Multiple sequence alignment - TraesCS7D01G427500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G427500 chr7D 100.000 4244 0 0 1 4244 548602277 548606520 0.000000e+00 7838.0
1 TraesCS7D01G427500 chr7D 92.080 947 74 1 1 946 57706842 57705896 0.000000e+00 1332.0
2 TraesCS7D01G427500 chr7D 83.333 144 23 1 3654 3797 575593984 575594126 9.570000e-27 132.0
3 TraesCS7D01G427500 chr7A 86.426 1746 108 51 1875 3545 632378671 632380362 0.000000e+00 1792.0
4 TraesCS7D01G427500 chr7A 88.656 811 61 13 944 1739 632377641 632378435 0.000000e+00 959.0
5 TraesCS7D01G427500 chr7A 82.339 436 48 24 1875 2295 86052473 86052052 6.750000e-93 351.0
6 TraesCS7D01G427500 chr7A 84.431 334 39 10 1878 2206 86074072 86073747 2.460000e-82 316.0
7 TraesCS7D01G427500 chr7A 79.299 314 27 16 3798 4091 632380492 632380787 7.250000e-43 185.0
8 TraesCS7D01G427500 chr7A 87.838 74 8 1 3673 3746 621751241 621751169 7.560000e-13 86.1
9 TraesCS7D01G427500 chr4B 94.597 944 51 0 1 944 613736316 613737259 0.000000e+00 1461.0
10 TraesCS7D01G427500 chr5D 93.213 943 59 5 1 941 548403495 548402556 0.000000e+00 1382.0
11 TraesCS7D01G427500 chr7B 88.087 1192 73 26 2456 3616 591704219 591705372 0.000000e+00 1351.0
12 TraesCS7D01G427500 chr7B 89.821 894 54 15 944 1822 591702769 591703640 0.000000e+00 1112.0
13 TraesCS7D01G427500 chr7B 94.154 325 12 5 1875 2197 591703707 591704026 4.930000e-134 488.0
14 TraesCS7D01G427500 chr7B 83.483 333 41 12 1961 2286 34614386 34614061 8.920000e-77 298.0
15 TraesCS7D01G427500 chr7B 82.875 327 34 11 1878 2200 34618824 34618516 1.500000e-69 274.0
16 TraesCS7D01G427500 chr7B 77.564 468 65 25 3798 4244 591705420 591705868 3.280000e-61 246.0
17 TraesCS7D01G427500 chr7B 83.673 147 19 5 3654 3797 668205430 668205286 2.660000e-27 134.0
18 TraesCS7D01G427500 chr7B 97.778 45 0 1 1831 1874 591703722 591703678 4.550000e-10 76.8
19 TraesCS7D01G427500 chr2B 92.055 944 74 1 1 943 14813308 14814251 0.000000e+00 1327.0
20 TraesCS7D01G427500 chr2B 91.534 945 78 2 1 943 82068250 82067306 0.000000e+00 1301.0
21 TraesCS7D01G427500 chr2B 85.714 91 11 1 3654 3744 186946481 186946569 1.260000e-15 95.3
22 TraesCS7D01G427500 chr3A 91.852 945 74 3 1 943 589370114 589371057 0.000000e+00 1315.0
23 TraesCS7D01G427500 chr3A 91.483 951 70 8 1 944 583979780 583978834 0.000000e+00 1297.0
24 TraesCS7D01G427500 chr3A 84.416 77 12 0 3721 3797 589562797 589562721 4.550000e-10 76.8
25 TraesCS7D01G427500 chr1A 91.552 947 77 3 1 945 584829516 584830461 0.000000e+00 1303.0
26 TraesCS7D01G427500 chr1A 79.710 138 26 2 3654 3791 521944789 521944654 9.710000e-17 99.0
27 TraesCS7D01G427500 chr4A 91.419 944 79 2 1 943 614965019 614964077 0.000000e+00 1293.0
28 TraesCS7D01G427500 chr6A 82.222 360 44 12 1878 2225 105591588 105591237 4.150000e-75 292.0
29 TraesCS7D01G427500 chr6A 81.737 334 42 16 1875 2197 106073029 106073354 1.170000e-65 261.0
30 TraesCS7D01G427500 chr6D 82.428 313 36 13 1899 2197 87463661 87463354 5.450000e-64 255.0
31 TraesCS7D01G427500 chr6D 82.313 147 25 1 3651 3797 111016642 111016787 4.450000e-25 126.0
32 TraesCS7D01G427500 chr6B 80.000 145 23 6 3654 3796 4191964 4192104 7.510000e-18 102.0
33 TraesCS7D01G427500 chr6B 82.692 104 15 2 3654 3757 718313665 718313565 5.840000e-14 89.8
34 TraesCS7D01G427500 chr4D 85.263 95 13 1 3652 3746 508817620 508817713 3.490000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G427500 chr7D 548602277 548606520 4243 False 7838.000000 7838 100.000000 1 4244 1 chr7D.!!$F1 4243
1 TraesCS7D01G427500 chr7D 57705896 57706842 946 True 1332.000000 1332 92.080000 1 946 1 chr7D.!!$R1 945
2 TraesCS7D01G427500 chr7A 632377641 632380787 3146 False 978.666667 1792 84.793667 944 4091 3 chr7A.!!$F1 3147
3 TraesCS7D01G427500 chr4B 613736316 613737259 943 False 1461.000000 1461 94.597000 1 944 1 chr4B.!!$F1 943
4 TraesCS7D01G427500 chr5D 548402556 548403495 939 True 1382.000000 1382 93.213000 1 941 1 chr5D.!!$R1 940
5 TraesCS7D01G427500 chr7B 591702769 591705868 3099 False 799.250000 1351 87.406500 944 4244 4 chr7B.!!$F1 3300
6 TraesCS7D01G427500 chr2B 14813308 14814251 943 False 1327.000000 1327 92.055000 1 943 1 chr2B.!!$F1 942
7 TraesCS7D01G427500 chr2B 82067306 82068250 944 True 1301.000000 1301 91.534000 1 943 1 chr2B.!!$R1 942
8 TraesCS7D01G427500 chr3A 589370114 589371057 943 False 1315.000000 1315 91.852000 1 943 1 chr3A.!!$F1 942
9 TraesCS7D01G427500 chr3A 583978834 583979780 946 True 1297.000000 1297 91.483000 1 944 1 chr3A.!!$R1 943
10 TraesCS7D01G427500 chr1A 584829516 584830461 945 False 1303.000000 1303 91.552000 1 945 1 chr1A.!!$F1 944
11 TraesCS7D01G427500 chr4A 614964077 614965019 942 True 1293.000000 1293 91.419000 1 943 1 chr4A.!!$R1 942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 929 0.178068 ACATGCGGCTTTCTACGGAT 59.822 50.0 0.0 0.0 41.85 4.18 F
1852 1914 0.179056 CCACGGCCCAGTATTACAGG 60.179 60.0 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2619 2803 0.037419 CGGCTTTTTGGAACATGGGG 60.037 55.0 0.00 0.00 39.30 4.96 R
3628 3902 0.514691 GAGCAGCGCTGGCATAATAC 59.485 55.0 36.47 18.31 39.88 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.998099 AAACTCTCAGCTTTTGAAGGC 57.002 42.857 0.00 0.00 34.81 4.35
175 176 3.774766 TCTTCATGCACCCACTACTGTAT 59.225 43.478 0.00 0.00 0.00 2.29
192 193 8.198109 ACTACTGTATATTGGACAGCTGTTAAG 58.802 37.037 22.65 8.85 46.85 1.85
312 313 1.483827 GGATGCAGTGATGACAGGAGA 59.516 52.381 0.00 0.00 0.00 3.71
619 621 5.431765 AGAGAGTTGCAGAAAAGAAGTTGA 58.568 37.500 0.00 0.00 0.00 3.18
760 762 8.751242 GGGAGGGTGTTAGAATTAGAGATATAC 58.249 40.741 0.00 0.00 0.00 1.47
832 840 0.613853 TCCTCCTGTACCGAACCTGG 60.614 60.000 0.00 0.00 0.00 4.45
910 920 5.560760 CGATCAATATAAACACATGCGGCTT 60.561 40.000 0.00 0.00 0.00 4.35
919 929 0.178068 ACATGCGGCTTTCTACGGAT 59.822 50.000 0.00 0.00 41.85 4.18
1128 1139 1.638589 AGATCCCCTCCTCCTATCTCG 59.361 57.143 0.00 0.00 0.00 4.04
1150 1161 1.448540 CAGCGCCGTCTTCTTCCAT 60.449 57.895 2.29 0.00 0.00 3.41
1166 1177 2.712709 TCCATCCCGTCGATATCTCTC 58.287 52.381 0.34 0.00 0.00 3.20
1250 1263 1.303398 AGACCGAGACCGAGAAGCA 60.303 57.895 0.00 0.00 38.22 3.91
1264 1277 0.530288 GAAGCAGCTCTTCTCTCCGT 59.470 55.000 14.82 0.00 45.99 4.69
1266 1279 1.226547 GCAGCTCTTCTCTCCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
1331 1344 2.520458 TGGCAAGGTTGTCAGGGG 59.480 61.111 0.00 0.00 37.97 4.79
1374 1387 2.064014 CGTCTTTAGGTTCCGTTGGTC 58.936 52.381 0.00 0.00 0.00 4.02
1404 1417 2.290514 TGGACTGGCTTTCTTGATCTGG 60.291 50.000 0.00 0.00 0.00 3.86
1424 1437 2.481104 GGCTGTTTCTCTGATCCTCTCG 60.481 54.545 0.00 0.00 0.00 4.04
1426 1439 2.165234 CTGTTTCTCTGATCCTCTCGCA 59.835 50.000 0.00 0.00 0.00 5.10
1440 1453 3.559242 CCTCTCGCATTTTCCTCTGATTC 59.441 47.826 0.00 0.00 0.00 2.52
1471 1484 2.365941 TCAGGTGTACGATGTGACCAAA 59.634 45.455 0.00 0.00 0.00 3.28
1475 1488 3.126343 GGTGTACGATGTGACCAAATTCC 59.874 47.826 0.00 0.00 0.00 3.01
1477 1490 4.092968 GTGTACGATGTGACCAAATTCCTC 59.907 45.833 0.00 0.00 0.00 3.71
1529 1542 3.129287 CCTCCATGCATCTGGTACAAAAC 59.871 47.826 6.24 0.00 38.70 2.43
1558 1571 6.262944 TCAATTGTCTGCTTCTTCTGCTTTAA 59.737 34.615 5.13 0.00 0.00 1.52
1564 1577 6.148480 GTCTGCTTCTTCTGCTTTAATTCTGA 59.852 38.462 0.00 0.00 0.00 3.27
1576 1600 6.982141 TGCTTTAATTCTGAATCATCCATTGC 59.018 34.615 2.92 2.30 0.00 3.56
1601 1626 4.631377 TGCTCATTGTCATGTTACTACTGC 59.369 41.667 0.00 0.00 0.00 4.40
1611 1636 7.282224 TGTCATGTTACTACTGCTTTCTTGTTT 59.718 33.333 0.00 0.00 0.00 2.83
1741 1767 5.824624 AGACCAACATATCGAAAATGCTCAT 59.175 36.000 10.20 0.00 0.00 2.90
1743 1769 6.498304 ACCAACATATCGAAAATGCTCATTC 58.502 36.000 10.20 0.00 0.00 2.67
1744 1770 6.319658 ACCAACATATCGAAAATGCTCATTCT 59.680 34.615 10.20 0.00 0.00 2.40
1759 1812 3.106827 TCATTCTGACATGGTGCTAGGA 58.893 45.455 0.00 0.00 0.00 2.94
1784 1837 1.304962 GGAATCCCAACCACACCCC 60.305 63.158 0.00 0.00 0.00 4.95
1785 1838 1.677633 GAATCCCAACCACACCCCG 60.678 63.158 0.00 0.00 0.00 5.73
1789 1842 2.353189 CCAACCACACCCCGCATA 59.647 61.111 0.00 0.00 0.00 3.14
1831 1893 5.205056 TGTTTTTGAGAAATACCACACCCT 58.795 37.500 0.00 0.00 0.00 4.34
1832 1894 5.659079 TGTTTTTGAGAAATACCACACCCTT 59.341 36.000 0.00 0.00 0.00 3.95
1834 1896 3.713826 TGAGAAATACCACACCCTTCC 57.286 47.619 0.00 0.00 0.00 3.46
1837 1899 2.081462 GAAATACCACACCCTTCCACG 58.919 52.381 0.00 0.00 0.00 4.94
1838 1900 0.326927 AATACCACACCCTTCCACGG 59.673 55.000 0.00 0.00 0.00 4.94
1839 1901 2.193087 ATACCACACCCTTCCACGGC 62.193 60.000 0.00 0.00 0.00 5.68
1843 1905 4.722700 CACCCTTCCACGGCCCAG 62.723 72.222 0.00 0.00 0.00 4.45
1845 1907 3.006728 CCCTTCCACGGCCCAGTA 61.007 66.667 0.00 0.00 0.00 2.74
1846 1908 2.375345 CCCTTCCACGGCCCAGTAT 61.375 63.158 0.00 0.00 0.00 2.12
1847 1909 1.607612 CCTTCCACGGCCCAGTATT 59.392 57.895 0.00 0.00 0.00 1.89
1849 1911 1.474498 CCTTCCACGGCCCAGTATTAC 60.474 57.143 0.00 0.00 0.00 1.89
1850 1912 1.208535 CTTCCACGGCCCAGTATTACA 59.791 52.381 0.00 0.00 0.00 2.41
1851 1913 0.828022 TCCACGGCCCAGTATTACAG 59.172 55.000 0.00 0.00 0.00 2.74
1852 1914 0.179056 CCACGGCCCAGTATTACAGG 60.179 60.000 0.00 0.00 0.00 4.00
1853 1915 0.179056 CACGGCCCAGTATTACAGGG 60.179 60.000 17.74 17.74 46.71 4.45
1858 1920 3.687264 CGGCCCAGTATTACAGGGAAAAT 60.687 47.826 24.39 0.00 46.93 1.82
1860 1922 3.889538 GCCCAGTATTACAGGGAAAATCC 59.110 47.826 24.39 5.30 46.93 3.01
1861 1923 4.630184 GCCCAGTATTACAGGGAAAATCCA 60.630 45.833 24.39 0.00 46.93 3.41
1864 1926 6.040842 CCCAGTATTACAGGGAAAATCCATTG 59.959 42.308 17.26 0.00 46.93 2.82
1865 1927 6.040842 CCAGTATTACAGGGAAAATCCATTGG 59.959 42.308 0.00 0.00 38.64 3.16
1866 1928 6.040842 CAGTATTACAGGGAAAATCCATTGGG 59.959 42.308 2.09 0.00 38.64 4.12
1867 1929 2.252535 ACAGGGAAAATCCATTGGGG 57.747 50.000 2.09 0.00 38.64 4.96
1868 1930 1.273781 ACAGGGAAAATCCATTGGGGG 60.274 52.381 2.09 0.00 38.64 5.40
1869 1931 0.326522 AGGGAAAATCCATTGGGGGC 60.327 55.000 2.09 0.00 38.64 5.80
1870 1932 0.620121 GGGAAAATCCATTGGGGGCA 60.620 55.000 2.09 0.00 38.64 5.36
1871 1933 0.832626 GGAAAATCCATTGGGGGCAG 59.167 55.000 2.09 0.00 36.28 4.85
1872 1934 0.832626 GAAAATCCATTGGGGGCAGG 59.167 55.000 2.09 0.00 37.22 4.85
1873 1935 1.273986 AAAATCCATTGGGGGCAGGC 61.274 55.000 2.09 0.00 37.22 4.85
1897 2024 1.748879 GGCCGTGGAAGCATTGCTA 60.749 57.895 12.39 0.00 38.25 3.49
2033 2160 1.610673 GTGGAGAGCAGGGAGGTGA 60.611 63.158 0.00 0.00 0.00 4.02
2038 2165 0.616111 AGAGCAGGGAGGTGAACGAT 60.616 55.000 0.00 0.00 0.00 3.73
2069 2196 3.712907 GAGGGGCAGGGCAACGTA 61.713 66.667 0.00 0.00 37.60 3.57
2129 2257 8.687242 TCAAGTGTAGTATCTGTTCTTATCAGG 58.313 37.037 0.00 0.00 34.15 3.86
2197 2325 1.151908 TTTTTGTGGGGAGGGTCCG 59.848 57.895 0.00 0.00 37.43 4.79
2219 2359 1.465387 ACTGGGGCCCTTAGGTGTT 60.465 57.895 25.93 1.66 34.57 3.32
2232 2372 2.561373 GTGTTGCCTAGGCGTTGC 59.439 61.111 28.28 17.54 45.51 4.17
2233 2373 2.112087 TGTTGCCTAGGCGTTGCA 59.888 55.556 28.28 19.77 45.51 4.08
2234 2374 2.258013 TGTTGCCTAGGCGTTGCAC 61.258 57.895 28.28 18.46 45.51 4.57
2235 2375 1.966451 GTTGCCTAGGCGTTGCACT 60.966 57.895 28.28 0.00 45.51 4.40
2236 2376 0.672401 GTTGCCTAGGCGTTGCACTA 60.672 55.000 28.28 5.61 45.51 2.74
2237 2377 0.672401 TTGCCTAGGCGTTGCACTAC 60.672 55.000 28.28 0.00 45.51 2.73
2238 2378 1.079405 GCCTAGGCGTTGCACTACA 60.079 57.895 20.16 0.00 0.00 2.74
2239 2379 1.084370 GCCTAGGCGTTGCACTACAG 61.084 60.000 20.16 0.00 0.00 2.74
2240 2380 1.084370 CCTAGGCGTTGCACTACAGC 61.084 60.000 0.00 0.00 0.00 4.40
2242 2382 2.358737 GGCGTTGCACTACAGCCT 60.359 61.111 13.61 0.00 44.06 4.58
2243 2383 2.680913 GGCGTTGCACTACAGCCTG 61.681 63.158 13.61 0.00 44.06 4.85
2244 2384 2.863153 CGTTGCACTACAGCCTGC 59.137 61.111 0.00 0.00 0.00 4.85
2256 2396 3.721706 GCCTGCCACTACAGCCCT 61.722 66.667 0.00 0.00 36.29 5.19
2272 2412 4.845580 CTGGCAGGCGCACCCTAG 62.846 72.222 10.83 0.00 44.09 3.02
2297 2444 9.546428 AGTCAAAACTAATTTCAAATTTCCCTG 57.454 29.630 0.00 0.00 32.59 4.45
2350 2499 3.129462 TCAAATTCGCCTGTTTGACACAA 59.871 39.130 0.00 0.00 38.88 3.33
2394 2543 1.608590 CGGGCAGTCATTGTGTTTCTT 59.391 47.619 0.00 0.00 0.00 2.52
2395 2544 2.034558 CGGGCAGTCATTGTGTTTCTTT 59.965 45.455 0.00 0.00 0.00 2.52
2406 2555 9.221775 GTCATTGTGTTTCTTTACTTGTTGTAG 57.778 33.333 0.00 0.00 32.08 2.74
2412 2561 8.076178 GTGTTTCTTTACTTGTTGTAGATGCAT 58.924 33.333 0.00 0.00 32.08 3.96
2420 2569 6.237901 ACTTGTTGTAGATGCATCAAAGGTA 58.762 36.000 27.81 8.88 30.61 3.08
2431 2580 9.860898 AGATGCATCAAAGGTAAAATTAAGAAC 57.139 29.630 27.81 0.00 0.00 3.01
2434 2583 6.806739 GCATCAAAGGTAAAATTAAGAACGCT 59.193 34.615 0.00 0.00 0.00 5.07
2436 2585 7.499321 TCAAAGGTAAAATTAAGAACGCTGA 57.501 32.000 0.00 0.00 0.00 4.26
2457 2606 1.864565 ATGTTTTTCAAAGTGCGCCC 58.135 45.000 4.18 0.00 0.00 6.13
2459 2608 1.066858 TGTTTTTCAAAGTGCGCCCAA 60.067 42.857 4.18 0.00 0.00 4.12
2460 2609 2.209273 GTTTTTCAAAGTGCGCCCAAT 58.791 42.857 4.18 0.00 0.00 3.16
2465 2641 0.249405 CAAAGTGCGCCCAATGTTGT 60.249 50.000 4.18 0.00 0.00 3.32
2515 2697 6.951778 TGCCTACAGCCTACACTATTATATCA 59.048 38.462 0.00 0.00 42.71 2.15
2569 2751 7.489113 GCCAACATCATGAATAAAGTTTAGTGG 59.511 37.037 0.00 0.53 0.00 4.00
2583 2767 4.221703 AGTTTAGTGGATCACAGGACAGAG 59.778 45.833 0.00 0.00 36.74 3.35
2653 2837 2.674084 GCCGCGTCCACCAACTTAC 61.674 63.158 4.92 0.00 0.00 2.34
2665 2849 4.398044 CCACCAACTTACGGAAATTAGCAT 59.602 41.667 0.00 0.00 0.00 3.79
2700 2884 2.808244 CAAATGTTTGCGTTCCACTGT 58.192 42.857 0.00 0.00 0.00 3.55
2701 2885 3.958704 CAAATGTTTGCGTTCCACTGTA 58.041 40.909 0.00 0.00 0.00 2.74
2702 2886 4.355437 CAAATGTTTGCGTTCCACTGTAA 58.645 39.130 0.00 0.00 0.00 2.41
2703 2887 4.640789 AATGTTTGCGTTCCACTGTAAA 57.359 36.364 0.00 0.00 0.00 2.01
2704 2888 4.640789 ATGTTTGCGTTCCACTGTAAAA 57.359 36.364 0.00 0.00 0.00 1.52
2705 2889 4.640789 TGTTTGCGTTCCACTGTAAAAT 57.359 36.364 0.00 0.00 0.00 1.82
2706 2890 4.602995 TGTTTGCGTTCCACTGTAAAATC 58.397 39.130 0.00 0.00 0.00 2.17
2707 2891 3.529634 TTGCGTTCCACTGTAAAATCG 57.470 42.857 0.00 0.00 0.00 3.34
2708 2892 2.485903 TGCGTTCCACTGTAAAATCGT 58.514 42.857 0.00 0.00 0.00 3.73
2709 2893 2.477375 TGCGTTCCACTGTAAAATCGTC 59.523 45.455 0.00 0.00 0.00 4.20
2710 2894 2.477375 GCGTTCCACTGTAAAATCGTCA 59.523 45.455 0.00 0.00 0.00 4.35
2711 2895 3.059461 GCGTTCCACTGTAAAATCGTCAA 60.059 43.478 0.00 0.00 0.00 3.18
2712 2896 4.698276 CGTTCCACTGTAAAATCGTCAAG 58.302 43.478 0.00 0.00 0.00 3.02
2713 2897 4.464112 GTTCCACTGTAAAATCGTCAAGC 58.536 43.478 0.00 0.00 0.00 4.01
2714 2898 3.071479 TCCACTGTAAAATCGTCAAGCC 58.929 45.455 0.00 0.00 0.00 4.35
2715 2899 3.074412 CCACTGTAAAATCGTCAAGCCT 58.926 45.455 0.00 0.00 0.00 4.58
2716 2900 4.020928 TCCACTGTAAAATCGTCAAGCCTA 60.021 41.667 0.00 0.00 0.00 3.93
2717 2901 4.876107 CCACTGTAAAATCGTCAAGCCTAT 59.124 41.667 0.00 0.00 0.00 2.57
2718 2902 5.006746 CCACTGTAAAATCGTCAAGCCTATC 59.993 44.000 0.00 0.00 0.00 2.08
2719 2903 4.804139 ACTGTAAAATCGTCAAGCCTATCG 59.196 41.667 0.00 0.00 0.00 2.92
2720 2904 3.554324 TGTAAAATCGTCAAGCCTATCGC 59.446 43.478 0.00 0.00 37.98 4.58
3056 3244 2.237143 TGATTGGAAGCATCGAGGACTT 59.763 45.455 0.00 3.68 0.00 3.01
3108 3296 0.467844 TTGGTGGCAGTGATGTGCTT 60.468 50.000 0.00 0.00 43.45 3.91
3127 3315 4.012374 GCTTCCAGATTCCAGAACAATGA 58.988 43.478 0.00 0.00 0.00 2.57
3206 3394 0.178953 ATGCTTGTCCTGGCCTTTGT 60.179 50.000 3.32 0.00 0.00 2.83
3245 3433 0.393402 TTCGTGGCCGAGAGCTAGTA 60.393 55.000 0.00 0.00 45.24 1.82
3366 3554 5.494724 CTCTTGATGGAGGTTTCTTGATGA 58.505 41.667 0.00 0.00 0.00 2.92
3369 3557 4.592942 TGATGGAGGTTTCTTGATGAAGG 58.407 43.478 0.00 0.00 35.89 3.46
3377 3572 5.893824 AGGTTTCTTGATGAAGGTTGAAAGT 59.106 36.000 0.00 0.00 35.89 2.66
3391 3586 8.879427 AAGGTTGAAAGTACTAGGCATATTTT 57.121 30.769 0.00 0.00 0.00 1.82
3392 3587 9.969001 AAGGTTGAAAGTACTAGGCATATTTTA 57.031 29.630 0.00 0.00 0.00 1.52
3396 3591 7.863722 TGAAAGTACTAGGCATATTTTACCCA 58.136 34.615 0.00 0.00 0.00 4.51
3402 3597 8.996271 GTACTAGGCATATTTTACCCAACATAC 58.004 37.037 0.00 0.00 0.00 2.39
3405 3600 6.668645 AGGCATATTTTACCCAACATACTGA 58.331 36.000 0.00 0.00 0.00 3.41
3420 3632 5.016173 ACATACTGAAAATTTGCTGGCCTA 58.984 37.500 3.32 0.00 0.00 3.93
3444 3670 5.060506 CCTGTAACACAAACCATGACAGTA 58.939 41.667 0.00 0.00 31.50 2.74
3488 3714 4.481463 GCATTTGCCTTTACTTTCGCTTA 58.519 39.130 0.00 0.00 34.31 3.09
3573 3841 7.665559 ACTTATTCACTTGGCACATAAAGAGAA 59.334 33.333 0.00 0.00 39.30 2.87
3586 3854 6.037940 CACATAAAGAGAACACATGGATCCAG 59.962 42.308 21.33 14.28 0.00 3.86
3598 3866 2.421725 TGGATCCAGTGGGCAATCTAT 58.578 47.619 11.44 0.00 0.00 1.98
3616 3884 9.331282 GCAATCTATAACTCTAGGAAAACATGT 57.669 33.333 0.00 0.00 0.00 3.21
3621 3889 7.907214 ATAACTCTAGGAAAACATGTGACAC 57.093 36.000 0.00 0.00 0.00 3.67
3622 3890 4.307432 ACTCTAGGAAAACATGTGACACG 58.693 43.478 0.00 0.00 0.00 4.49
3624 3892 5.147330 TCTAGGAAAACATGTGACACGAT 57.853 39.130 0.00 0.00 0.00 3.73
3628 3902 5.171476 AGGAAAACATGTGACACGATCTAG 58.829 41.667 0.00 0.00 0.00 2.43
3631 3905 6.757010 GGAAAACATGTGACACGATCTAGTAT 59.243 38.462 0.00 0.00 0.00 2.12
3639 3913 5.859114 GTGACACGATCTAGTATTATGCCAG 59.141 44.000 0.00 0.00 0.00 4.85
3641 3915 3.854240 CACGATCTAGTATTATGCCAGCG 59.146 47.826 0.00 0.00 0.00 5.18
3657 3931 3.862124 CGCTGCTCGCTTGTACTT 58.138 55.556 0.00 0.00 36.13 2.24
3658 3932 1.704582 CGCTGCTCGCTTGTACTTC 59.295 57.895 0.00 0.00 36.13 3.01
3659 3933 1.687494 CGCTGCTCGCTTGTACTTCC 61.687 60.000 0.00 0.00 36.13 3.46
3660 3934 0.390472 GCTGCTCGCTTGTACTTCCT 60.390 55.000 0.00 0.00 35.14 3.36
3661 3935 1.634702 CTGCTCGCTTGTACTTCCTC 58.365 55.000 0.00 0.00 0.00 3.71
3662 3936 0.246635 TGCTCGCTTGTACTTCCTCC 59.753 55.000 0.00 0.00 0.00 4.30
3663 3937 0.246635 GCTCGCTTGTACTTCCTCCA 59.753 55.000 0.00 0.00 0.00 3.86
3664 3938 1.134670 GCTCGCTTGTACTTCCTCCAT 60.135 52.381 0.00 0.00 0.00 3.41
3665 3939 2.678190 GCTCGCTTGTACTTCCTCCATT 60.678 50.000 0.00 0.00 0.00 3.16
3666 3940 3.190874 CTCGCTTGTACTTCCTCCATTC 58.809 50.000 0.00 0.00 0.00 2.67
3667 3941 2.565391 TCGCTTGTACTTCCTCCATTCA 59.435 45.455 0.00 0.00 0.00 2.57
3668 3942 2.673368 CGCTTGTACTTCCTCCATTCAC 59.327 50.000 0.00 0.00 0.00 3.18
3669 3943 3.674997 GCTTGTACTTCCTCCATTCACA 58.325 45.455 0.00 0.00 0.00 3.58
3670 3944 4.072131 GCTTGTACTTCCTCCATTCACAA 58.928 43.478 0.00 0.00 0.00 3.33
3671 3945 4.518970 GCTTGTACTTCCTCCATTCACAAA 59.481 41.667 0.00 0.00 0.00 2.83
3672 3946 5.183904 GCTTGTACTTCCTCCATTCACAAAT 59.816 40.000 0.00 0.00 0.00 2.32
3673 3947 6.374333 GCTTGTACTTCCTCCATTCACAAATA 59.626 38.462 0.00 0.00 0.00 1.40
3674 3948 7.067494 GCTTGTACTTCCTCCATTCACAAATAT 59.933 37.037 0.00 0.00 0.00 1.28
3675 3949 9.613428 CTTGTACTTCCTCCATTCACAAATATA 57.387 33.333 0.00 0.00 0.00 0.86
3676 3950 9.967451 TTGTACTTCCTCCATTCACAAATATAA 57.033 29.630 0.00 0.00 0.00 0.98
3677 3951 9.967451 TGTACTTCCTCCATTCACAAATATAAA 57.033 29.630 0.00 0.00 0.00 1.40
3684 3958 9.533253 CCTCCATTCACAAATATAAAATGTTCC 57.467 33.333 0.00 0.00 0.00 3.62
3711 3985 3.880047 TTTCCTGAATCGGATGTACGT 57.120 42.857 0.00 0.00 32.02 3.57
3712 3986 2.863401 TCCTGAATCGGATGTACGTG 57.137 50.000 0.00 0.00 34.94 4.49
3713 3987 1.407618 TCCTGAATCGGATGTACGTGG 59.592 52.381 0.00 0.00 34.94 4.94
3714 3988 1.407618 CCTGAATCGGATGTACGTGGA 59.592 52.381 0.00 0.00 34.94 4.02
3715 3989 2.460918 CTGAATCGGATGTACGTGGAC 58.539 52.381 0.00 0.00 34.94 4.02
3716 3990 1.819903 TGAATCGGATGTACGTGGACA 59.180 47.619 0.00 0.00 34.94 4.02
3717 3991 2.190981 GAATCGGATGTACGTGGACAC 58.809 52.381 0.00 0.00 34.94 3.67
3718 3992 1.179152 ATCGGATGTACGTGGACACA 58.821 50.000 0.00 0.00 34.94 3.72
3719 3993 1.179152 TCGGATGTACGTGGACACAT 58.821 50.000 0.00 0.00 38.08 3.21
3720 3994 1.546923 TCGGATGTACGTGGACACATT 59.453 47.619 0.00 0.00 35.55 2.71
3721 3995 2.028839 TCGGATGTACGTGGACACATTT 60.029 45.455 0.00 0.00 35.55 2.32
3722 3996 2.739913 CGGATGTACGTGGACACATTTT 59.260 45.455 0.00 0.00 35.55 1.82
3723 3997 3.927758 CGGATGTACGTGGACACATTTTA 59.072 43.478 0.00 0.00 35.55 1.52
3724 3998 4.569162 CGGATGTACGTGGACACATTTTAT 59.431 41.667 0.00 0.00 35.55 1.40
3725 3999 5.064198 CGGATGTACGTGGACACATTTTATT 59.936 40.000 0.00 0.00 35.55 1.40
3726 4000 6.255215 GGATGTACGTGGACACATTTTATTG 58.745 40.000 0.00 0.00 35.55 1.90
3727 4001 6.128117 GGATGTACGTGGACACATTTTATTGT 60.128 38.462 0.00 0.00 35.55 2.71
3740 4014 8.404889 CACATTTTATTGTGTTTGTTCACTCA 57.595 30.769 0.00 0.00 41.65 3.41
3741 4015 9.033481 CACATTTTATTGTGTTTGTTCACTCAT 57.967 29.630 0.00 0.00 41.65 2.90
3742 4016 9.598517 ACATTTTATTGTGTTTGTTCACTCATT 57.401 25.926 0.00 0.00 38.90 2.57
3745 4019 9.645059 TTTTATTGTGTTTGTTCACTCATTTCA 57.355 25.926 0.00 0.00 38.90 2.69
3746 4020 8.627487 TTATTGTGTTTGTTCACTCATTTCAC 57.373 30.769 0.00 0.00 38.90 3.18
3747 4021 5.895636 TGTGTTTGTTCACTCATTTCACT 57.104 34.783 0.00 0.00 38.90 3.41
3748 4022 6.266168 TGTGTTTGTTCACTCATTTCACTT 57.734 33.333 0.00 0.00 38.90 3.16
3749 4023 6.686630 TGTGTTTGTTCACTCATTTCACTTT 58.313 32.000 0.00 0.00 38.90 2.66
3750 4024 6.585702 TGTGTTTGTTCACTCATTTCACTTTG 59.414 34.615 0.00 0.00 38.90 2.77
3751 4025 6.586082 GTGTTTGTTCACTCATTTCACTTTGT 59.414 34.615 0.00 0.00 35.68 2.83
3752 4026 7.753132 GTGTTTGTTCACTCATTTCACTTTGTA 59.247 33.333 0.00 0.00 35.68 2.41
3753 4027 8.465999 TGTTTGTTCACTCATTTCACTTTGTAT 58.534 29.630 0.00 0.00 0.00 2.29
3754 4028 8.745837 GTTTGTTCACTCATTTCACTTTGTATG 58.254 33.333 0.00 0.00 0.00 2.39
3755 4029 7.566760 TGTTCACTCATTTCACTTTGTATGT 57.433 32.000 0.00 0.00 0.00 2.29
3756 4030 8.669946 TGTTCACTCATTTCACTTTGTATGTA 57.330 30.769 0.00 0.00 0.00 2.29
3757 4031 8.773645 TGTTCACTCATTTCACTTTGTATGTAG 58.226 33.333 0.00 0.00 0.00 2.74
3758 4032 8.774586 GTTCACTCATTTCACTTTGTATGTAGT 58.225 33.333 0.00 0.00 0.00 2.73
3759 4033 8.534333 TCACTCATTTCACTTTGTATGTAGTC 57.466 34.615 0.00 0.00 0.00 2.59
3760 4034 7.602644 TCACTCATTTCACTTTGTATGTAGTCC 59.397 37.037 0.00 0.00 0.00 3.85
3761 4035 7.387673 CACTCATTTCACTTTGTATGTAGTCCA 59.612 37.037 0.00 0.00 0.00 4.02
3762 4036 8.103305 ACTCATTTCACTTTGTATGTAGTCCAT 58.897 33.333 0.00 0.00 37.58 3.41
3763 4037 9.599866 CTCATTTCACTTTGTATGTAGTCCATA 57.400 33.333 0.00 0.00 34.86 2.74
3815 4089 7.925993 TGTGAACTACTATCAAAACAAACCAG 58.074 34.615 0.00 0.00 0.00 4.00
3850 4124 5.185454 TGAGTGAACAATGTTCTGAGTGTT 58.815 37.500 24.30 4.89 36.92 3.32
3855 4129 5.588246 TGAACAATGTTCTGAGTGTTGCTTA 59.412 36.000 24.30 0.00 34.44 3.09
3856 4130 6.262944 TGAACAATGTTCTGAGTGTTGCTTAT 59.737 34.615 24.30 0.00 34.44 1.73
3857 4131 7.443879 TGAACAATGTTCTGAGTGTTGCTTATA 59.556 33.333 24.30 0.00 34.44 0.98
3858 4132 7.928307 ACAATGTTCTGAGTGTTGCTTATAT 57.072 32.000 0.00 0.00 0.00 0.86
3860 4134 7.607607 ACAATGTTCTGAGTGTTGCTTATATCA 59.392 33.333 0.00 0.00 0.00 2.15
3861 4135 7.783090 ATGTTCTGAGTGTTGCTTATATCAG 57.217 36.000 0.00 0.00 36.38 2.90
3862 4136 5.582269 TGTTCTGAGTGTTGCTTATATCAGC 59.418 40.000 1.73 1.73 40.55 4.26
3863 4137 4.697514 TCTGAGTGTTGCTTATATCAGCC 58.302 43.478 6.44 0.00 39.25 4.85
3864 4138 4.162131 TCTGAGTGTTGCTTATATCAGCCA 59.838 41.667 6.44 0.00 39.25 4.75
3877 4151 8.748412 GCTTATATCAGCCATATCTAGGATAGG 58.252 40.741 0.00 0.00 34.84 2.57
3904 4193 3.244249 GGCTCCAGGGTACATACTTCATC 60.244 52.174 0.00 0.00 0.00 2.92
3921 4210 6.281405 ACTTCATCTACCGTCCATAAATCAC 58.719 40.000 0.00 0.00 0.00 3.06
3927 4216 8.659491 CATCTACCGTCCATAAATCACAATATG 58.341 37.037 0.00 0.00 0.00 1.78
3928 4217 7.732025 TCTACCGTCCATAAATCACAATATGT 58.268 34.615 0.00 0.00 0.00 2.29
3929 4218 8.862085 TCTACCGTCCATAAATCACAATATGTA 58.138 33.333 0.00 0.00 0.00 2.29
3931 4220 8.547967 ACCGTCCATAAATCACAATATGTATC 57.452 34.615 0.00 0.00 0.00 2.24
3952 4244 9.559732 TGTATCCTTTGGTTATTGATCATACAG 57.440 33.333 0.00 0.00 0.00 2.74
3958 4250 6.925610 TGGTTATTGATCATACAGCAGTTC 57.074 37.500 0.00 0.00 0.00 3.01
3960 4252 6.763135 TGGTTATTGATCATACAGCAGTTCTC 59.237 38.462 0.00 0.00 0.00 2.87
3965 4257 4.340666 TGATCATACAGCAGTTCTCTCTCC 59.659 45.833 0.00 0.00 0.00 3.71
3966 4258 3.701664 TCATACAGCAGTTCTCTCTCCA 58.298 45.455 0.00 0.00 0.00 3.86
3967 4259 4.285020 TCATACAGCAGTTCTCTCTCCAT 58.715 43.478 0.00 0.00 0.00 3.41
3968 4260 4.099113 TCATACAGCAGTTCTCTCTCCATG 59.901 45.833 0.00 0.00 0.00 3.66
3969 4261 1.066286 ACAGCAGTTCTCTCTCCATGC 60.066 52.381 0.00 0.00 0.00 4.06
3970 4262 1.066358 CAGCAGTTCTCTCTCCATGCA 60.066 52.381 0.00 0.00 36.15 3.96
3971 4263 1.838715 AGCAGTTCTCTCTCCATGCAT 59.161 47.619 0.00 0.00 36.15 3.96
3972 4264 2.158928 AGCAGTTCTCTCTCCATGCATC 60.159 50.000 0.00 0.00 36.15 3.91
3973 4265 2.419713 GCAGTTCTCTCTCCATGCATCA 60.420 50.000 0.00 0.00 33.92 3.07
3974 4266 3.459145 CAGTTCTCTCTCCATGCATCAG 58.541 50.000 0.00 0.00 0.00 2.90
3975 4267 3.132467 CAGTTCTCTCTCCATGCATCAGA 59.868 47.826 0.00 0.00 0.00 3.27
3976 4268 3.385433 AGTTCTCTCTCCATGCATCAGAG 59.615 47.826 20.00 20.00 35.86 3.35
3977 4269 2.317973 TCTCTCTCCATGCATCAGAGG 58.682 52.381 23.42 16.90 35.34 3.69
4010 4302 3.273434 GCCTGATGCTGAACACATCTTA 58.727 45.455 5.45 0.00 43.53 2.10
4025 4317 5.359576 ACACATCTTAAACAAGCCTGTGAAA 59.640 36.000 18.48 0.00 37.00 2.69
4026 4318 5.687285 CACATCTTAAACAAGCCTGTGAAAC 59.313 40.000 11.37 0.00 36.31 2.78
4038 4330 5.241662 AGCCTGTGAAACTCTTCTATTGAC 58.758 41.667 0.00 0.00 38.04 3.18
4039 4331 4.997395 GCCTGTGAAACTCTTCTATTGACA 59.003 41.667 0.00 0.00 38.04 3.58
4041 4333 6.150140 GCCTGTGAAACTCTTCTATTGACATT 59.850 38.462 0.00 0.00 38.04 2.71
4042 4334 7.524912 CCTGTGAAACTCTTCTATTGACATTG 58.475 38.462 0.00 0.00 38.04 2.82
4048 4340 6.734104 ACTCTTCTATTGACATTGCTGAAC 57.266 37.500 0.00 0.00 0.00 3.18
4060 4352 4.586001 ACATTGCTGAACTGGAACAAAGAT 59.414 37.500 0.00 0.00 38.70 2.40
4082 4374 2.228103 TGTCAGTGGTGTCATACGACTC 59.772 50.000 0.00 0.00 43.82 3.36
4096 4388 2.502295 ACGACTCGAGACCTAGTTGTT 58.498 47.619 21.68 0.00 37.08 2.83
4111 4403 6.651225 ACCTAGTTGTTAAGAGTGAAATCTGC 59.349 38.462 0.00 0.00 0.00 4.26
4124 4416 7.609146 AGAGTGAAATCTGCATCACATTAAGAA 59.391 33.333 17.90 0.00 46.55 2.52
4135 4427 6.142798 GCATCACATTAAGAACAAAGTGTGTG 59.857 38.462 0.00 0.00 40.60 3.82
4153 4445 4.041075 TGTGTGCCTTACTGACAAATAGGA 59.959 41.667 0.00 0.00 0.00 2.94
4154 4446 5.001232 GTGTGCCTTACTGACAAATAGGAA 58.999 41.667 0.00 0.00 0.00 3.36
4168 4460 7.093377 TGACAAATAGGAAAATTCAATCAGGGG 60.093 37.037 0.00 0.00 0.00 4.79
4171 4463 3.986435 AGGAAAATTCAATCAGGGGAGG 58.014 45.455 0.00 0.00 0.00 4.30
4175 4467 2.149973 ATTCAATCAGGGGAGGCAAC 57.850 50.000 0.00 0.00 0.00 4.17
4176 4468 0.776810 TTCAATCAGGGGAGGCAACA 59.223 50.000 0.00 0.00 41.41 3.33
4186 4486 4.709397 CAGGGGAGGCAACATATTGTTTTA 59.291 41.667 0.00 0.00 38.77 1.52
4192 4492 6.377327 AGGCAACATATTGTTTTAGATCCG 57.623 37.500 0.00 0.00 38.77 4.18
4193 4493 5.885912 AGGCAACATATTGTTTTAGATCCGT 59.114 36.000 0.00 0.00 38.77 4.69
4194 4494 6.377146 AGGCAACATATTGTTTTAGATCCGTT 59.623 34.615 0.00 0.00 38.77 4.44
4195 4495 7.554835 AGGCAACATATTGTTTTAGATCCGTTA 59.445 33.333 0.00 0.00 38.77 3.18
4196 4496 8.349983 GGCAACATATTGTTTTAGATCCGTTAT 58.650 33.333 0.00 0.00 38.77 1.89
4220 4520 1.271597 GGAAATGCTCACCTGGTCACT 60.272 52.381 0.00 0.00 0.00 3.41
4222 4522 0.036952 AATGCTCACCTGGTCACTCG 60.037 55.000 0.00 0.00 0.00 4.18
4224 4524 1.367840 GCTCACCTGGTCACTCGTT 59.632 57.895 0.00 0.00 0.00 3.85
4225 4525 0.601558 GCTCACCTGGTCACTCGTTA 59.398 55.000 0.00 0.00 0.00 3.18
4233 4537 3.439129 CCTGGTCACTCGTTATTTTTCCC 59.561 47.826 0.00 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.681793 TCTTCCTCCTTAAGCGGATCG 59.318 52.381 11.22 7.25 31.43 3.69
175 176 7.168219 ACAATTCTCTTAACAGCTGTCCAATA 58.832 34.615 21.95 5.78 0.00 1.90
312 313 1.145738 ACTGCAAACCCTCCAGTTGAT 59.854 47.619 0.00 0.00 36.48 2.57
352 354 4.389374 TGTTTCCTAGCACTCCAAGAAAG 58.611 43.478 0.00 0.00 0.00 2.62
436 438 5.179182 GCAACGATTCAACCCAAATGATTTT 59.821 36.000 0.00 0.00 0.00 1.82
619 621 5.989477 TCTGGAAGGAATGAATCGTATGTT 58.011 37.500 0.00 0.00 0.00 2.71
718 720 4.589374 ACCCTCCCTTAATCTCAACTATCG 59.411 45.833 0.00 0.00 0.00 2.92
910 920 3.813443 AGCGTTCCTACTATCCGTAGAA 58.187 45.455 0.93 0.00 46.98 2.10
935 945 4.923871 ACGCAGAGTAAAATAGTGTCAGTG 59.076 41.667 0.00 0.00 0.00 3.66
936 946 5.135508 ACGCAGAGTAAAATAGTGTCAGT 57.864 39.130 0.00 0.00 0.00 3.41
1011 1022 2.876645 CGCGAGGAGAGACAACGC 60.877 66.667 0.00 0.00 44.64 4.84
1073 1084 3.135942 GAGCACACCAAGAGAGCTC 57.864 57.895 5.27 5.27 43.95 4.09
1150 1161 0.037877 GGGGAGAGATATCGACGGGA 59.962 60.000 0.00 0.00 0.00 5.14
1200 1211 2.356818 ATAGACCAGGCGCTCGCTTC 62.357 60.000 7.64 6.03 41.60 3.86
1201 1212 2.356818 GATAGACCAGGCGCTCGCTT 62.357 60.000 7.64 3.33 41.60 4.68
1202 1213 2.835431 ATAGACCAGGCGCTCGCT 60.835 61.111 7.64 0.50 41.60 4.93
1203 1214 2.355244 GATAGACCAGGCGCTCGC 60.355 66.667 7.64 5.60 41.06 5.03
1204 1215 0.032678 ATTGATAGACCAGGCGCTCG 59.967 55.000 7.64 0.00 0.00 5.03
1250 1263 0.106918 ATCCGACGGAGAGAAGAGCT 60.107 55.000 22.99 0.00 34.05 4.09
1264 1277 2.761195 CGTGGAGCGAGACATCCGA 61.761 63.158 0.00 0.00 44.77 4.55
1266 1279 2.583593 GCGTGGAGCGAGACATCC 60.584 66.667 0.00 0.00 44.77 3.51
1374 1387 1.202330 AAGCCAGTCCAGATCTCCTG 58.798 55.000 0.00 0.00 42.55 3.86
1404 1417 2.808244 CGAGAGGATCAGAGAAACAGC 58.192 52.381 0.00 0.00 37.82 4.40
1424 1437 4.171754 GCAACAGAATCAGAGGAAAATGC 58.828 43.478 0.00 0.00 0.00 3.56
1426 1439 4.670765 AGGCAACAGAATCAGAGGAAAAT 58.329 39.130 0.00 0.00 41.41 1.82
1507 1520 2.715749 TTGTACCAGATGCATGGAGG 57.284 50.000 13.35 9.88 43.57 4.30
1529 1542 4.015084 AGAAGAAGCAGACAATTGATGGG 58.985 43.478 13.59 0.00 0.00 4.00
1535 1548 6.639632 TTAAAGCAGAAGAAGCAGACAATT 57.360 33.333 0.00 0.00 0.00 2.32
1558 1571 3.321111 GCAGGCAATGGATGATTCAGAAT 59.679 43.478 0.00 0.00 0.00 2.40
1564 1577 2.447408 TGAGCAGGCAATGGATGATT 57.553 45.000 0.00 0.00 0.00 2.57
1576 1600 5.292834 CAGTAGTAACATGACAATGAGCAGG 59.707 44.000 0.00 0.00 37.24 4.85
1664 1690 5.871396 TTCCAAGTCTCAACTACTGAAGT 57.129 39.130 0.00 0.00 41.49 3.01
1677 1703 3.202151 TCTGGTTGACCTTTTCCAAGTCT 59.798 43.478 1.34 0.00 36.82 3.24
1741 1767 2.762887 CTCTCCTAGCACCATGTCAGAA 59.237 50.000 0.00 0.00 0.00 3.02
1743 1769 1.411977 CCTCTCCTAGCACCATGTCAG 59.588 57.143 0.00 0.00 0.00 3.51
1744 1770 1.007118 TCCTCTCCTAGCACCATGTCA 59.993 52.381 0.00 0.00 0.00 3.58
1806 1859 6.155393 AGGGTGTGGTATTTCTCAAAAACAAA 59.845 34.615 0.00 0.00 0.00 2.83
1809 1871 5.784578 AGGGTGTGGTATTTCTCAAAAAC 57.215 39.130 0.00 0.00 0.00 2.43
1815 1877 3.344515 GTGGAAGGGTGTGGTATTTCTC 58.655 50.000 0.00 0.00 0.00 2.87
1826 1888 4.722700 CTGGGCCGTGGAAGGGTG 62.723 72.222 0.00 0.00 45.59 4.61
1828 1890 1.921869 AATACTGGGCCGTGGAAGGG 61.922 60.000 10.60 0.00 46.87 3.95
1831 1893 1.208535 CTGTAATACTGGGCCGTGGAA 59.791 52.381 10.60 0.00 0.00 3.53
1832 1894 0.828022 CTGTAATACTGGGCCGTGGA 59.172 55.000 10.60 0.00 0.00 4.02
1834 1896 3.379650 CCTGTAATACTGGGCCGTG 57.620 57.895 8.28 3.25 34.03 4.94
1840 1902 6.040842 CCAATGGATTTTCCCTGTAATACTGG 59.959 42.308 9.10 9.10 35.03 4.00
1841 1903 6.040842 CCCAATGGATTTTCCCTGTAATACTG 59.959 42.308 0.00 0.00 35.03 2.74
1842 1904 6.136155 CCCAATGGATTTTCCCTGTAATACT 58.864 40.000 0.00 0.00 35.03 2.12
1843 1905 5.304357 CCCCAATGGATTTTCCCTGTAATAC 59.696 44.000 0.00 0.00 35.03 1.89
1844 1906 5.463154 CCCCAATGGATTTTCCCTGTAATA 58.537 41.667 0.00 0.00 35.03 0.98
1845 1907 4.297768 CCCCAATGGATTTTCCCTGTAAT 58.702 43.478 0.00 0.00 35.03 1.89
1846 1908 3.567663 CCCCCAATGGATTTTCCCTGTAA 60.568 47.826 0.00 0.00 35.03 2.41
1847 1909 2.023501 CCCCCAATGGATTTTCCCTGTA 60.024 50.000 0.00 0.00 35.03 2.74
1849 1911 1.499368 CCCCCAATGGATTTTCCCTG 58.501 55.000 0.00 0.00 35.03 4.45
1850 1912 0.326522 GCCCCCAATGGATTTTCCCT 60.327 55.000 0.00 0.00 35.03 4.20
1851 1913 0.620121 TGCCCCCAATGGATTTTCCC 60.620 55.000 0.00 0.00 35.03 3.97
1852 1914 0.832626 CTGCCCCCAATGGATTTTCC 59.167 55.000 0.00 0.00 36.96 3.13
1853 1915 0.832626 CCTGCCCCCAATGGATTTTC 59.167 55.000 0.00 0.00 35.39 2.29
1858 1920 2.286808 TAGCCTGCCCCCAATGGA 60.287 61.111 0.00 0.00 35.39 3.41
1860 1922 1.454479 CAGTAGCCTGCCCCCAATG 60.454 63.158 0.00 0.00 0.00 2.82
1861 1923 2.693871 CCAGTAGCCTGCCCCCAAT 61.694 63.158 0.00 0.00 37.38 3.16
1872 1934 2.125106 CTTCCACGGCCCAGTAGC 60.125 66.667 0.00 0.00 0.00 3.58
1873 1935 2.125106 GCTTCCACGGCCCAGTAG 60.125 66.667 0.00 0.00 0.00 2.57
1897 2024 1.368579 CCGGTAAGAACACCACGGT 59.631 57.895 0.00 0.00 38.61 4.83
1955 2082 1.738099 CTTCACTCGGGCGAACCAG 60.738 63.158 0.00 0.00 40.22 4.00
1957 2084 3.119096 GCTTCACTCGGGCGAACC 61.119 66.667 0.00 0.00 0.00 3.62
1958 2085 2.357034 TGCTTCACTCGGGCGAAC 60.357 61.111 0.00 0.00 0.00 3.95
1959 2086 2.357034 GTGCTTCACTCGGGCGAA 60.357 61.111 0.00 0.00 0.00 4.70
1960 2087 4.717629 CGTGCTTCACTCGGGCGA 62.718 66.667 0.00 0.00 31.34 5.54
2033 2160 5.013183 CCCCTCCTTTTATATCTCCATCGTT 59.987 44.000 0.00 0.00 0.00 3.85
2038 2165 3.652869 CTGCCCCTCCTTTTATATCTCCA 59.347 47.826 0.00 0.00 0.00 3.86
2069 2196 3.456277 AGGCCGAGAAAGGTATGATTTCT 59.544 43.478 0.00 0.79 46.89 2.52
2202 2342 1.000896 CAACACCTAAGGGCCCCAG 60.001 63.158 21.43 16.57 35.63 4.45
2214 2354 2.978018 GCAACGCCTAGGCAACACC 61.978 63.158 32.47 12.95 42.06 4.16
2219 2359 1.079405 GTAGTGCAACGCCTAGGCA 60.079 57.895 32.47 10.81 45.86 4.75
2224 2364 2.358737 GGCTGTAGTGCAACGCCT 60.359 61.111 13.61 0.00 45.86 5.52
2232 2372 0.608130 TGTAGTGGCAGGCTGTAGTG 59.392 55.000 17.16 0.00 0.00 2.74
2233 2373 0.898320 CTGTAGTGGCAGGCTGTAGT 59.102 55.000 17.16 10.93 33.11 2.73
2234 2374 0.460987 GCTGTAGTGGCAGGCTGTAG 60.461 60.000 17.16 4.89 37.00 2.74
2235 2375 1.596934 GCTGTAGTGGCAGGCTGTA 59.403 57.895 17.16 2.72 37.00 2.74
2236 2376 2.348998 GCTGTAGTGGCAGGCTGT 59.651 61.111 17.16 0.00 37.00 4.40
2240 2380 2.270205 CAGGGCTGTAGTGGCAGG 59.730 66.667 0.00 0.00 37.00 4.85
2241 2381 2.270205 CCAGGGCTGTAGTGGCAG 59.730 66.667 0.00 0.00 39.37 4.85
2244 2384 2.270205 CTGCCAGGGCTGTAGTGG 59.730 66.667 12.19 0.00 42.51 4.00
2272 2412 9.541143 TCAGGGAAATTTGAAATTAGTTTTGAC 57.459 29.630 3.26 0.00 0.00 3.18
2350 2499 2.621055 TGGCGATTTAGTTGCAACAAGT 59.379 40.909 30.11 18.10 39.13 3.16
2394 2543 6.714810 ACCTTTGATGCATCTACAACAAGTAA 59.285 34.615 26.32 6.47 34.38 2.24
2395 2544 6.237901 ACCTTTGATGCATCTACAACAAGTA 58.762 36.000 26.32 0.00 34.38 2.24
2406 2555 8.798153 CGTTCTTAATTTTACCTTTGATGCATC 58.202 33.333 20.14 20.14 0.00 3.91
2412 2561 7.499321 TCAGCGTTCTTAATTTTACCTTTGA 57.501 32.000 0.00 0.00 0.00 2.69
2431 2580 4.029418 CGCACTTTGAAAAACATATCAGCG 59.971 41.667 0.00 0.00 0.00 5.18
2434 2583 4.233789 GGCGCACTTTGAAAAACATATCA 58.766 39.130 10.83 0.00 0.00 2.15
2436 2585 3.006323 TGGGCGCACTTTGAAAAACATAT 59.994 39.130 12.74 0.00 0.00 1.78
2457 2606 1.267806 AGAGCCAGCGAAACAACATTG 59.732 47.619 0.00 0.00 0.00 2.82
2459 2608 2.472695 TAGAGCCAGCGAAACAACAT 57.527 45.000 0.00 0.00 0.00 2.71
2460 2609 2.472695 ATAGAGCCAGCGAAACAACA 57.527 45.000 0.00 0.00 0.00 3.33
2465 2641 5.488341 AGTAAGAAAATAGAGCCAGCGAAA 58.512 37.500 0.00 0.00 0.00 3.46
2515 2697 3.222603 ACTTCGCTGAGGGAAAACAAAT 58.777 40.909 13.08 0.00 34.27 2.32
2518 2700 3.478857 TTACTTCGCTGAGGGAAAACA 57.521 42.857 13.08 0.00 34.27 2.83
2519 2701 4.379499 CCATTTACTTCGCTGAGGGAAAAC 60.379 45.833 13.08 0.00 34.27 2.43
2520 2702 3.756434 CCATTTACTTCGCTGAGGGAAAA 59.244 43.478 13.08 5.48 34.27 2.29
2618 2802 0.324614 GGCTTTTTGGAACATGGGGG 59.675 55.000 0.00 0.00 39.30 5.40
2619 2803 0.037419 CGGCTTTTTGGAACATGGGG 60.037 55.000 0.00 0.00 39.30 4.96
2620 2804 0.670239 GCGGCTTTTTGGAACATGGG 60.670 55.000 0.00 0.00 39.30 4.00
2621 2805 1.008361 CGCGGCTTTTTGGAACATGG 61.008 55.000 0.00 0.00 39.30 3.66
2622 2806 0.318614 ACGCGGCTTTTTGGAACATG 60.319 50.000 12.47 0.00 39.30 3.21
2623 2807 0.039527 GACGCGGCTTTTTGGAACAT 60.040 50.000 12.47 0.00 39.30 2.71
2624 2808 1.357334 GACGCGGCTTTTTGGAACA 59.643 52.632 12.47 0.00 0.00 3.18
2627 2811 2.203224 TGGACGCGGCTTTTTGGA 60.203 55.556 13.91 0.00 0.00 3.53
2635 2819 2.357760 TAAGTTGGTGGACGCGGC 60.358 61.111 12.47 7.53 0.00 6.53
2653 2837 7.873739 AGAAAAGAAAACATGCTAATTTCCG 57.126 32.000 0.00 0.00 34.39 4.30
2690 2874 4.698276 CTTGACGATTTTACAGTGGAACG 58.302 43.478 0.00 0.00 45.86 3.95
2696 2880 4.804139 CGATAGGCTTGACGATTTTACAGT 59.196 41.667 0.00 0.00 0.00 3.55
2697 2881 4.318121 GCGATAGGCTTGACGATTTTACAG 60.318 45.833 10.73 0.00 39.11 2.74
2712 2896 6.462073 TTGACGATATTTTTAGCGATAGGC 57.538 37.500 0.00 0.00 44.05 3.93
2713 2897 6.401153 GGCTTGACGATATTTTTAGCGATAGG 60.401 42.308 0.00 0.00 32.67 2.57
2714 2898 6.366332 AGGCTTGACGATATTTTTAGCGATAG 59.634 38.462 0.00 0.00 32.67 2.08
2715 2899 6.220930 AGGCTTGACGATATTTTTAGCGATA 58.779 36.000 0.00 0.00 32.67 2.92
2716 2900 5.057149 AGGCTTGACGATATTTTTAGCGAT 58.943 37.500 0.00 0.00 32.67 4.58
2717 2901 4.439057 AGGCTTGACGATATTTTTAGCGA 58.561 39.130 0.00 0.00 32.67 4.93
2718 2902 4.270084 TGAGGCTTGACGATATTTTTAGCG 59.730 41.667 0.00 0.00 34.72 4.26
2719 2903 5.734855 TGAGGCTTGACGATATTTTTAGC 57.265 39.130 0.00 0.00 0.00 3.09
2727 2911 5.753438 GTGTGATTAATGAGGCTTGACGATA 59.247 40.000 0.00 0.00 0.00 2.92
3056 3244 1.827789 GTTGCACTGGGAGGCACAA 60.828 57.895 0.00 0.00 40.23 3.33
3108 3296 5.494724 CTCTTCATTGTTCTGGAATCTGGA 58.505 41.667 0.00 0.00 0.00 3.86
3127 3315 2.039613 CAGGAGAGCCTTTGTTCCTCTT 59.960 50.000 0.00 0.00 43.90 2.85
3206 3394 4.641989 CGAAGGTTAGGTAGTACCAAGCTA 59.358 45.833 24.11 8.60 41.95 3.32
3245 3433 8.295288 GCAATGATATGAATCTTCTCCGAATTT 58.705 33.333 0.00 0.00 32.93 1.82
3366 3554 8.879427 AAAATATGCCTAGTACTTTCAACCTT 57.121 30.769 0.00 0.00 0.00 3.50
3369 3557 8.618677 GGGTAAAATATGCCTAGTACTTTCAAC 58.381 37.037 0.00 0.00 33.60 3.18
3377 3572 8.940982 AGTATGTTGGGTAAAATATGCCTAGTA 58.059 33.333 0.00 0.00 33.60 1.82
3391 3586 6.295011 CCAGCAAATTTTCAGTATGTTGGGTA 60.295 38.462 0.00 0.00 38.33 3.69
3392 3587 5.511202 CCAGCAAATTTTCAGTATGTTGGGT 60.511 40.000 0.00 0.00 38.33 4.51
3396 3591 4.284234 AGGCCAGCAAATTTTCAGTATGTT 59.716 37.500 5.01 0.00 37.40 2.71
3402 3597 2.827921 AGGTAGGCCAGCAAATTTTCAG 59.172 45.455 5.01 0.00 37.19 3.02
3405 3600 2.608623 ACAGGTAGGCCAGCAAATTTT 58.391 42.857 5.01 0.00 37.19 1.82
3420 3632 3.882888 CTGTCATGGTTTGTGTTACAGGT 59.117 43.478 0.00 0.00 31.46 4.00
3444 3670 4.160252 GCCCCATTCATACATTTCAGTGTT 59.840 41.667 0.00 0.00 33.62 3.32
3452 3678 4.075963 GCAAATGCCCCATTCATACATT 57.924 40.909 0.00 0.00 32.43 2.71
3537 3763 7.928706 GTGCCAAGTGAATAAGTACTAGATCAT 59.071 37.037 0.00 0.00 0.00 2.45
3560 3828 5.220931 GGATCCATGTGTTCTCTTTATGTGC 60.221 44.000 6.95 0.00 0.00 4.57
3573 3841 1.304282 GCCCACTGGATCCATGTGT 59.696 57.895 27.90 17.45 0.00 3.72
3586 3854 6.420913 TTCCTAGAGTTATAGATTGCCCAC 57.579 41.667 0.00 0.00 0.00 4.61
3598 3866 5.924254 CGTGTCACATGTTTTCCTAGAGTTA 59.076 40.000 0.00 0.00 0.00 2.24
3616 3884 5.564848 GCTGGCATAATACTAGATCGTGTCA 60.565 44.000 0.00 0.00 0.00 3.58
3617 3885 4.859798 GCTGGCATAATACTAGATCGTGTC 59.140 45.833 0.00 0.00 0.00 3.67
3618 3886 4.616143 CGCTGGCATAATACTAGATCGTGT 60.616 45.833 0.00 0.00 0.00 4.49
3619 3887 3.854240 CGCTGGCATAATACTAGATCGTG 59.146 47.826 0.00 0.00 0.00 4.35
3621 3889 2.854777 GCGCTGGCATAATACTAGATCG 59.145 50.000 0.00 0.00 39.62 3.69
3622 3890 3.862267 CAGCGCTGGCATAATACTAGATC 59.138 47.826 29.88 0.00 43.41 2.75
3624 3892 2.610479 GCAGCGCTGGCATAATACTAGA 60.610 50.000 36.47 0.00 43.41 2.43
3628 3902 0.514691 GAGCAGCGCTGGCATAATAC 59.485 55.000 36.47 18.31 39.88 1.89
3631 3905 2.891936 CGAGCAGCGCTGGCATAA 60.892 61.111 36.47 0.00 39.88 1.90
3658 3932 9.533253 GGAACATTTTATATTTGTGAATGGAGG 57.467 33.333 0.00 0.00 33.25 4.30
3689 3963 4.390603 CACGTACATCCGATTCAGGAAAAA 59.609 41.667 0.00 0.00 44.50 1.94
3690 3964 3.930229 CACGTACATCCGATTCAGGAAAA 59.070 43.478 0.00 0.00 44.50 2.29
3691 3965 3.517602 CACGTACATCCGATTCAGGAAA 58.482 45.455 0.00 0.00 44.50 3.13
3692 3966 2.159156 CCACGTACATCCGATTCAGGAA 60.159 50.000 0.00 0.00 44.50 3.36
3693 3967 1.407618 CCACGTACATCCGATTCAGGA 59.592 52.381 0.00 0.78 45.54 3.86
3694 3968 1.407618 TCCACGTACATCCGATTCAGG 59.592 52.381 0.00 0.00 0.00 3.86
3695 3969 2.159296 TGTCCACGTACATCCGATTCAG 60.159 50.000 0.00 0.00 0.00 3.02
3696 3970 1.819903 TGTCCACGTACATCCGATTCA 59.180 47.619 0.00 0.00 0.00 2.57
3697 3971 2.190981 GTGTCCACGTACATCCGATTC 58.809 52.381 0.00 0.00 0.00 2.52
3698 3972 1.546923 TGTGTCCACGTACATCCGATT 59.453 47.619 0.00 0.00 0.00 3.34
3699 3973 1.179152 TGTGTCCACGTACATCCGAT 58.821 50.000 0.00 0.00 0.00 4.18
3700 3974 1.179152 ATGTGTCCACGTACATCCGA 58.821 50.000 0.00 0.00 32.32 4.55
3701 3975 2.004583 AATGTGTCCACGTACATCCG 57.995 50.000 2.31 0.00 36.56 4.18
3702 3976 6.128117 ACAATAAAATGTGTCCACGTACATCC 60.128 38.462 2.31 0.00 36.56 3.51
3703 3977 6.740905 CACAATAAAATGTGTCCACGTACATC 59.259 38.462 2.31 0.00 44.46 3.06
3704 3978 6.607689 CACAATAAAATGTGTCCACGTACAT 58.392 36.000 0.00 0.00 44.46 2.29
3705 3979 5.991568 CACAATAAAATGTGTCCACGTACA 58.008 37.500 0.00 0.00 44.46 2.90
3716 3990 9.598517 AATGAGTGAACAAACACAATAAAATGT 57.401 25.926 0.00 0.00 42.45 2.71
3719 3993 9.645059 TGAAATGAGTGAACAAACACAATAAAA 57.355 25.926 0.00 0.00 42.45 1.52
3720 3994 9.081997 GTGAAATGAGTGAACAAACACAATAAA 57.918 29.630 0.00 0.00 42.45 1.40
3721 3995 8.465999 AGTGAAATGAGTGAACAAACACAATAA 58.534 29.630 0.00 0.00 42.45 1.40
3722 3996 7.995289 AGTGAAATGAGTGAACAAACACAATA 58.005 30.769 0.00 0.00 42.45 1.90
3723 3997 6.866480 AGTGAAATGAGTGAACAAACACAAT 58.134 32.000 0.00 0.00 42.45 2.71
3724 3998 6.266168 AGTGAAATGAGTGAACAAACACAA 57.734 33.333 0.00 0.00 42.45 3.33
3725 3999 5.895636 AGTGAAATGAGTGAACAAACACA 57.104 34.783 0.00 0.00 42.45 3.72
3726 4000 6.586082 ACAAAGTGAAATGAGTGAACAAACAC 59.414 34.615 0.00 0.00 40.60 3.32
3727 4001 6.686630 ACAAAGTGAAATGAGTGAACAAACA 58.313 32.000 0.00 0.00 0.00 2.83
3728 4002 8.745837 CATACAAAGTGAAATGAGTGAACAAAC 58.254 33.333 0.00 0.00 0.00 2.93
3729 4003 8.465999 ACATACAAAGTGAAATGAGTGAACAAA 58.534 29.630 0.00 0.00 0.00 2.83
3730 4004 7.995289 ACATACAAAGTGAAATGAGTGAACAA 58.005 30.769 0.00 0.00 0.00 2.83
3731 4005 7.566760 ACATACAAAGTGAAATGAGTGAACA 57.433 32.000 0.00 0.00 0.00 3.18
3732 4006 8.774586 ACTACATACAAAGTGAAATGAGTGAAC 58.225 33.333 0.00 0.00 0.00 3.18
3733 4007 8.902540 ACTACATACAAAGTGAAATGAGTGAA 57.097 30.769 0.00 0.00 0.00 3.18
3734 4008 7.602644 GGACTACATACAAAGTGAAATGAGTGA 59.397 37.037 0.00 0.00 0.00 3.41
3735 4009 7.387673 TGGACTACATACAAAGTGAAATGAGTG 59.612 37.037 0.00 0.00 0.00 3.51
3736 4010 7.450074 TGGACTACATACAAAGTGAAATGAGT 58.550 34.615 0.00 0.00 0.00 3.41
3737 4011 7.905604 TGGACTACATACAAAGTGAAATGAG 57.094 36.000 0.00 0.00 0.00 2.90
3788 4062 9.562408 TGGTTTGTTTTGATAGTAGTTCACATA 57.438 29.630 0.00 0.00 0.00 2.29
3789 4063 8.458573 TGGTTTGTTTTGATAGTAGTTCACAT 57.541 30.769 0.00 0.00 0.00 3.21
3790 4064 7.771361 TCTGGTTTGTTTTGATAGTAGTTCACA 59.229 33.333 0.00 0.00 0.00 3.58
3791 4065 8.149973 TCTGGTTTGTTTTGATAGTAGTTCAC 57.850 34.615 0.00 0.00 0.00 3.18
3792 4066 8.918202 ATCTGGTTTGTTTTGATAGTAGTTCA 57.082 30.769 0.00 0.00 0.00 3.18
3805 4079 7.014615 ACTCAGAAGCAAATATCTGGTTTGTTT 59.985 33.333 0.00 1.29 42.62 2.83
3812 4086 5.645067 TGTTCACTCAGAAGCAAATATCTGG 59.355 40.000 3.23 0.00 42.62 3.86
3815 4089 7.533426 ACATTGTTCACTCAGAAGCAAATATC 58.467 34.615 0.00 0.00 36.78 1.63
3822 4096 4.512944 TCAGAACATTGTTCACTCAGAAGC 59.487 41.667 26.73 1.59 36.78 3.86
3850 4124 9.306777 CTATCCTAGATATGGCTGATATAAGCA 57.693 37.037 14.29 0.85 45.43 3.91
3855 4129 8.686245 TGATCCTATCCTAGATATGGCTGATAT 58.314 37.037 0.00 0.00 0.00 1.63
3856 4130 8.061890 TGATCCTATCCTAGATATGGCTGATA 57.938 38.462 0.00 0.00 0.00 2.15
3857 4131 6.931614 TGATCCTATCCTAGATATGGCTGAT 58.068 40.000 0.00 0.00 0.00 2.90
3858 4132 6.347061 TGATCCTATCCTAGATATGGCTGA 57.653 41.667 0.00 0.00 0.00 4.26
3860 4134 5.714863 CCTGATCCTATCCTAGATATGGCT 58.285 45.833 0.00 0.00 0.00 4.75
3861 4135 4.283212 GCCTGATCCTATCCTAGATATGGC 59.717 50.000 0.00 0.00 0.00 4.40
3862 4136 5.714863 AGCCTGATCCTATCCTAGATATGG 58.285 45.833 0.00 0.00 0.00 2.74
3863 4137 5.774690 GGAGCCTGATCCTATCCTAGATATG 59.225 48.000 0.00 0.00 36.35 1.78
3864 4138 5.438050 TGGAGCCTGATCCTATCCTAGATAT 59.562 44.000 2.78 0.00 40.29 1.63
3877 4151 1.428869 ATGTACCCTGGAGCCTGATC 58.571 55.000 0.00 0.00 0.00 2.92
3904 4193 7.962964 ACATATTGTGATTTATGGACGGTAG 57.037 36.000 0.00 0.00 31.46 3.18
3927 4216 8.507249 GCTGTATGATCAATAACCAAAGGATAC 58.493 37.037 0.00 0.00 0.00 2.24
3928 4217 8.217111 TGCTGTATGATCAATAACCAAAGGATA 58.783 33.333 0.00 0.00 0.00 2.59
3929 4218 7.062322 TGCTGTATGATCAATAACCAAAGGAT 58.938 34.615 0.00 0.00 0.00 3.24
3931 4220 6.319658 ACTGCTGTATGATCAATAACCAAAGG 59.680 38.462 0.00 0.00 0.00 3.11
3936 4228 6.989169 AGAGAACTGCTGTATGATCAATAACC 59.011 38.462 0.00 0.00 0.00 2.85
3940 4232 6.462768 GGAGAGAGAACTGCTGTATGATCAAT 60.463 42.308 0.00 0.00 0.00 2.57
3952 4244 2.211806 GATGCATGGAGAGAGAACTGC 58.788 52.381 2.46 0.00 0.00 4.40
3958 4250 2.036217 GACCTCTGATGCATGGAGAGAG 59.964 54.545 24.71 18.31 36.14 3.20
3960 4252 1.761198 TGACCTCTGATGCATGGAGAG 59.239 52.381 21.16 20.23 34.20 3.20
3965 4257 1.139256 AGCTCTGACCTCTGATGCATG 59.861 52.381 2.46 0.00 0.00 4.06
3966 4258 1.139256 CAGCTCTGACCTCTGATGCAT 59.861 52.381 0.00 0.00 0.00 3.96
3967 4259 0.535797 CAGCTCTGACCTCTGATGCA 59.464 55.000 0.00 0.00 0.00 3.96
3968 4260 0.822811 TCAGCTCTGACCTCTGATGC 59.177 55.000 0.00 0.00 34.14 3.91
3970 4262 1.413445 GCATCAGCTCTGACCTCTGAT 59.587 52.381 1.15 0.00 45.43 2.90
3971 4263 0.822811 GCATCAGCTCTGACCTCTGA 59.177 55.000 1.15 0.00 43.11 3.27
3972 4264 0.179078 GGCATCAGCTCTGACCTCTG 60.179 60.000 1.15 0.00 43.11 3.35
3973 4265 0.325484 AGGCATCAGCTCTGACCTCT 60.325 55.000 1.15 0.00 43.11 3.69
3974 4266 0.179078 CAGGCATCAGCTCTGACCTC 60.179 60.000 1.15 0.00 43.11 3.85
3975 4267 0.616964 TCAGGCATCAGCTCTGACCT 60.617 55.000 1.15 2.75 43.11 3.85
3976 4268 0.469070 ATCAGGCATCAGCTCTGACC 59.531 55.000 4.33 0.38 44.82 4.02
3977 4269 1.584175 CATCAGGCATCAGCTCTGAC 58.416 55.000 4.33 0.00 44.82 3.51
4010 4302 4.273318 AGAAGAGTTTCACAGGCTTGTTT 58.727 39.130 0.00 0.00 34.62 2.83
4025 4317 6.370994 CAGTTCAGCAATGTCAATAGAAGAGT 59.629 38.462 0.00 0.00 0.00 3.24
4026 4318 6.183360 CCAGTTCAGCAATGTCAATAGAAGAG 60.183 42.308 0.00 0.00 0.00 2.85
4038 4330 4.572985 TCTTTGTTCCAGTTCAGCAATG 57.427 40.909 0.00 0.00 0.00 2.82
4039 4331 5.069516 ACAATCTTTGTTCCAGTTCAGCAAT 59.930 36.000 0.00 0.00 42.22 3.56
4041 4333 3.953612 ACAATCTTTGTTCCAGTTCAGCA 59.046 39.130 0.00 0.00 42.22 4.41
4042 4334 4.036734 TGACAATCTTTGTTCCAGTTCAGC 59.963 41.667 0.00 0.00 45.52 4.26
4048 4340 3.885297 ACCACTGACAATCTTTGTTCCAG 59.115 43.478 7.25 7.25 45.52 3.86
4060 4352 3.021269 GTCGTATGACACCACTGACAA 57.979 47.619 10.30 0.00 44.82 3.18
4082 4374 5.624344 TCACTCTTAACAACTAGGTCTCG 57.376 43.478 0.00 0.00 0.00 4.04
4096 4388 8.791327 TTAATGTGATGCAGATTTCACTCTTA 57.209 30.769 16.79 12.09 42.17 2.10
4111 4403 6.142798 GCACACACTTTGTTCTTAATGTGATG 59.857 38.462 9.02 5.19 39.83 3.07
4124 4416 2.943033 GTCAGTAAGGCACACACTTTGT 59.057 45.455 0.00 0.00 39.97 2.83
4135 4427 7.826690 TGAATTTTCCTATTTGTCAGTAAGGC 58.173 34.615 0.00 0.00 0.00 4.35
4153 4445 3.188880 TGCCTCCCCTGATTGAATTTT 57.811 42.857 0.00 0.00 0.00 1.82
4154 4446 2.833943 GTTGCCTCCCCTGATTGAATTT 59.166 45.455 0.00 0.00 0.00 1.82
4163 4455 2.442236 ACAATATGTTGCCTCCCCTG 57.558 50.000 1.57 0.00 38.96 4.45
4165 4457 4.953579 TCTAAAACAATATGTTGCCTCCCC 59.046 41.667 1.57 0.00 40.14 4.81
4168 4460 6.038271 ACGGATCTAAAACAATATGTTGCCTC 59.962 38.462 1.57 0.00 40.14 4.70
4171 4463 9.730420 AATAACGGATCTAAAACAATATGTTGC 57.270 29.630 1.57 0.00 40.14 4.17
4175 4467 9.663904 CCACAATAACGGATCTAAAACAATATG 57.336 33.333 0.00 0.00 0.00 1.78
4176 4468 9.621629 TCCACAATAACGGATCTAAAACAATAT 57.378 29.630 0.00 0.00 0.00 1.28
4186 4486 4.526970 AGCATTTCCACAATAACGGATCT 58.473 39.130 0.00 0.00 0.00 2.75
4192 4492 4.380867 CCAGGTGAGCATTTCCACAATAAC 60.381 45.833 0.00 0.00 35.13 1.89
4193 4493 3.763360 CCAGGTGAGCATTTCCACAATAA 59.237 43.478 0.00 0.00 35.13 1.40
4194 4494 3.245229 ACCAGGTGAGCATTTCCACAATA 60.245 43.478 0.00 0.00 35.13 1.90
4195 4495 2.173519 CCAGGTGAGCATTTCCACAAT 58.826 47.619 0.00 0.00 35.13 2.71
4196 4496 1.133513 ACCAGGTGAGCATTTCCACAA 60.134 47.619 0.00 0.00 35.13 3.33
4198 4498 1.168714 GACCAGGTGAGCATTTCCAC 58.831 55.000 0.00 0.00 0.00 4.02
4220 4520 5.433526 CATCCTACTGGGGAAAAATAACGA 58.566 41.667 0.00 0.00 39.02 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.