Multiple sequence alignment - TraesCS7D01G428200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G428200 chr7D 100.000 3288 0 0 1 3288 548771944 548775231 0.000000e+00 6072.0
1 TraesCS7D01G428200 chr7D 93.377 151 5 5 3073 3222 309743989 309744135 5.520000e-53 219.0
2 TraesCS7D01G428200 chr7D 90.625 64 3 3 2653 2714 152441564 152441502 7.560000e-12 82.4
3 TraesCS7D01G428200 chr7A 93.738 2587 135 19 102 2670 632546768 632549345 0.000000e+00 3855.0
4 TraesCS7D01G428200 chr7A 87.866 239 9 4 2832 3066 632549523 632549745 2.520000e-66 263.0
5 TraesCS7D01G428200 chr7A 97.710 131 3 0 3072 3202 99804485 99804355 3.300000e-55 226.0
6 TraesCS7D01G428200 chr7A 91.791 134 10 1 3073 3205 127823930 127823797 5.600000e-43 185.0
7 TraesCS7D01G428200 chr7A 94.186 86 5 0 3203 3288 632545434 632545519 7.400000e-27 132.0
8 TraesCS7D01G428200 chr7A 89.888 89 8 1 2746 2833 675318625 675318713 2.680000e-21 113.0
9 TraesCS7D01G428200 chr7A 91.358 81 7 0 1 81 632546693 632546773 9.640000e-21 111.0
10 TraesCS7D01G428200 chr7A 91.667 60 3 2 2656 2714 2850671 2850613 7.560000e-12 82.4
11 TraesCS7D01G428200 chr7B 91.619 2267 143 23 412 2658 592344052 592346291 0.000000e+00 3090.0
12 TraesCS7D01G428200 chr7B 92.967 1692 91 10 867 2533 591954883 591953195 0.000000e+00 2440.0
13 TraesCS7D01G428200 chr7B 89.862 217 18 3 102 317 592343716 592343929 3.230000e-70 276.0
14 TraesCS7D01G428200 chr7B 91.667 132 11 0 247 378 592343917 592344048 2.020000e-42 183.0
15 TraesCS7D01G428200 chr7B 88.889 81 9 0 1 81 592343641 592343721 2.090000e-17 100.0
16 TraesCS7D01G428200 chr4A 80.138 1012 125 44 1353 2327 211002256 211001284 0.000000e+00 686.0
17 TraesCS7D01G428200 chr4A 82.683 410 44 13 950 1336 211003016 211002611 4.060000e-89 339.0
18 TraesCS7D01G428200 chr4A 86.802 197 18 5 2837 3028 211000964 211000771 2.570000e-51 213.0
19 TraesCS7D01G428200 chr4A 90.441 136 12 1 3070 3204 403270858 403270723 9.380000e-41 178.0
20 TraesCS7D01G428200 chr4D 82.765 528 55 17 1741 2260 291735189 291735688 3.900000e-119 438.0
21 TraesCS7D01G428200 chr4D 81.416 339 36 13 276 600 291726180 291726505 5.450000e-63 252.0
22 TraesCS7D01G428200 chr4D 85.922 206 19 6 2834 3034 291735993 291736193 9.240000e-51 211.0
23 TraesCS7D01G428200 chr4D 94.400 125 7 0 1175 1299 291734896 291735020 3.350000e-45 193.0
24 TraesCS7D01G428200 chr4D 79.012 162 18 6 787 933 291734527 291734687 2.700000e-16 97.1
25 TraesCS7D01G428200 chr4B 87.097 217 27 1 2040 2255 273689877 273689661 9.110000e-61 244.0
26 TraesCS7D01G428200 chr4B 86.735 196 16 7 2837 3026 273689325 273689134 3.320000e-50 209.0
27 TraesCS7D01G428200 chr4B 79.037 353 34 14 787 1113 273696133 273695795 4.300000e-49 206.0
28 TraesCS7D01G428200 chr2B 91.566 166 11 3 1 165 655987505 655987668 3.300000e-55 226.0
29 TraesCS7D01G428200 chr3D 96.923 130 3 1 3073 3202 225807594 225807466 1.990000e-52 217.0
30 TraesCS7D01G428200 chr3D 94.737 133 5 2 3073 3205 349899699 349899569 4.300000e-49 206.0
31 TraesCS7D01G428200 chr3D 91.803 61 3 2 2654 2713 474976610 474976669 2.100000e-12 84.2
32 TraesCS7D01G428200 chr2A 89.634 164 15 1 1 164 691845605 691845766 1.200000e-49 207.0
33 TraesCS7D01G428200 chr2A 89.888 89 8 1 2745 2832 4969448 4969536 2.680000e-21 113.0
34 TraesCS7D01G428200 chr2A 90.698 86 6 2 2749 2832 593655994 593655909 2.680000e-21 113.0
35 TraesCS7D01G428200 chr3A 94.656 131 7 0 3073 3203 735150074 735149944 1.550000e-48 204.0
36 TraesCS7D01G428200 chr3A 89.535 86 8 1 2747 2831 38254388 38254473 1.250000e-19 108.0
37 TraesCS7D01G428200 chr3B 92.537 134 10 0 3070 3203 598987614 598987747 3.350000e-45 193.0
38 TraesCS7D01G428200 chr3B 89.773 88 8 1 2746 2832 680423295 680423382 9.640000e-21 111.0
39 TraesCS7D01G428200 chr3B 89.412 85 8 1 2749 2832 126580149 126580065 4.490000e-19 106.0
40 TraesCS7D01G428200 chr5B 94.167 120 7 0 3070 3189 208583416 208583535 2.020000e-42 183.0
41 TraesCS7D01G428200 chr2D 90.000 90 8 1 2745 2833 557267178 557267267 7.460000e-22 115.0
42 TraesCS7D01G428200 chr1D 89.773 88 8 1 2747 2833 77013367 77013454 9.640000e-21 111.0
43 TraesCS7D01G428200 chr1D 93.220 59 2 2 2657 2714 381152671 381152614 5.850000e-13 86.1
44 TraesCS7D01G428200 chr1D 91.667 60 5 0 2655 2714 409914533 409914474 2.100000e-12 84.2
45 TraesCS7D01G428200 chr1D 92.982 57 2 2 2657 2712 154019327 154019382 7.560000e-12 82.4
46 TraesCS7D01G428200 chr1B 89.412 85 8 1 2747 2830 120657841 120657925 4.490000e-19 106.0
47 TraesCS7D01G428200 chr1B 96.491 57 0 2 2657 2712 223798218 223798273 3.490000e-15 93.5
48 TraesCS7D01G428200 chr5A 91.667 60 3 2 2654 2712 557345940 557345882 7.560000e-12 82.4
49 TraesCS7D01G428200 chr6A 91.525 59 3 2 2657 2714 250692312 250692255 2.720000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G428200 chr7D 548771944 548775231 3287 False 6072.000000 6072 100.000000 1 3288 1 chr7D.!!$F2 3287
1 TraesCS7D01G428200 chr7A 632545434 632549745 4311 False 1090.250000 3855 91.787000 1 3288 4 chr7A.!!$F2 3287
2 TraesCS7D01G428200 chr7B 591953195 591954883 1688 True 2440.000000 2440 92.967000 867 2533 1 chr7B.!!$R1 1666
3 TraesCS7D01G428200 chr7B 592343641 592346291 2650 False 912.250000 3090 90.509250 1 2658 4 chr7B.!!$F1 2657
4 TraesCS7D01G428200 chr4A 211000771 211003016 2245 True 412.666667 686 83.207667 950 3028 3 chr4A.!!$R2 2078
5 TraesCS7D01G428200 chr4D 291734527 291736193 1666 False 234.775000 438 85.524750 787 3034 4 chr4D.!!$F2 2247
6 TraesCS7D01G428200 chr4B 273689134 273689877 743 True 226.500000 244 86.916000 2040 3026 2 chr4B.!!$R2 986

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 1378 0.026803 GAGCCTATTTTCAGCACGCG 59.973 55.0 3.53 3.53 0.00 6.01 F
602 1922 1.216064 ATAGCATCTGTGGCCTGGAA 58.784 50.0 3.32 0.00 0.00 3.53 F
1429 3166 1.291877 CCTTCAAGAAGTCGGCCACG 61.292 60.0 2.24 0.00 36.72 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 2411 0.178891 AACAAGAGCAGGAGAGGGGA 60.179 55.0 0.00 0.00 0.00 4.81 R
1449 3186 0.249868 TGGTGAAGGCGAGTTGAGTG 60.250 55.0 0.00 0.00 0.00 3.51 R
3135 5012 0.036577 AGAGCAGCTGTTTGATCGCT 60.037 50.0 16.64 2.64 38.47 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 1308 1.680249 GGAGCACCCCATCTCTTTCAC 60.680 57.143 0.00 0.00 0.00 3.18
56 1316 4.006319 CCCCATCTCTTTCACTTCTTCAC 58.994 47.826 0.00 0.00 0.00 3.18
60 1320 2.372172 TCTCTTTCACTTCTTCACCCCC 59.628 50.000 0.00 0.00 0.00 5.40
76 1336 1.221840 CCCCTGTCATCCAAGTCGG 59.778 63.158 0.00 0.00 0.00 4.79
77 1337 1.450312 CCCTGTCATCCAAGTCGGC 60.450 63.158 0.00 0.00 33.14 5.54
78 1338 1.599047 CCTGTCATCCAAGTCGGCT 59.401 57.895 0.00 0.00 33.14 5.52
79 1339 0.824109 CCTGTCATCCAAGTCGGCTA 59.176 55.000 0.00 0.00 33.14 3.93
80 1340 1.414181 CCTGTCATCCAAGTCGGCTAT 59.586 52.381 0.00 0.00 33.14 2.97
81 1341 2.546795 CCTGTCATCCAAGTCGGCTATC 60.547 54.545 0.00 0.00 33.14 2.08
82 1342 2.101415 CTGTCATCCAAGTCGGCTATCA 59.899 50.000 0.00 0.00 33.14 2.15
83 1343 2.700371 TGTCATCCAAGTCGGCTATCAT 59.300 45.455 0.00 0.00 33.14 2.45
84 1344 3.062763 GTCATCCAAGTCGGCTATCATG 58.937 50.000 0.00 0.00 33.14 3.07
85 1345 2.965147 TCATCCAAGTCGGCTATCATGA 59.035 45.455 0.00 0.00 33.14 3.07
86 1346 3.580022 TCATCCAAGTCGGCTATCATGAT 59.420 43.478 13.81 13.81 33.14 2.45
87 1347 4.040829 TCATCCAAGTCGGCTATCATGATT 59.959 41.667 14.65 0.00 33.14 2.57
88 1348 3.995199 TCCAAGTCGGCTATCATGATTC 58.005 45.455 14.65 6.32 33.14 2.52
89 1349 3.643320 TCCAAGTCGGCTATCATGATTCT 59.357 43.478 14.65 0.00 33.14 2.40
90 1350 4.832823 TCCAAGTCGGCTATCATGATTCTA 59.167 41.667 14.65 0.00 33.14 2.10
91 1351 5.047731 TCCAAGTCGGCTATCATGATTCTAG 60.048 44.000 14.65 6.56 33.14 2.43
92 1352 5.167121 CAAGTCGGCTATCATGATTCTAGG 58.833 45.833 14.65 0.60 0.00 3.02
93 1353 3.766591 AGTCGGCTATCATGATTCTAGGG 59.233 47.826 14.65 0.00 0.00 3.53
94 1354 3.099905 TCGGCTATCATGATTCTAGGGG 58.900 50.000 14.65 0.00 0.00 4.79
95 1355 2.419297 CGGCTATCATGATTCTAGGGGC 60.419 54.545 14.65 8.73 0.00 5.80
96 1356 2.843113 GGCTATCATGATTCTAGGGGCT 59.157 50.000 14.65 0.00 0.00 5.19
97 1357 3.265479 GGCTATCATGATTCTAGGGGCTT 59.735 47.826 14.65 0.00 0.00 4.35
98 1358 4.263683 GGCTATCATGATTCTAGGGGCTTT 60.264 45.833 14.65 0.00 0.00 3.51
99 1359 4.699257 GCTATCATGATTCTAGGGGCTTTG 59.301 45.833 14.65 0.00 0.00 2.77
100 1360 5.513788 GCTATCATGATTCTAGGGGCTTTGA 60.514 44.000 14.65 0.00 0.00 2.69
101 1361 4.428294 TCATGATTCTAGGGGCTTTGAG 57.572 45.455 0.00 0.00 0.00 3.02
118 1378 0.026803 GAGCCTATTTTCAGCACGCG 59.973 55.000 3.53 3.53 0.00 6.01
147 1407 8.385898 AGTTTGACTGACGGTGATTAATTTAA 57.614 30.769 0.00 0.00 0.00 1.52
176 1436 4.950050 AGGTGTGAGATAATTAAGCTCGG 58.050 43.478 11.72 0.00 0.00 4.63
177 1437 3.495001 GGTGTGAGATAATTAAGCTCGGC 59.505 47.826 11.72 8.84 0.00 5.54
261 1521 3.929094 GCATTTGCTTTTCCTCAATGGA 58.071 40.909 0.00 0.00 39.69 3.41
336 1654 7.191551 CACAATATAAAATCAGCTGGTCAGTG 58.808 38.462 15.13 2.93 0.00 3.66
402 1720 2.700722 TGTGGTTGCAGTTACTGACA 57.299 45.000 17.40 10.66 32.44 3.58
440 1758 1.681264 CCAACAAAGGAAAGGCGTTCT 59.319 47.619 12.77 0.00 36.40 3.01
602 1922 1.216064 ATAGCATCTGTGGCCTGGAA 58.784 50.000 3.32 0.00 0.00 3.53
730 2058 2.170397 TGAAGTGAAGCACCTGAACTGA 59.830 45.455 0.00 0.00 34.49 3.41
775 2104 2.288457 CGAGTCTCACTTCTTGGCTTCA 60.288 50.000 0.00 0.00 0.00 3.02
1048 2411 1.410517 CGGCATCATCTCACACCTACT 59.589 52.381 0.00 0.00 0.00 2.57
1320 2719 1.686325 TAGGGCTTGACCAGATCGCC 61.686 60.000 0.00 0.00 42.05 5.54
1429 3166 1.291877 CCTTCAAGAAGTCGGCCACG 61.292 60.000 2.24 0.00 36.72 4.94
1447 3184 3.186409 CCACGTGAGGTGTGTAAAAGATG 59.814 47.826 19.30 0.00 45.52 2.90
1448 3185 3.186409 CACGTGAGGTGTGTAAAAGATGG 59.814 47.826 10.90 0.00 41.89 3.51
1449 3186 2.159627 CGTGAGGTGTGTAAAAGATGGC 59.840 50.000 0.00 0.00 0.00 4.40
1450 3187 3.146066 GTGAGGTGTGTAAAAGATGGCA 58.854 45.455 0.00 0.00 0.00 4.92
1451 3188 3.058224 GTGAGGTGTGTAAAAGATGGCAC 60.058 47.826 0.00 0.00 0.00 5.01
1452 3189 3.181445 TGAGGTGTGTAAAAGATGGCACT 60.181 43.478 0.00 0.00 33.44 4.40
1453 3190 3.412386 AGGTGTGTAAAAGATGGCACTC 58.588 45.455 0.00 0.00 33.44 3.51
1455 3192 3.568007 GGTGTGTAAAAGATGGCACTCAA 59.432 43.478 0.00 0.00 33.44 3.02
1459 3202 3.745975 TGTAAAAGATGGCACTCAACTCG 59.254 43.478 0.00 0.00 0.00 4.18
1472 3215 2.554032 CTCAACTCGCCTTCACCATTTT 59.446 45.455 0.00 0.00 0.00 1.82
1480 3223 2.412770 GCCTTCACCATTTTGAATTGCG 59.587 45.455 0.00 0.00 34.96 4.85
1487 3254 4.863689 CACCATTTTGAATTGCGCTTCATA 59.136 37.500 9.73 3.58 35.20 2.15
1512 3279 5.705441 CACTTGGATAGAAGCAAGTTGGTAA 59.295 40.000 8.21 0.00 35.93 2.85
1529 3297 7.605449 AGTTGGTAATGAAAATCCATGTCTTG 58.395 34.615 0.00 0.00 0.00 3.02
1536 3304 3.302365 AAATCCATGTCTTGCGGTTTG 57.698 42.857 0.00 0.00 0.00 2.93
1542 3310 3.443037 CATGTCTTGCGGTTTGTTTTCA 58.557 40.909 0.00 0.00 0.00 2.69
1546 3314 3.862845 GTCTTGCGGTTTGTTTTCATTGT 59.137 39.130 0.00 0.00 0.00 2.71
1784 3558 4.741676 ACGAGACTAAACACGTAACCAAAG 59.258 41.667 0.00 0.00 35.64 2.77
1816 3590 0.248336 CATCGTGTCCATGCACATGC 60.248 55.000 3.95 0.00 39.19 4.06
2008 3782 2.994995 ACCGACCGCATCTCCACA 60.995 61.111 0.00 0.00 0.00 4.17
2134 3923 2.113433 GGACTCGCTCTCCTACGCA 61.113 63.158 0.00 0.00 0.00 5.24
2262 4052 3.033184 CAAGCCGTTTGCAGCTGA 58.967 55.556 20.43 0.00 44.83 4.26
2273 4063 1.055849 TGCAGCTGAGGGTAACAAGA 58.944 50.000 20.43 0.00 39.74 3.02
2329 4125 2.537560 GCGTCAATCATCGGCCTGG 61.538 63.158 0.00 0.00 0.00 4.45
2408 4204 0.465460 TTTGTGCGGCTTCTGAGGTT 60.465 50.000 0.00 0.00 0.00 3.50
2409 4205 1.165907 TTGTGCGGCTTCTGAGGTTG 61.166 55.000 0.00 0.00 0.00 3.77
2411 4207 1.301716 TGCGGCTTCTGAGGTTGTC 60.302 57.895 0.00 0.00 0.00 3.18
2502 4332 5.854866 GTGTAAGAAATTGGCTTAAACGTCC 59.145 40.000 0.00 0.00 29.31 4.79
2504 4334 5.722021 AAGAAATTGGCTTAAACGTCCAT 57.278 34.783 0.00 0.00 0.00 3.41
2540 4370 7.132213 CAGAACGTACATTTATTTGCTATGGG 58.868 38.462 0.00 0.00 0.00 4.00
2551 4381 5.813080 ATTTGCTATGGGTTTTACTCGAC 57.187 39.130 0.00 0.00 0.00 4.20
2661 4492 9.600646 CATGTTCTACTCATATTGTACTACTCG 57.399 37.037 0.00 0.00 0.00 4.18
2663 4494 6.798315 TCTACTCATATTGTACTACTCGCC 57.202 41.667 0.00 0.00 0.00 5.54
2664 4495 6.531923 TCTACTCATATTGTACTACTCGCCT 58.468 40.000 0.00 0.00 0.00 5.52
2670 4501 0.745845 TGTACTACTCGCCTCGTCCC 60.746 60.000 0.00 0.00 0.00 4.46
2671 4502 0.745845 GTACTACTCGCCTCGTCCCA 60.746 60.000 0.00 0.00 0.00 4.37
2672 4503 0.182061 TACTACTCGCCTCGTCCCAT 59.818 55.000 0.00 0.00 0.00 4.00
2673 4504 0.182061 ACTACTCGCCTCGTCCCATA 59.818 55.000 0.00 0.00 0.00 2.74
2674 4505 1.315690 CTACTCGCCTCGTCCCATAA 58.684 55.000 0.00 0.00 0.00 1.90
2675 4506 1.887198 CTACTCGCCTCGTCCCATAAT 59.113 52.381 0.00 0.00 0.00 1.28
2676 4507 1.991121 ACTCGCCTCGTCCCATAATA 58.009 50.000 0.00 0.00 0.00 0.98
2677 4508 2.526432 ACTCGCCTCGTCCCATAATAT 58.474 47.619 0.00 0.00 0.00 1.28
2679 4510 4.084287 ACTCGCCTCGTCCCATAATATAA 58.916 43.478 0.00 0.00 0.00 0.98
2680 4511 4.158025 ACTCGCCTCGTCCCATAATATAAG 59.842 45.833 0.00 0.00 0.00 1.73
2681 4512 4.338012 TCGCCTCGTCCCATAATATAAGA 58.662 43.478 0.00 0.00 0.00 2.10
2685 4516 6.407202 GCCTCGTCCCATAATATAAGAATGT 58.593 40.000 0.00 0.00 0.00 2.71
2686 4517 6.879458 GCCTCGTCCCATAATATAAGAATGTT 59.121 38.462 0.00 0.00 0.00 2.71
2687 4518 7.390718 GCCTCGTCCCATAATATAAGAATGTTT 59.609 37.037 0.00 0.00 0.00 2.83
2741 4578 5.308825 AGTAAAATTAGGGCTCCATCATCG 58.691 41.667 0.00 0.00 0.00 3.84
2748 4585 3.454858 AGGGCTCCATCATCGGTATAAT 58.545 45.455 0.00 0.00 0.00 1.28
2750 4587 4.406003 AGGGCTCCATCATCGGTATAATAC 59.594 45.833 0.00 0.00 0.00 1.89
2752 4589 5.104900 GGGCTCCATCATCGGTATAATACTT 60.105 44.000 0.00 0.00 0.00 2.24
2753 4590 6.043411 GGCTCCATCATCGGTATAATACTTC 58.957 44.000 0.00 0.00 0.00 3.01
2754 4591 6.043411 GCTCCATCATCGGTATAATACTTCC 58.957 44.000 0.00 0.00 0.00 3.46
2756 4593 7.579723 GCTCCATCATCGGTATAATACTTCCTT 60.580 40.741 0.00 0.00 0.00 3.36
2798 4635 1.795768 TTTGACGCTGTCATGGACTC 58.204 50.000 11.23 0.00 42.40 3.36
2799 4636 0.969149 TTGACGCTGTCATGGACTCT 59.031 50.000 11.23 0.00 42.40 3.24
2801 4638 2.167662 TGACGCTGTCATGGACTCTAA 58.832 47.619 7.20 0.00 37.67 2.10
2804 4641 3.994392 GACGCTGTCATGGACTCTAAAAA 59.006 43.478 0.00 0.00 33.15 1.94
2805 4642 3.746492 ACGCTGTCATGGACTCTAAAAAC 59.254 43.478 0.00 0.00 33.15 2.43
2806 4643 3.181530 CGCTGTCATGGACTCTAAAAACG 60.182 47.826 0.00 0.00 33.15 3.60
2807 4644 3.746492 GCTGTCATGGACTCTAAAAACGT 59.254 43.478 0.00 0.00 33.15 3.99
2809 4646 5.209818 TGTCATGGACTCTAAAAACGTCT 57.790 39.130 0.00 0.00 33.15 4.18
2810 4647 5.607477 TGTCATGGACTCTAAAAACGTCTT 58.393 37.500 0.00 0.00 33.15 3.01
2811 4648 6.751157 TGTCATGGACTCTAAAAACGTCTTA 58.249 36.000 0.00 0.00 33.15 2.10
2812 4649 7.383687 TGTCATGGACTCTAAAAACGTCTTAT 58.616 34.615 0.00 0.00 33.15 1.73
2813 4650 8.525316 TGTCATGGACTCTAAAAACGTCTTATA 58.475 33.333 0.00 0.00 33.15 0.98
2815 4652 9.932207 TCATGGACTCTAAAAACGTCTTATAAA 57.068 29.630 0.00 0.00 0.00 1.40
2818 4655 9.768662 TGGACTCTAAAAACGTCTTATAAAAGT 57.231 29.630 0.00 0.00 34.13 2.66
2827 4664 8.999220 AAACGTCTTATAAAAGTTAGAGAGGG 57.001 34.615 0.00 0.00 34.13 4.30
2829 4666 7.998580 ACGTCTTATAAAAGTTAGAGAGGGAG 58.001 38.462 0.00 0.00 34.13 4.30
2830 4667 7.614974 ACGTCTTATAAAAGTTAGAGAGGGAGT 59.385 37.037 0.00 0.00 34.13 3.85
2831 4668 9.118300 CGTCTTATAAAAGTTAGAGAGGGAGTA 57.882 37.037 0.00 0.00 34.13 2.59
2874 4747 9.167311 CAAGTCTTAGCTTCCATAGTACAAAAT 57.833 33.333 0.00 0.00 0.00 1.82
2933 4806 6.890268 AGAAAGAAACAAGTTCCAGGTAAACT 59.110 34.615 0.00 0.00 38.59 2.66
2935 4808 7.803279 AAGAAACAAGTTCCAGGTAAACTAG 57.197 36.000 0.00 0.00 35.96 2.57
2971 4848 1.152989 GAGCTGCTTGATCTCTGCCG 61.153 60.000 2.53 0.00 0.00 5.69
2992 4869 3.972971 CTCTCCAGCCACAGCCTGC 62.973 68.421 0.00 0.00 41.25 4.85
3032 4909 2.890311 CACCCTGCCAAAACAGATAACA 59.110 45.455 0.00 0.00 40.25 2.41
3066 4943 1.269448 GAAAGGGTGAAAGCGCATCAA 59.731 47.619 16.18 0.43 33.03 2.57
3067 4944 1.327303 AAGGGTGAAAGCGCATCAAA 58.673 45.000 16.18 0.00 33.03 2.69
3068 4945 0.598065 AGGGTGAAAGCGCATCAAAC 59.402 50.000 16.18 12.29 33.03 2.93
3069 4946 0.598065 GGGTGAAAGCGCATCAAACT 59.402 50.000 16.18 0.00 33.03 2.66
3070 4947 1.810151 GGGTGAAAGCGCATCAAACTA 59.190 47.619 16.18 0.00 33.03 2.24
3071 4948 2.159517 GGGTGAAAGCGCATCAAACTAG 60.160 50.000 16.18 0.00 33.03 2.57
3072 4949 2.159517 GGTGAAAGCGCATCAAACTAGG 60.160 50.000 16.18 0.00 0.00 3.02
3073 4950 2.083774 TGAAAGCGCATCAAACTAGGG 58.916 47.619 11.47 0.00 0.00 3.53
3074 4951 0.811281 AAAGCGCATCAAACTAGGGC 59.189 50.000 11.47 0.00 40.97 5.19
3075 4952 1.032114 AAGCGCATCAAACTAGGGCC 61.032 55.000 11.47 0.00 41.51 5.80
3076 4953 2.823829 GCGCATCAAACTAGGGCCG 61.824 63.158 0.30 0.00 35.47 6.13
3077 4954 2.823829 CGCATCAAACTAGGGCCGC 61.824 63.158 0.00 0.00 0.00 6.53
3078 4955 2.823829 GCATCAAACTAGGGCCGCG 61.824 63.158 0.00 0.00 0.00 6.46
3079 4956 1.449601 CATCAAACTAGGGCCGCGT 60.450 57.895 4.92 0.00 0.00 6.01
3080 4957 1.024579 CATCAAACTAGGGCCGCGTT 61.025 55.000 4.92 7.54 0.00 4.84
3081 4958 0.743345 ATCAAACTAGGGCCGCGTTC 60.743 55.000 4.92 0.00 0.00 3.95
3082 4959 2.433664 AAACTAGGGCCGCGTTCG 60.434 61.111 4.92 0.00 0.00 3.95
3092 4969 2.048503 CGCGTTCGGTTTCCCTCT 60.049 61.111 0.00 0.00 0.00 3.69
3093 4970 2.380410 CGCGTTCGGTTTCCCTCTG 61.380 63.158 0.00 0.00 0.00 3.35
3094 4971 2.677979 GCGTTCGGTTTCCCTCTGC 61.678 63.158 0.00 0.00 0.00 4.26
3095 4972 1.004918 CGTTCGGTTTCCCTCTGCT 60.005 57.895 0.00 0.00 0.00 4.24
3096 4973 1.014564 CGTTCGGTTTCCCTCTGCTC 61.015 60.000 0.00 0.00 0.00 4.26
3097 4974 0.673956 GTTCGGTTTCCCTCTGCTCC 60.674 60.000 0.00 0.00 0.00 4.70
3098 4975 1.125093 TTCGGTTTCCCTCTGCTCCA 61.125 55.000 0.00 0.00 0.00 3.86
3099 4976 0.909610 TCGGTTTCCCTCTGCTCCAT 60.910 55.000 0.00 0.00 0.00 3.41
3100 4977 0.745845 CGGTTTCCCTCTGCTCCATG 60.746 60.000 0.00 0.00 0.00 3.66
3101 4978 0.394899 GGTTTCCCTCTGCTCCATGG 60.395 60.000 4.97 4.97 0.00 3.66
3102 4979 1.034292 GTTTCCCTCTGCTCCATGGC 61.034 60.000 6.96 0.00 0.00 4.40
3103 4980 1.210204 TTTCCCTCTGCTCCATGGCT 61.210 55.000 6.96 0.00 0.00 4.75
3104 4981 1.630126 TTCCCTCTGCTCCATGGCTC 61.630 60.000 6.96 1.05 0.00 4.70
3105 4982 2.509916 CCTCTGCTCCATGGCTCC 59.490 66.667 6.96 0.00 0.00 4.70
3106 4983 2.108566 CTCTGCTCCATGGCTCCG 59.891 66.667 6.96 0.00 0.00 4.63
3107 4984 4.166888 TCTGCTCCATGGCTCCGC 62.167 66.667 6.96 7.51 0.00 5.54
3108 4985 4.172512 CTGCTCCATGGCTCCGCT 62.173 66.667 6.96 0.00 0.00 5.52
3109 4986 4.166888 TGCTCCATGGCTCCGCTC 62.167 66.667 6.96 0.00 0.00 5.03
3110 4987 4.925861 GCTCCATGGCTCCGCTCC 62.926 72.222 6.96 0.00 0.00 4.70
3111 4988 4.247380 CTCCATGGCTCCGCTCCC 62.247 72.222 6.96 0.00 0.00 4.30
3123 5000 3.459063 GCTCCCGGAGCGGTAGTT 61.459 66.667 23.58 0.00 45.85 2.24
3124 5001 2.123428 GCTCCCGGAGCGGTAGTTA 61.123 63.158 23.58 0.00 45.85 2.24
3125 5002 1.669999 GCTCCCGGAGCGGTAGTTAA 61.670 60.000 23.58 0.00 45.85 2.01
3126 5003 0.819582 CTCCCGGAGCGGTAGTTAAA 59.180 55.000 0.73 0.00 46.80 1.52
3127 5004 1.205417 CTCCCGGAGCGGTAGTTAAAA 59.795 52.381 0.73 0.00 46.80 1.52
3128 5005 1.832998 TCCCGGAGCGGTAGTTAAAAT 59.167 47.619 0.73 0.00 46.80 1.82
3129 5006 3.030291 TCCCGGAGCGGTAGTTAAAATA 58.970 45.455 0.73 0.00 46.80 1.40
3130 5007 3.126073 CCCGGAGCGGTAGTTAAAATAC 58.874 50.000 0.73 0.00 46.80 1.89
3131 5008 3.181472 CCCGGAGCGGTAGTTAAAATACT 60.181 47.826 0.73 0.00 46.80 2.12
3132 5009 4.436332 CCGGAGCGGTAGTTAAAATACTT 58.564 43.478 0.00 0.00 42.73 2.24
3133 5010 4.269363 CCGGAGCGGTAGTTAAAATACTTG 59.731 45.833 0.00 0.00 42.73 3.16
3134 5011 4.269363 CGGAGCGGTAGTTAAAATACTTGG 59.731 45.833 0.00 0.00 0.00 3.61
3135 5012 5.422145 GGAGCGGTAGTTAAAATACTTGGA 58.578 41.667 0.00 0.00 0.00 3.53
3136 5013 5.522824 GGAGCGGTAGTTAAAATACTTGGAG 59.477 44.000 0.00 0.00 0.00 3.86
3137 5014 4.874396 AGCGGTAGTTAAAATACTTGGAGC 59.126 41.667 0.00 0.00 0.00 4.70
3138 5015 4.260091 GCGGTAGTTAAAATACTTGGAGCG 60.260 45.833 0.00 0.00 31.73 5.03
3139 5016 5.104374 CGGTAGTTAAAATACTTGGAGCGA 58.896 41.667 0.00 0.00 30.71 4.93
3140 5017 5.751990 CGGTAGTTAAAATACTTGGAGCGAT 59.248 40.000 0.00 0.00 30.71 4.58
3141 5018 6.074463 CGGTAGTTAAAATACTTGGAGCGATC 60.074 42.308 0.00 0.00 30.71 3.69
3142 5019 6.759827 GGTAGTTAAAATACTTGGAGCGATCA 59.240 38.462 1.84 0.00 0.00 2.92
3143 5020 7.279313 GGTAGTTAAAATACTTGGAGCGATCAA 59.721 37.037 1.84 0.00 0.00 2.57
3144 5021 7.681939 AGTTAAAATACTTGGAGCGATCAAA 57.318 32.000 1.84 0.00 0.00 2.69
3145 5022 7.527457 AGTTAAAATACTTGGAGCGATCAAAC 58.473 34.615 1.84 0.00 0.00 2.93
3146 5023 5.957842 AAAATACTTGGAGCGATCAAACA 57.042 34.783 1.84 0.00 0.00 2.83
3147 5024 5.551760 AAATACTTGGAGCGATCAAACAG 57.448 39.130 1.84 0.00 0.00 3.16
3148 5025 1.160137 ACTTGGAGCGATCAAACAGC 58.840 50.000 1.84 0.00 0.00 4.40
3149 5026 1.271054 ACTTGGAGCGATCAAACAGCT 60.271 47.619 1.84 0.00 44.80 4.24
3150 5027 1.129998 CTTGGAGCGATCAAACAGCTG 59.870 52.381 13.48 13.48 41.84 4.24
3151 5028 1.427020 GGAGCGATCAAACAGCTGC 59.573 57.895 15.27 0.00 41.84 5.25
3152 5029 1.023513 GGAGCGATCAAACAGCTGCT 61.024 55.000 15.27 1.28 44.26 4.24
3153 5030 0.373024 GAGCGATCAAACAGCTGCTC 59.627 55.000 15.27 8.21 41.84 4.26
3154 5031 0.036577 AGCGATCAAACAGCTGCTCT 60.037 50.000 15.27 0.00 40.07 4.09
3156 5033 0.096628 CGATCAAACAGCTGCTCTGC 59.903 55.000 15.27 0.00 46.76 4.26
3157 5034 1.162698 GATCAAACAGCTGCTCTGCA 58.837 50.000 15.27 0.00 46.76 4.41
3172 5049 5.737860 TGCTCTGCAGATTCTAGAATTTGA 58.262 37.500 30.38 18.14 35.60 2.69
3173 5050 6.175471 TGCTCTGCAGATTCTAGAATTTGAA 58.825 36.000 30.38 22.85 35.60 2.69
3174 5051 6.315642 TGCTCTGCAGATTCTAGAATTTGAAG 59.684 38.462 30.38 28.88 38.98 3.02
3175 5052 6.238429 GCTCTGCAGATTCTAGAATTTGAAGG 60.238 42.308 30.32 24.07 38.46 3.46
3176 5053 6.950842 TCTGCAGATTCTAGAATTTGAAGGA 58.049 36.000 30.32 22.35 38.46 3.36
3177 5054 7.046652 TCTGCAGATTCTAGAATTTGAAGGAG 58.953 38.462 30.32 21.58 38.46 3.69
3178 5055 6.715280 TGCAGATTCTAGAATTTGAAGGAGT 58.285 36.000 30.38 4.16 35.60 3.85
3179 5056 7.170965 TGCAGATTCTAGAATTTGAAGGAGTT 58.829 34.615 30.38 3.67 35.60 3.01
3180 5057 7.120285 TGCAGATTCTAGAATTTGAAGGAGTTG 59.880 37.037 30.38 13.35 35.60 3.16
3181 5058 7.414984 GCAGATTCTAGAATTTGAAGGAGTTGG 60.415 40.741 30.38 8.58 35.60 3.77
3182 5059 7.609532 CAGATTCTAGAATTTGAAGGAGTTGGT 59.390 37.037 24.80 0.00 35.60 3.67
3183 5060 7.609532 AGATTCTAGAATTTGAAGGAGTTGGTG 59.390 37.037 18.88 0.00 0.00 4.17
3184 5061 5.560724 TCTAGAATTTGAAGGAGTTGGTGG 58.439 41.667 0.00 0.00 0.00 4.61
3185 5062 4.453480 AGAATTTGAAGGAGTTGGTGGA 57.547 40.909 0.00 0.00 0.00 4.02
3186 5063 4.145052 AGAATTTGAAGGAGTTGGTGGAC 58.855 43.478 0.00 0.00 0.00 4.02
3187 5064 3.884037 ATTTGAAGGAGTTGGTGGACT 57.116 42.857 0.00 0.00 0.00 3.85
3188 5065 2.638480 TTGAAGGAGTTGGTGGACTG 57.362 50.000 0.00 0.00 0.00 3.51
3189 5066 0.108585 TGAAGGAGTTGGTGGACTGC 59.891 55.000 0.00 0.00 38.16 4.40
3190 5067 0.606673 GAAGGAGTTGGTGGACTGCC 60.607 60.000 0.00 0.00 38.60 4.85
3191 5068 1.352622 AAGGAGTTGGTGGACTGCCA 61.353 55.000 0.00 0.00 43.47 4.92
3202 5079 4.323477 ACTGCCAAACGCGCCCTA 62.323 61.111 5.73 0.00 42.08 3.53
3203 5080 3.499737 CTGCCAAACGCGCCCTAG 61.500 66.667 5.73 0.00 42.08 3.02
3204 5081 4.323477 TGCCAAACGCGCCCTAGT 62.323 61.111 5.73 0.00 42.08 2.57
3205 5082 2.125431 GCCAAACGCGCCCTAGTA 60.125 61.111 5.73 0.00 0.00 1.82
3206 5083 2.458610 GCCAAACGCGCCCTAGTAC 61.459 63.158 5.73 0.00 0.00 2.73
3207 5084 1.217244 CCAAACGCGCCCTAGTACT 59.783 57.895 5.73 0.00 0.00 2.73
3208 5085 0.457035 CCAAACGCGCCCTAGTACTA 59.543 55.000 5.73 1.89 0.00 1.82
3209 5086 1.068127 CCAAACGCGCCCTAGTACTAT 59.932 52.381 5.73 0.00 0.00 2.12
3210 5087 2.124903 CAAACGCGCCCTAGTACTATG 58.875 52.381 5.73 0.21 0.00 2.23
3211 5088 0.672342 AACGCGCCCTAGTACTATGG 59.328 55.000 17.42 17.42 0.00 2.74
3212 5089 0.179009 ACGCGCCCTAGTACTATGGA 60.179 55.000 23.94 0.00 0.00 3.41
3213 5090 0.522180 CGCGCCCTAGTACTATGGAG 59.478 60.000 23.94 21.47 0.00 3.86
3214 5091 0.889306 GCGCCCTAGTACTATGGAGG 59.111 60.000 23.94 14.12 0.00 4.30
3215 5092 1.822457 GCGCCCTAGTACTATGGAGGT 60.822 57.143 23.94 0.00 0.00 3.85
3216 5093 2.161030 CGCCCTAGTACTATGGAGGTC 58.839 57.143 23.94 4.58 0.00 3.85
3217 5094 2.488528 CGCCCTAGTACTATGGAGGTCA 60.489 54.545 23.94 0.00 0.00 4.02
3218 5095 2.892215 GCCCTAGTACTATGGAGGTCAC 59.108 54.545 23.94 5.27 0.00 3.67
3219 5096 3.147629 CCCTAGTACTATGGAGGTCACG 58.852 54.545 16.94 0.00 0.00 4.35
3220 5097 3.181447 CCCTAGTACTATGGAGGTCACGA 60.181 52.174 16.94 0.00 0.00 4.35
3221 5098 4.458397 CCTAGTACTATGGAGGTCACGAA 58.542 47.826 2.33 0.00 0.00 3.85
3222 5099 4.515944 CCTAGTACTATGGAGGTCACGAAG 59.484 50.000 2.33 0.00 0.00 3.79
3223 5100 2.688958 AGTACTATGGAGGTCACGAAGC 59.311 50.000 0.00 0.00 0.00 3.86
3224 5101 1.557099 ACTATGGAGGTCACGAAGCA 58.443 50.000 0.00 0.00 0.00 3.91
3225 5102 1.478510 ACTATGGAGGTCACGAAGCAG 59.521 52.381 0.00 0.00 0.00 4.24
3226 5103 0.175760 TATGGAGGTCACGAAGCAGC 59.824 55.000 0.00 0.00 0.00 5.25
3227 5104 1.548357 ATGGAGGTCACGAAGCAGCT 61.548 55.000 0.00 0.00 0.00 4.24
3228 5105 1.739562 GGAGGTCACGAAGCAGCTG 60.740 63.158 10.11 10.11 0.00 4.24
3229 5106 1.739562 GAGGTCACGAAGCAGCTGG 60.740 63.158 17.12 0.31 0.00 4.85
3230 5107 2.159819 GAGGTCACGAAGCAGCTGGA 62.160 60.000 17.12 0.00 0.00 3.86
3231 5108 1.301716 GGTCACGAAGCAGCTGGAA 60.302 57.895 17.12 0.00 0.00 3.53
3232 5109 0.884704 GGTCACGAAGCAGCTGGAAA 60.885 55.000 17.12 0.00 0.00 3.13
3233 5110 1.160137 GTCACGAAGCAGCTGGAAAT 58.840 50.000 17.12 0.00 0.00 2.17
3234 5111 1.129437 GTCACGAAGCAGCTGGAAATC 59.871 52.381 17.12 0.00 0.00 2.17
3235 5112 1.002430 TCACGAAGCAGCTGGAAATCT 59.998 47.619 17.12 0.00 0.00 2.40
3236 5113 1.129998 CACGAAGCAGCTGGAAATCTG 59.870 52.381 17.12 0.00 0.00 2.90
3237 5114 0.731417 CGAAGCAGCTGGAAATCTGG 59.269 55.000 17.12 0.00 0.00 3.86
3238 5115 1.676916 CGAAGCAGCTGGAAATCTGGA 60.677 52.381 17.12 0.00 0.00 3.86
3239 5116 2.440409 GAAGCAGCTGGAAATCTGGAA 58.560 47.619 17.12 0.00 0.00 3.53
3240 5117 2.822707 AGCAGCTGGAAATCTGGAAT 57.177 45.000 17.12 0.00 0.00 3.01
3241 5118 3.097342 AGCAGCTGGAAATCTGGAATT 57.903 42.857 17.12 0.00 0.00 2.17
3242 5119 2.758979 AGCAGCTGGAAATCTGGAATTG 59.241 45.455 17.12 0.00 0.00 2.32
3243 5120 2.737679 GCAGCTGGAAATCTGGAATTGC 60.738 50.000 17.12 0.00 0.00 3.56
3244 5121 2.494471 CAGCTGGAAATCTGGAATTGCA 59.506 45.455 5.57 0.00 0.00 4.08
3245 5122 3.056393 CAGCTGGAAATCTGGAATTGCAA 60.056 43.478 5.57 0.00 0.00 4.08
3246 5123 3.579586 AGCTGGAAATCTGGAATTGCAAA 59.420 39.130 1.71 0.00 0.00 3.68
3247 5124 3.930848 GCTGGAAATCTGGAATTGCAAAG 59.069 43.478 1.71 0.00 0.00 2.77
3248 5125 4.501071 CTGGAAATCTGGAATTGCAAAGG 58.499 43.478 1.71 0.00 0.00 3.11
3249 5126 4.158786 TGGAAATCTGGAATTGCAAAGGA 58.841 39.130 1.71 0.00 0.00 3.36
3250 5127 4.221262 TGGAAATCTGGAATTGCAAAGGAG 59.779 41.667 1.71 0.00 0.00 3.69
3251 5128 3.881937 AATCTGGAATTGCAAAGGAGC 57.118 42.857 1.71 0.00 0.00 4.70
3252 5129 2.291209 TCTGGAATTGCAAAGGAGCA 57.709 45.000 1.71 0.00 43.99 4.26
3262 5139 4.935352 TGCAAAGGAGCAACTTAATTGT 57.065 36.364 0.00 0.00 42.46 2.71
3263 5140 5.275067 TGCAAAGGAGCAACTTAATTGTT 57.725 34.783 0.00 0.00 42.46 2.83
3265 5142 4.448732 GCAAAGGAGCAACTTAATTGTTGG 59.551 41.667 9.85 0.00 45.19 3.77
3266 5143 5.738783 GCAAAGGAGCAACTTAATTGTTGGA 60.739 40.000 9.85 0.00 45.19 3.53
3267 5144 6.458210 CAAAGGAGCAACTTAATTGTTGGAT 58.542 36.000 9.85 0.00 45.19 3.41
3268 5145 5.649782 AGGAGCAACTTAATTGTTGGATG 57.350 39.130 9.85 0.00 45.19 3.51
3269 5146 4.463891 AGGAGCAACTTAATTGTTGGATGG 59.536 41.667 9.85 0.00 45.19 3.51
3270 5147 4.176271 GAGCAACTTAATTGTTGGATGGC 58.824 43.478 9.85 0.00 45.19 4.40
3271 5148 3.834231 AGCAACTTAATTGTTGGATGGCT 59.166 39.130 9.85 0.00 45.19 4.75
3272 5149 4.284234 AGCAACTTAATTGTTGGATGGCTT 59.716 37.500 9.85 0.00 45.19 4.35
3273 5150 4.389687 GCAACTTAATTGTTGGATGGCTTG 59.610 41.667 9.85 0.00 45.19 4.01
3274 5151 5.540911 CAACTTAATTGTTGGATGGCTTGT 58.459 37.500 1.60 0.00 42.39 3.16
3275 5152 5.806654 ACTTAATTGTTGGATGGCTTGTT 57.193 34.783 0.00 0.00 0.00 2.83
3276 5153 5.540911 ACTTAATTGTTGGATGGCTTGTTG 58.459 37.500 0.00 0.00 0.00 3.33
3277 5154 3.405823 AATTGTTGGATGGCTTGTTGG 57.594 42.857 0.00 0.00 0.00 3.77
3278 5155 2.079170 TTGTTGGATGGCTTGTTGGA 57.921 45.000 0.00 0.00 0.00 3.53
3279 5156 2.079170 TGTTGGATGGCTTGTTGGAA 57.921 45.000 0.00 0.00 0.00 3.53
3280 5157 2.607499 TGTTGGATGGCTTGTTGGAAT 58.393 42.857 0.00 0.00 0.00 3.01
3281 5158 2.971330 TGTTGGATGGCTTGTTGGAATT 59.029 40.909 0.00 0.00 0.00 2.17
3282 5159 3.390639 TGTTGGATGGCTTGTTGGAATTT 59.609 39.130 0.00 0.00 0.00 1.82
3283 5160 4.590647 TGTTGGATGGCTTGTTGGAATTTA 59.409 37.500 0.00 0.00 0.00 1.40
3284 5161 5.070981 TGTTGGATGGCTTGTTGGAATTTAA 59.929 36.000 0.00 0.00 0.00 1.52
3285 5162 5.404466 TGGATGGCTTGTTGGAATTTAAG 57.596 39.130 0.00 0.00 0.00 1.85
3286 5163 4.222588 TGGATGGCTTGTTGGAATTTAAGG 59.777 41.667 0.00 0.00 0.00 2.69
3287 5164 4.222810 GGATGGCTTGTTGGAATTTAAGGT 59.777 41.667 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 1271 2.836262 CTCCAGGTGATCATCTCTTGC 58.164 52.381 5.21 0.00 0.00 4.01
12 1272 2.169978 TGCTCCAGGTGATCATCTCTTG 59.830 50.000 5.21 0.00 0.00 3.02
60 1320 0.824109 TAGCCGACTTGGATGACAGG 59.176 55.000 0.00 0.00 42.00 4.00
76 1336 4.566426 AAGCCCCTAGAATCATGATAGC 57.434 45.455 9.04 4.50 0.00 2.97
77 1337 6.119240 TCAAAGCCCCTAGAATCATGATAG 57.881 41.667 9.04 2.68 0.00 2.08
78 1338 5.513788 GCTCAAAGCCCCTAGAATCATGATA 60.514 44.000 9.04 0.00 34.48 2.15
79 1339 4.749166 GCTCAAAGCCCCTAGAATCATGAT 60.749 45.833 1.18 1.18 34.48 2.45
80 1340 3.434167 GCTCAAAGCCCCTAGAATCATGA 60.434 47.826 0.00 0.00 34.48 3.07
81 1341 2.883386 GCTCAAAGCCCCTAGAATCATG 59.117 50.000 0.00 0.00 34.48 3.07
82 1342 3.220674 GCTCAAAGCCCCTAGAATCAT 57.779 47.619 0.00 0.00 34.48 2.45
83 1343 2.717639 GCTCAAAGCCCCTAGAATCA 57.282 50.000 0.00 0.00 34.48 2.57
94 1354 3.505836 GTGCTGAAAATAGGCTCAAAGC 58.494 45.455 0.00 0.00 41.46 3.51
95 1355 3.751621 CGTGCTGAAAATAGGCTCAAAG 58.248 45.455 0.00 0.00 0.00 2.77
96 1356 2.095263 GCGTGCTGAAAATAGGCTCAAA 60.095 45.455 0.00 0.00 0.00 2.69
97 1357 1.468520 GCGTGCTGAAAATAGGCTCAA 59.531 47.619 0.00 0.00 0.00 3.02
98 1358 1.086696 GCGTGCTGAAAATAGGCTCA 58.913 50.000 0.00 0.00 0.00 4.26
99 1359 0.026803 CGCGTGCTGAAAATAGGCTC 59.973 55.000 0.00 0.00 0.00 4.70
100 1360 0.673644 ACGCGTGCTGAAAATAGGCT 60.674 50.000 12.93 0.00 0.00 4.58
101 1361 0.521242 CACGCGTGCTGAAAATAGGC 60.521 55.000 28.16 0.00 0.00 3.93
118 1378 0.304705 CACCGTCAGTCAAACTGCAC 59.695 55.000 2.18 1.99 45.54 4.57
129 1389 7.812648 TCCAAGTTTAAATTAATCACCGTCAG 58.187 34.615 0.00 0.00 0.00 3.51
132 1392 6.717997 ACCTCCAAGTTTAAATTAATCACCGT 59.282 34.615 0.00 0.00 0.00 4.83
147 1407 6.599638 GCTTAATTATCTCACACCTCCAAGTT 59.400 38.462 0.00 0.00 0.00 2.66
336 1654 6.724263 TGGAATAAATCACGCATGACATAAC 58.276 36.000 0.00 0.00 37.79 1.89
393 1711 5.790593 TCTTCAGGTAACCATGTCAGTAAC 58.209 41.667 0.00 0.00 37.17 2.50
398 1716 5.222027 TGGAAATCTTCAGGTAACCATGTCA 60.222 40.000 0.00 0.00 37.17 3.58
402 1720 5.640147 TGTTGGAAATCTTCAGGTAACCAT 58.360 37.500 0.00 0.00 37.17 3.55
440 1758 3.558321 CCTTGTTCGTAGTTTCCCATGGA 60.558 47.826 15.22 0.00 0.00 3.41
562 1882 6.238814 GCTATTTCTAGGTGAGAGGTGAGTAC 60.239 46.154 0.00 0.00 34.93 2.73
730 2058 5.782047 CAGACAGATCACTTTCTTCAGAGT 58.218 41.667 0.00 0.00 31.73 3.24
858 2193 1.242076 GCTGTGATTGTTGCCTGAGT 58.758 50.000 0.00 0.00 0.00 3.41
1048 2411 0.178891 AACAAGAGCAGGAGAGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
1144 2543 1.672356 CCGAGGTTTCCACTGCCAG 60.672 63.158 0.00 0.00 0.00 4.85
1320 2719 2.358247 CCCAACGTCAGGTTCGGG 60.358 66.667 6.29 4.11 36.49 5.14
1400 3137 2.091885 ACTTCTTGAAGGCCAAACTCCA 60.092 45.455 5.01 0.00 33.76 3.86
1429 3166 3.058224 GTGCCATCTTTTACACACCTCAC 60.058 47.826 0.00 0.00 33.23 3.51
1448 3185 1.569479 GGTGAAGGCGAGTTGAGTGC 61.569 60.000 0.00 0.00 0.00 4.40
1449 3186 0.249868 TGGTGAAGGCGAGTTGAGTG 60.250 55.000 0.00 0.00 0.00 3.51
1450 3187 0.687354 ATGGTGAAGGCGAGTTGAGT 59.313 50.000 0.00 0.00 0.00 3.41
1451 3188 1.813513 AATGGTGAAGGCGAGTTGAG 58.186 50.000 0.00 0.00 0.00 3.02
1452 3189 2.270352 AAATGGTGAAGGCGAGTTGA 57.730 45.000 0.00 0.00 0.00 3.18
1453 3190 2.293122 TCAAAATGGTGAAGGCGAGTTG 59.707 45.455 0.00 0.00 0.00 3.16
1455 3192 2.270352 TCAAAATGGTGAAGGCGAGT 57.730 45.000 0.00 0.00 0.00 4.18
1459 3202 2.412770 CGCAATTCAAAATGGTGAAGGC 59.587 45.455 0.00 0.00 40.72 4.35
1472 3215 3.119884 CCAAGTGTATGAAGCGCAATTCA 60.120 43.478 11.47 12.80 43.04 2.57
1480 3223 5.665381 GCTTCTATCCAAGTGTATGAAGC 57.335 43.478 8.66 8.66 44.75 3.86
1512 3279 3.091545 ACCGCAAGACATGGATTTTCAT 58.908 40.909 0.00 0.00 43.02 2.57
1529 3297 3.313690 CCCTACAATGAAAACAAACCGC 58.686 45.455 0.00 0.00 0.00 5.68
1536 3304 5.437060 TCTGGATAGCCCTACAATGAAAAC 58.563 41.667 0.00 0.00 35.38 2.43
1542 3310 3.780294 TGTGTTCTGGATAGCCCTACAAT 59.220 43.478 0.00 0.00 35.38 2.71
1546 3314 3.116096 ACTGTGTTCTGGATAGCCCTA 57.884 47.619 0.00 0.00 35.38 3.53
1574 3342 4.349342 CAGGTCTATCTTTGGCCTAGGAAT 59.651 45.833 14.75 0.00 0.00 3.01
1576 3344 3.052109 TCAGGTCTATCTTTGGCCTAGGA 60.052 47.826 14.75 1.89 0.00 2.94
1646 3414 1.597461 GGTCGAAAGGAGGGTCCAG 59.403 63.158 0.00 0.00 39.61 3.86
1784 3558 1.086696 CACGATGTTGGATGGTGGAC 58.913 55.000 0.00 0.00 0.00 4.02
1816 3590 4.739716 GTGTAACTTGCAGGTTTCAATGTG 59.260 41.667 20.07 0.00 30.65 3.21
1940 3714 2.049156 CACCGTCTCGCTCTTGCA 60.049 61.111 0.00 0.00 39.64 4.08
2008 3782 3.710722 CCCAGCTGGTTCCTCGCT 61.711 66.667 30.63 1.66 0.00 4.93
2158 3947 1.905512 GCCGGTGAGGTACAGGATT 59.094 57.895 1.90 0.00 46.29 3.01
2262 4052 1.003718 GCTGGCGTCTTGTTACCCT 60.004 57.895 0.00 0.00 0.00 4.34
2273 4063 1.743394 GCCTACTTAATTTGCTGGCGT 59.257 47.619 0.00 0.00 0.00 5.68
2408 4204 1.333347 CGCAACGGTTCAATTTCGACA 60.333 47.619 0.00 0.00 0.00 4.35
2409 4205 1.314581 CGCAACGGTTCAATTTCGAC 58.685 50.000 0.00 0.00 0.00 4.20
2411 4207 0.658829 TGCGCAACGGTTCAATTTCG 60.659 50.000 8.16 0.00 0.00 3.46
2502 4332 1.261989 CGTTCTGCCGCAAATTCATG 58.738 50.000 0.00 0.00 0.00 3.07
2504 4334 1.195900 GTACGTTCTGCCGCAAATTCA 59.804 47.619 0.00 0.00 0.00 2.57
2564 4394 6.317140 CCTGATCTTGCTATTCTTAGTTTGCA 59.683 38.462 0.00 0.00 0.00 4.08
2565 4395 6.540189 TCCTGATCTTGCTATTCTTAGTTTGC 59.460 38.462 0.00 0.00 0.00 3.68
2566 4396 8.498054 TTCCTGATCTTGCTATTCTTAGTTTG 57.502 34.615 0.00 0.00 0.00 2.93
2661 4492 6.407202 ACATTCTTATATTATGGGACGAGGC 58.593 40.000 0.00 0.00 0.00 4.70
2695 4526 5.570234 ACTCCGTTTTTCAAGCTAAAACA 57.430 34.783 18.63 4.46 42.68 2.83
2699 4530 8.436046 TTTTACTACTCCGTTTTTCAAGCTAA 57.564 30.769 0.00 0.00 0.00 3.09
2700 4531 8.611654 ATTTTACTACTCCGTTTTTCAAGCTA 57.388 30.769 0.00 0.00 0.00 3.32
2702 4533 9.326339 CTAATTTTACTACTCCGTTTTTCAAGC 57.674 33.333 0.00 0.00 0.00 4.01
2703 4534 9.821662 CCTAATTTTACTACTCCGTTTTTCAAG 57.178 33.333 0.00 0.00 0.00 3.02
2705 4536 7.094677 GCCCTAATTTTACTACTCCGTTTTTCA 60.095 37.037 0.00 0.00 0.00 2.69
2706 4537 7.120285 AGCCCTAATTTTACTACTCCGTTTTTC 59.880 37.037 0.00 0.00 0.00 2.29
2707 4538 6.944290 AGCCCTAATTTTACTACTCCGTTTTT 59.056 34.615 0.00 0.00 0.00 1.94
2709 4540 6.058553 AGCCCTAATTTTACTACTCCGTTT 57.941 37.500 0.00 0.00 0.00 3.60
2710 4541 5.396101 GGAGCCCTAATTTTACTACTCCGTT 60.396 44.000 0.00 0.00 33.72 4.44
2711 4542 4.100653 GGAGCCCTAATTTTACTACTCCGT 59.899 45.833 0.00 0.00 33.72 4.69
2712 4543 4.100498 TGGAGCCCTAATTTTACTACTCCG 59.900 45.833 0.00 0.00 44.35 4.63
2713 4544 5.625568 TGGAGCCCTAATTTTACTACTCC 57.374 43.478 0.00 0.00 42.26 3.85
2780 4617 0.969149 AGAGTCCATGACAGCGTCAA 59.031 50.000 13.81 0.00 45.96 3.18
2782 4619 2.941453 TTAGAGTCCATGACAGCGTC 57.059 50.000 0.00 2.32 34.60 5.19
2783 4620 3.678056 TTTTAGAGTCCATGACAGCGT 57.322 42.857 0.00 0.00 34.60 5.07
2784 4621 3.181530 CGTTTTTAGAGTCCATGACAGCG 60.182 47.826 0.00 0.00 34.60 5.18
2785 4622 3.746492 ACGTTTTTAGAGTCCATGACAGC 59.254 43.478 0.00 0.00 34.60 4.40
2786 4623 5.230942 AGACGTTTTTAGAGTCCATGACAG 58.769 41.667 0.00 0.00 34.60 3.51
2787 4624 5.209818 AGACGTTTTTAGAGTCCATGACA 57.790 39.130 0.00 0.00 34.60 3.58
2788 4625 7.829378 ATAAGACGTTTTTAGAGTCCATGAC 57.171 36.000 0.00 0.00 35.65 3.06
2789 4626 9.932207 TTTATAAGACGTTTTTAGAGTCCATGA 57.068 29.630 0.00 0.00 35.65 3.07
2792 4629 9.768662 ACTTTTATAAGACGTTTTTAGAGTCCA 57.231 29.630 0.00 0.00 35.65 4.02
2801 4638 9.433153 CCCTCTCTAACTTTTATAAGACGTTTT 57.567 33.333 0.00 0.00 35.30 2.43
2804 4641 7.614974 ACTCCCTCTCTAACTTTTATAAGACGT 59.385 37.037 0.00 0.00 35.30 4.34
2805 4642 7.998580 ACTCCCTCTCTAACTTTTATAAGACG 58.001 38.462 0.00 0.00 35.30 4.18
2810 4647 9.064706 CGTGATACTCCCTCTCTAACTTTTATA 57.935 37.037 0.00 0.00 0.00 0.98
2811 4648 7.470286 GCGTGATACTCCCTCTCTAACTTTTAT 60.470 40.741 0.00 0.00 0.00 1.40
2812 4649 6.183360 GCGTGATACTCCCTCTCTAACTTTTA 60.183 42.308 0.00 0.00 0.00 1.52
2813 4650 5.394333 GCGTGATACTCCCTCTCTAACTTTT 60.394 44.000 0.00 0.00 0.00 2.27
2815 4652 3.633065 GCGTGATACTCCCTCTCTAACTT 59.367 47.826 0.00 0.00 0.00 2.66
2817 4654 2.293955 GGCGTGATACTCCCTCTCTAAC 59.706 54.545 0.00 0.00 0.00 2.34
2818 4655 2.092049 TGGCGTGATACTCCCTCTCTAA 60.092 50.000 0.00 0.00 0.00 2.10
2819 4656 1.493446 TGGCGTGATACTCCCTCTCTA 59.507 52.381 0.00 0.00 0.00 2.43
2822 4659 1.115467 CTTGGCGTGATACTCCCTCT 58.885 55.000 0.00 0.00 0.00 3.69
2823 4660 0.824759 ACTTGGCGTGATACTCCCTC 59.175 55.000 0.00 0.00 0.00 4.30
2824 4661 0.537188 CACTTGGCGTGATACTCCCT 59.463 55.000 0.00 0.00 46.81 4.20
2825 4662 3.065575 CACTTGGCGTGATACTCCC 57.934 57.895 0.00 0.00 46.81 4.30
2874 4747 2.930950 CTCTTGGGTGTCTGGTTTCAA 58.069 47.619 0.00 0.00 0.00 2.69
2933 4806 6.205853 GCAGCTCTAGATCTTTGCTACTACTA 59.794 42.308 0.00 0.00 32.29 1.82
2935 4808 5.009610 AGCAGCTCTAGATCTTTGCTACTAC 59.990 44.000 14.85 0.32 39.85 2.73
2971 4848 2.267324 GCTGTGGCTGGAGAGGAC 59.733 66.667 0.00 0.00 35.22 3.85
2992 4869 0.250381 GATGCTGATGGCTCTCTGGG 60.250 60.000 0.00 0.00 42.39 4.45
2997 4874 0.987081 AGGGTGATGCTGATGGCTCT 60.987 55.000 0.00 0.00 42.39 4.09
3083 4960 1.034292 GCCATGGAGCAGAGGGAAAC 61.034 60.000 18.40 0.00 0.00 2.78
3084 4961 1.210204 AGCCATGGAGCAGAGGGAAA 61.210 55.000 18.40 0.00 34.23 3.13
3085 4962 1.617536 AGCCATGGAGCAGAGGGAA 60.618 57.895 18.40 0.00 34.23 3.97
3086 4963 2.041762 AGCCATGGAGCAGAGGGA 59.958 61.111 18.40 0.00 34.23 4.20
3087 4964 2.509916 GAGCCATGGAGCAGAGGG 59.490 66.667 18.40 0.00 34.23 4.30
3088 4965 2.509916 GGAGCCATGGAGCAGAGG 59.490 66.667 18.40 0.00 34.23 3.69
3089 4966 2.108566 CGGAGCCATGGAGCAGAG 59.891 66.667 18.40 0.00 34.23 3.35
3111 4988 4.269363 CCAAGTATTTTAACTACCGCTCCG 59.731 45.833 0.00 0.00 0.00 4.63
3112 4989 5.422145 TCCAAGTATTTTAACTACCGCTCC 58.578 41.667 0.00 0.00 0.00 4.70
3113 4990 5.006455 GCTCCAAGTATTTTAACTACCGCTC 59.994 44.000 0.00 0.00 0.00 5.03
3114 4991 4.874396 GCTCCAAGTATTTTAACTACCGCT 59.126 41.667 0.00 0.00 0.00 5.52
3115 4992 4.260091 CGCTCCAAGTATTTTAACTACCGC 60.260 45.833 0.00 0.00 0.00 5.68
3116 4993 5.104374 TCGCTCCAAGTATTTTAACTACCG 58.896 41.667 0.00 0.00 0.00 4.02
3117 4994 6.759827 TGATCGCTCCAAGTATTTTAACTACC 59.240 38.462 0.00 0.00 0.00 3.18
3118 4995 7.766219 TGATCGCTCCAAGTATTTTAACTAC 57.234 36.000 0.00 0.00 0.00 2.73
3119 4996 8.662141 GTTTGATCGCTCCAAGTATTTTAACTA 58.338 33.333 0.00 0.00 0.00 2.24
3120 4997 7.174253 TGTTTGATCGCTCCAAGTATTTTAACT 59.826 33.333 0.00 0.00 0.00 2.24
3121 4998 7.302524 TGTTTGATCGCTCCAAGTATTTTAAC 58.697 34.615 0.00 0.00 0.00 2.01
3122 4999 7.441890 TGTTTGATCGCTCCAAGTATTTTAA 57.558 32.000 0.00 0.00 0.00 1.52
3123 5000 6.403200 GCTGTTTGATCGCTCCAAGTATTTTA 60.403 38.462 0.00 0.00 0.00 1.52
3124 5001 5.619981 GCTGTTTGATCGCTCCAAGTATTTT 60.620 40.000 0.00 0.00 0.00 1.82
3125 5002 4.142600 GCTGTTTGATCGCTCCAAGTATTT 60.143 41.667 0.00 0.00 0.00 1.40
3126 5003 3.375299 GCTGTTTGATCGCTCCAAGTATT 59.625 43.478 0.00 0.00 0.00 1.89
3127 5004 2.939103 GCTGTTTGATCGCTCCAAGTAT 59.061 45.455 0.00 0.00 0.00 2.12
3128 5005 2.028112 AGCTGTTTGATCGCTCCAAGTA 60.028 45.455 0.00 0.00 0.00 2.24
3129 5006 1.160137 GCTGTTTGATCGCTCCAAGT 58.840 50.000 0.00 0.00 0.00 3.16
3130 5007 1.129998 CAGCTGTTTGATCGCTCCAAG 59.870 52.381 5.25 0.00 0.00 3.61
3131 5008 1.159285 CAGCTGTTTGATCGCTCCAA 58.841 50.000 5.25 0.00 0.00 3.53
3132 5009 1.300971 GCAGCTGTTTGATCGCTCCA 61.301 55.000 16.64 0.00 0.00 3.86
3133 5010 1.023513 AGCAGCTGTTTGATCGCTCC 61.024 55.000 16.64 0.00 0.00 4.70
3134 5011 0.373024 GAGCAGCTGTTTGATCGCTC 59.627 55.000 16.64 9.11 39.10 5.03
3135 5012 0.036577 AGAGCAGCTGTTTGATCGCT 60.037 50.000 16.64 2.64 38.47 4.93
3136 5013 0.096628 CAGAGCAGCTGTTTGATCGC 59.903 55.000 16.64 0.00 38.47 4.58
3137 5014 0.096628 GCAGAGCAGCTGTTTGATCG 59.903 55.000 16.64 0.00 46.62 3.69
3138 5015 1.162698 TGCAGAGCAGCTGTTTGATC 58.837 50.000 16.64 6.28 46.62 2.92
3139 5016 3.334413 TGCAGAGCAGCTGTTTGAT 57.666 47.368 16.64 0.00 46.62 2.57
3140 5017 4.883240 TGCAGAGCAGCTGTTTGA 57.117 50.000 16.64 0.04 46.62 2.69
3149 5026 5.737860 TCAAATTCTAGAATCTGCAGAGCA 58.262 37.500 22.96 5.91 36.92 4.26
3150 5027 6.238429 CCTTCAAATTCTAGAATCTGCAGAGC 60.238 42.308 22.96 16.13 0.00 4.09
3151 5028 7.046652 TCCTTCAAATTCTAGAATCTGCAGAG 58.953 38.462 22.96 12.26 0.00 3.35
3152 5029 6.950842 TCCTTCAAATTCTAGAATCTGCAGA 58.049 36.000 20.79 20.79 0.00 4.26
3153 5030 6.822676 ACTCCTTCAAATTCTAGAATCTGCAG 59.177 38.462 18.19 13.93 0.00 4.41
3154 5031 6.715280 ACTCCTTCAAATTCTAGAATCTGCA 58.285 36.000 18.19 4.73 0.00 4.41
3155 5032 7.414984 CCAACTCCTTCAAATTCTAGAATCTGC 60.415 40.741 18.19 0.00 0.00 4.26
3156 5033 7.609532 ACCAACTCCTTCAAATTCTAGAATCTG 59.390 37.037 18.19 14.92 0.00 2.90
3157 5034 7.609532 CACCAACTCCTTCAAATTCTAGAATCT 59.390 37.037 18.19 1.37 0.00 2.40
3158 5035 7.148171 CCACCAACTCCTTCAAATTCTAGAATC 60.148 40.741 18.19 0.00 0.00 2.52
3159 5036 6.660949 CCACCAACTCCTTCAAATTCTAGAAT 59.339 38.462 12.37 12.37 0.00 2.40
3160 5037 6.003950 CCACCAACTCCTTCAAATTCTAGAA 58.996 40.000 7.82 7.82 0.00 2.10
3161 5038 5.309543 TCCACCAACTCCTTCAAATTCTAGA 59.690 40.000 0.00 0.00 0.00 2.43
3162 5039 5.412904 GTCCACCAACTCCTTCAAATTCTAG 59.587 44.000 0.00 0.00 0.00 2.43
3163 5040 5.073144 AGTCCACCAACTCCTTCAAATTCTA 59.927 40.000 0.00 0.00 0.00 2.10
3164 5041 4.141158 AGTCCACCAACTCCTTCAAATTCT 60.141 41.667 0.00 0.00 0.00 2.40
3165 5042 4.022849 CAGTCCACCAACTCCTTCAAATTC 60.023 45.833 0.00 0.00 0.00 2.17
3166 5043 3.891366 CAGTCCACCAACTCCTTCAAATT 59.109 43.478 0.00 0.00 0.00 1.82
3167 5044 3.490348 CAGTCCACCAACTCCTTCAAAT 58.510 45.455 0.00 0.00 0.00 2.32
3168 5045 2.930950 CAGTCCACCAACTCCTTCAAA 58.069 47.619 0.00 0.00 0.00 2.69
3169 5046 1.476833 GCAGTCCACCAACTCCTTCAA 60.477 52.381 0.00 0.00 0.00 2.69
3170 5047 0.108585 GCAGTCCACCAACTCCTTCA 59.891 55.000 0.00 0.00 0.00 3.02
3171 5048 0.606673 GGCAGTCCACCAACTCCTTC 60.607 60.000 0.00 0.00 0.00 3.46
3172 5049 1.352622 TGGCAGTCCACCAACTCCTT 61.353 55.000 0.00 0.00 37.47 3.36
3173 5050 1.352622 TTGGCAGTCCACCAACTCCT 61.353 55.000 0.00 0.00 42.23 3.69
3174 5051 0.467290 TTTGGCAGTCCACCAACTCC 60.467 55.000 0.00 0.00 46.66 3.85
3175 5052 0.668535 GTTTGGCAGTCCACCAACTC 59.331 55.000 0.00 0.00 46.66 3.01
3176 5053 1.101049 CGTTTGGCAGTCCACCAACT 61.101 55.000 0.00 0.00 46.66 3.16
3177 5054 1.358759 CGTTTGGCAGTCCACCAAC 59.641 57.895 0.00 0.00 46.66 3.77
3178 5055 2.485795 GCGTTTGGCAGTCCACCAA 61.486 57.895 0.00 0.00 45.37 3.67
3179 5056 2.904866 GCGTTTGGCAGTCCACCA 60.905 61.111 0.00 0.00 43.33 4.17
3180 5057 4.025401 CGCGTTTGGCAGTCCACC 62.025 66.667 0.00 0.00 43.33 4.61
3181 5058 4.683334 GCGCGTTTGGCAGTCCAC 62.683 66.667 8.43 0.00 43.33 4.02
3185 5062 4.323477 TAGGGCGCGTTTGGCAGT 62.323 61.111 8.43 0.00 43.84 4.40
3186 5063 2.845752 TACTAGGGCGCGTTTGGCAG 62.846 60.000 8.43 0.31 43.84 4.85
3187 5064 2.945161 TACTAGGGCGCGTTTGGCA 61.945 57.895 8.43 0.00 43.84 4.92
3188 5065 2.125431 TACTAGGGCGCGTTTGGC 60.125 61.111 8.43 0.00 38.69 4.52
3189 5066 0.457035 TAGTACTAGGGCGCGTTTGG 59.543 55.000 8.43 0.00 0.00 3.28
3190 5067 2.124903 CATAGTACTAGGGCGCGTTTG 58.875 52.381 8.43 0.00 0.00 2.93
3191 5068 1.068127 CCATAGTACTAGGGCGCGTTT 59.932 52.381 19.92 0.00 29.73 3.60
3192 5069 0.672342 CCATAGTACTAGGGCGCGTT 59.328 55.000 19.92 0.00 29.73 4.84
3193 5070 0.179009 TCCATAGTACTAGGGCGCGT 60.179 55.000 25.53 0.00 36.96 6.01
3194 5071 0.522180 CTCCATAGTACTAGGGCGCG 59.478 60.000 25.53 13.86 36.96 6.86
3195 5072 0.889306 CCTCCATAGTACTAGGGCGC 59.111 60.000 25.53 0.00 36.96 6.53
3196 5073 2.161030 GACCTCCATAGTACTAGGGCG 58.839 57.143 25.53 20.32 36.96 6.13
3197 5074 2.892215 GTGACCTCCATAGTACTAGGGC 59.108 54.545 25.53 17.17 36.96 5.19
3198 5075 3.147629 CGTGACCTCCATAGTACTAGGG 58.852 54.545 24.61 24.61 38.28 3.53
3199 5076 4.082665 TCGTGACCTCCATAGTACTAGG 57.917 50.000 8.85 8.21 35.14 3.02
3200 5077 4.023878 GCTTCGTGACCTCCATAGTACTAG 60.024 50.000 8.85 0.00 0.00 2.57
3201 5078 3.881688 GCTTCGTGACCTCCATAGTACTA 59.118 47.826 4.77 4.77 0.00 1.82
3202 5079 2.688958 GCTTCGTGACCTCCATAGTACT 59.311 50.000 0.00 0.00 0.00 2.73
3203 5080 2.426024 TGCTTCGTGACCTCCATAGTAC 59.574 50.000 0.00 0.00 0.00 2.73
3204 5081 2.688446 CTGCTTCGTGACCTCCATAGTA 59.312 50.000 0.00 0.00 0.00 1.82
3205 5082 1.478510 CTGCTTCGTGACCTCCATAGT 59.521 52.381 0.00 0.00 0.00 2.12
3206 5083 1.804372 GCTGCTTCGTGACCTCCATAG 60.804 57.143 0.00 0.00 0.00 2.23
3207 5084 0.175760 GCTGCTTCGTGACCTCCATA 59.824 55.000 0.00 0.00 0.00 2.74
3208 5085 1.078848 GCTGCTTCGTGACCTCCAT 60.079 57.895 0.00 0.00 0.00 3.41
3209 5086 2.210013 AGCTGCTTCGTGACCTCCA 61.210 57.895 0.00 0.00 0.00 3.86
3210 5087 1.739562 CAGCTGCTTCGTGACCTCC 60.740 63.158 0.00 0.00 0.00 4.30
3211 5088 1.739562 CCAGCTGCTTCGTGACCTC 60.740 63.158 8.66 0.00 0.00 3.85
3212 5089 1.758440 TTCCAGCTGCTTCGTGACCT 61.758 55.000 8.66 0.00 0.00 3.85
3213 5090 0.884704 TTTCCAGCTGCTTCGTGACC 60.885 55.000 8.66 0.00 0.00 4.02
3214 5091 1.129437 GATTTCCAGCTGCTTCGTGAC 59.871 52.381 8.66 0.00 0.00 3.67
3215 5092 1.002430 AGATTTCCAGCTGCTTCGTGA 59.998 47.619 8.66 0.00 0.00 4.35
3216 5093 1.129998 CAGATTTCCAGCTGCTTCGTG 59.870 52.381 8.66 0.00 0.00 4.35
3217 5094 1.446907 CAGATTTCCAGCTGCTTCGT 58.553 50.000 8.66 0.00 0.00 3.85
3218 5095 0.731417 CCAGATTTCCAGCTGCTTCG 59.269 55.000 8.66 0.00 0.00 3.79
3219 5096 2.119801 TCCAGATTTCCAGCTGCTTC 57.880 50.000 8.66 1.77 0.00 3.86
3220 5097 2.592102 TTCCAGATTTCCAGCTGCTT 57.408 45.000 8.66 0.00 0.00 3.91
3221 5098 2.758979 CAATTCCAGATTTCCAGCTGCT 59.241 45.455 8.66 0.00 0.00 4.24
3222 5099 2.737679 GCAATTCCAGATTTCCAGCTGC 60.738 50.000 8.66 0.00 0.00 5.25
3223 5100 2.494471 TGCAATTCCAGATTTCCAGCTG 59.506 45.455 6.78 6.78 0.00 4.24
3224 5101 2.811410 TGCAATTCCAGATTTCCAGCT 58.189 42.857 0.00 0.00 0.00 4.24
3225 5102 3.598019 TTGCAATTCCAGATTTCCAGC 57.402 42.857 0.00 0.00 0.00 4.85
3226 5103 4.221262 TCCTTTGCAATTCCAGATTTCCAG 59.779 41.667 0.00 0.00 0.00 3.86
3227 5104 4.158786 TCCTTTGCAATTCCAGATTTCCA 58.841 39.130 0.00 0.00 0.00 3.53
3228 5105 4.752146 CTCCTTTGCAATTCCAGATTTCC 58.248 43.478 0.00 0.00 0.00 3.13
3229 5106 4.179298 GCTCCTTTGCAATTCCAGATTTC 58.821 43.478 0.00 0.00 0.00 2.17
3230 5107 3.579586 TGCTCCTTTGCAATTCCAGATTT 59.420 39.130 0.00 0.00 40.29 2.17
3231 5108 3.167485 TGCTCCTTTGCAATTCCAGATT 58.833 40.909 0.00 0.00 40.29 2.40
3232 5109 2.811410 TGCTCCTTTGCAATTCCAGAT 58.189 42.857 0.00 0.00 40.29 2.90
3233 5110 2.291209 TGCTCCTTTGCAATTCCAGA 57.709 45.000 0.00 0.00 40.29 3.86
3241 5118 4.935352 ACAATTAAGTTGCTCCTTTGCA 57.065 36.364 0.00 0.00 41.69 4.08
3242 5119 4.448732 CCAACAATTAAGTTGCTCCTTTGC 59.551 41.667 3.67 0.00 45.73 3.68
3243 5120 5.841810 TCCAACAATTAAGTTGCTCCTTTG 58.158 37.500 3.67 0.00 45.73 2.77
3244 5121 6.458210 CATCCAACAATTAAGTTGCTCCTTT 58.542 36.000 3.67 0.00 45.73 3.11
3245 5122 5.047092 CCATCCAACAATTAAGTTGCTCCTT 60.047 40.000 3.67 0.00 45.73 3.36
3246 5123 4.463891 CCATCCAACAATTAAGTTGCTCCT 59.536 41.667 3.67 0.00 45.73 3.69
3247 5124 4.747810 CCATCCAACAATTAAGTTGCTCC 58.252 43.478 3.67 0.00 45.73 4.70
3248 5125 4.082026 AGCCATCCAACAATTAAGTTGCTC 60.082 41.667 3.67 0.00 45.73 4.26
3249 5126 3.834231 AGCCATCCAACAATTAAGTTGCT 59.166 39.130 3.67 0.00 45.73 3.91
3250 5127 4.192429 AGCCATCCAACAATTAAGTTGC 57.808 40.909 3.67 0.00 45.73 4.17
3251 5128 5.540911 ACAAGCCATCCAACAATTAAGTTG 58.459 37.500 2.43 2.43 46.44 3.16
3252 5129 5.806654 ACAAGCCATCCAACAATTAAGTT 57.193 34.783 0.00 0.00 0.00 2.66
3253 5130 5.511202 CCAACAAGCCATCCAACAATTAAGT 60.511 40.000 0.00 0.00 0.00 2.24
3254 5131 4.931002 CCAACAAGCCATCCAACAATTAAG 59.069 41.667 0.00 0.00 0.00 1.85
3255 5132 4.590647 TCCAACAAGCCATCCAACAATTAA 59.409 37.500 0.00 0.00 0.00 1.40
3256 5133 4.155709 TCCAACAAGCCATCCAACAATTA 58.844 39.130 0.00 0.00 0.00 1.40
3257 5134 2.971330 TCCAACAAGCCATCCAACAATT 59.029 40.909 0.00 0.00 0.00 2.32
3258 5135 2.607499 TCCAACAAGCCATCCAACAAT 58.393 42.857 0.00 0.00 0.00 2.71
3259 5136 2.079170 TCCAACAAGCCATCCAACAA 57.921 45.000 0.00 0.00 0.00 2.83
3260 5137 2.079170 TTCCAACAAGCCATCCAACA 57.921 45.000 0.00 0.00 0.00 3.33
3261 5138 3.683365 AATTCCAACAAGCCATCCAAC 57.317 42.857 0.00 0.00 0.00 3.77
3262 5139 5.279910 CCTTAAATTCCAACAAGCCATCCAA 60.280 40.000 0.00 0.00 0.00 3.53
3263 5140 4.222588 CCTTAAATTCCAACAAGCCATCCA 59.777 41.667 0.00 0.00 0.00 3.41
3264 5141 4.222810 ACCTTAAATTCCAACAAGCCATCC 59.777 41.667 0.00 0.00 0.00 3.51
3265 5142 5.405935 ACCTTAAATTCCAACAAGCCATC 57.594 39.130 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.