Multiple sequence alignment - TraesCS7D01G428100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G428100 chr7D 100.000 3906 0 0 1 3906 548767371 548771276 0.000000e+00 7214.0
1 TraesCS7D01G428100 chr7A 95.702 1652 44 11 1843 3480 632543991 632545629 0.000000e+00 2632.0
2 TraesCS7D01G428100 chr7A 95.178 954 33 8 895 1847 632543022 632543963 0.000000e+00 1495.0
3 TraesCS7D01G428100 chr7A 92.035 226 18 0 3674 3899 632545817 632546042 6.300000e-83 318.0
4 TraesCS7D01G428100 chr7A 94.304 158 7 2 3481 3637 632545663 632545819 1.400000e-59 241.0
5 TraesCS7D01G428100 chr7A 88.485 165 12 3 349 513 632542070 632542227 3.980000e-45 193.0
6 TraesCS7D01G428100 chr7A 89.610 77 8 0 626 702 279185886 279185962 8.930000e-17 99.0
7 TraesCS7D01G428100 chr7A 89.706 68 6 1 513 580 735744299 735744233 6.950000e-13 86.1
8 TraesCS7D01G428100 chr7A 89.706 68 6 1 513 580 735777196 735777130 6.950000e-13 86.1
9 TraesCS7D01G428100 chr7B 95.263 1520 47 5 1845 3361 592340969 592342466 0.000000e+00 2385.0
10 TraesCS7D01G428100 chr7B 93.142 904 40 11 959 1847 592340038 592340934 0.000000e+00 1306.0
11 TraesCS7D01G428100 chr7B 91.544 544 21 6 3367 3906 592342526 592343048 0.000000e+00 726.0
12 TraesCS7D01G428100 chr7B 87.425 167 15 3 3191 3354 591951271 591951108 1.850000e-43 187.0
13 TraesCS7D01G428100 chr7B 91.463 82 5 2 3188 3268 592346512 592346592 1.150000e-20 111.0
14 TraesCS7D01G428100 chr3D 83.889 180 27 2 173 351 589416441 589416263 1.870000e-38 171.0
15 TraesCS7D01G428100 chr1A 88.350 103 11 1 626 728 570118425 570118526 5.300000e-24 122.0
16 TraesCS7D01G428100 chr1A 78.531 177 28 6 173 348 574301162 574300995 1.480000e-19 108.0
17 TraesCS7D01G428100 chr6B 80.488 123 22 2 625 747 207126982 207127102 4.160000e-15 93.5
18 TraesCS7D01G428100 chr6B 92.188 64 5 0 516 579 49827699 49827762 1.490000e-14 91.6
19 TraesCS7D01G428100 chr6B 90.625 64 6 0 516 579 49622752 49622815 6.950000e-13 86.1
20 TraesCS7D01G428100 chr6B 90.625 64 6 0 516 579 49622815 49622752 6.950000e-13 86.1
21 TraesCS7D01G428100 chr6B 97.674 43 1 0 3727 3769 337232093 337232051 1.510000e-09 75.0
22 TraesCS7D01G428100 chr6A 88.158 76 9 0 626 701 587966684 587966609 1.490000e-14 91.6
23 TraesCS7D01G428100 chr6A 97.674 43 1 0 3727 3769 349517766 349517808 1.510000e-09 75.0
24 TraesCS7D01G428100 chr4B 90.769 65 4 1 515 579 124049312 124049250 6.950000e-13 86.1
25 TraesCS7D01G428100 chr2B 87.500 72 9 0 516 587 693327328 693327257 2.500000e-12 84.2
26 TraesCS7D01G428100 chr2B 89.394 66 7 0 516 581 693327265 693327330 2.500000e-12 84.2
27 TraesCS7D01G428100 chr1D 86.076 79 8 2 505 580 386424761 386424683 9.000000e-12 82.4
28 TraesCS7D01G428100 chr6D 97.674 43 1 0 3727 3769 249449536 249449494 1.510000e-09 75.0
29 TraesCS7D01G428100 chr5A 97.059 34 1 0 622 655 28111729 28111696 1.520000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G428100 chr7D 548767371 548771276 3905 False 7214.0 7214 100.0000 1 3906 1 chr7D.!!$F1 3905
1 TraesCS7D01G428100 chr7A 632542070 632546042 3972 False 975.8 2632 93.1408 349 3899 5 chr7A.!!$F2 3550
2 TraesCS7D01G428100 chr7B 592340038 592346592 6554 False 1132.0 2385 92.8530 959 3906 4 chr7B.!!$F1 2947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 244 0.170561 CGGAGACTCGTGTGGTTAGG 59.829 60.0 0.00 0.0 0.00 2.69 F
268 269 0.318275 GACGGCGCTGAGGATTCTAG 60.318 60.0 25.98 0.0 0.00 2.43 F
1770 2355 0.178068 GCTTGAACGGATGGCTCCTA 59.822 55.0 0.00 0.0 39.65 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 2356 0.108520 CATGGGGCAGTGCAAATGTC 60.109 55.0 18.61 0.0 34.63 3.06 R
1773 2358 0.828022 ATCATGGGGCAGTGCAAATG 59.172 50.0 18.61 16.1 33.24 2.32 R
3274 3907 0.103208 GCTCCGTGACCTCCATAGTG 59.897 60.0 0.00 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.168496 GGGAAAAGGTTACCTTCAGCC 58.832 52.381 17.77 17.02 43.92 4.85
21 22 1.810755 GGAAAAGGTTACCTTCAGCCG 59.189 52.381 17.77 0.00 43.92 5.52
22 23 1.810755 GAAAAGGTTACCTTCAGCCGG 59.189 52.381 17.77 0.00 43.92 6.13
23 24 0.608308 AAAGGTTACCTTCAGCCGGC 60.608 55.000 21.89 21.89 43.92 6.13
24 25 2.437895 GGTTACCTTCAGCCGGCC 60.438 66.667 26.15 5.07 0.00 6.13
25 26 2.818274 GTTACCTTCAGCCGGCCG 60.818 66.667 26.15 21.04 0.00 6.13
26 27 2.998480 TTACCTTCAGCCGGCCGA 60.998 61.111 30.73 17.59 0.00 5.54
27 28 2.363975 TTACCTTCAGCCGGCCGAT 61.364 57.895 30.73 12.66 0.00 4.18
28 29 2.306255 TTACCTTCAGCCGGCCGATC 62.306 60.000 30.73 18.31 0.00 3.69
64 65 4.143333 CCTCCGCGTCCGTTGGAT 62.143 66.667 4.92 0.00 32.73 3.41
65 66 2.125673 CTCCGCGTCCGTTGGATT 60.126 61.111 4.92 0.00 32.73 3.01
66 67 2.433491 TCCGCGTCCGTTGGATTG 60.433 61.111 4.92 0.00 32.73 2.67
67 68 2.433491 CCGCGTCCGTTGGATTGA 60.433 61.111 4.92 0.00 32.73 2.57
68 69 2.736682 CCGCGTCCGTTGGATTGAC 61.737 63.158 4.92 0.00 32.73 3.18
69 70 1.736645 CGCGTCCGTTGGATTGACT 60.737 57.895 0.00 0.00 32.73 3.41
70 71 1.683790 CGCGTCCGTTGGATTGACTC 61.684 60.000 0.00 0.00 32.73 3.36
71 72 0.669318 GCGTCCGTTGGATTGACTCA 60.669 55.000 0.00 0.00 32.73 3.41
72 73 2.007049 GCGTCCGTTGGATTGACTCAT 61.007 52.381 0.00 0.00 32.73 2.90
73 74 1.660607 CGTCCGTTGGATTGACTCATG 59.339 52.381 0.00 0.00 32.73 3.07
74 75 2.673893 CGTCCGTTGGATTGACTCATGA 60.674 50.000 0.00 0.00 32.73 3.07
75 76 3.535561 GTCCGTTGGATTGACTCATGAT 58.464 45.455 0.00 0.00 32.73 2.45
76 77 3.941483 GTCCGTTGGATTGACTCATGATT 59.059 43.478 0.00 0.00 32.73 2.57
77 78 5.116180 GTCCGTTGGATTGACTCATGATTA 58.884 41.667 0.00 0.00 32.73 1.75
78 79 5.235186 GTCCGTTGGATTGACTCATGATTAG 59.765 44.000 0.00 0.00 32.73 1.73
79 80 5.128663 TCCGTTGGATTGACTCATGATTAGA 59.871 40.000 0.00 0.00 0.00 2.10
80 81 5.817296 CCGTTGGATTGACTCATGATTAGAA 59.183 40.000 0.00 0.00 0.00 2.10
81 82 6.018425 CCGTTGGATTGACTCATGATTAGAAG 60.018 42.308 0.00 0.00 0.00 2.85
82 83 6.018425 CGTTGGATTGACTCATGATTAGAAGG 60.018 42.308 0.00 0.00 0.00 3.46
83 84 6.566079 TGGATTGACTCATGATTAGAAGGT 57.434 37.500 0.00 0.00 0.00 3.50
84 85 6.586344 TGGATTGACTCATGATTAGAAGGTC 58.414 40.000 0.00 0.00 0.00 3.85
85 86 6.156775 TGGATTGACTCATGATTAGAAGGTCA 59.843 38.462 7.41 7.41 0.00 4.02
86 87 7.050377 GGATTGACTCATGATTAGAAGGTCAA 58.950 38.462 20.19 20.19 43.18 3.18
87 88 7.226325 GGATTGACTCATGATTAGAAGGTCAAG 59.774 40.741 21.55 0.79 42.61 3.02
88 89 6.857437 TGACTCATGATTAGAAGGTCAAGA 57.143 37.500 8.72 0.00 30.81 3.02
89 90 6.871844 TGACTCATGATTAGAAGGTCAAGAG 58.128 40.000 8.72 6.18 42.66 2.85
90 91 6.665248 TGACTCATGATTAGAAGGTCAAGAGA 59.335 38.462 12.72 0.00 40.67 3.10
91 92 7.179160 TGACTCATGATTAGAAGGTCAAGAGAA 59.821 37.037 12.72 1.12 40.67 2.87
92 93 7.911651 ACTCATGATTAGAAGGTCAAGAGAAA 58.088 34.615 12.72 0.00 40.67 2.52
93 94 7.821846 ACTCATGATTAGAAGGTCAAGAGAAAC 59.178 37.037 12.72 0.00 40.67 2.78
94 95 7.106239 TCATGATTAGAAGGTCAAGAGAAACC 58.894 38.462 0.00 0.00 35.69 3.27
95 96 5.805728 TGATTAGAAGGTCAAGAGAAACCC 58.194 41.667 0.00 0.00 36.11 4.11
96 97 4.635699 TTAGAAGGTCAAGAGAAACCCC 57.364 45.455 0.00 0.00 36.11 4.95
97 98 2.707554 AGAAGGTCAAGAGAAACCCCT 58.292 47.619 0.00 0.00 36.11 4.79
98 99 3.056832 AGAAGGTCAAGAGAAACCCCTT 58.943 45.455 0.00 0.00 36.11 3.95
99 100 3.073209 AGAAGGTCAAGAGAAACCCCTTC 59.927 47.826 7.92 7.92 45.29 3.46
100 101 1.705745 AGGTCAAGAGAAACCCCTTCC 59.294 52.381 0.00 0.00 36.11 3.46
101 102 1.705745 GGTCAAGAGAAACCCCTTCCT 59.294 52.381 0.00 0.00 34.21 3.36
102 103 2.553247 GGTCAAGAGAAACCCCTTCCTG 60.553 54.545 0.00 0.00 34.21 3.86
103 104 1.073923 TCAAGAGAAACCCCTTCCTGC 59.926 52.381 0.00 0.00 34.21 4.85
104 105 0.405973 AAGAGAAACCCCTTCCTGCC 59.594 55.000 0.00 0.00 34.21 4.85
105 106 1.377333 GAGAAACCCCTTCCTGCCG 60.377 63.158 0.00 0.00 34.21 5.69
106 107 1.838073 GAGAAACCCCTTCCTGCCGA 61.838 60.000 0.00 0.00 34.21 5.54
107 108 1.674651 GAAACCCCTTCCTGCCGAC 60.675 63.158 0.00 0.00 0.00 4.79
108 109 3.546714 AAACCCCTTCCTGCCGACG 62.547 63.158 0.00 0.00 0.00 5.12
110 111 4.016706 CCCCTTCCTGCCGACGTT 62.017 66.667 0.00 0.00 0.00 3.99
111 112 2.032071 CCCTTCCTGCCGACGTTT 59.968 61.111 0.00 0.00 0.00 3.60
112 113 1.599797 CCCTTCCTGCCGACGTTTT 60.600 57.895 0.00 0.00 0.00 2.43
113 114 1.574702 CCCTTCCTGCCGACGTTTTC 61.575 60.000 0.00 0.00 0.00 2.29
114 115 0.602905 CCTTCCTGCCGACGTTTTCT 60.603 55.000 0.00 0.00 0.00 2.52
115 116 0.512952 CTTCCTGCCGACGTTTTCTG 59.487 55.000 0.00 0.00 0.00 3.02
116 117 1.503818 TTCCTGCCGACGTTTTCTGC 61.504 55.000 0.00 0.00 35.10 4.26
117 118 2.250939 CCTGCCGACGTTTTCTGCA 61.251 57.895 0.00 0.00 41.72 4.41
118 119 1.646540 CTGCCGACGTTTTCTGCAA 59.353 52.632 0.00 0.00 43.15 4.08
119 120 0.657368 CTGCCGACGTTTTCTGCAAC 60.657 55.000 0.00 0.00 43.15 4.17
120 121 1.092921 TGCCGACGTTTTCTGCAACT 61.093 50.000 0.00 0.00 41.09 3.16
121 122 0.657368 GCCGACGTTTTCTGCAACTG 60.657 55.000 0.00 0.00 34.68 3.16
122 123 0.934496 CCGACGTTTTCTGCAACTGA 59.066 50.000 0.00 0.00 0.00 3.41
123 124 1.070577 CCGACGTTTTCTGCAACTGAG 60.071 52.381 0.00 0.00 0.00 3.35
124 125 1.657538 CGACGTTTTCTGCAACTGAGC 60.658 52.381 0.00 0.00 0.00 4.26
125 126 0.663153 ACGTTTTCTGCAACTGAGCC 59.337 50.000 0.00 0.00 0.00 4.70
126 127 0.947244 CGTTTTCTGCAACTGAGCCT 59.053 50.000 0.00 0.00 0.00 4.58
127 128 2.143122 CGTTTTCTGCAACTGAGCCTA 58.857 47.619 0.00 0.00 0.00 3.93
128 129 2.744202 CGTTTTCTGCAACTGAGCCTAT 59.256 45.455 0.00 0.00 0.00 2.57
129 130 3.425359 CGTTTTCTGCAACTGAGCCTATG 60.425 47.826 0.00 0.00 0.00 2.23
130 131 3.423539 TTTCTGCAACTGAGCCTATGT 57.576 42.857 0.00 0.00 0.00 2.29
131 132 3.423539 TTCTGCAACTGAGCCTATGTT 57.576 42.857 0.00 0.00 0.00 2.71
132 133 3.423539 TCTGCAACTGAGCCTATGTTT 57.576 42.857 0.00 0.00 0.00 2.83
133 134 3.754965 TCTGCAACTGAGCCTATGTTTT 58.245 40.909 0.00 0.00 0.00 2.43
134 135 3.503363 TCTGCAACTGAGCCTATGTTTTG 59.497 43.478 0.00 0.00 0.00 2.44
135 136 3.485394 TGCAACTGAGCCTATGTTTTGA 58.515 40.909 0.00 0.00 0.00 2.69
136 137 3.888323 TGCAACTGAGCCTATGTTTTGAA 59.112 39.130 0.00 0.00 0.00 2.69
137 138 4.340666 TGCAACTGAGCCTATGTTTTGAAA 59.659 37.500 0.00 0.00 0.00 2.69
138 139 5.163468 TGCAACTGAGCCTATGTTTTGAAAA 60.163 36.000 0.00 0.00 0.00 2.29
139 140 5.752955 GCAACTGAGCCTATGTTTTGAAAAA 59.247 36.000 0.00 0.00 0.00 1.94
140 141 6.074142 GCAACTGAGCCTATGTTTTGAAAAAG 60.074 38.462 0.00 0.00 0.00 2.27
141 142 6.089249 ACTGAGCCTATGTTTTGAAAAAGG 57.911 37.500 3.14 3.14 0.00 3.11
142 143 4.881920 TGAGCCTATGTTTTGAAAAAGGC 58.118 39.130 19.22 19.22 36.38 4.35
143 144 3.913089 AGCCTATGTTTTGAAAAAGGCG 58.087 40.909 20.15 0.44 39.26 5.52
144 145 2.993220 GCCTATGTTTTGAAAAAGGCGG 59.007 45.455 14.06 4.98 29.63 6.13
145 146 3.305744 GCCTATGTTTTGAAAAAGGCGGA 60.306 43.478 14.06 0.00 29.63 5.54
146 147 4.485163 CCTATGTTTTGAAAAAGGCGGAG 58.515 43.478 0.00 0.00 0.00 4.63
147 148 4.217550 CCTATGTTTTGAAAAAGGCGGAGA 59.782 41.667 0.00 0.00 0.00 3.71
148 149 4.664150 ATGTTTTGAAAAAGGCGGAGAA 57.336 36.364 0.00 0.00 0.00 2.87
149 150 4.664150 TGTTTTGAAAAAGGCGGAGAAT 57.336 36.364 0.00 0.00 0.00 2.40
150 151 4.616953 TGTTTTGAAAAAGGCGGAGAATC 58.383 39.130 0.00 0.00 0.00 2.52
151 152 3.552604 TTTGAAAAAGGCGGAGAATCG 57.447 42.857 0.00 0.00 34.37 3.34
152 153 2.178912 TGAAAAAGGCGGAGAATCGT 57.821 45.000 0.00 0.00 34.37 3.73
153 154 1.804151 TGAAAAAGGCGGAGAATCGTG 59.196 47.619 0.00 0.00 34.37 4.35
154 155 0.521735 AAAAAGGCGGAGAATCGTGC 59.478 50.000 0.00 0.00 36.57 5.34
155 156 1.635663 AAAAGGCGGAGAATCGTGCG 61.636 55.000 0.00 0.00 37.95 5.34
156 157 4.514577 AGGCGGAGAATCGTGCGG 62.515 66.667 0.00 0.00 37.95 5.69
159 160 3.257561 CGGAGAATCGTGCGGCTG 61.258 66.667 0.00 0.00 34.37 4.85
160 161 2.892425 GGAGAATCGTGCGGCTGG 60.892 66.667 0.00 0.00 34.37 4.85
161 162 2.892425 GAGAATCGTGCGGCTGGG 60.892 66.667 0.00 0.00 0.00 4.45
162 163 3.371097 GAGAATCGTGCGGCTGGGA 62.371 63.158 0.00 0.00 0.00 4.37
163 164 2.892425 GAATCGTGCGGCTGGGAG 60.892 66.667 0.00 0.00 0.00 4.30
164 165 4.473520 AATCGTGCGGCTGGGAGG 62.474 66.667 0.00 0.00 0.00 4.30
181 182 4.286320 GGCGATGGCGACGAGGAT 62.286 66.667 0.00 0.00 41.24 3.24
182 183 3.032609 GCGATGGCGACGAGGATG 61.033 66.667 0.00 0.00 40.82 3.51
183 184 2.355126 CGATGGCGACGAGGATGG 60.355 66.667 0.00 0.00 40.82 3.51
184 185 2.663188 GATGGCGACGAGGATGGC 60.663 66.667 0.00 0.00 0.00 4.40
185 186 4.592192 ATGGCGACGAGGATGGCG 62.592 66.667 0.00 0.00 0.00 5.69
217 218 3.371063 GGGGACGTCTGTGAGCGA 61.371 66.667 16.46 0.00 0.00 4.93
218 219 2.126424 GGGACGTCTGTGAGCGAC 60.126 66.667 16.46 0.00 0.00 5.19
219 220 2.643272 GGACGTCTGTGAGCGACA 59.357 61.111 16.46 0.00 0.00 4.35
232 233 3.827898 CGACAGGGGCGGAGACTC 61.828 72.222 0.00 0.00 32.70 3.36
233 234 3.827898 GACAGGGGCGGAGACTCG 61.828 72.222 0.00 0.00 32.70 4.18
234 235 4.680537 ACAGGGGCGGAGACTCGT 62.681 66.667 0.00 0.00 32.70 4.18
235 236 4.135153 CAGGGGCGGAGACTCGTG 62.135 72.222 0.00 0.00 32.70 4.35
236 237 4.680537 AGGGGCGGAGACTCGTGT 62.681 66.667 0.00 0.00 32.70 4.49
237 238 4.436998 GGGGCGGAGACTCGTGTG 62.437 72.222 0.00 0.00 32.70 3.82
238 239 4.436998 GGGCGGAGACTCGTGTGG 62.437 72.222 0.00 0.00 32.70 4.17
239 240 3.681835 GGCGGAGACTCGTGTGGT 61.682 66.667 0.00 0.00 0.00 4.16
240 241 2.338984 GCGGAGACTCGTGTGGTT 59.661 61.111 0.00 0.00 0.00 3.67
241 242 1.582968 GCGGAGACTCGTGTGGTTA 59.417 57.895 0.00 0.00 0.00 2.85
242 243 0.456312 GCGGAGACTCGTGTGGTTAG 60.456 60.000 0.00 0.00 0.00 2.34
243 244 0.170561 CGGAGACTCGTGTGGTTAGG 59.829 60.000 0.00 0.00 0.00 2.69
244 245 1.542492 GGAGACTCGTGTGGTTAGGA 58.458 55.000 0.00 0.00 0.00 2.94
245 246 1.473278 GGAGACTCGTGTGGTTAGGAG 59.527 57.143 0.00 0.00 38.26 3.69
246 247 1.473278 GAGACTCGTGTGGTTAGGAGG 59.527 57.143 0.00 0.00 37.00 4.30
247 248 0.531200 GACTCGTGTGGTTAGGAGGG 59.469 60.000 0.00 0.00 37.00 4.30
248 249 1.218316 CTCGTGTGGTTAGGAGGGC 59.782 63.158 0.00 0.00 0.00 5.19
249 250 2.125673 CGTGTGGTTAGGAGGGCG 60.126 66.667 0.00 0.00 0.00 6.13
250 251 2.642254 CGTGTGGTTAGGAGGGCGA 61.642 63.158 0.00 0.00 0.00 5.54
251 252 1.079336 GTGTGGTTAGGAGGGCGAC 60.079 63.158 0.00 0.00 0.00 5.19
252 253 2.183555 GTGGTTAGGAGGGCGACG 59.816 66.667 0.00 0.00 0.00 5.12
253 254 3.072468 TGGTTAGGAGGGCGACGG 61.072 66.667 0.00 0.00 0.00 4.79
254 255 4.525949 GGTTAGGAGGGCGACGGC 62.526 72.222 13.84 13.84 38.90 5.68
255 256 4.867599 GTTAGGAGGGCGACGGCG 62.868 72.222 6.12 6.12 41.24 6.46
265 266 2.956964 CGACGGCGCTGAGGATTC 60.957 66.667 25.98 8.60 0.00 2.52
266 267 2.496817 GACGGCGCTGAGGATTCT 59.503 61.111 25.98 0.00 0.00 2.40
267 268 1.734137 GACGGCGCTGAGGATTCTA 59.266 57.895 25.98 0.00 0.00 2.10
268 269 0.318275 GACGGCGCTGAGGATTCTAG 60.318 60.000 25.98 0.00 0.00 2.43
269 270 1.038130 ACGGCGCTGAGGATTCTAGT 61.038 55.000 25.98 0.00 0.00 2.57
270 271 0.318275 CGGCGCTGAGGATTCTAGTC 60.318 60.000 11.90 0.00 0.00 2.59
271 272 0.747255 GGCGCTGAGGATTCTAGTCA 59.253 55.000 7.64 0.00 0.00 3.41
272 273 1.269517 GGCGCTGAGGATTCTAGTCAG 60.270 57.143 7.64 3.51 40.66 3.51
273 274 1.678627 GCGCTGAGGATTCTAGTCAGA 59.321 52.381 10.61 0.00 40.21 3.27
274 275 2.295909 GCGCTGAGGATTCTAGTCAGAT 59.704 50.000 10.61 0.00 40.21 2.90
275 276 3.611530 GCGCTGAGGATTCTAGTCAGATC 60.612 52.174 10.61 1.84 40.21 2.75
276 277 3.820467 CGCTGAGGATTCTAGTCAGATCT 59.180 47.826 10.61 0.00 40.21 2.75
277 278 4.083324 CGCTGAGGATTCTAGTCAGATCTC 60.083 50.000 10.61 3.54 40.21 2.75
278 279 4.083324 GCTGAGGATTCTAGTCAGATCTCG 60.083 50.000 10.61 0.00 40.21 4.04
279 280 3.818210 TGAGGATTCTAGTCAGATCTCGC 59.182 47.826 0.00 0.00 31.11 5.03
280 281 3.153919 AGGATTCTAGTCAGATCTCGCC 58.846 50.000 0.00 0.00 0.00 5.54
281 282 2.095466 GGATTCTAGTCAGATCTCGCCG 60.095 54.545 0.00 0.00 0.00 6.46
282 283 1.309950 TTCTAGTCAGATCTCGCCGG 58.690 55.000 0.00 0.00 0.00 6.13
283 284 0.468648 TCTAGTCAGATCTCGCCGGA 59.531 55.000 5.05 0.00 0.00 5.14
284 285 1.072489 TCTAGTCAGATCTCGCCGGAT 59.928 52.381 5.05 0.00 0.00 4.18
285 286 1.466950 CTAGTCAGATCTCGCCGGATC 59.533 57.143 5.05 0.00 41.55 3.36
286 287 1.175983 AGTCAGATCTCGCCGGATCC 61.176 60.000 5.05 0.00 42.02 3.36
287 288 2.256764 CAGATCTCGCCGGATCCG 59.743 66.667 27.65 27.65 42.02 4.18
288 289 2.113351 AGATCTCGCCGGATCCGA 59.887 61.111 35.42 15.67 42.02 4.55
289 290 2.255856 GATCTCGCCGGATCCGAC 59.744 66.667 35.42 23.92 42.83 4.79
290 291 3.596667 GATCTCGCCGGATCCGACG 62.597 68.421 33.39 33.39 45.93 5.12
301 302 3.872728 TCCGACGAGGATGACGCG 61.873 66.667 3.53 3.53 45.98 6.01
303 304 4.829518 CGACGAGGATGACGCGCA 62.830 66.667 5.73 5.73 46.87 6.09
304 305 2.951745 GACGAGGATGACGCGCAG 60.952 66.667 5.73 2.42 46.87 5.18
319 320 4.704833 CAGCAGGTGGTGGGGACG 62.705 72.222 1.04 0.00 39.67 4.79
321 322 4.265056 GCAGGTGGTGGGGACGTT 62.265 66.667 0.00 0.00 0.00 3.99
322 323 2.032071 CAGGTGGTGGGGACGTTC 59.968 66.667 0.00 0.00 0.00 3.95
323 324 3.622826 AGGTGGTGGGGACGTTCG 61.623 66.667 0.00 0.00 0.00 3.95
324 325 4.692475 GGTGGTGGGGACGTTCGG 62.692 72.222 0.00 0.00 0.00 4.30
325 326 4.692475 GTGGTGGGGACGTTCGGG 62.692 72.222 0.00 0.00 0.00 5.14
326 327 4.938074 TGGTGGGGACGTTCGGGA 62.938 66.667 0.00 0.00 0.00 5.14
327 328 4.078516 GGTGGGGACGTTCGGGAG 62.079 72.222 0.00 0.00 0.00 4.30
328 329 4.754667 GTGGGGACGTTCGGGAGC 62.755 72.222 0.00 0.00 0.00 4.70
334 335 4.052229 ACGTTCGGGAGCGTCAGG 62.052 66.667 4.71 0.00 44.74 3.86
335 336 4.796231 CGTTCGGGAGCGTCAGGG 62.796 72.222 0.00 0.00 0.00 4.45
336 337 4.452733 GTTCGGGAGCGTCAGGGG 62.453 72.222 0.00 0.00 0.00 4.79
345 346 3.827898 CGTCAGGGGGCTCGTCTC 61.828 72.222 0.00 0.00 0.00 3.36
346 347 3.827898 GTCAGGGGGCTCGTCTCG 61.828 72.222 0.00 0.00 0.00 4.04
360 361 4.387862 GCTCGTCTCGGAAACAAATAGAAA 59.612 41.667 0.00 0.00 0.00 2.52
363 364 6.218019 TCGTCTCGGAAACAAATAGAAAAGA 58.782 36.000 0.00 0.00 0.00 2.52
366 367 7.853929 CGTCTCGGAAACAAATAGAAAAGAAAA 59.146 33.333 0.00 0.00 0.00 2.29
413 414 3.770263 TTTGACTTGCATGCTAGATGC 57.230 42.857 31.42 20.33 44.76 3.91
429 430 5.406780 GCTAGATGCACGCTATGAAACTAAT 59.593 40.000 0.00 0.00 42.31 1.73
430 431 6.073548 GCTAGATGCACGCTATGAAACTAATT 60.074 38.462 0.00 0.00 42.31 1.40
431 432 6.292389 AGATGCACGCTATGAAACTAATTC 57.708 37.500 0.00 0.00 38.60 2.17
482 483 4.320023 AGCGGTGTGTGTATAATGTCAAA 58.680 39.130 0.00 0.00 0.00 2.69
484 485 5.414454 AGCGGTGTGTGTATAATGTCAAAAT 59.586 36.000 0.00 0.00 0.00 1.82
488 489 9.220635 CGGTGTGTGTATAATGTCAAAATTATG 57.779 33.333 0.00 0.00 35.05 1.90
522 523 4.962155 GCACATGCTATAAACTACTCCCT 58.038 43.478 0.00 0.00 38.21 4.20
523 524 4.991687 GCACATGCTATAAACTACTCCCTC 59.008 45.833 0.00 0.00 38.21 4.30
524 525 5.542779 CACATGCTATAAACTACTCCCTCC 58.457 45.833 0.00 0.00 0.00 4.30
525 526 5.070446 CACATGCTATAAACTACTCCCTCCA 59.930 44.000 0.00 0.00 0.00 3.86
526 527 5.846714 ACATGCTATAAACTACTCCCTCCAT 59.153 40.000 0.00 0.00 0.00 3.41
527 528 6.330250 ACATGCTATAAACTACTCCCTCCATT 59.670 38.462 0.00 0.00 0.00 3.16
528 529 7.512746 ACATGCTATAAACTACTCCCTCCATTA 59.487 37.037 0.00 0.00 0.00 1.90
529 530 7.299246 TGCTATAAACTACTCCCTCCATTAC 57.701 40.000 0.00 0.00 0.00 1.89
530 531 6.842280 TGCTATAAACTACTCCCTCCATTACA 59.158 38.462 0.00 0.00 0.00 2.41
531 532 7.346175 TGCTATAAACTACTCCCTCCATTACAA 59.654 37.037 0.00 0.00 0.00 2.41
532 533 8.208903 GCTATAAACTACTCCCTCCATTACAAA 58.791 37.037 0.00 0.00 0.00 2.83
537 538 9.462606 AAACTACTCCCTCCATTACAAAATAAG 57.537 33.333 0.00 0.00 0.00 1.73
538 539 7.054751 ACTACTCCCTCCATTACAAAATAAGC 58.945 38.462 0.00 0.00 0.00 3.09
539 540 5.826643 ACTCCCTCCATTACAAAATAAGCA 58.173 37.500 0.00 0.00 0.00 3.91
540 541 6.435164 ACTCCCTCCATTACAAAATAAGCAT 58.565 36.000 0.00 0.00 0.00 3.79
541 542 6.547510 ACTCCCTCCATTACAAAATAAGCATC 59.452 38.462 0.00 0.00 0.00 3.91
542 543 6.672593 TCCCTCCATTACAAAATAAGCATCT 58.327 36.000 0.00 0.00 0.00 2.90
543 544 6.772716 TCCCTCCATTACAAAATAAGCATCTC 59.227 38.462 0.00 0.00 0.00 2.75
544 545 6.547141 CCCTCCATTACAAAATAAGCATCTCA 59.453 38.462 0.00 0.00 0.00 3.27
545 546 7.068593 CCCTCCATTACAAAATAAGCATCTCAA 59.931 37.037 0.00 0.00 0.00 3.02
546 547 8.133627 CCTCCATTACAAAATAAGCATCTCAAG 58.866 37.037 0.00 0.00 0.00 3.02
547 548 7.483307 TCCATTACAAAATAAGCATCTCAAGC 58.517 34.615 0.00 0.00 0.00 4.01
548 549 7.340232 TCCATTACAAAATAAGCATCTCAAGCT 59.660 33.333 0.00 0.00 45.97 3.74
565 566 6.317789 TCAAGCTTGAGACACTTATTTTGG 57.682 37.500 25.16 0.00 32.50 3.28
566 567 5.241506 TCAAGCTTGAGACACTTATTTTGGG 59.758 40.000 25.16 0.00 32.50 4.12
567 568 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
568 569 4.762251 AGCTTGAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
569 570 4.378459 GCTTGAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
570 571 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
571 572 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
572 573 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
573 574 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
574 575 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
575 576 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
576 577 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
577 578 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
578 579 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
579 580 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
580 581 1.492764 TTTGGGACGGAGGGAGTATC 58.507 55.000 0.00 0.00 0.00 2.24
581 582 0.337082 TTGGGACGGAGGGAGTATCA 59.663 55.000 0.00 0.00 36.25 2.15
582 583 0.337082 TGGGACGGAGGGAGTATCAA 59.663 55.000 0.00 0.00 36.25 2.57
583 584 1.273381 TGGGACGGAGGGAGTATCAAA 60.273 52.381 0.00 0.00 36.25 2.69
584 585 2.047830 GGGACGGAGGGAGTATCAAAT 58.952 52.381 0.00 0.00 36.25 2.32
585 586 3.236896 GGGACGGAGGGAGTATCAAATA 58.763 50.000 0.00 0.00 36.25 1.40
586 587 3.838903 GGGACGGAGGGAGTATCAAATAT 59.161 47.826 0.00 0.00 36.25 1.28
649 654 5.238583 ACTCCCTTCGTTCAGAAATACTTG 58.761 41.667 0.00 0.00 38.57 3.16
651 656 5.235516 TCCCTTCGTTCAGAAATACTTGTC 58.764 41.667 0.00 0.00 38.57 3.18
657 662 6.263344 TCGTTCAGAAATACTTGTCGGATAG 58.737 40.000 0.00 0.00 0.00 2.08
660 665 8.074370 CGTTCAGAAATACTTGTCGGATAGATA 58.926 37.037 0.00 0.00 0.00 1.98
713 718 9.942526 AGATAGATCCATTTTTAACCATTTCCT 57.057 29.630 0.00 0.00 0.00 3.36
727 732 4.941873 ACCATTTCCTCGACAAGTATTTCC 59.058 41.667 0.00 0.00 0.00 3.13
733 738 4.994852 TCCTCGACAAGTATTTCCAAACTG 59.005 41.667 0.00 0.00 0.00 3.16
740 745 3.956744 AGTATTTCCAAACTGAGGGAGC 58.043 45.455 0.00 0.00 34.02 4.70
742 747 2.978156 TTTCCAAACTGAGGGAGCAT 57.022 45.000 0.00 0.00 34.02 3.79
745 750 4.591321 TTCCAAACTGAGGGAGCATTAT 57.409 40.909 0.00 0.00 34.02 1.28
748 753 4.018506 TCCAAACTGAGGGAGCATTATTCA 60.019 41.667 0.00 0.00 0.00 2.57
749 754 4.891756 CCAAACTGAGGGAGCATTATTCAT 59.108 41.667 0.00 0.00 0.00 2.57
750 755 5.221185 CCAAACTGAGGGAGCATTATTCATG 60.221 44.000 0.00 0.00 35.73 3.07
752 757 5.121380 ACTGAGGGAGCATTATTCATGTT 57.879 39.130 0.00 0.00 34.98 2.71
753 758 6.252599 ACTGAGGGAGCATTATTCATGTTA 57.747 37.500 0.00 0.00 34.98 2.41
754 759 6.845908 ACTGAGGGAGCATTATTCATGTTAT 58.154 36.000 0.00 0.00 34.98 1.89
756 761 8.609483 ACTGAGGGAGCATTATTCATGTTATAT 58.391 33.333 0.00 0.00 34.98 0.86
758 763 9.234827 TGAGGGAGCATTATTCATGTTATATTG 57.765 33.333 0.00 1.31 34.98 1.90
760 765 9.458727 AGGGAGCATTATTCATGTTATATTGAG 57.541 33.333 12.44 0.00 34.98 3.02
761 766 9.236006 GGGAGCATTATTCATGTTATATTGAGT 57.764 33.333 12.44 0.00 34.98 3.41
837 1408 9.668497 AACTTTAGCAACCTCTATTAAACTAGG 57.332 33.333 0.00 0.00 35.14 3.02
838 1409 9.043548 ACTTTAGCAACCTCTATTAAACTAGGA 57.956 33.333 7.21 0.00 33.16 2.94
841 1412 7.676683 AGCAACCTCTATTAAACTAGGATCA 57.323 36.000 7.21 0.00 33.16 2.92
842 1413 8.268878 AGCAACCTCTATTAAACTAGGATCAT 57.731 34.615 7.21 0.00 33.16 2.45
843 1414 8.153550 AGCAACCTCTATTAAACTAGGATCATG 58.846 37.037 7.21 0.00 33.16 3.07
844 1415 7.934120 GCAACCTCTATTAAACTAGGATCATGT 59.066 37.037 7.21 0.00 33.16 3.21
845 1416 9.482627 CAACCTCTATTAAACTAGGATCATGTC 57.517 37.037 7.21 0.00 33.16 3.06
846 1417 9.440761 AACCTCTATTAAACTAGGATCATGTCT 57.559 33.333 7.21 0.00 33.16 3.41
847 1418 8.865090 ACCTCTATTAAACTAGGATCATGTCTG 58.135 37.037 7.21 0.00 33.16 3.51
848 1419 8.865090 CCTCTATTAAACTAGGATCATGTCTGT 58.135 37.037 0.00 0.00 0.00 3.41
849 1420 9.689976 CTCTATTAAACTAGGATCATGTCTGTG 57.310 37.037 0.00 0.00 0.00 3.66
850 1421 9.421399 TCTATTAAACTAGGATCATGTCTGTGA 57.579 33.333 0.00 0.00 0.00 3.58
853 1424 9.911788 ATTAAACTAGGATCATGTCTGTGATTT 57.088 29.630 0.00 0.00 38.88 2.17
854 1425 7.621428 AAACTAGGATCATGTCTGTGATTTG 57.379 36.000 0.00 0.00 38.88 2.32
855 1426 6.305272 ACTAGGATCATGTCTGTGATTTGT 57.695 37.500 0.00 0.00 38.88 2.83
856 1427 6.344500 ACTAGGATCATGTCTGTGATTTGTC 58.656 40.000 0.00 0.00 38.88 3.18
857 1428 5.432680 AGGATCATGTCTGTGATTTGTCT 57.567 39.130 0.00 0.00 38.88 3.41
858 1429 6.550938 AGGATCATGTCTGTGATTTGTCTA 57.449 37.500 0.00 0.00 38.88 2.59
859 1430 6.580788 AGGATCATGTCTGTGATTTGTCTAG 58.419 40.000 0.00 0.00 38.88 2.43
860 1431 6.155910 AGGATCATGTCTGTGATTTGTCTAGT 59.844 38.462 0.00 0.00 38.88 2.57
861 1432 6.820656 GGATCATGTCTGTGATTTGTCTAGTT 59.179 38.462 0.00 0.00 38.88 2.24
862 1433 7.335422 GGATCATGTCTGTGATTTGTCTAGTTT 59.665 37.037 0.00 0.00 38.88 2.66
863 1434 7.658179 TCATGTCTGTGATTTGTCTAGTTTC 57.342 36.000 0.00 0.00 0.00 2.78
864 1435 7.216494 TCATGTCTGTGATTTGTCTAGTTTCA 58.784 34.615 0.00 0.00 0.00 2.69
865 1436 6.844696 TGTCTGTGATTTGTCTAGTTTCAC 57.155 37.500 0.00 0.00 37.73 3.18
866 1437 6.582636 TGTCTGTGATTTGTCTAGTTTCACT 58.417 36.000 0.00 0.00 38.00 3.41
867 1438 6.479990 TGTCTGTGATTTGTCTAGTTTCACTG 59.520 38.462 0.00 0.00 38.00 3.66
868 1439 5.991606 TCTGTGATTTGTCTAGTTTCACTGG 59.008 40.000 0.00 0.00 38.00 4.00
869 1440 5.680619 TGTGATTTGTCTAGTTTCACTGGT 58.319 37.500 0.00 0.00 38.00 4.00
870 1441 6.119536 TGTGATTTGTCTAGTTTCACTGGTT 58.880 36.000 0.00 0.00 38.00 3.67
871 1442 6.260050 TGTGATTTGTCTAGTTTCACTGGTTC 59.740 38.462 0.00 0.00 38.00 3.62
872 1443 6.483640 GTGATTTGTCTAGTTTCACTGGTTCT 59.516 38.462 0.00 0.00 35.09 3.01
873 1444 7.012421 GTGATTTGTCTAGTTTCACTGGTTCTT 59.988 37.037 0.00 0.00 35.09 2.52
874 1445 6.920569 TTTGTCTAGTTTCACTGGTTCTTC 57.079 37.500 0.00 0.00 0.00 2.87
875 1446 4.957296 TGTCTAGTTTCACTGGTTCTTCC 58.043 43.478 0.00 0.00 0.00 3.46
876 1447 3.988517 GTCTAGTTTCACTGGTTCTTCCG 59.011 47.826 0.00 0.00 39.52 4.30
877 1448 1.594331 AGTTTCACTGGTTCTTCCGC 58.406 50.000 0.00 0.00 39.52 5.54
878 1449 1.134220 AGTTTCACTGGTTCTTCCGCA 60.134 47.619 0.00 0.00 39.52 5.69
879 1450 1.264288 GTTTCACTGGTTCTTCCGCAG 59.736 52.381 0.00 0.00 39.52 5.18
916 1487 3.069289 CCAAAGTAGTTCCCCGTTACAC 58.931 50.000 0.00 0.00 0.00 2.90
927 1498 3.372795 CGTTACACACGGGGCATAT 57.627 52.632 0.00 0.00 45.89 1.78
929 1500 1.471851 CGTTACACACGGGGCATATCA 60.472 52.381 0.00 0.00 45.89 2.15
944 1515 0.638292 TATCAGTTCCCCGTACCCCT 59.362 55.000 0.00 0.00 0.00 4.79
945 1516 0.638292 ATCAGTTCCCCGTACCCCTA 59.362 55.000 0.00 0.00 0.00 3.53
978 1549 1.814169 GTTCCCCGTCGCATTCTCC 60.814 63.158 0.00 0.00 0.00 3.71
988 1559 2.185350 CATTCTCCGCAGCCTCGT 59.815 61.111 0.00 0.00 0.00 4.18
1233 1804 4.760047 CTCAAGACCCACCCGCCG 62.760 72.222 0.00 0.00 0.00 6.46
1697 2277 1.003866 GCTCGACGAAATGCCCATTAC 60.004 52.381 0.00 0.00 0.00 1.89
1724 2309 1.160137 CTTGCTTACCTGTGCACTCC 58.840 55.000 19.41 0.00 39.05 3.85
1726 2311 1.374947 GCTTACCTGTGCACTCCCA 59.625 57.895 19.41 0.00 0.00 4.37
1730 2315 2.725203 TACCTGTGCACTCCCAACGC 62.725 60.000 19.41 0.00 0.00 4.84
1736 2321 2.978010 CACTCCCAACGCGGCTTT 60.978 61.111 12.47 0.00 0.00 3.51
1762 2347 1.942657 CGATGGAATGCTTGAACGGAT 59.057 47.619 0.00 0.00 0.00 4.18
1768 2353 0.749454 ATGCTTGAACGGATGGCTCC 60.749 55.000 0.00 0.00 38.29 4.70
1770 2355 0.178068 GCTTGAACGGATGGCTCCTA 59.822 55.000 0.00 0.00 39.65 2.94
1771 2356 1.808133 GCTTGAACGGATGGCTCCTAG 60.808 57.143 0.00 0.00 39.65 3.02
1773 2358 1.112113 TGAACGGATGGCTCCTAGAC 58.888 55.000 0.00 0.00 39.65 2.59
1774 2359 1.112113 GAACGGATGGCTCCTAGACA 58.888 55.000 0.00 0.00 37.84 3.41
1776 2361 1.794714 ACGGATGGCTCCTAGACATT 58.205 50.000 0.00 0.00 45.82 2.71
1778 2363 2.158900 ACGGATGGCTCCTAGACATTTG 60.159 50.000 0.00 0.00 45.82 2.32
1779 2364 2.225467 GGATGGCTCCTAGACATTTGC 58.775 52.381 0.00 0.00 45.82 3.68
1780 2365 2.421952 GGATGGCTCCTAGACATTTGCA 60.422 50.000 0.00 0.00 45.82 4.08
1781 2366 2.113860 TGGCTCCTAGACATTTGCAC 57.886 50.000 0.00 0.00 0.00 4.57
1782 2367 1.630369 TGGCTCCTAGACATTTGCACT 59.370 47.619 0.00 0.00 0.00 4.40
1783 2368 2.012673 GGCTCCTAGACATTTGCACTG 58.987 52.381 0.00 0.00 0.00 3.66
1784 2369 1.399791 GCTCCTAGACATTTGCACTGC 59.600 52.381 0.00 0.00 0.00 4.40
1785 2370 2.012673 CTCCTAGACATTTGCACTGCC 58.987 52.381 0.00 0.00 0.00 4.85
1786 2371 1.098050 CCTAGACATTTGCACTGCCC 58.902 55.000 0.00 0.00 0.00 5.36
1787 2372 1.098050 CTAGACATTTGCACTGCCCC 58.902 55.000 0.00 0.00 0.00 5.80
1819 2404 9.755804 TTTTCATGTTCATTTACACTGCATAAA 57.244 25.926 0.00 0.00 0.00 1.40
1829 2414 9.454585 CATTTACACTGCATAAATGATAGTTGG 57.545 33.333 19.70 0.00 46.27 3.77
1830 2415 5.505173 ACACTGCATAAATGATAGTTGGC 57.495 39.130 0.00 0.00 0.00 4.52
1832 2417 3.891366 ACTGCATAAATGATAGTTGGCCC 59.109 43.478 0.00 0.00 0.00 5.80
1834 2419 3.117169 TGCATAAATGATAGTTGGCCCCT 60.117 43.478 0.00 0.00 0.00 4.79
1835 2420 4.105537 TGCATAAATGATAGTTGGCCCCTA 59.894 41.667 0.00 0.03 0.00 3.53
1836 2421 4.702131 GCATAAATGATAGTTGGCCCCTAG 59.298 45.833 0.00 0.00 0.00 3.02
1837 2422 5.514834 GCATAAATGATAGTTGGCCCCTAGA 60.515 44.000 0.00 0.00 0.00 2.43
1838 2423 4.439253 AAATGATAGTTGGCCCCTAGAC 57.561 45.455 0.00 0.42 0.00 2.59
1839 2424 2.561209 TGATAGTTGGCCCCTAGACA 57.439 50.000 0.00 3.03 0.00 3.41
1840 2425 3.060479 TGATAGTTGGCCCCTAGACAT 57.940 47.619 0.00 0.00 0.00 3.06
1841 2426 2.972713 TGATAGTTGGCCCCTAGACATC 59.027 50.000 0.00 0.00 0.00 3.06
1845 2430 2.025887 AGTTGGCCCCTAGACATCTTTG 60.026 50.000 0.00 0.00 0.00 2.77
1893 2516 5.306937 ACGTAATCCTTGGACCATCATATCA 59.693 40.000 0.00 0.00 0.00 2.15
2220 2843 5.416952 ACCCAACATTTTCTCATCTAAGCTG 59.583 40.000 0.00 0.00 0.00 4.24
2575 3198 3.567478 ATACTCAGATTGGGTTCTGCC 57.433 47.619 0.00 0.00 42.37 4.85
2596 3219 1.083401 GCATTCTTCATACGCGGCG 60.083 57.895 22.36 22.36 0.00 6.46
2620 3243 2.107950 TCTTTGGGTTATCACCTGCG 57.892 50.000 0.00 0.00 43.65 5.18
2952 3583 2.586648 ACTTGGGGTTTCCTTAGCTG 57.413 50.000 0.00 0.00 36.20 4.24
2956 3587 2.627933 TGGGGTTTCCTTAGCTGTACT 58.372 47.619 0.00 0.00 36.20 2.73
3039 3672 6.533819 TTGACACAAAGTTATTAGACACCG 57.466 37.500 0.00 0.00 0.00 4.94
3067 3700 4.771577 TGTGATTACTTTTCCATGGCATGT 59.228 37.500 24.80 8.83 0.00 3.21
3174 3807 4.952335 AGATTGCTGAATTTGGAACCTAGG 59.048 41.667 7.41 7.41 0.00 3.02
3185 3818 5.562298 TTGGAACCTAGGATGTATAAGCC 57.438 43.478 17.98 0.00 0.00 4.35
3204 3837 5.000012 AGCCGACTCTTTATGTTAGTGAG 58.000 43.478 0.00 0.00 0.00 3.51
3274 3907 0.452987 TGAAAGCGCATCATTGGAGC 59.547 50.000 11.47 0.00 0.00 4.70
3290 3923 0.103208 GAGCACTATGGAGGTCACGG 59.897 60.000 1.01 0.00 32.37 4.94
3416 4103 9.701098 TTGTAGTTTGTACCAAGTAATCTACAG 57.299 33.333 10.94 0.00 37.25 2.74
3417 4104 8.863086 TGTAGTTTGTACCAAGTAATCTACAGT 58.137 33.333 8.59 0.00 33.13 3.55
3418 4105 9.702494 GTAGTTTGTACCAAGTAATCTACAGTT 57.298 33.333 0.00 0.00 0.00 3.16
3421 4108 8.833493 GTTTGTACCAAGTAATCTACAGTTGTT 58.167 33.333 0.00 0.00 0.00 2.83
3574 4297 6.368213 AGTTATCGTGAAAATTTTGGACGAC 58.632 36.000 25.63 18.01 41.44 4.34
3665 4389 2.215942 AATCAAACAGGGGCTGGTAC 57.784 50.000 0.00 0.00 35.51 3.34
3783 4508 2.205022 TGTTGCATTTCCTCTCCCTG 57.795 50.000 0.00 0.00 0.00 4.45
3848 4573 5.713025 CTCACCAATGGTAAAACAATCAGG 58.287 41.667 3.85 0.00 32.11 3.86
3868 4593 3.135994 GGTAGAAAACCGCTGAAACAGA 58.864 45.455 2.81 0.00 38.88 3.41
3872 4597 1.217882 AAACCGCTGAAACAGACGAG 58.782 50.000 13.60 8.56 34.71 4.18
3891 4616 1.609501 CTCTCCCTTGACCGACCCA 60.610 63.158 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.168496 GGCTGAAGGTAACCTTTTCCC 58.832 52.381 0.00 0.00 44.82 3.97
1 2 1.810755 CGGCTGAAGGTAACCTTTTCC 59.189 52.381 0.00 0.00 44.82 3.13
2 3 1.810755 CCGGCTGAAGGTAACCTTTTC 59.189 52.381 0.00 0.00 44.82 2.29
3 4 1.905637 CCGGCTGAAGGTAACCTTTT 58.094 50.000 0.00 0.00 44.82 2.27
4 5 0.608308 GCCGGCTGAAGGTAACCTTT 60.608 55.000 22.15 0.00 44.82 3.11
6 7 2.669240 GCCGGCTGAAGGTAACCT 59.331 61.111 22.15 0.00 33.87 3.50
7 8 2.437895 GGCCGGCTGAAGGTAACC 60.438 66.667 28.56 0.41 37.17 2.85
8 9 2.588856 ATCGGCCGGCTGAAGGTAAC 62.589 60.000 39.93 12.88 34.70 2.50
9 10 2.306255 GATCGGCCGGCTGAAGGTAA 62.306 60.000 39.93 18.49 34.70 2.85
10 11 2.762459 ATCGGCCGGCTGAAGGTA 60.762 61.111 39.93 19.30 34.70 3.08
11 12 4.162690 GATCGGCCGGCTGAAGGT 62.163 66.667 39.93 25.43 34.70 3.50
47 48 3.659089 AATCCAACGGACGCGGAGG 62.659 63.158 12.47 0.15 32.98 4.30
48 49 2.125673 AATCCAACGGACGCGGAG 60.126 61.111 12.47 3.25 32.98 4.63
49 50 2.433491 CAATCCAACGGACGCGGA 60.433 61.111 12.47 6.01 32.98 5.54
50 51 2.433491 TCAATCCAACGGACGCGG 60.433 61.111 12.47 0.00 32.98 6.46
51 52 1.683790 GAGTCAATCCAACGGACGCG 61.684 60.000 3.53 3.53 36.68 6.01
52 53 0.669318 TGAGTCAATCCAACGGACGC 60.669 55.000 0.00 0.00 36.68 5.19
53 54 1.660607 CATGAGTCAATCCAACGGACG 59.339 52.381 0.00 0.00 36.68 4.79
54 55 2.972625 TCATGAGTCAATCCAACGGAC 58.027 47.619 0.00 0.00 32.98 4.79
55 56 3.912496 ATCATGAGTCAATCCAACGGA 57.088 42.857 0.09 0.00 35.55 4.69
56 57 5.359756 TCTAATCATGAGTCAATCCAACGG 58.640 41.667 0.00 0.00 0.00 4.44
57 58 6.018425 CCTTCTAATCATGAGTCAATCCAACG 60.018 42.308 0.00 0.00 0.00 4.10
58 59 6.825721 ACCTTCTAATCATGAGTCAATCCAAC 59.174 38.462 0.00 0.00 0.00 3.77
59 60 6.962182 ACCTTCTAATCATGAGTCAATCCAA 58.038 36.000 0.00 0.00 0.00 3.53
60 61 6.156775 TGACCTTCTAATCATGAGTCAATCCA 59.843 38.462 0.00 0.00 30.35 3.41
61 62 6.586344 TGACCTTCTAATCATGAGTCAATCC 58.414 40.000 0.00 0.00 30.35 3.01
62 63 7.984050 TCTTGACCTTCTAATCATGAGTCAATC 59.016 37.037 18.94 4.60 40.71 2.67
63 64 7.855375 TCTTGACCTTCTAATCATGAGTCAAT 58.145 34.615 18.94 0.00 40.71 2.57
64 65 7.179160 TCTCTTGACCTTCTAATCATGAGTCAA 59.821 37.037 18.08 18.08 43.00 3.18
65 66 6.665248 TCTCTTGACCTTCTAATCATGAGTCA 59.335 38.462 0.00 3.14 43.00 3.41
66 67 7.106439 TCTCTTGACCTTCTAATCATGAGTC 57.894 40.000 0.00 0.18 43.00 3.36
67 68 7.487822 TTCTCTTGACCTTCTAATCATGAGT 57.512 36.000 0.09 0.00 43.00 3.41
68 69 7.279758 GGTTTCTCTTGACCTTCTAATCATGAG 59.720 40.741 0.09 9.64 43.46 2.90
69 70 7.106239 GGTTTCTCTTGACCTTCTAATCATGA 58.894 38.462 0.00 0.00 33.08 3.07
70 71 6.317391 GGGTTTCTCTTGACCTTCTAATCATG 59.683 42.308 0.00 0.00 36.18 3.07
71 72 6.418946 GGGTTTCTCTTGACCTTCTAATCAT 58.581 40.000 0.00 0.00 36.18 2.45
72 73 5.280521 GGGGTTTCTCTTGACCTTCTAATCA 60.281 44.000 0.00 0.00 36.18 2.57
73 74 5.045505 AGGGGTTTCTCTTGACCTTCTAATC 60.046 44.000 0.00 0.00 36.18 1.75
74 75 4.852697 AGGGGTTTCTCTTGACCTTCTAAT 59.147 41.667 0.00 0.00 36.18 1.73
75 76 4.240323 AGGGGTTTCTCTTGACCTTCTAA 58.760 43.478 0.00 0.00 36.18 2.10
76 77 3.870559 AGGGGTTTCTCTTGACCTTCTA 58.129 45.455 0.00 0.00 36.18 2.10
77 78 2.707554 AGGGGTTTCTCTTGACCTTCT 58.292 47.619 0.00 0.00 36.18 2.85
78 79 3.413327 GAAGGGGTTTCTCTTGACCTTC 58.587 50.000 0.00 0.00 44.75 3.46
79 80 2.108425 GGAAGGGGTTTCTCTTGACCTT 59.892 50.000 0.00 0.00 40.75 3.50
80 81 1.705745 GGAAGGGGTTTCTCTTGACCT 59.294 52.381 0.00 0.00 36.18 3.85
81 82 1.705745 AGGAAGGGGTTTCTCTTGACC 59.294 52.381 0.00 0.00 36.03 4.02
82 83 2.784347 CAGGAAGGGGTTTCTCTTGAC 58.216 52.381 0.00 0.00 36.03 3.18
83 84 1.073923 GCAGGAAGGGGTTTCTCTTGA 59.926 52.381 0.00 0.00 36.03 3.02
84 85 1.539157 GCAGGAAGGGGTTTCTCTTG 58.461 55.000 0.00 0.00 36.03 3.02
85 86 0.405973 GGCAGGAAGGGGTTTCTCTT 59.594 55.000 0.00 0.00 36.03 2.85
86 87 1.842381 CGGCAGGAAGGGGTTTCTCT 61.842 60.000 0.00 0.00 36.03 3.10
87 88 1.377333 CGGCAGGAAGGGGTTTCTC 60.377 63.158 0.00 0.00 36.03 2.87
88 89 1.846124 TCGGCAGGAAGGGGTTTCT 60.846 57.895 0.00 0.00 36.03 2.52
89 90 1.674651 GTCGGCAGGAAGGGGTTTC 60.675 63.158 0.00 0.00 34.93 2.78
90 91 2.434774 GTCGGCAGGAAGGGGTTT 59.565 61.111 0.00 0.00 0.00 3.27
91 92 4.016706 CGTCGGCAGGAAGGGGTT 62.017 66.667 0.00 0.00 0.00 4.11
93 94 3.546714 AAACGTCGGCAGGAAGGGG 62.547 63.158 0.00 0.00 0.00 4.79
94 95 1.574702 GAAAACGTCGGCAGGAAGGG 61.575 60.000 0.00 0.00 0.00 3.95
95 96 0.602905 AGAAAACGTCGGCAGGAAGG 60.603 55.000 0.00 0.00 0.00 3.46
96 97 0.512952 CAGAAAACGTCGGCAGGAAG 59.487 55.000 0.00 0.00 0.00 3.46
97 98 1.503818 GCAGAAAACGTCGGCAGGAA 61.504 55.000 0.00 0.00 45.76 3.36
98 99 1.959226 GCAGAAAACGTCGGCAGGA 60.959 57.895 0.00 0.00 45.76 3.86
99 100 2.556287 GCAGAAAACGTCGGCAGG 59.444 61.111 0.00 0.00 45.76 4.85
102 103 0.657368 CAGTTGCAGAAAACGTCGGC 60.657 55.000 0.00 0.00 46.56 5.54
103 104 0.934496 TCAGTTGCAGAAAACGTCGG 59.066 50.000 0.00 0.00 35.13 4.79
104 105 1.657538 GCTCAGTTGCAGAAAACGTCG 60.658 52.381 0.00 0.00 35.13 5.12
105 106 1.334149 GGCTCAGTTGCAGAAAACGTC 60.334 52.381 0.00 0.00 35.13 4.34
106 107 0.663153 GGCTCAGTTGCAGAAAACGT 59.337 50.000 0.00 0.00 35.13 3.99
107 108 0.947244 AGGCTCAGTTGCAGAAAACG 59.053 50.000 0.00 0.00 35.13 3.60
108 109 3.503748 ACATAGGCTCAGTTGCAGAAAAC 59.496 43.478 0.00 0.00 34.04 2.43
109 110 3.754965 ACATAGGCTCAGTTGCAGAAAA 58.245 40.909 0.00 0.00 34.04 2.29
110 111 3.423539 ACATAGGCTCAGTTGCAGAAA 57.576 42.857 0.00 0.00 34.04 2.52
111 112 3.423539 AACATAGGCTCAGTTGCAGAA 57.576 42.857 0.00 0.00 34.04 3.02
112 113 3.423539 AAACATAGGCTCAGTTGCAGA 57.576 42.857 5.41 0.00 34.04 4.26
113 114 3.503363 TCAAAACATAGGCTCAGTTGCAG 59.497 43.478 5.41 0.60 34.04 4.41
114 115 3.485394 TCAAAACATAGGCTCAGTTGCA 58.515 40.909 5.41 0.00 34.04 4.08
115 116 4.503741 TTCAAAACATAGGCTCAGTTGC 57.496 40.909 5.41 0.00 0.00 4.17
116 117 6.421801 CCTTTTTCAAAACATAGGCTCAGTTG 59.578 38.462 5.41 0.00 0.00 3.16
117 118 6.515832 CCTTTTTCAAAACATAGGCTCAGTT 58.484 36.000 0.00 0.00 0.00 3.16
118 119 5.509670 GCCTTTTTCAAAACATAGGCTCAGT 60.510 40.000 14.50 0.00 34.50 3.41
119 120 4.925646 GCCTTTTTCAAAACATAGGCTCAG 59.074 41.667 14.50 0.00 34.50 3.35
120 121 4.558496 CGCCTTTTTCAAAACATAGGCTCA 60.558 41.667 18.01 0.00 34.91 4.26
121 122 3.920412 CGCCTTTTTCAAAACATAGGCTC 59.080 43.478 18.01 0.00 34.91 4.70
122 123 3.306019 CCGCCTTTTTCAAAACATAGGCT 60.306 43.478 18.01 0.00 34.91 4.58
123 124 2.993220 CCGCCTTTTTCAAAACATAGGC 59.007 45.455 12.44 12.44 34.19 3.93
124 125 4.217550 TCTCCGCCTTTTTCAAAACATAGG 59.782 41.667 0.00 0.00 0.00 2.57
125 126 5.371115 TCTCCGCCTTTTTCAAAACATAG 57.629 39.130 0.00 0.00 0.00 2.23
126 127 5.776173 TTCTCCGCCTTTTTCAAAACATA 57.224 34.783 0.00 0.00 0.00 2.29
127 128 4.664150 TTCTCCGCCTTTTTCAAAACAT 57.336 36.364 0.00 0.00 0.00 2.71
128 129 4.616953 GATTCTCCGCCTTTTTCAAAACA 58.383 39.130 0.00 0.00 0.00 2.83
129 130 3.668656 CGATTCTCCGCCTTTTTCAAAAC 59.331 43.478 0.00 0.00 0.00 2.43
130 131 3.316868 ACGATTCTCCGCCTTTTTCAAAA 59.683 39.130 0.00 0.00 0.00 2.44
131 132 2.882137 ACGATTCTCCGCCTTTTTCAAA 59.118 40.909 0.00 0.00 0.00 2.69
132 133 2.225491 CACGATTCTCCGCCTTTTTCAA 59.775 45.455 0.00 0.00 0.00 2.69
133 134 1.804151 CACGATTCTCCGCCTTTTTCA 59.196 47.619 0.00 0.00 0.00 2.69
134 135 1.465856 GCACGATTCTCCGCCTTTTTC 60.466 52.381 0.00 0.00 0.00 2.29
135 136 0.521735 GCACGATTCTCCGCCTTTTT 59.478 50.000 0.00 0.00 0.00 1.94
136 137 1.635663 CGCACGATTCTCCGCCTTTT 61.636 55.000 0.00 0.00 0.00 2.27
137 138 2.100631 CGCACGATTCTCCGCCTTT 61.101 57.895 0.00 0.00 0.00 3.11
138 139 2.509336 CGCACGATTCTCCGCCTT 60.509 61.111 0.00 0.00 0.00 4.35
139 140 4.514577 CCGCACGATTCTCCGCCT 62.515 66.667 0.00 0.00 0.00 5.52
142 143 3.257561 CAGCCGCACGATTCTCCG 61.258 66.667 0.00 0.00 0.00 4.63
143 144 2.892425 CCAGCCGCACGATTCTCC 60.892 66.667 0.00 0.00 0.00 3.71
144 145 2.892425 CCCAGCCGCACGATTCTC 60.892 66.667 0.00 0.00 0.00 2.87
145 146 3.376935 CTCCCAGCCGCACGATTCT 62.377 63.158 0.00 0.00 0.00 2.40
146 147 2.892425 CTCCCAGCCGCACGATTC 60.892 66.667 0.00 0.00 0.00 2.52
147 148 4.473520 CCTCCCAGCCGCACGATT 62.474 66.667 0.00 0.00 0.00 3.34
161 162 4.933064 CTCGTCGCCATCGCCCTC 62.933 72.222 0.00 0.00 35.26 4.30
164 165 4.286320 ATCCTCGTCGCCATCGCC 62.286 66.667 0.00 0.00 35.26 5.54
165 166 3.032609 CATCCTCGTCGCCATCGC 61.033 66.667 0.00 0.00 35.26 4.58
166 167 2.355126 CCATCCTCGTCGCCATCG 60.355 66.667 0.00 0.00 0.00 3.84
167 168 2.663188 GCCATCCTCGTCGCCATC 60.663 66.667 0.00 0.00 0.00 3.51
168 169 4.592192 CGCCATCCTCGTCGCCAT 62.592 66.667 0.00 0.00 0.00 4.40
195 196 4.436998 CACAGACGTCCCCGCCTC 62.437 72.222 13.01 0.00 37.70 4.70
196 197 4.988716 TCACAGACGTCCCCGCCT 62.989 66.667 13.01 0.00 37.70 5.52
197 198 4.436998 CTCACAGACGTCCCCGCC 62.437 72.222 13.01 0.00 37.70 6.13
199 200 4.778415 CGCTCACAGACGTCCCCG 62.778 72.222 13.01 3.64 40.83 5.73
200 201 3.371063 TCGCTCACAGACGTCCCC 61.371 66.667 13.01 0.00 0.00 4.81
201 202 2.126424 GTCGCTCACAGACGTCCC 60.126 66.667 13.01 0.00 0.00 4.46
202 203 2.643272 TGTCGCTCACAGACGTCC 59.357 61.111 13.01 0.00 41.24 4.79
215 216 3.827898 GAGTCTCCGCCCCTGTCG 61.828 72.222 0.00 0.00 0.00 4.35
216 217 3.827898 CGAGTCTCCGCCCCTGTC 61.828 72.222 0.00 0.00 0.00 3.51
217 218 4.680537 ACGAGTCTCCGCCCCTGT 62.681 66.667 0.00 0.00 0.00 4.00
218 219 4.135153 CACGAGTCTCCGCCCCTG 62.135 72.222 0.00 0.00 0.00 4.45
219 220 4.680537 ACACGAGTCTCCGCCCCT 62.681 66.667 0.00 0.00 0.00 4.79
220 221 4.436998 CACACGAGTCTCCGCCCC 62.437 72.222 0.00 0.00 0.00 5.80
221 222 4.436998 CCACACGAGTCTCCGCCC 62.437 72.222 0.00 0.00 0.00 6.13
222 223 1.870055 TAACCACACGAGTCTCCGCC 61.870 60.000 0.00 0.00 0.00 6.13
223 224 0.456312 CTAACCACACGAGTCTCCGC 60.456 60.000 0.00 0.00 0.00 5.54
224 225 0.170561 CCTAACCACACGAGTCTCCG 59.829 60.000 0.00 0.00 0.00 4.63
225 226 1.473278 CTCCTAACCACACGAGTCTCC 59.527 57.143 0.00 0.00 0.00 3.71
226 227 1.473278 CCTCCTAACCACACGAGTCTC 59.527 57.143 0.00 0.00 0.00 3.36
227 228 1.546961 CCTCCTAACCACACGAGTCT 58.453 55.000 0.00 0.00 0.00 3.24
228 229 0.531200 CCCTCCTAACCACACGAGTC 59.469 60.000 0.00 0.00 0.00 3.36
229 230 1.542187 GCCCTCCTAACCACACGAGT 61.542 60.000 0.00 0.00 0.00 4.18
230 231 1.218316 GCCCTCCTAACCACACGAG 59.782 63.158 0.00 0.00 0.00 4.18
231 232 2.642254 CGCCCTCCTAACCACACGA 61.642 63.158 0.00 0.00 0.00 4.35
232 233 2.125673 CGCCCTCCTAACCACACG 60.126 66.667 0.00 0.00 0.00 4.49
233 234 1.079336 GTCGCCCTCCTAACCACAC 60.079 63.158 0.00 0.00 0.00 3.82
234 235 2.642254 CGTCGCCCTCCTAACCACA 61.642 63.158 0.00 0.00 0.00 4.17
235 236 2.183555 CGTCGCCCTCCTAACCAC 59.816 66.667 0.00 0.00 0.00 4.16
236 237 3.072468 CCGTCGCCCTCCTAACCA 61.072 66.667 0.00 0.00 0.00 3.67
237 238 4.525949 GCCGTCGCCCTCCTAACC 62.526 72.222 0.00 0.00 0.00 2.85
238 239 4.867599 CGCCGTCGCCCTCCTAAC 62.868 72.222 0.00 0.00 0.00 2.34
248 249 2.060004 TAGAATCCTCAGCGCCGTCG 62.060 60.000 2.29 0.00 39.07 5.12
249 250 0.318275 CTAGAATCCTCAGCGCCGTC 60.318 60.000 2.29 0.00 0.00 4.79
250 251 1.038130 ACTAGAATCCTCAGCGCCGT 61.038 55.000 2.29 0.00 0.00 5.68
251 252 0.318275 GACTAGAATCCTCAGCGCCG 60.318 60.000 2.29 0.00 0.00 6.46
252 253 0.747255 TGACTAGAATCCTCAGCGCC 59.253 55.000 2.29 0.00 0.00 6.53
253 254 1.678627 TCTGACTAGAATCCTCAGCGC 59.321 52.381 0.00 0.00 32.88 5.92
254 255 3.820467 AGATCTGACTAGAATCCTCAGCG 59.180 47.826 0.00 0.00 36.32 5.18
255 256 4.083324 CGAGATCTGACTAGAATCCTCAGC 60.083 50.000 0.00 0.00 36.32 4.26
256 257 4.083324 GCGAGATCTGACTAGAATCCTCAG 60.083 50.000 0.00 0.00 36.32 3.35
257 258 3.818210 GCGAGATCTGACTAGAATCCTCA 59.182 47.826 0.00 0.00 36.32 3.86
258 259 3.190535 GGCGAGATCTGACTAGAATCCTC 59.809 52.174 0.00 0.00 36.32 3.71
259 260 3.153919 GGCGAGATCTGACTAGAATCCT 58.846 50.000 0.00 0.00 36.32 3.24
260 261 2.095466 CGGCGAGATCTGACTAGAATCC 60.095 54.545 0.00 0.00 36.32 3.01
261 262 2.095466 CCGGCGAGATCTGACTAGAATC 60.095 54.545 9.30 0.00 36.32 2.52
262 263 1.883275 CCGGCGAGATCTGACTAGAAT 59.117 52.381 9.30 0.00 36.32 2.40
263 264 1.134189 TCCGGCGAGATCTGACTAGAA 60.134 52.381 9.30 0.00 36.32 2.10
264 265 0.468648 TCCGGCGAGATCTGACTAGA 59.531 55.000 9.30 0.00 37.35 2.43
265 266 1.466950 GATCCGGCGAGATCTGACTAG 59.533 57.143 22.66 0.00 39.70 2.57
266 267 1.524848 GATCCGGCGAGATCTGACTA 58.475 55.000 22.66 0.00 39.70 2.59
267 268 1.175983 GGATCCGGCGAGATCTGACT 61.176 60.000 26.20 3.41 42.02 3.41
268 269 1.287503 GGATCCGGCGAGATCTGAC 59.712 63.158 26.20 13.83 42.02 3.51
269 270 3.765051 GGATCCGGCGAGATCTGA 58.235 61.111 26.20 10.19 42.02 3.27
270 271 2.256764 CGGATCCGGCGAGATCTG 59.743 66.667 26.95 24.76 42.02 2.90
271 272 2.113351 TCGGATCCGGCGAGATCT 59.887 61.111 32.79 0.00 42.02 2.75
272 273 2.255856 GTCGGATCCGGCGAGATC 59.744 66.667 32.79 22.17 41.69 2.75
286 287 4.829518 TGCGCGTCATCCTCGTCG 62.830 66.667 8.43 0.00 0.00 5.12
287 288 2.951745 CTGCGCGTCATCCTCGTC 60.952 66.667 8.43 0.00 0.00 4.20
290 291 3.260483 CTGCTGCGCGTCATCCTC 61.260 66.667 8.43 0.00 0.00 3.71
291 292 4.827087 CCTGCTGCGCGTCATCCT 62.827 66.667 8.43 0.00 0.00 3.24
293 294 3.857854 CACCTGCTGCGCGTCATC 61.858 66.667 8.43 2.53 0.00 2.92
302 303 4.704833 CGTCCCCACCACCTGCTG 62.705 72.222 0.00 0.00 0.00 4.41
304 305 4.265056 AACGTCCCCACCACCTGC 62.265 66.667 0.00 0.00 0.00 4.85
305 306 2.032071 GAACGTCCCCACCACCTG 59.968 66.667 0.00 0.00 0.00 4.00
306 307 3.622826 CGAACGTCCCCACCACCT 61.623 66.667 0.00 0.00 0.00 4.00
307 308 4.692475 CCGAACGTCCCCACCACC 62.692 72.222 0.00 0.00 0.00 4.61
308 309 4.692475 CCCGAACGTCCCCACCAC 62.692 72.222 0.00 0.00 0.00 4.16
309 310 4.938074 TCCCGAACGTCCCCACCA 62.938 66.667 0.00 0.00 0.00 4.17
310 311 4.078516 CTCCCGAACGTCCCCACC 62.079 72.222 0.00 0.00 0.00 4.61
311 312 4.754667 GCTCCCGAACGTCCCCAC 62.755 72.222 0.00 0.00 0.00 4.61
317 318 4.052229 CCTGACGCTCCCGAACGT 62.052 66.667 0.00 0.00 46.91 3.99
318 319 4.796231 CCCTGACGCTCCCGAACG 62.796 72.222 0.00 0.00 38.29 3.95
319 320 4.452733 CCCCTGACGCTCCCGAAC 62.453 72.222 0.00 0.00 38.29 3.95
328 329 3.827898 GAGACGAGCCCCCTGACG 61.828 72.222 0.00 0.00 0.00 4.35
329 330 3.827898 CGAGACGAGCCCCCTGAC 61.828 72.222 0.00 0.00 0.00 3.51
332 333 3.899545 TTTCCGAGACGAGCCCCCT 62.900 63.158 0.00 0.00 0.00 4.79
333 334 3.387947 TTTCCGAGACGAGCCCCC 61.388 66.667 0.00 0.00 0.00 5.40
334 335 2.125633 GTTTCCGAGACGAGCCCC 60.126 66.667 0.00 0.00 0.00 5.80
335 336 0.601841 TTTGTTTCCGAGACGAGCCC 60.602 55.000 0.00 0.00 0.00 5.19
336 337 1.439679 ATTTGTTTCCGAGACGAGCC 58.560 50.000 0.00 0.00 0.00 4.70
337 338 3.508762 TCTATTTGTTTCCGAGACGAGC 58.491 45.455 0.00 0.00 0.00 5.03
338 339 6.365247 TCTTTTCTATTTGTTTCCGAGACGAG 59.635 38.462 0.00 0.00 0.00 4.18
339 340 6.218019 TCTTTTCTATTTGTTTCCGAGACGA 58.782 36.000 0.00 0.00 0.00 4.20
340 341 6.462073 TCTTTTCTATTTGTTTCCGAGACG 57.538 37.500 0.00 0.00 0.00 4.18
341 342 9.511144 TTTTTCTTTTCTATTTGTTTCCGAGAC 57.489 29.630 0.00 0.00 0.00 3.36
342 343 9.730420 CTTTTTCTTTTCTATTTGTTTCCGAGA 57.270 29.630 0.00 0.00 0.00 4.04
343 344 8.968242 CCTTTTTCTTTTCTATTTGTTTCCGAG 58.032 33.333 0.00 0.00 0.00 4.63
344 345 8.688151 TCCTTTTTCTTTTCTATTTGTTTCCGA 58.312 29.630 0.00 0.00 0.00 4.55
345 346 8.865590 TCCTTTTTCTTTTCTATTTGTTTCCG 57.134 30.769 0.00 0.00 0.00 4.30
388 389 5.556355 TCTAGCATGCAAGTCAAATTGAG 57.444 39.130 21.98 0.00 31.55 3.02
405 406 3.126831 AGTTTCATAGCGTGCATCTAGC 58.873 45.455 0.00 0.00 45.96 3.42
429 430 8.510243 AACTGTAGTCATGCATGAATAATGAA 57.490 30.769 31.84 19.07 38.82 2.57
430 431 8.510243 AAACTGTAGTCATGCATGAATAATGA 57.490 30.769 31.84 19.88 38.82 2.57
433 434 9.448438 AGTAAAACTGTAGTCATGCATGAATAA 57.552 29.630 31.84 21.82 38.82 1.40
435 436 7.928307 AGTAAAACTGTAGTCATGCATGAAT 57.072 32.000 30.02 30.02 38.75 2.57
442 443 5.288712 CACCGCTAGTAAAACTGTAGTCATG 59.711 44.000 0.00 0.00 0.00 3.07
444 445 4.279169 ACACCGCTAGTAAAACTGTAGTCA 59.721 41.667 0.00 0.00 0.00 3.41
513 514 7.054751 GCTTATTTTGTAATGGAGGGAGTAGT 58.945 38.462 0.00 0.00 0.00 2.73
514 515 7.054124 TGCTTATTTTGTAATGGAGGGAGTAG 58.946 38.462 0.00 0.00 0.00 2.57
515 516 6.964464 TGCTTATTTTGTAATGGAGGGAGTA 58.036 36.000 0.00 0.00 0.00 2.59
517 518 6.774656 AGATGCTTATTTTGTAATGGAGGGAG 59.225 38.462 0.00 0.00 0.00 4.30
519 520 6.547141 TGAGATGCTTATTTTGTAATGGAGGG 59.453 38.462 0.00 0.00 0.00 4.30
520 521 7.572523 TGAGATGCTTATTTTGTAATGGAGG 57.427 36.000 0.00 0.00 0.00 4.30
521 522 7.646922 GCTTGAGATGCTTATTTTGTAATGGAG 59.353 37.037 0.00 0.00 0.00 3.86
522 523 7.340232 AGCTTGAGATGCTTATTTTGTAATGGA 59.660 33.333 0.00 0.00 37.52 3.41
523 524 7.486647 AGCTTGAGATGCTTATTTTGTAATGG 58.513 34.615 0.00 0.00 37.52 3.16
542 543 5.241506 CCCAAAATAAGTGTCTCAAGCTTGA 59.758 40.000 26.87 26.87 35.57 3.02
543 544 5.241506 TCCCAAAATAAGTGTCTCAAGCTTG 59.758 40.000 20.81 20.81 0.00 4.01
544 545 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
545 546 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
546 547 4.378459 CGTCCCAAAATAAGTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
547 548 4.154195 CCGTCCCAAAATAAGTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
548 549 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
549 550 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
550 551 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
551 552 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
552 553 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
553 554 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
554 555 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
555 556 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
556 557 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
557 558 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
558 559 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
559 560 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
560 561 1.835531 GATACTCCCTCCGTCCCAAAA 59.164 52.381 0.00 0.00 0.00 2.44
561 562 1.273381 TGATACTCCCTCCGTCCCAAA 60.273 52.381 0.00 0.00 0.00 3.28
562 563 0.337082 TGATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
563 564 0.337082 TTGATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
564 565 1.492764 TTTGATACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
565 566 5.485209 AATATTTGATACTCCCTCCGTCC 57.515 43.478 0.00 0.00 0.00 4.79
566 567 8.068892 AGATAATATTTGATACTCCCTCCGTC 57.931 38.462 0.00 0.00 0.00 4.79
567 568 7.896496 AGAGATAATATTTGATACTCCCTCCGT 59.104 37.037 0.00 0.00 0.00 4.69
568 569 8.194104 CAGAGATAATATTTGATACTCCCTCCG 58.806 40.741 0.00 0.00 0.00 4.63
569 570 9.041354 ACAGAGATAATATTTGATACTCCCTCC 57.959 37.037 0.00 0.00 0.00 4.30
570 571 9.868277 CACAGAGATAATATTTGATACTCCCTC 57.132 37.037 0.00 0.00 0.00 4.30
571 572 9.386122 ACACAGAGATAATATTTGATACTCCCT 57.614 33.333 0.00 0.00 0.00 4.20
630 635 4.091509 CCGACAAGTATTTCTGAACGAAGG 59.908 45.833 0.00 0.00 32.21 3.46
633 638 4.508461 TCCGACAAGTATTTCTGAACGA 57.492 40.909 0.00 0.00 0.00 3.85
694 699 5.770663 TGTCGAGGAAATGGTTAAAAATGGA 59.229 36.000 0.00 0.00 0.00 3.41
700 705 7.989416 AATACTTGTCGAGGAAATGGTTAAA 57.011 32.000 0.00 0.00 0.00 1.52
705 710 4.941263 TGGAAATACTTGTCGAGGAAATGG 59.059 41.667 0.00 0.00 0.00 3.16
711 716 4.994852 TCAGTTTGGAAATACTTGTCGAGG 59.005 41.667 0.00 0.00 0.00 4.63
713 718 4.994852 CCTCAGTTTGGAAATACTTGTCGA 59.005 41.667 0.00 0.00 0.00 4.20
727 732 5.359009 ACATGAATAATGCTCCCTCAGTTTG 59.641 40.000 0.00 0.00 40.22 2.93
733 738 9.453572 TCAATATAACATGAATAATGCTCCCTC 57.546 33.333 0.00 0.00 40.22 4.30
811 1382 9.668497 CCTAGTTTAATAGAGGTTGCTAAAGTT 57.332 33.333 0.00 0.00 0.00 2.66
812 1383 9.043548 TCCTAGTTTAATAGAGGTTGCTAAAGT 57.956 33.333 0.00 0.00 0.00 2.66
815 1386 9.209048 TGATCCTAGTTTAATAGAGGTTGCTAA 57.791 33.333 0.00 0.00 0.00 3.09
816 1387 8.777578 TGATCCTAGTTTAATAGAGGTTGCTA 57.222 34.615 0.00 0.00 0.00 3.49
817 1388 7.676683 TGATCCTAGTTTAATAGAGGTTGCT 57.323 36.000 0.00 0.00 0.00 3.91
818 1389 7.934120 ACATGATCCTAGTTTAATAGAGGTTGC 59.066 37.037 0.00 0.00 0.00 4.17
819 1390 9.482627 GACATGATCCTAGTTTAATAGAGGTTG 57.517 37.037 0.00 0.00 0.00 3.77
820 1391 9.440761 AGACATGATCCTAGTTTAATAGAGGTT 57.559 33.333 0.00 0.00 0.00 3.50
821 1392 8.865090 CAGACATGATCCTAGTTTAATAGAGGT 58.135 37.037 0.00 0.00 0.00 3.85
822 1393 8.865090 ACAGACATGATCCTAGTTTAATAGAGG 58.135 37.037 0.00 0.00 0.00 3.69
823 1394 9.689976 CACAGACATGATCCTAGTTTAATAGAG 57.310 37.037 0.00 0.00 0.00 2.43
824 1395 9.421399 TCACAGACATGATCCTAGTTTAATAGA 57.579 33.333 0.00 0.00 0.00 1.98
827 1398 9.911788 AAATCACAGACATGATCCTAGTTTAAT 57.088 29.630 0.00 0.00 38.40 1.40
828 1399 9.166173 CAAATCACAGACATGATCCTAGTTTAA 57.834 33.333 0.00 0.00 38.40 1.52
829 1400 8.321353 ACAAATCACAGACATGATCCTAGTTTA 58.679 33.333 0.00 0.00 38.40 2.01
830 1401 7.170965 ACAAATCACAGACATGATCCTAGTTT 58.829 34.615 0.00 0.00 38.40 2.66
831 1402 6.715280 ACAAATCACAGACATGATCCTAGTT 58.285 36.000 0.00 0.00 38.40 2.24
832 1403 6.155910 AGACAAATCACAGACATGATCCTAGT 59.844 38.462 0.00 0.00 38.40 2.57
833 1404 6.580788 AGACAAATCACAGACATGATCCTAG 58.419 40.000 0.00 0.00 38.40 3.02
834 1405 6.550938 AGACAAATCACAGACATGATCCTA 57.449 37.500 0.00 0.00 38.40 2.94
835 1406 5.432680 AGACAAATCACAGACATGATCCT 57.567 39.130 0.00 0.00 38.40 3.24
836 1407 6.344500 ACTAGACAAATCACAGACATGATCC 58.656 40.000 0.00 0.00 38.40 3.36
837 1408 7.840342 AACTAGACAAATCACAGACATGATC 57.160 36.000 0.00 0.00 38.40 2.92
838 1409 7.879677 TGAAACTAGACAAATCACAGACATGAT 59.120 33.333 0.00 0.00 41.20 2.45
839 1410 7.171508 GTGAAACTAGACAAATCACAGACATGA 59.828 37.037 0.00 0.00 40.02 3.07
840 1411 7.293745 GTGAAACTAGACAAATCACAGACATG 58.706 38.462 0.00 0.00 40.02 3.21
841 1412 7.426929 GTGAAACTAGACAAATCACAGACAT 57.573 36.000 0.00 0.00 40.02 3.06
842 1413 6.844696 GTGAAACTAGACAAATCACAGACA 57.155 37.500 0.00 0.00 40.02 3.41
859 1430 1.264288 CTGCGGAAGAACCAGTGAAAC 59.736 52.381 0.00 0.00 38.90 2.78
860 1431 1.593196 CTGCGGAAGAACCAGTGAAA 58.407 50.000 0.00 0.00 38.90 2.69
861 1432 0.250295 CCTGCGGAAGAACCAGTGAA 60.250 55.000 0.00 0.00 38.90 3.18
862 1433 1.371183 CCTGCGGAAGAACCAGTGA 59.629 57.895 0.00 0.00 38.90 3.41
863 1434 1.071471 ACCTGCGGAAGAACCAGTG 59.929 57.895 0.00 0.00 38.90 3.66
864 1435 1.071471 CACCTGCGGAAGAACCAGT 59.929 57.895 0.00 0.00 38.90 4.00
865 1436 2.328099 GCACCTGCGGAAGAACCAG 61.328 63.158 0.00 0.00 38.90 4.00
866 1437 2.281484 GCACCTGCGGAAGAACCA 60.281 61.111 0.00 0.00 38.90 3.67
867 1438 3.056328 GGCACCTGCGGAAGAACC 61.056 66.667 0.00 0.00 43.26 3.62
868 1439 2.032681 AGGCACCTGCGGAAGAAC 59.967 61.111 0.00 0.00 43.26 3.01
869 1440 2.032528 CAGGCACCTGCGGAAGAA 59.967 61.111 3.23 0.00 43.26 2.52
883 1454 2.162338 TACTTTGGACGGCGGACAGG 62.162 60.000 13.24 8.87 0.00 4.00
884 1455 0.736325 CTACTTTGGACGGCGGACAG 60.736 60.000 13.24 1.90 0.00 3.51
885 1456 1.290955 CTACTTTGGACGGCGGACA 59.709 57.895 13.24 6.79 0.00 4.02
886 1457 0.320160 AACTACTTTGGACGGCGGAC 60.320 55.000 13.24 3.63 0.00 4.79
887 1458 0.037975 GAACTACTTTGGACGGCGGA 60.038 55.000 13.24 0.00 0.00 5.54
888 1459 1.017701 GGAACTACTTTGGACGGCGG 61.018 60.000 13.24 0.00 0.00 6.13
889 1460 1.017701 GGGAACTACTTTGGACGGCG 61.018 60.000 4.80 4.80 0.00 6.46
890 1461 0.675837 GGGGAACTACTTTGGACGGC 60.676 60.000 0.00 0.00 0.00 5.68
891 1462 0.390735 CGGGGAACTACTTTGGACGG 60.391 60.000 0.00 0.00 0.00 4.79
892 1463 0.319405 ACGGGGAACTACTTTGGACG 59.681 55.000 0.00 0.00 0.00 4.79
893 1464 2.556144 AACGGGGAACTACTTTGGAC 57.444 50.000 0.00 0.00 0.00 4.02
916 1487 0.535102 GGGAACTGATATGCCCCGTG 60.535 60.000 0.00 0.00 34.39 4.94
927 1498 0.413037 TTAGGGGTACGGGGAACTGA 59.587 55.000 0.00 0.00 41.09 3.41
929 1500 2.043307 TTTTAGGGGTACGGGGAACT 57.957 50.000 0.00 0.00 0.00 3.01
988 1559 3.496131 GAGCATTTTCGGCGGCGA 61.496 61.111 31.46 31.46 36.08 5.54
1233 1804 3.409384 AGGAAGGCCTTCTGGAGC 58.591 61.111 37.72 24.03 43.90 4.70
1370 1950 3.532155 GCATCTCGGCGAGGAGGT 61.532 66.667 33.93 16.47 34.74 3.85
1697 2277 1.263217 ACAGGTAAGCAAGAAAACGCG 59.737 47.619 3.53 3.53 0.00 6.01
1724 2309 1.082104 GAACAGAAAGCCGCGTTGG 60.082 57.895 4.92 0.00 42.50 3.77
1726 2311 0.949105 ATCGAACAGAAAGCCGCGTT 60.949 50.000 4.92 0.00 0.00 4.84
1730 2315 1.438651 TTCCATCGAACAGAAAGCCG 58.561 50.000 0.00 0.00 0.00 5.52
1736 2321 3.333029 TCAAGCATTCCATCGAACAGA 57.667 42.857 0.00 0.00 0.00 3.41
1762 2347 1.630369 AGTGCAAATGTCTAGGAGCCA 59.370 47.619 0.00 0.00 0.00 4.75
1768 2353 1.098050 GGGGCAGTGCAAATGTCTAG 58.902 55.000 18.61 0.00 36.37 2.43
1770 2355 0.251922 ATGGGGCAGTGCAAATGTCT 60.252 50.000 18.61 0.00 36.37 3.41
1771 2356 0.108520 CATGGGGCAGTGCAAATGTC 60.109 55.000 18.61 0.00 34.63 3.06
1773 2358 0.828022 ATCATGGGGCAGTGCAAATG 59.172 50.000 18.61 16.10 33.24 2.32
1774 2359 1.575419 AATCATGGGGCAGTGCAAAT 58.425 45.000 18.61 3.95 0.00 2.32
1775 2360 1.350071 AAATCATGGGGCAGTGCAAA 58.650 45.000 18.61 1.32 0.00 3.68
1776 2361 1.350071 AAAATCATGGGGCAGTGCAA 58.650 45.000 18.61 1.73 0.00 4.08
1778 2363 1.275856 TGAAAAATCATGGGGCAGTGC 59.724 47.619 6.55 6.55 0.00 4.40
1779 2364 3.527533 CATGAAAAATCATGGGGCAGTG 58.472 45.455 10.27 0.00 42.63 3.66
1780 2365 3.899052 CATGAAAAATCATGGGGCAGT 57.101 42.857 10.27 0.00 42.63 4.40
1819 2404 3.060479 TGTCTAGGGGCCAACTATCAT 57.940 47.619 4.39 0.00 0.00 2.45
1829 2414 3.350219 TGAACAAAGATGTCTAGGGGC 57.650 47.619 0.00 0.00 39.40 5.80
1830 2415 4.848357 ACATGAACAAAGATGTCTAGGGG 58.152 43.478 0.00 0.00 39.40 4.79
1832 2417 7.621428 ATGAACATGAACAAAGATGTCTAGG 57.379 36.000 0.00 0.00 39.40 3.02
1834 2419 7.809331 GCAAATGAACATGAACAAAGATGTCTA 59.191 33.333 0.00 0.00 39.40 2.59
1835 2420 6.643770 GCAAATGAACATGAACAAAGATGTCT 59.356 34.615 0.00 0.00 39.40 3.41
1836 2421 6.421501 TGCAAATGAACATGAACAAAGATGTC 59.578 34.615 0.00 0.00 39.40 3.06
1837 2422 6.201425 GTGCAAATGAACATGAACAAAGATGT 59.799 34.615 0.00 0.00 43.14 3.06
1838 2423 6.422701 AGTGCAAATGAACATGAACAAAGATG 59.577 34.615 0.00 0.00 0.00 2.90
1839 2424 6.422701 CAGTGCAAATGAACATGAACAAAGAT 59.577 34.615 0.00 0.00 30.28 2.40
1840 2425 5.749588 CAGTGCAAATGAACATGAACAAAGA 59.250 36.000 0.00 0.00 30.28 2.52
1841 2426 5.557514 GCAGTGCAAATGAACATGAACAAAG 60.558 40.000 11.09 0.00 30.28 2.77
1845 2430 3.382855 TGCAGTGCAAATGAACATGAAC 58.617 40.909 17.26 0.00 34.76 3.18
1893 2516 7.795047 TGACAACCAGAATCATGTCAGTATAT 58.205 34.615 3.52 0.00 45.14 0.86
2220 2843 7.932120 ATAATCGTACTTCTGTCAGTAATGC 57.068 36.000 0.00 0.00 30.86 3.56
2575 3198 1.564622 CGCGTATGAAGAATGCCCG 59.435 57.895 0.00 0.00 0.00 6.13
2596 3219 4.022849 GCAGGTGATAACCCAAAGATATGC 60.023 45.833 0.00 0.00 0.00 3.14
2620 3243 5.104900 AGTGTAGGTAATCACATTCTGGTCC 60.105 44.000 0.00 0.00 37.07 4.46
2952 3583 2.770164 ACATGAAGCTGGGTGAGTAC 57.230 50.000 0.00 0.00 0.00 2.73
2956 3587 2.622942 GTGAAAACATGAAGCTGGGTGA 59.377 45.455 0.00 0.00 0.00 4.02
3039 3672 5.807011 GCCATGGAAAAGTAATCACATGTTC 59.193 40.000 18.40 0.00 35.24 3.18
3151 3784 4.952335 CCTAGGTTCCAAATTCAGCAATCT 59.048 41.667 0.00 0.00 0.00 2.40
3174 3807 7.948278 AACATAAAGAGTCGGCTTATACATC 57.052 36.000 0.00 0.00 0.00 3.06
3185 3818 6.030849 CAGTCCTCACTAACATAAAGAGTCG 58.969 44.000 0.00 0.00 0.00 4.18
3204 3837 2.501723 TCTCCCTTTACATCAGCAGTCC 59.498 50.000 0.00 0.00 0.00 3.85
3274 3907 0.103208 GCTCCGTGACCTCCATAGTG 59.897 60.000 0.00 0.00 0.00 2.74
3290 3923 0.322975 TTCCAGACTTCCAGCTGCTC 59.677 55.000 8.66 0.00 0.00 4.26
3414 4101 0.322546 GGCCTCCCTACCAACAACTG 60.323 60.000 0.00 0.00 0.00 3.16
3415 4102 0.475828 AGGCCTCCCTACCAACAACT 60.476 55.000 0.00 0.00 40.58 3.16
3416 4103 0.404426 AAGGCCTCCCTACCAACAAC 59.596 55.000 5.23 0.00 41.90 3.32
3417 4104 1.074889 GAAAGGCCTCCCTACCAACAA 59.925 52.381 5.23 0.00 41.90 2.83
3418 4105 0.696501 GAAAGGCCTCCCTACCAACA 59.303 55.000 5.23 0.00 41.90 3.33
3421 4108 4.164264 GGAAAGGCCTCCCTACCA 57.836 61.111 5.23 0.00 41.90 3.25
3574 4297 7.198306 AGGAAATGTTAAAAGTTACAGGACG 57.802 36.000 0.00 0.00 0.00 4.79
3588 4311 6.109359 CACCAACCACAAAAAGGAAATGTTA 58.891 36.000 0.00 0.00 0.00 2.41
3590 4313 4.512484 CACCAACCACAAAAAGGAAATGT 58.488 39.130 0.00 0.00 0.00 2.71
3642 4365 3.165071 ACCAGCCCCTGTTTGATTTAAG 58.835 45.455 0.00 0.00 0.00 1.85
3665 4389 3.548745 TGAATGGTAGCAGGTGATCAG 57.451 47.619 0.00 0.00 0.00 2.90
3783 4508 5.208463 TCTTTCACCCCACTTAAAATTGC 57.792 39.130 0.00 0.00 0.00 3.56
3848 4573 3.362693 CGTCTGTTTCAGCGGTTTTCTAC 60.363 47.826 0.00 0.00 31.35 2.59
3864 4589 0.251386 TCAAGGGAGAGCTCGTCTGT 60.251 55.000 8.37 0.00 34.71 3.41
3868 4593 2.344203 CGGTCAAGGGAGAGCTCGT 61.344 63.158 8.37 0.00 34.00 4.18
3872 4597 2.579738 GGTCGGTCAAGGGAGAGC 59.420 66.667 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.