Multiple sequence alignment - TraesCS7D01G427300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G427300 chr7D 100.000 3085 0 0 1 3085 548324104 548327188 0.000000e+00 5698.0
1 TraesCS7D01G427300 chr7D 88.662 1323 76 31 814 2105 548066896 548065617 0.000000e+00 1544.0
2 TraesCS7D01G427300 chr7D 92.065 1046 56 10 814 1842 548560726 548561761 0.000000e+00 1447.0
3 TraesCS7D01G427300 chr7D 82.567 1262 105 37 645 1825 573968913 573970140 0.000000e+00 1005.0
4 TraesCS7D01G427300 chr7D 80.327 1408 129 67 814 2168 530361670 530360358 0.000000e+00 929.0
5 TraesCS7D01G427300 chr7D 89.094 651 37 16 2448 3084 548065231 548064601 0.000000e+00 778.0
6 TraesCS7D01G427300 chr7D 87.633 566 46 13 80 622 548067528 548066964 1.210000e-178 636.0
7 TraesCS7D01G427300 chr7D 94.431 413 22 1 1 412 548550280 548550692 4.340000e-178 634.0
8 TraesCS7D01G427300 chr7D 88.672 512 47 9 2581 3085 530429134 530428627 5.650000e-172 614.0
9 TraesCS7D01G427300 chr7D 88.596 456 44 5 2637 3085 530358128 530357674 5.820000e-152 547.0
10 TraesCS7D01G427300 chr7D 90.909 407 35 2 4 409 530431680 530431275 2.090000e-151 545.0
11 TraesCS7D01G427300 chr7D 90.968 310 15 7 2145 2448 548065612 548065310 3.700000e-109 405.0
12 TraesCS7D01G427300 chr7D 92.884 267 11 4 2197 2462 588776446 588776705 6.240000e-102 381.0
13 TraesCS7D01G427300 chr7D 91.760 267 14 3 2197 2462 595751354 595751095 6.290000e-97 364.0
14 TraesCS7D01G427300 chr7D 85.714 308 22 5 413 699 548550728 548551034 3.860000e-79 305.0
15 TraesCS7D01G427300 chr7D 87.288 236 25 4 2581 2813 573970868 573971101 6.560000e-67 265.0
16 TraesCS7D01G427300 chr7D 87.288 236 25 4 2581 2813 574248496 574248729 6.560000e-67 265.0
17 TraesCS7D01G427300 chr7D 79.419 413 46 19 406 787 530431246 530430842 3.950000e-64 255.0
18 TraesCS7D01G427300 chr7D 96.154 52 2 0 767 818 548560661 548560712 5.480000e-13 86.1
19 TraesCS7D01G427300 chr7D 100.000 40 0 0 2448 2487 530358255 530358216 1.190000e-09 75.0
20 TraesCS7D01G427300 chr7A 86.350 1707 111 55 814 2462 630671605 630673247 0.000000e+00 1749.0
21 TraesCS7D01G427300 chr7A 87.060 1391 105 26 814 2176 632265762 632267105 0.000000e+00 1502.0
22 TraesCS7D01G427300 chr7A 85.979 1405 73 40 814 2176 631652466 631651144 0.000000e+00 1389.0
23 TraesCS7D01G427300 chr7A 85.172 1423 91 37 522 1867 617552300 617550921 0.000000e+00 1349.0
24 TraesCS7D01G427300 chr7A 89.086 1072 56 20 814 1846 632188023 632189072 0.000000e+00 1275.0
25 TraesCS7D01G427300 chr7A 90.969 753 48 9 892 1630 631872469 631871723 0.000000e+00 996.0
26 TraesCS7D01G427300 chr7A 88.164 828 55 15 1624 2433 631849533 631848731 0.000000e+00 946.0
27 TraesCS7D01G427300 chr7A 91.486 646 31 12 2448 3085 630673312 630673941 0.000000e+00 867.0
28 TraesCS7D01G427300 chr7A 84.284 719 47 17 897 1590 663750794 663750117 2.590000e-180 641.0
29 TraesCS7D01G427300 chr7A 90.191 418 33 4 1 411 630670709 630671125 3.500000e-149 538.0
30 TraesCS7D01G427300 chr7A 87.061 456 51 5 2637 3085 630623162 630623616 2.740000e-140 508.0
31 TraesCS7D01G427300 chr7A 88.000 425 36 7 1 411 632187097 632187520 3.580000e-134 488.0
32 TraesCS7D01G427300 chr7A 89.119 386 14 9 1961 2342 632190123 632190484 3.630000e-124 455.0
33 TraesCS7D01G427300 chr7A 80.144 418 44 17 407 792 631652940 631652530 3.030000e-70 276.0
34 TraesCS7D01G427300 chr7A 79.677 433 35 17 406 785 625674724 625675156 2.360000e-66 263.0
35 TraesCS7D01G427300 chr7A 80.315 381 47 21 420 787 632187573 632187938 2.360000e-66 263.0
36 TraesCS7D01G427300 chr7A 79.108 426 39 12 406 784 625641951 625642373 6.610000e-62 248.0
37 TraesCS7D01G427300 chr7A 95.035 141 7 0 647 787 631878076 631877936 4.000000e-54 222.0
38 TraesCS7D01G427300 chr7A 90.141 71 7 0 1 71 631878171 631878101 3.280000e-15 93.5
39 TraesCS7D01G427300 chr7A 96.154 52 2 0 767 818 632187958 632188009 5.480000e-13 86.1
40 TraesCS7D01G427300 chr7A 100.000 43 0 0 522 564 632265492 632265534 2.550000e-11 80.5
41 TraesCS7D01G427300 chr7A 97.436 39 1 0 2447 2485 617549802 617549764 1.990000e-07 67.6
42 TraesCS7D01G427300 chr7B 83.960 1808 129 61 407 2149 591565667 591567378 0.000000e+00 1583.0
43 TraesCS7D01G427300 chr7B 86.703 1286 75 35 814 2061 591056988 591055761 0.000000e+00 1339.0
44 TraesCS7D01G427300 chr7B 87.294 1212 71 36 814 1999 591684308 591685462 0.000000e+00 1308.0
45 TraesCS7D01G427300 chr7B 84.729 1290 83 57 814 2061 569481689 569480472 0.000000e+00 1186.0
46 TraesCS7D01G427300 chr7B 87.512 1033 56 23 814 1815 591599791 591600781 0.000000e+00 1125.0
47 TraesCS7D01G427300 chr7B 82.798 1401 102 70 814 2176 569439813 569438514 0.000000e+00 1123.0
48 TraesCS7D01G427300 chr7B 84.897 1066 76 25 816 1825 633001034 633002070 0.000000e+00 998.0
49 TraesCS7D01G427300 chr7B 80.845 1420 141 61 816 2168 632800650 632799295 0.000000e+00 994.0
50 TraesCS7D01G427300 chr7B 93.425 654 20 6 32 662 591057676 591057023 0.000000e+00 948.0
51 TraesCS7D01G427300 chr7B 90.081 494 42 5 2581 3070 569479818 569479328 4.340000e-178 634.0
52 TraesCS7D01G427300 chr7B 90.083 484 40 6 2581 3059 591055113 591054633 3.380000e-174 621.0
53 TraesCS7D01G427300 chr7B 87.719 513 37 13 2581 3085 569436957 569436463 2.670000e-160 575.0
54 TraesCS7D01G427300 chr7B 90.215 419 31 7 1 411 591565218 591565634 3.500000e-149 538.0
55 TraesCS7D01G427300 chr7B 90.598 351 27 3 57 401 569440743 569440393 7.790000e-126 460.0
56 TraesCS7D01G427300 chr7B 83.540 322 21 14 406 695 569440348 569440027 3.920000e-69 272.0
57 TraesCS7D01G427300 chr7B 93.548 124 5 2 2448 2568 569480084 569479961 6.800000e-42 182.0
58 TraesCS7D01G427300 chr7B 82.682 179 11 3 406 564 569482126 569481948 1.150000e-29 141.0
59 TraesCS7D01G427300 chr7B 79.703 202 25 8 1912 2107 260131925 260132116 6.940000e-27 132.0
60 TraesCS7D01G427300 chr7B 92.391 92 7 0 697 788 587615122 587615213 6.940000e-27 132.0
61 TraesCS7D01G427300 chr7B 93.182 88 6 0 697 784 587266841 587266928 2.500000e-26 130.0
62 TraesCS7D01G427300 chr7B 91.304 92 8 0 693 784 587503692 587503783 3.230000e-25 126.0
63 TraesCS7D01G427300 chrUn 84.591 1603 103 52 407 1949 355335751 355334233 0.000000e+00 1459.0
64 TraesCS7D01G427300 chrUn 86.217 1393 93 42 814 2176 337590868 337589545 0.000000e+00 1417.0
65 TraesCS7D01G427300 chrUn 90.215 419 31 7 1 411 355336200 355335784 3.500000e-149 538.0
66 TraesCS7D01G427300 chrUn 91.760 267 14 3 2197 2462 70734957 70735216 6.290000e-97 364.0
67 TraesCS7D01G427300 chr4A 85.779 1097 79 27 816 1879 141908840 141907788 0.000000e+00 1090.0
68 TraesCS7D01G427300 chr4A 82.704 636 68 19 1523 2149 141903806 141903204 7.580000e-146 527.0
69 TraesCS7D01G427300 chr4A 82.663 398 23 17 407 787 141909269 141908901 8.310000e-81 311.0
70 TraesCS7D01G427300 chr6A 91.760 267 14 4 2197 2462 455872651 455872392 6.290000e-97 364.0
71 TraesCS7D01G427300 chr5D 91.760 267 13 5 2197 2462 86777733 86777475 2.260000e-96 363.0
72 TraesCS7D01G427300 chr3D 93.776 241 14 1 2223 2462 220218891 220218651 8.130000e-96 361.0
73 TraesCS7D01G427300 chr4B 90.977 266 15 4 2197 2462 158048941 158048685 1.760000e-92 350.0
74 TraesCS7D01G427300 chr1D 80.505 436 32 18 406 788 110904941 110905376 5.030000e-73 285.0
75 TraesCS7D01G427300 chr6B 79.529 425 39 15 406 784 694680746 694681168 3.050000e-65 259.0
76 TraesCS7D01G427300 chr1B 77.419 310 37 12 1798 2101 550546500 550546782 1.480000e-33 154.0
77 TraesCS7D01G427300 chr2B 77.070 314 38 16 1801 2107 107756076 107755790 1.920000e-32 150.0
78 TraesCS7D01G427300 chr3B 76.677 313 40 11 1801 2107 289983836 289984121 3.210000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G427300 chr7D 548324104 548327188 3084 False 5698.000000 5698 100.000000 1 3085 1 chr7D.!!$F1 3084
1 TraesCS7D01G427300 chr7D 548064601 548067528 2927 True 840.750000 1544 89.089250 80 3084 4 chr7D.!!$R4 3004
2 TraesCS7D01G427300 chr7D 548560661 548561761 1100 False 766.550000 1447 94.109500 767 1842 2 chr7D.!!$F5 1075
3 TraesCS7D01G427300 chr7D 573968913 573971101 2188 False 635.000000 1005 84.927500 645 2813 2 chr7D.!!$F6 2168
4 TraesCS7D01G427300 chr7D 530357674 530361670 3996 True 517.000000 929 89.641000 814 3085 3 chr7D.!!$R2 2271
5 TraesCS7D01G427300 chr7D 530428627 530431680 3053 True 471.333333 614 86.333333 4 3085 3 chr7D.!!$R3 3081
6 TraesCS7D01G427300 chr7D 548550280 548551034 754 False 469.500000 634 90.072500 1 699 2 chr7D.!!$F4 698
7 TraesCS7D01G427300 chr7A 630670709 630673941 3232 False 1051.333333 1749 89.342333 1 3085 3 chr7A.!!$F4 3084
8 TraesCS7D01G427300 chr7A 631871723 631872469 746 True 996.000000 996 90.969000 892 1630 1 chr7A.!!$R2 738
9 TraesCS7D01G427300 chr7A 631848731 631849533 802 True 946.000000 946 88.164000 1624 2433 1 chr7A.!!$R1 809
10 TraesCS7D01G427300 chr7A 631651144 631652940 1796 True 832.500000 1389 83.061500 407 2176 2 chr7A.!!$R5 1769
11 TraesCS7D01G427300 chr7A 632265492 632267105 1613 False 791.250000 1502 93.530000 522 2176 2 chr7A.!!$F6 1654
12 TraesCS7D01G427300 chr7A 617549764 617552300 2536 True 708.300000 1349 91.304000 522 2485 2 chr7A.!!$R4 1963
13 TraesCS7D01G427300 chr7A 663750117 663750794 677 True 641.000000 641 84.284000 897 1590 1 chr7A.!!$R3 693
14 TraesCS7D01G427300 chr7A 632187097 632190484 3387 False 513.420000 1275 88.534800 1 2342 5 chr7A.!!$F5 2341
15 TraesCS7D01G427300 chr7B 591684308 591685462 1154 False 1308.000000 1308 87.294000 814 1999 1 chr7B.!!$F6 1185
16 TraesCS7D01G427300 chr7B 591599791 591600781 990 False 1125.000000 1125 87.512000 814 1815 1 chr7B.!!$F5 1001
17 TraesCS7D01G427300 chr7B 591565218 591567378 2160 False 1060.500000 1583 87.087500 1 2149 2 chr7B.!!$F8 2148
18 TraesCS7D01G427300 chr7B 633001034 633002070 1036 False 998.000000 998 84.897000 816 1825 1 chr7B.!!$F7 1009
19 TraesCS7D01G427300 chr7B 632799295 632800650 1355 True 994.000000 994 80.845000 816 2168 1 chr7B.!!$R1 1352
20 TraesCS7D01G427300 chr7B 591054633 591057676 3043 True 969.333333 1339 90.070333 32 3059 3 chr7B.!!$R4 3027
21 TraesCS7D01G427300 chr7B 569436463 569440743 4280 True 607.500000 1123 86.163750 57 3085 4 chr7B.!!$R2 3028
22 TraesCS7D01G427300 chr7B 569479328 569482126 2798 True 535.750000 1186 87.760000 406 3070 4 chr7B.!!$R3 2664
23 TraesCS7D01G427300 chrUn 337589545 337590868 1323 True 1417.000000 1417 86.217000 814 2176 1 chrUn.!!$R1 1362
24 TraesCS7D01G427300 chrUn 355334233 355336200 1967 True 998.500000 1459 87.403000 1 1949 2 chrUn.!!$R2 1948
25 TraesCS7D01G427300 chr4A 141903204 141909269 6065 True 642.666667 1090 83.715333 407 2149 3 chr4A.!!$R1 1742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 302 2.698274 TGGCGCTCACTATGGAAATAGA 59.302 45.455 7.64 0.0 0.0 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 8142 1.270518 GCCTCTGCAAGTCTGAACTCA 60.271 52.381 0.0 0.0 33.48 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
277 291 4.664677 GGTGTCGTGGCGCTCACT 62.665 66.667 21.36 0.00 43.94 3.41
288 302 2.698274 TGGCGCTCACTATGGAAATAGA 59.302 45.455 7.64 0.00 0.00 1.98
1555 2020 1.945354 GCGACCTCCCAAGATCGTCA 61.945 60.000 0.00 0.00 36.93 4.35
1599 2064 3.324268 TGGCTGAAATCATCAAAAAGGCA 59.676 39.130 0.00 0.00 37.67 4.75
1709 2174 1.745489 GTTACCAGGAAGCAGCGGG 60.745 63.158 0.00 0.00 0.00 6.13
1829 2326 2.546321 GACGCAGCTTCACGTGTG 59.454 61.111 16.51 7.51 43.71 3.82
1863 6727 4.278975 AGAAGACAGTTGATCCAGAACC 57.721 45.455 0.00 0.00 0.00 3.62
1867 6736 3.392616 AGACAGTTGATCCAGAACCAGTT 59.607 43.478 0.00 0.00 0.00 3.16
1976 7837 1.154016 GCAGTTGCTCGTAGCTCGA 60.154 57.895 0.00 0.00 46.83 4.04
2176 8125 7.846644 TTTGCAATTTTGAGTTTCTCATGTT 57.153 28.000 0.00 0.00 40.39 2.71
2178 8127 6.808829 TGCAATTTTGAGTTTCTCATGTTCT 58.191 32.000 0.24 0.00 40.39 3.01
2179 8128 6.698329 TGCAATTTTGAGTTTCTCATGTTCTG 59.302 34.615 0.24 0.00 40.39 3.02
2180 8129 6.919662 GCAATTTTGAGTTTCTCATGTTCTGA 59.080 34.615 0.24 0.00 40.39 3.27
2181 8130 7.436080 GCAATTTTGAGTTTCTCATGTTCTGAA 59.564 33.333 0.24 0.00 40.39 3.02
2185 8134 9.874205 TTTTGAGTTTCTCATGTTCTGAATTTT 57.126 25.926 0.24 0.00 40.39 1.82
2229 8210 3.647771 GCCGGGGTCTGGGTTCTT 61.648 66.667 2.18 0.00 0.00 2.52
2354 8342 4.613944 ACATATGTACGACATAACCGTGG 58.386 43.478 6.56 0.00 43.50 4.94
2398 8386 6.545666 TGAATCTTTTCTGAGGTTTGCAAGTA 59.454 34.615 0.00 0.00 32.78 2.24
2528 11890 2.274542 ACAGGTGTACATGATTCCCCA 58.725 47.619 0.00 0.00 0.00 4.96
2538 11900 8.514594 GTGTACATGATTCCCCATTTATACATG 58.485 37.037 0.00 0.00 39.42 3.21
2540 11902 5.481473 ACATGATTCCCCATTTATACATGGC 59.519 40.000 11.82 0.02 42.39 4.40
2551 11913 0.107897 ATACATGGCGTGGCGAGAAA 60.108 50.000 12.05 0.00 0.00 2.52
2556 11918 2.470286 GCGTGGCGAGAAAGTTCG 59.530 61.111 0.00 0.00 43.23 3.95
2565 11927 2.839474 CGAGAAAGTTCGCATTCCAAC 58.161 47.619 0.00 0.00 33.39 3.77
2583 11945 3.627577 CCAACCCCTGATTCAGTATTTCG 59.372 47.826 12.54 0.00 0.00 3.46
2599 11961 2.971660 TTCGGTTCATATCCGCAGAA 57.028 45.000 0.00 0.00 46.49 3.02
2668 12042 4.394712 GACCCCCACGCACCTCTG 62.395 72.222 0.00 0.00 0.00 3.35
2671 12045 4.394712 CCCCACGCACCTCTGTCC 62.395 72.222 0.00 0.00 0.00 4.02
2693 12067 2.706890 TCCTTTCTATCACCAAACGGC 58.293 47.619 0.00 0.00 0.00 5.68
2725 12099 3.305964 TGAACTTCAAACTAGAGACGCG 58.694 45.455 3.53 3.53 0.00 6.01
2754 12130 4.577693 CCACCATAATGTTGAGTGATGGAG 59.422 45.833 6.22 0.00 39.61 3.86
2830 12211 5.636965 TGACAAGTTTGTGGACAAAAATGTG 59.363 36.000 20.38 12.79 46.08 3.21
2872 12254 3.925453 TGCGTCTACTTGCATCCAA 57.075 47.368 0.00 0.00 35.90 3.53
3070 12461 5.596361 TCAAAAGTGATAAAGCAAAGGACCA 59.404 36.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
277 291 3.572642 TCTCGGGCTGTCTATTTCCATA 58.427 45.455 0.00 0.00 0.00 2.74
288 302 2.603021 AGATATGTGATCTCGGGCTGT 58.397 47.619 0.00 0.00 0.00 4.40
663 823 4.410400 CTCGGGAAGGGCGGCTTT 62.410 66.667 5.89 5.89 0.00 3.51
1096 1522 4.812476 CTCGATGGCGGCGTCCAA 62.812 66.667 23.86 12.34 39.96 3.53
1303 1732 1.664965 GCACAGACTCGGCGAGTTT 60.665 57.895 39.20 32.35 43.53 2.66
1567 2032 3.359033 TGATTTCAGCCATCTTCTTGGG 58.641 45.455 0.00 0.00 37.24 4.12
1829 2326 3.257127 ACTGTCTTCTTGACCAGAGCTAC 59.743 47.826 0.00 0.00 44.75 3.58
1863 6727 5.007724 GTGACCTAAAAAGTGACCAGAACTG 59.992 44.000 0.00 0.00 0.00 3.16
1867 6736 5.367945 AAGTGACCTAAAAAGTGACCAGA 57.632 39.130 0.00 0.00 0.00 3.86
1976 7837 3.367932 CGATCACGTACAGAACATGCTTT 59.632 43.478 0.00 0.00 34.56 3.51
2016 7895 9.612620 AGATTTTTAACACTAAATCTCGCTTTG 57.387 29.630 6.93 0.00 43.89 2.77
2184 8133 9.283768 TCTGCAAGTCTGAACTCAAAATTATAA 57.716 29.630 0.00 0.00 33.48 0.98
2185 8134 8.846943 TCTGCAAGTCTGAACTCAAAATTATA 57.153 30.769 0.00 0.00 33.48 0.98
2186 8135 7.094463 CCTCTGCAAGTCTGAACTCAAAATTAT 60.094 37.037 0.00 0.00 33.48 1.28
2187 8136 6.205464 CCTCTGCAAGTCTGAACTCAAAATTA 59.795 38.462 0.00 0.00 33.48 1.40
2188 8137 5.009410 CCTCTGCAAGTCTGAACTCAAAATT 59.991 40.000 0.00 0.00 33.48 1.82
2189 8138 4.518211 CCTCTGCAAGTCTGAACTCAAAAT 59.482 41.667 0.00 0.00 33.48 1.82
2191 8140 3.470709 CCTCTGCAAGTCTGAACTCAAA 58.529 45.455 0.00 0.00 33.48 2.69
2192 8141 2.808202 GCCTCTGCAAGTCTGAACTCAA 60.808 50.000 0.00 0.00 33.48 3.02
2193 8142 1.270518 GCCTCTGCAAGTCTGAACTCA 60.271 52.381 0.00 0.00 33.48 3.41
2222 8203 5.509716 TTTTCGAAAAAGAGGAAGAACCC 57.490 39.130 20.56 0.00 40.05 4.11
2528 11890 2.143122 CTCGCCACGCCATGTATAAAT 58.857 47.619 0.00 0.00 0.00 1.40
2538 11900 2.861006 GAACTTTCTCGCCACGCC 59.139 61.111 0.00 0.00 0.00 5.68
2551 11913 0.609131 CAGGGGTTGGAATGCGAACT 60.609 55.000 0.00 0.00 33.76 3.01
2556 11918 1.753073 CTGAATCAGGGGTTGGAATGC 59.247 52.381 1.53 0.00 0.00 3.56
2565 11927 3.560636 ACCGAAATACTGAATCAGGGG 57.439 47.619 15.38 7.94 35.51 4.79
2583 11945 3.531538 TCTTGTTCTGCGGATATGAACC 58.468 45.455 0.00 0.00 39.24 3.62
2599 11961 2.632028 AGTGTGATGACTGCTCTCTTGT 59.368 45.455 0.00 0.00 0.00 3.16
2668 12042 4.332819 CGTTTGGTGATAGAAAGGATGGAC 59.667 45.833 0.00 0.00 0.00 4.02
2671 12045 3.065371 GCCGTTTGGTGATAGAAAGGATG 59.935 47.826 0.00 0.00 37.67 3.51
2693 12067 2.107950 TGAAGTTCAGGTATTGCGGG 57.892 50.000 0.08 0.00 0.00 6.13
2830 12211 2.012673 ACTCGGCAATTCAGATTCTGC 58.987 47.619 8.89 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.