 2.67
1900 1984 8.424731 GTCAAATCATAACGGTGTTCAAAAATC 58.575 33.333 0.00 0.00 0.00 2.17
1918 2008 8.563732 TGTGATAATTTTGTTCGAGTCAAATCA 58.436 29.630 15.08 13.10 35.25 2.57
2038 2162 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2039 2163 2.094390 TGACAAGTAATTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2040 2164 1.894466 TGACAAGTAATTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2041 2165 2.373540 TGACAAGTAATTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2042 2166 6.411630 TTTAATGACAAGTAATTCCGGACG 57.588 37.500 1.83 0.00 0.00 4.79
2043 2167 7.700656 CCATTTTAATGACAAGTAATTCCGGAC 59.299 37.037 1.83 0.00 38.70 4.79
2045 2169 7.767261 TCCATTTTAATGACAAGTAATTCCGG 58.233 34.615 0.00 0.00 38.70 5.14
2046 2170 9.236691 CATCCATTTTAATGACAAGTAATTCCG 57.763 33.333 4.07 0.00 38.70 4.30
2085 2209 7.924541 TGAACTGGGTGTATCTAGGTATTTTT 58.075 34.615 0.00 0.00 0.00 1.94
2086 2210 7.504926 TGAACTGGGTGTATCTAGGTATTTT 57.495 36.000 0.00 0.00 0.00 1.82
2087 2211 7.504926 TTGAACTGGGTGTATCTAGGTATTT 57.495 36.000 0.00 0.00 0.00 1.40
2088 2212 7.347222 TCATTGAACTGGGTGTATCTAGGTATT 59.653 37.037 0.00 0.00 0.00 1.89
2089 2213 6.844388 TCATTGAACTGGGTGTATCTAGGTAT 59.156 38.462 0.00 0.00 0.00 2.73
2090 2214 6.097839 GTCATTGAACTGGGTGTATCTAGGTA 59.902 42.308 0.00 0.00 0.00 3.08
2091 2215 5.030147 TCATTGAACTGGGTGTATCTAGGT 58.970 41.667 0.00 0.00 0.00 3.08
2092 2216 5.104941 TGTCATTGAACTGGGTGTATCTAGG 60.105 44.000 0.00 0.00 0.00 3.02
2093 2217 5.977635 TGTCATTGAACTGGGTGTATCTAG 58.022 41.667 0.00 0.00 0.00 2.43
2094 2218 6.013725 ACTTGTCATTGAACTGGGTGTATCTA 60.014 38.462 0.00 0.00 0.00 1.98
2095 2219 4.908601 TGTCATTGAACTGGGTGTATCT 57.091 40.909 0.00 0.00 0.00 1.98
2096 2220 5.003804 ACTTGTCATTGAACTGGGTGTATC 58.996 41.667 0.00 0.00 0.00 2.24
2097 2221 4.985538 ACTTGTCATTGAACTGGGTGTAT 58.014 39.130 0.00 0.00 0.00 2.29
2098 2222 4.431416 ACTTGTCATTGAACTGGGTGTA 57.569 40.909 0.00 0.00 0.00 2.90
2099 2223 3.297134 ACTTGTCATTGAACTGGGTGT 57.703 42.857 0.00 0.00 0.00 4.16
2100 2224 5.964958 AATACTTGTCATTGAACTGGGTG 57.035 39.130 0.00 0.00 0.00 4.61
2101 2225 5.476945 GGAAATACTTGTCATTGAACTGGGT 59.523 40.000 0.00 0.00 0.00 4.51
2102 2226 5.391950 CGGAAATACTTGTCATTGAACTGGG 60.392 44.000 0.00 0.00 0.00 4.45
2103 2227 5.391950 CCGGAAATACTTGTCATTGAACTGG 60.392 44.000 0.00 0.00 0.00 4.00
2104 2228 5.411361 TCCGGAAATACTTGTCATTGAACTG 59.589 40.000 0.00 0.00 0.00 3.16
2105 2229 5.411669 GTCCGGAAATACTTGTCATTGAACT 59.588 40.000 5.23 0.00 0.00 3.01
2106 2230 5.628134 GTCCGGAAATACTTGTCATTGAAC 58.372 41.667 5.23 0.00 0.00 3.18
2107 2231 4.390603 CGTCCGGAAATACTTGTCATTGAA 59.609 41.667 5.23 0.00 0.00 2.69
2108 2232 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
2109 2233 3.063452 CCGTCCGGAAATACTTGTCATTG 59.937 47.826 5.23 0.00 37.50 2.82
2110 2234 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
2111 2235 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2112 2236 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2113 2237 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2114 2238 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2115 2239 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2116 2240 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2117 2241 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2118 2242 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2119 2243 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2120 2244 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2121 2245 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2122 2246 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2123 2247 2.262774 GAGTACTCCCTCCGTCCGGA 62.263 65.000 12.13 0.00 42.90 5.14
2124 2248 1.823041 GAGTACTCCCTCCGTCCGG 60.823 68.421 12.13 0.00 0.00 5.14
2125 2249 0.465824 ATGAGTACTCCCTCCGTCCG 60.466 60.000 20.11 0.00 0.00 4.79
2126 2250 1.033574 CATGAGTACTCCCTCCGTCC 58.966 60.000 20.11 0.00 0.00 4.79
2127 2251 2.054232 TCATGAGTACTCCCTCCGTC 57.946 55.000 20.11 0.00 0.00 4.79
2128 2252 2.526888 TTCATGAGTACTCCCTCCGT 57.473 50.000 20.11 0.00 0.00 4.69
2129 2253 3.887621 TTTTCATGAGTACTCCCTCCG 57.112 47.619 20.11 4.35 0.00 4.63
2193 5740 8.934023 TGAAAATGGATTGTTAAGTACTCCTT 57.066 30.769 0.00 0.00 37.17 3.36
2221 5780 9.187455 TGAAAATAGATTTTACCGCAAAAAGAC 57.813 29.630 0.28 0.00 39.86 3.01
2222 5781 9.921637 ATGAAAATAGATTTTACCGCAAAAAGA 57.078 25.926 0.28 0.00 39.86 2.52
2229 5788 9.353999 ACAAGAAATGAAAATAGATTTTACCGC 57.646 29.630 0.28 0.00 39.86 5.68
2245 5804 3.813166 GACTTCACCGGAACAAGAAATGA 59.187 43.478 9.46 0.00 0.00 2.57
2254 5813 2.882137 TGAAAATGGACTTCACCGGAAC 59.118 45.455 9.46 0.00 0.00 3.62
2258 5817 4.697352 AGAGAATGAAAATGGACTTCACCG 59.303 41.667 0.00 0.00 35.70 4.94
2289 5848 5.716228 AGAATGGTAATGGATTTCACAGCAA 59.284 36.000 0.00 0.00 0.00 3.91
2290 5849 5.263599 AGAATGGTAATGGATTTCACAGCA 58.736 37.500 0.00 0.00 0.00 4.41
2381 5940 5.018539 TGACCGGGAGTTATATGAACTTG 57.981 43.478 6.32 0.00 0.00 3.16
2385 5944 3.135167 GGGTTGACCGGGAGTTATATGAA 59.865 47.826 6.32 0.00 36.71 2.57
2388 5947 2.436911 GTGGGTTGACCGGGAGTTATAT 59.563 50.000 6.32 0.00 44.64 0.86
2389 5948 1.832998 GTGGGTTGACCGGGAGTTATA 59.167 52.381 6.32 0.00 44.64 0.98
2390 5949 0.616891 GTGGGTTGACCGGGAGTTAT 59.383 55.000 6.32 0.00 44.64 1.89
2391 5950 1.482748 GGTGGGTTGACCGGGAGTTA 61.483 60.000 6.32 0.00 44.64 2.24
2392 5951 2.826003 GGTGGGTTGACCGGGAGTT 61.826 63.158 6.32 0.00 44.64 3.01
2394 5953 2.928396 AGGTGGGTTGACCGGGAG 60.928 66.667 6.32 0.00 44.64 4.30
2395 5954 2.926242 GAGGTGGGTTGACCGGGA 60.926 66.667 6.32 0.00 44.64 5.14
2396 5955 3.246112 TGAGGTGGGTTGACCGGG 61.246 66.667 6.32 0.00 44.64 5.73
2397 5956 2.032071 GTGAGGTGGGTTGACCGG 59.968 66.667 0.00 0.00 44.64 5.28
2398 5957 1.301716 CAGTGAGGTGGGTTGACCG 60.302 63.158 0.00 0.00 44.64 4.79
2399 5958 1.073199 CCAGTGAGGTGGGTTGACC 59.927 63.158 0.00 0.00 40.81 4.02
2400 5959 1.600916 GCCAGTGAGGTGGGTTGAC 60.601 63.158 0.00 0.00 40.61 3.18
2401 5960 1.426251 ATGCCAGTGAGGTGGGTTGA 61.426 55.000 0.00 0.00 40.61 3.18
2402 5961 0.540365 AATGCCAGTGAGGTGGGTTG 60.540 55.000 0.00 0.00 40.61 3.77
2403 5962 0.540365 CAATGCCAGTGAGGTGGGTT 60.540 55.000 0.00 0.00 40.61 4.11
2404 5963 1.075482 CAATGCCAGTGAGGTGGGT 59.925 57.895 0.00 0.00 40.61 4.51
2405 5964 0.679002 CTCAATGCCAGTGAGGTGGG 60.679 60.000 14.13 0.00 39.10 4.61
2406 5965 2.864114 CTCAATGCCAGTGAGGTGG 58.136 57.895 14.13 0.00 39.10 4.61
2410 5969 1.277273 TCACTCCTCAATGCCAGTGAG 59.723 52.381 14.93 14.93 40.25 3.51
2411 5970 1.002430 GTCACTCCTCAATGCCAGTGA 59.998 52.381 0.00 0.00 42.34 3.41
2412 5971 1.002888 AGTCACTCCTCAATGCCAGTG 59.997 52.381 0.00 0.00 38.09 3.66
2413 5972 1.356124 AGTCACTCCTCAATGCCAGT 58.644 50.000 0.00 0.00 0.00 4.00
2414 5973 2.082231 CAAGTCACTCCTCAATGCCAG 58.918 52.381 0.00 0.00 0.00 4.85
2415 5974 1.271543 CCAAGTCACTCCTCAATGCCA 60.272 52.381 0.00 0.00 0.00 4.92
2416 5975 1.003580 TCCAAGTCACTCCTCAATGCC 59.996 52.381 0.00 0.00 0.00 4.40
2417 5976 2.079925 GTCCAAGTCACTCCTCAATGC 58.920 52.381 0.00 0.00 0.00 3.56
2418 5977 2.341257 CGTCCAAGTCACTCCTCAATG 58.659 52.381 0.00 0.00 0.00 2.82
2419 5978 1.338200 GCGTCCAAGTCACTCCTCAAT 60.338 52.381 0.00 0.00 0.00 2.57
2420 5979 0.033504 GCGTCCAAGTCACTCCTCAA 59.966 55.000 0.00 0.00 0.00 3.02
2421 5980 0.827925 AGCGTCCAAGTCACTCCTCA 60.828 55.000 0.00 0.00 0.00 3.86
2422 5981 0.109039 GAGCGTCCAAGTCACTCCTC 60.109 60.000 0.00 0.00 0.00 3.71
2423 5982 1.536943 GGAGCGTCCAAGTCACTCCT 61.537 60.000 0.00 0.00 42.99 3.69
2424 5983 1.079750 GGAGCGTCCAAGTCACTCC 60.080 63.158 0.00 0.00 40.14 3.85
2425 5984 1.079750 GGGAGCGTCCAAGTCACTC 60.080 63.158 6.41 0.00 38.64 3.51
2426 5985 2.584391 GGGGAGCGTCCAAGTCACT 61.584 63.158 6.41 0.00 38.64 3.41
2427 5986 2.047179 GGGGAGCGTCCAAGTCAC 60.047 66.667 6.41 0.00 38.64 3.67
2428 5987 2.203788 AGGGGAGCGTCCAAGTCA 60.204 61.111 6.41 0.00 38.64 3.41
2429 5988 1.950973 GAGAGGGGAGCGTCCAAGTC 61.951 65.000 6.41 0.83 38.64 3.01
2430 5989 1.985116 GAGAGGGGAGCGTCCAAGT 60.985 63.158 6.41 0.00 38.64 3.16
2431 5990 1.671901 GAGAGAGGGGAGCGTCCAAG 61.672 65.000 6.41 0.00 38.64 3.61
2432 5991 1.682684 GAGAGAGGGGAGCGTCCAA 60.683 63.158 6.41 0.00 38.64 3.53
2433 5992 2.043852 GAGAGAGGGGAGCGTCCA 60.044 66.667 6.41 0.00 38.64 4.02
2434 5993 2.835895 GGAGAGAGGGGAGCGTCC 60.836 72.222 0.00 0.00 35.23 4.79
2435 5994 2.835895 GGGAGAGAGGGGAGCGTC 60.836 72.222 0.00 0.00 0.00 5.19
2436 5995 4.824515 CGGGAGAGAGGGGAGCGT 62.825 72.222 0.00 0.00 0.00 5.07
2437 5996 4.824515 ACGGGAGAGAGGGGAGCG 62.825 72.222 0.00 0.00 0.00 5.03
2438 5997 2.835895 GACGGGAGAGAGGGGAGC 60.836 72.222 0.00 0.00 0.00 4.70
2439 5998 1.755008 GTGACGGGAGAGAGGGGAG 60.755 68.421 0.00 0.00 0.00 4.30
2440 5999 2.239439 AGTGACGGGAGAGAGGGGA 61.239 63.158 0.00 0.00 0.00 4.81
2441 6000 2.055042 CAGTGACGGGAGAGAGGGG 61.055 68.421 0.00 0.00 0.00 4.79
2442 6001 0.034380 TACAGTGACGGGAGAGAGGG 60.034 60.000 0.00 0.00 0.00 4.30
2443 6002 1.384525 CTACAGTGACGGGAGAGAGG 58.615 60.000 0.00 0.00 0.00 3.69
2444 6003 0.736053 GCTACAGTGACGGGAGAGAG 59.264 60.000 0.00 0.00 0.00 3.20
2445 6004 1.025113 CGCTACAGTGACGGGAGAGA 61.025 60.000 0.00 0.00 0.00 3.10
2446 6005 1.025113 TCGCTACAGTGACGGGAGAG 61.025 60.000 0.00 0.00 0.00 3.20
2447 6006 1.002990 TCGCTACAGTGACGGGAGA 60.003 57.895 0.00 0.00 0.00 3.71
2448 6007 1.025113 TCTCGCTACAGTGACGGGAG 61.025 60.000 17.70 17.70 38.59 4.30
2449 6008 1.002990 TCTCGCTACAGTGACGGGA 60.003 57.895 0.00 0.00 33.05 5.14
2450 6009 1.429825 CTCTCGCTACAGTGACGGG 59.570 63.158 0.00 0.00 0.00 5.28
2451 6010 1.429825 CCTCTCGCTACAGTGACGG 59.570 63.158 0.00 0.00 0.00 4.79
2452 6011 1.226435 GCCTCTCGCTACAGTGACG 60.226 63.158 0.00 0.00 0.00 4.35
2453 6012 1.226435 CGCCTCTCGCTACAGTGAC 60.226 63.158 0.00 0.00 34.21 3.67
2454 6013 0.748367 ATCGCCTCTCGCTACAGTGA 60.748 55.000 0.00 0.00 38.27 3.41
2455 6014 0.101399 AATCGCCTCTCGCTACAGTG 59.899 55.000 0.00 0.00 38.27 3.66
2456 6015 0.818296 AAATCGCCTCTCGCTACAGT 59.182 50.000 0.00 0.00 38.27 3.55
2457 6016 1.855360 GAAAATCGCCTCTCGCTACAG 59.145 52.381 0.00 0.00 38.27 2.74
2458 6017 1.476891 AGAAAATCGCCTCTCGCTACA 59.523 47.619 0.00 0.00 38.27 2.74
2459 6018 1.855360 CAGAAAATCGCCTCTCGCTAC 59.145 52.381 0.00 0.00 38.27 3.58
2460 6019 1.749063 TCAGAAAATCGCCTCTCGCTA 59.251 47.619 0.00 0.00 38.27 4.26
2461 6020 0.532573 TCAGAAAATCGCCTCTCGCT 59.467 50.000 0.00 0.00 38.27 4.93
2462 6021 0.926846 CTCAGAAAATCGCCTCTCGC 59.073 55.000 0.00 0.00 38.27 5.03
2463 6022 2.568696 TCTCAGAAAATCGCCTCTCG 57.431 50.000 0.00 0.00 40.15 4.04
2464 6023 3.855858 AGTTCTCAGAAAATCGCCTCTC 58.144 45.455 0.00 0.00 0.00 3.20
2465 6024 3.368948 GGAGTTCTCAGAAAATCGCCTCT 60.369 47.826 0.00 0.00 0.00 3.69
2466 6025 2.933260 GGAGTTCTCAGAAAATCGCCTC 59.067 50.000 0.00 0.00 0.00 4.70
2467 6026 2.355209 GGGAGTTCTCAGAAAATCGCCT 60.355 50.000 6.66 0.00 32.16 5.52
2468 6027 2.010497 GGGAGTTCTCAGAAAATCGCC 58.990 52.381 6.66 0.00 32.16 5.54
2469 6028 1.661112 CGGGAGTTCTCAGAAAATCGC 59.339 52.381 7.53 7.53 34.17 4.58
2470 6029 2.271800 CCGGGAGTTCTCAGAAAATCG 58.728 52.381 0.00 0.00 0.00 3.34
2471 6030 3.263261 GACCGGGAGTTCTCAGAAAATC 58.737 50.000 6.32 0.00 0.00 2.17
2472 6031 2.637872 TGACCGGGAGTTCTCAGAAAAT 59.362 45.455 6.32 0.00 0.00 1.82
2473 6032 2.043992 TGACCGGGAGTTCTCAGAAAA 58.956 47.619 6.32 0.00 0.00 2.29
2474 6033 1.712056 TGACCGGGAGTTCTCAGAAA 58.288 50.000 6.32 0.00 0.00 2.52
2475 6034 1.343465 GTTGACCGGGAGTTCTCAGAA 59.657 52.381 6.32 0.00 0.00 3.02
2476 6035 0.966920 GTTGACCGGGAGTTCTCAGA 59.033 55.000 6.32 0.00 0.00 3.27
2477 6036 0.037232 GGTTGACCGGGAGTTCTCAG 60.037 60.000 6.32 0.00 0.00 3.35
2478 6037 1.477685 GGGTTGACCGGGAGTTCTCA 61.478 60.000 6.32 0.00 36.71 3.27
2479 6038 1.295746 GGGTTGACCGGGAGTTCTC 59.704 63.158 6.32 0.00 36.71 2.87
2480 6039 1.460689 TGGGTTGACCGGGAGTTCT 60.461 57.895 6.32 0.00 44.64 3.01
2481 6040 1.302271 GTGGGTTGACCGGGAGTTC 60.302 63.158 6.32 0.00 44.64 3.01
2482 6041 2.826003 GGTGGGTTGACCGGGAGTT 61.826 63.158 6.32 0.00 44.64 3.01
2483 6042 3.246880 GGTGGGTTGACCGGGAGT 61.247 66.667 6.32 0.00 44.64 3.85
2484 6043 2.928396 AGGTGGGTTGACCGGGAG 60.928 66.667 6.32 0.00 44.64 4.30
2485 6044 2.926242 GAGGTGGGTTGACCGGGA 60.926 66.667 6.32 0.00 44.64 5.14
2486 6045 3.246112 TGAGGTGGGTTGACCGGG 61.246 66.667 6.32 0.00 44.64 5.73
2487 6046 2.032071 GTGAGGTGGGTTGACCGG 59.968 66.667 0.00 0.00 44.64 5.28
2488 6047 1.004918 GAGTGAGGTGGGTTGACCG 60.005 63.158 0.00 0.00 44.64 4.79
2489 6048 1.004918 CGAGTGAGGTGGGTTGACC 60.005 63.158 0.00 0.00 40.81 4.02
2490 6049 1.668151 GCGAGTGAGGTGGGTTGAC 60.668 63.158 0.00 0.00 0.00 3.18
2491 6050 2.741092 GCGAGTGAGGTGGGTTGA 59.259 61.111 0.00 0.00 0.00 3.18
2492 6051 2.358737 GGCGAGTGAGGTGGGTTG 60.359 66.667 0.00 0.00 0.00 3.77
2493 6052 4.003788 CGGCGAGTGAGGTGGGTT 62.004 66.667 0.00 0.00 0.00 4.11
2509 6068 0.594284 GAGGAAACCGTAGATCGCCG 60.594 60.000 0.71 0.71 38.35 6.46
2510 6069 0.249363 GGAGGAAACCGTAGATCGCC 60.249 60.000 0.00 0.00 38.35 5.54
2511 6070 0.594284 CGGAGGAAACCGTAGATCGC 60.594 60.000 0.00 0.00 46.70 4.58
2512 6071 3.546407 CGGAGGAAACCGTAGATCG 57.454 57.895 0.00 0.00 46.70 3.69
2520 6079 4.468689 CCGGAGGCGGAGGAAACC 62.469 72.222 0.00 0.00 46.14 3.27
2544 6103 3.771160 AACCTACCGCCGCTGGAG 61.771 66.667 8.04 0.00 0.00 3.86
2545 6104 4.077184 CAACCTACCGCCGCTGGA 62.077 66.667 8.04 0.00 0.00 3.86
2550 6109 3.256824 TTTCCCCAACCTACCGCCG 62.257 63.158 0.00 0.00 0.00 6.46
2551 6110 1.676635 GTTTCCCCAACCTACCGCC 60.677 63.158 0.00 0.00 0.00 6.13
2552 6111 3.991999 GTTTCCCCAACCTACCGC 58.008 61.111 0.00 0.00 0.00 5.68
2559 6118 2.203437 AGCCACGGTTTCCCCAAC 60.203 61.111 0.00 0.00 34.18 3.77
2560 6119 1.128809 TAGAGCCACGGTTTCCCCAA 61.129 55.000 0.00 0.00 0.00 4.12
2561 6120 1.536907 TAGAGCCACGGTTTCCCCA 60.537 57.895 0.00 0.00 0.00 4.96
2562 6121 1.221021 CTAGAGCCACGGTTTCCCC 59.779 63.158 0.00 0.00 0.00 4.81
2563 6122 1.221021 CCTAGAGCCACGGTTTCCC 59.779 63.158 0.00 0.00 0.00 3.97
2564 6123 1.449778 GCCTAGAGCCACGGTTTCC 60.450 63.158 0.00 0.00 34.35 3.13
2565 6124 0.036294 AAGCCTAGAGCCACGGTTTC 60.036 55.000 0.00 0.00 45.47 2.78
2566 6125 0.321653 CAAGCCTAGAGCCACGGTTT 60.322 55.000 0.00 0.00 45.47 3.27
2567 6126 1.296715 CAAGCCTAGAGCCACGGTT 59.703 57.895 0.00 0.00 45.47 4.44
2568 6127 0.613853 TACAAGCCTAGAGCCACGGT 60.614 55.000 0.00 0.00 45.47 4.83
2569 6128 0.179108 GTACAAGCCTAGAGCCACGG 60.179 60.000 0.00 0.00 45.47 4.94
2570 6129 0.530744 TGTACAAGCCTAGAGCCACG 59.469 55.000 0.00 0.00 45.47 4.94
2571 6130 2.990066 ATGTACAAGCCTAGAGCCAC 57.010 50.000 0.00 0.00 45.47 5.01
2572 6131 2.365617 GCTATGTACAAGCCTAGAGCCA 59.634 50.000 15.14 0.00 45.47 4.75
2573 6132 2.608261 CGCTATGTACAAGCCTAGAGCC 60.608 54.545 18.30 0.00 45.47 4.70
2574 6133 2.034812 ACGCTATGTACAAGCCTAGAGC 59.965 50.000 18.30 10.17 44.25 4.09
2575 6134 3.992260 ACGCTATGTACAAGCCTAGAG 57.008 47.619 18.30 11.83 36.60 2.43
2576 6135 3.819337 CCTACGCTATGTACAAGCCTAGA 59.181 47.826 22.31 9.95 36.60 2.43
2577 6136 3.057456 CCCTACGCTATGTACAAGCCTAG 60.057 52.174 18.30 18.23 36.60 3.02
2578 6137 2.889045 CCCTACGCTATGTACAAGCCTA 59.111 50.000 18.30 12.74 36.60 3.93
2579 6138 1.687123 CCCTACGCTATGTACAAGCCT 59.313 52.381 18.30 12.41 36.60 4.58
2580 6139 1.872653 GCCCTACGCTATGTACAAGCC 60.873 57.143 18.30 3.18 36.60 4.35
2581 6140 1.499049 GCCCTACGCTATGTACAAGC 58.501 55.000 15.74 15.74 36.60 4.01
2592 6151 2.504519 CCCTACCAAGCCCTACGC 59.495 66.667 0.00 0.00 37.98 4.42
2593 6152 2.504519 GCCCTACCAAGCCCTACG 59.495 66.667 0.00 0.00 0.00 3.51
2594 6153 2.916661 GGCCCTACCAAGCCCTAC 59.083 66.667 0.00 0.00 43.76 3.18
2620 6179 3.723235 CTCCACCTCCATGGCGACG 62.723 68.421 6.96 0.00 39.85 5.12
2621 6180 1.690219 ATCTCCACCTCCATGGCGAC 61.690 60.000 6.96 0.00 36.32 5.19
2622 6181 1.383109 ATCTCCACCTCCATGGCGA 60.383 57.895 6.96 0.00 39.85 5.54
2623 6182 1.227764 CATCTCCACCTCCATGGCG 60.228 63.158 6.96 0.00 39.85 5.69
2624 6183 1.150081 CCATCTCCACCTCCATGGC 59.850 63.158 6.96 0.00 39.85 4.40
2625 6184 1.150081 GCCATCTCCACCTCCATGG 59.850 63.158 4.97 4.97 41.57 3.66
2626 6185 1.227764 CGCCATCTCCACCTCCATG 60.228 63.158 0.00 0.00 0.00 3.66
2627 6186 1.274703 AACGCCATCTCCACCTCCAT 61.275 55.000 0.00 0.00 0.00 3.41
2628 6187 0.616395 TAACGCCATCTCCACCTCCA 60.616 55.000 0.00 0.00 0.00 3.86
2629 6188 0.105039 CTAACGCCATCTCCACCTCC 59.895 60.000 0.00 0.00 0.00 4.30
2630 6189 0.824759 ACTAACGCCATCTCCACCTC 59.175 55.000 0.00 0.00 0.00 3.85
2631 6190 0.537188 CACTAACGCCATCTCCACCT 59.463 55.000 0.00 0.00 0.00 4.00
2632 6191 1.090052 GCACTAACGCCATCTCCACC 61.090 60.000 0.00 0.00 0.00 4.61
2633 6192 1.421410 CGCACTAACGCCATCTCCAC 61.421 60.000 0.00 0.00 0.00 4.02
2634 6193 1.153647 CGCACTAACGCCATCTCCA 60.154 57.895 0.00 0.00 0.00 3.86
2635 6194 1.883084 CCGCACTAACGCCATCTCC 60.883 63.158 0.00 0.00 0.00 3.71
2636 6195 1.153628 ACCGCACTAACGCCATCTC 60.154 57.895 0.00 0.00 0.00 2.75
2637 6196 1.447838 CACCGCACTAACGCCATCT 60.448 57.895 0.00 0.00 0.00 2.90
2638 6197 1.296056 AACACCGCACTAACGCCATC 61.296 55.000 0.00 0.00 0.00 3.51
2639 6198 0.887387 AAACACCGCACTAACGCCAT 60.887 50.000 0.00 0.00 0.00 4.40
2640 6199 1.524165 AAACACCGCACTAACGCCA 60.524 52.632 0.00 0.00 0.00 5.69
2641 6200 1.082366 CAAACACCGCACTAACGCC 60.082 57.895 0.00 0.00 0.00 5.68
2642 6201 0.383860 GACAAACACCGCACTAACGC 60.384 55.000 0.00 0.00 0.00 4.84
2643 6202 0.111442 CGACAAACACCGCACTAACG 60.111 55.000 0.00 0.00 0.00 3.18
2644 6203 0.932399 ACGACAAACACCGCACTAAC 59.068 50.000 0.00 0.00 0.00 2.34
2645 6204 1.210870 GACGACAAACACCGCACTAA 58.789 50.000 0.00 0.00 0.00 2.24
2646 6205 0.935831 CGACGACAAACACCGCACTA 60.936 55.000 0.00 0.00 0.00 2.74
2647 6206 2.235016 CGACGACAAACACCGCACT 61.235 57.895 0.00 0.00 0.00 4.40
2648 6207 2.244382 CGACGACAAACACCGCAC 59.756 61.111 0.00 0.00 0.00 5.34
2649 6208 2.962786 CCGACGACAAACACCGCA 60.963 61.111 0.00 0.00 0.00 5.69
2650 6209 4.364409 GCCGACGACAAACACCGC 62.364 66.667 0.00 0.00 0.00 5.68
2651 6210 2.654912 GAGCCGACGACAAACACCG 61.655 63.158 0.00 0.00 0.00 4.94
2652 6211 2.654912 CGAGCCGACGACAAACACC 61.655 63.158 0.00 0.00 35.09 4.16
2653 6212 2.844146 CGAGCCGACGACAAACAC 59.156 61.111 0.00 0.00 35.09 3.32
2654 6213 2.964438 AAGCGAGCCGACGACAAACA 62.964 55.000 0.00 0.00 35.09 2.83
2655 6214 2.211761 GAAGCGAGCCGACGACAAAC 62.212 60.000 0.00 0.00 35.09 2.93
2656 6215 2.019951 GAAGCGAGCCGACGACAAA 61.020 57.895 0.00 0.00 35.09 2.83
2657 6216 2.430244 GAAGCGAGCCGACGACAA 60.430 61.111 0.00 0.00 35.09 3.18
2658 6217 4.415332 GGAAGCGAGCCGACGACA 62.415 66.667 0.00 0.00 35.09 4.35
2662 6221 4.516195 GAGGGGAAGCGAGCCGAC 62.516 72.222 0.00 0.00 0.00 4.79
2663 6222 4.761058 AGAGGGGAAGCGAGCCGA 62.761 66.667 0.00 0.00 0.00 5.54
2664 6223 4.214327 GAGAGGGGAAGCGAGCCG 62.214 72.222 0.00 0.00 0.00 5.52
2665 6224 4.214327 CGAGAGGGGAAGCGAGCC 62.214 72.222 0.00 0.00 0.00 4.70
2666 6225 4.882396 GCGAGAGGGGAAGCGAGC 62.882 72.222 0.00 0.00 0.00 5.03
2670 6229 4.856607 CGTCGCGAGAGGGGAAGC 62.857 72.222 10.24 0.00 43.49 3.86
2671 6230 3.132139 TCGTCGCGAGAGGGGAAG 61.132 66.667 10.24 0.00 45.49 3.46
2672 6231 3.437795 GTCGTCGCGAGAGGGGAA 61.438 66.667 10.24 0.00 45.49 3.97
2683 6242 4.180946 CTCCAGGGAGCGTCGTCG 62.181 72.222 1.73 0.00 35.31 5.12
2684 6243 2.545165 GAACTCCAGGGAGCGTCGTC 62.545 65.000 15.18 2.23 45.54 4.20
2685 6244 2.600769 AACTCCAGGGAGCGTCGT 60.601 61.111 15.18 0.00 45.54 4.34
2686 6245 2.182030 GAACTCCAGGGAGCGTCG 59.818 66.667 15.18 0.00 45.54 5.12
2687 6246 2.283529 TGGAACTCCAGGGAGCGTC 61.284 63.158 15.18 12.17 45.54 5.19
2688 6247 2.203788 TGGAACTCCAGGGAGCGT 60.204 61.111 15.18 3.58 45.54 5.07
2713 6272 4.821589 CTCGGGGAAGTCAGCCGC 62.822 72.222 0.00 0.00 35.22 6.53
2714 6273 4.821589 GCTCGGGGAAGTCAGCCG 62.822 72.222 0.00 0.00 0.00 5.52
2715 6274 4.475135 GGCTCGGGGAAGTCAGCC 62.475 72.222 0.00 0.00 44.63 4.85
2716 6275 4.475135 GGGCTCGGGGAAGTCAGC 62.475 72.222 0.00 0.00 0.00 4.26
2717 6276 4.148825 CGGGCTCGGGGAAGTCAG 62.149 72.222 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.