Multiple sequence alignment - TraesCS7D01G427000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G427000 chr7D 100.000 5023 0 0 1 5023 548206238 548201216 0.000000e+00 9276
1 TraesCS7D01G427000 chr7D 92.381 105 8 0 4099 4203 190163118 190163222 3.130000e-32 150
2 TraesCS7D01G427000 chr7A 95.960 4381 101 20 682 5023 631978457 631974114 0.000000e+00 7040
3 TraesCS7D01G427000 chr7A 92.513 187 10 3 176 358 631978722 631978536 1.070000e-66 265
4 TraesCS7D01G427000 chr7A 91.954 174 12 2 1 173 10532349 10532521 5.020000e-60 243
5 TraesCS7D01G427000 chr7B 96.605 3446 86 14 682 4103 591391462 591388024 0.000000e+00 5686
6 TraesCS7D01G427000 chr7B 92.966 853 38 2 4191 5023 591388031 591387181 0.000000e+00 1223
7 TraesCS7D01G427000 chr7B 85.375 253 29 7 382 632 591452289 591452043 6.450000e-64 255
8 TraesCS7D01G427000 chr7B 92.308 104 8 0 4100 4203 143328201 143328304 1.130000e-31 148
9 TraesCS7D01G427000 chr4B 88.520 2047 233 2 1997 4042 636982762 636980717 0.000000e+00 2477
10 TraesCS7D01G427000 chr4B 88.221 2046 239 2 1997 4042 636971522 636969479 0.000000e+00 2442
11 TraesCS7D01G427000 chr4B 87.136 653 81 2 1241 1890 636985426 636984774 0.000000e+00 737
12 TraesCS7D01G427000 chr4B 93.923 181 8 3 1 180 14623177 14622999 2.300000e-68 270
13 TraesCS7D01G427000 chr4B 80.857 350 54 10 4527 4868 636980318 636979974 3.860000e-66 263
14 TraesCS7D01G427000 chr4B 90.449 178 15 2 1 177 14623968 14624144 3.020000e-57 233
15 TraesCS7D01G427000 chr5B 92.262 168 11 2 7 173 481955759 481955593 2.340000e-58 237
16 TraesCS7D01G427000 chr5B 91.011 178 13 3 3 179 597215913 597215738 2.340000e-58 237
17 TraesCS7D01G427000 chr5B 89.080 174 17 2 1 173 600128073 600127901 1.100000e-51 215
18 TraesCS7D01G427000 chr5B 90.741 108 10 0 4099 4206 269976745 269976852 1.460000e-30 145
19 TraesCS7D01G427000 chr3D 91.329 173 13 2 7 178 484302455 484302284 8.410000e-58 235
20 TraesCS7D01G427000 chr1D 90.805 174 14 2 1 173 386751795 386751967 1.090000e-56 231
21 TraesCS7D01G427000 chrUn 89.080 174 17 2 1 173 85061123 85061295 1.100000e-51 215
22 TraesCS7D01G427000 chr1A 83.784 185 16 3 1100 1284 558091734 558091904 4.020000e-36 163
23 TraesCS7D01G427000 chr1A 92.381 105 8 0 4098 4202 474641775 474641671 3.130000e-32 150
24 TraesCS7D01G427000 chr2A 94.845 97 5 0 4100 4196 68155920 68155824 8.710000e-33 152
25 TraesCS7D01G427000 chr2A 92.381 105 7 1 4100 4204 660286775 660286878 1.130000e-31 148
26 TraesCS7D01G427000 chr2D 93.939 99 6 0 4100 4198 317345636 317345734 3.130000e-32 150
27 TraesCS7D01G427000 chr4D 89.565 115 9 3 4099 4212 12354795 12354683 5.240000e-30 143
28 TraesCS7D01G427000 chr3B 86.260 131 15 3 4069 4197 119469138 119469009 6.780000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G427000 chr7D 548201216 548206238 5022 True 9276.0 9276 100.000000 1 5023 1 chr7D.!!$R1 5022
1 TraesCS7D01G427000 chr7A 631974114 631978722 4608 True 3652.5 7040 94.236500 176 5023 2 chr7A.!!$R1 4847
2 TraesCS7D01G427000 chr7B 591387181 591391462 4281 True 3454.5 5686 94.785500 682 5023 2 chr7B.!!$R2 4341
3 TraesCS7D01G427000 chr4B 636969479 636971522 2043 True 2442.0 2442 88.221000 1997 4042 1 chr4B.!!$R2 2045
4 TraesCS7D01G427000 chr4B 636979974 636985426 5452 True 1159.0 2477 85.504333 1241 4868 3 chr4B.!!$R3 3627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 453 0.034186 AGGAATCCGATTTGGCTGCA 60.034 50.000 0.5 0.0 37.80 4.41 F
454 459 0.101759 CCGATTTGGCTGCAATGGAG 59.898 55.000 0.5 0.0 0.00 3.86 F
616 621 0.179140 GGACGGTGCGGTTCGTATAA 60.179 55.000 0.0 0.0 39.88 0.98 F
618 623 0.527565 ACGGTGCGGTTCGTATAAGT 59.472 50.000 0.0 0.0 37.88 2.24 F
622 627 1.061566 GTGCGGTTCGTATAAGTTGGC 59.938 52.381 0.0 0.0 0.00 4.52 F
623 628 1.337917 TGCGGTTCGTATAAGTTGGCA 60.338 47.619 0.0 0.0 0.00 4.92 F
634 639 1.463553 AAGTTGGCAAAAGGGCTCCG 61.464 55.000 0.0 0.0 43.83 4.63 F
1375 1412 1.699656 CTTCTCCATGTTCGGCTGCG 61.700 60.000 0.0 0.0 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1893 3733 1.194781 ATAGGCCGCCGATCAGGAAT 61.195 55.000 3.05 0.00 45.00 3.01 R
2377 4322 1.362355 GAACCAAACCAGTTGCCGG 59.638 57.895 0.00 0.00 35.74 6.13 R
2562 4507 2.323968 TAGTTATCAGCGCCATTGCA 57.676 45.000 2.29 0.00 37.32 4.08 R
2664 4609 7.370383 TCATTTCAAGTAACCTGAAAGCATTC 58.630 34.615 7.27 0.00 35.41 2.67 R
2904 4849 2.741517 CGTGTATGAATCTGGTGTGCAA 59.258 45.455 0.00 0.00 0.00 4.08 R
3313 5258 0.666913 GGCTCACATGATGCATCCAC 59.333 55.000 23.67 0.06 0.00 4.02 R
3408 5353 1.621317 TCTACGAAGTTCCACATGCCA 59.379 47.619 0.00 0.00 37.78 4.92 R
4103 6173 0.916809 ACCTAATTTGGGACGGAGGG 59.083 55.000 10.77 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.807226 GGTTCATTTAGGTGCGGGC 59.193 57.895 0.00 0.00 0.00 6.13
19 20 1.663379 GGTTCATTTAGGTGCGGGCC 61.663 60.000 0.00 0.00 0.00 5.80
20 21 1.379309 TTCATTTAGGTGCGGGCCC 60.379 57.895 13.57 13.57 0.00 5.80
21 22 3.209097 CATTTAGGTGCGGGCCCG 61.209 66.667 40.26 40.26 43.09 6.13
31 32 3.151710 CGGGCCCGACCTGTCATA 61.152 66.667 41.82 0.00 40.35 2.15
32 33 2.727392 CGGGCCCGACCTGTCATAA 61.727 63.158 41.82 0.00 40.35 1.90
33 34 1.605453 GGGCCCGACCTGTCATAAA 59.395 57.895 5.69 0.00 39.10 1.40
34 35 0.182775 GGGCCCGACCTGTCATAAAT 59.817 55.000 5.69 0.00 39.10 1.40
35 36 1.418637 GGGCCCGACCTGTCATAAATA 59.581 52.381 5.69 0.00 39.10 1.40
36 37 2.550208 GGGCCCGACCTGTCATAAATAG 60.550 54.545 5.69 0.00 39.10 1.73
37 38 2.550208 GGCCCGACCTGTCATAAATAGG 60.550 54.545 0.00 0.00 41.90 2.57
61 62 9.602568 AGGTTTTATTTTTAAACAACGGTCATT 57.397 25.926 0.00 0.00 37.25 2.57
65 66 6.852858 ATTTTTAAACAACGGTCATTTGGG 57.147 33.333 0.00 0.00 0.00 4.12
66 67 5.340439 TTTTAAACAACGGTCATTTGGGT 57.660 34.783 0.00 0.00 0.00 4.51
67 68 5.340439 TTTAAACAACGGTCATTTGGGTT 57.660 34.783 0.00 0.00 0.00 4.11
68 69 3.897141 AAACAACGGTCATTTGGGTTT 57.103 38.095 0.00 0.00 0.00 3.27
69 70 3.897141 AACAACGGTCATTTGGGTTTT 57.103 38.095 0.00 0.00 0.00 2.43
70 71 3.897141 ACAACGGTCATTTGGGTTTTT 57.103 38.095 0.00 0.00 0.00 1.94
87 88 3.928343 TTTTTGAAACAGCCGACCG 57.072 47.368 0.00 0.00 0.00 4.79
88 89 0.248702 TTTTTGAAACAGCCGACCGC 60.249 50.000 0.00 0.00 37.98 5.68
89 90 2.381665 TTTTGAAACAGCCGACCGCG 62.382 55.000 0.00 0.00 44.76 6.46
99 100 3.834373 CGACCGCGCGTTTGGTAG 61.834 66.667 29.95 15.38 38.99 3.18
100 101 2.735857 GACCGCGCGTTTGGTAGT 60.736 61.111 29.95 17.38 38.99 2.73
101 102 2.280321 ACCGCGCGTTTGGTAGTT 60.280 55.556 29.95 0.00 36.50 2.24
102 103 1.834458 GACCGCGCGTTTGGTAGTTT 61.834 55.000 29.95 0.00 38.99 2.66
103 104 1.280444 CCGCGCGTTTGGTAGTTTT 59.720 52.632 29.95 0.00 0.00 2.43
104 105 0.317186 CCGCGCGTTTGGTAGTTTTT 60.317 50.000 29.95 0.00 0.00 1.94
147 148 2.752075 TTTTTGGAACCCTAACCCGT 57.248 45.000 0.00 0.00 0.00 5.28
148 149 3.872459 TTTTTGGAACCCTAACCCGTA 57.128 42.857 0.00 0.00 0.00 4.02
149 150 3.872459 TTTTGGAACCCTAACCCGTAA 57.128 42.857 0.00 0.00 0.00 3.18
150 151 3.872459 TTTGGAACCCTAACCCGTAAA 57.128 42.857 0.00 0.00 0.00 2.01
151 152 3.421919 TTGGAACCCTAACCCGTAAAG 57.578 47.619 0.00 0.00 0.00 1.85
152 153 2.337849 TGGAACCCTAACCCGTAAAGT 58.662 47.619 0.00 0.00 0.00 2.66
153 154 3.515562 TGGAACCCTAACCCGTAAAGTA 58.484 45.455 0.00 0.00 0.00 2.24
154 155 3.515104 TGGAACCCTAACCCGTAAAGTAG 59.485 47.826 0.00 0.00 0.00 2.57
155 156 3.515502 GGAACCCTAACCCGTAAAGTAGT 59.484 47.826 0.00 0.00 0.00 2.73
156 157 4.709886 GGAACCCTAACCCGTAAAGTAGTA 59.290 45.833 0.00 0.00 0.00 1.82
157 158 5.163509 GGAACCCTAACCCGTAAAGTAGTAG 60.164 48.000 0.00 0.00 0.00 2.57
158 159 4.935578 ACCCTAACCCGTAAAGTAGTAGT 58.064 43.478 0.00 0.00 0.00 2.73
159 160 5.333581 ACCCTAACCCGTAAAGTAGTAGTT 58.666 41.667 0.00 0.00 0.00 2.24
160 161 5.780282 ACCCTAACCCGTAAAGTAGTAGTTT 59.220 40.000 8.04 8.04 0.00 2.66
161 162 6.270000 ACCCTAACCCGTAAAGTAGTAGTTTT 59.730 38.462 8.25 0.00 0.00 2.43
162 163 7.453439 ACCCTAACCCGTAAAGTAGTAGTTTTA 59.547 37.037 8.25 0.00 0.00 1.52
163 164 8.478066 CCCTAACCCGTAAAGTAGTAGTTTTAT 58.522 37.037 8.25 0.00 0.00 1.40
164 165 9.305925 CCTAACCCGTAAAGTAGTAGTTTTATG 57.694 37.037 8.25 4.38 0.00 1.90
165 166 7.601073 AACCCGTAAAGTAGTAGTTTTATGC 57.399 36.000 8.25 0.00 0.00 3.14
166 167 6.939622 ACCCGTAAAGTAGTAGTTTTATGCT 58.060 36.000 8.25 0.00 0.00 3.79
167 168 8.066612 ACCCGTAAAGTAGTAGTTTTATGCTA 57.933 34.615 8.25 0.00 0.00 3.49
168 169 8.699130 ACCCGTAAAGTAGTAGTTTTATGCTAT 58.301 33.333 8.25 0.00 0.00 2.97
169 170 9.538508 CCCGTAAAGTAGTAGTTTTATGCTATT 57.461 33.333 8.25 0.00 0.00 1.73
187 188 1.454201 TTTACGCGATTCCATTGCCA 58.546 45.000 15.93 0.00 36.27 4.92
189 190 1.674359 TACGCGATTCCATTGCCAAT 58.326 45.000 15.93 0.00 36.27 3.16
190 191 1.674359 ACGCGATTCCATTGCCAATA 58.326 45.000 15.93 0.00 36.27 1.90
191 192 2.229792 ACGCGATTCCATTGCCAATAT 58.770 42.857 15.93 0.00 36.27 1.28
192 193 2.226437 ACGCGATTCCATTGCCAATATC 59.774 45.455 15.93 0.00 36.27 1.63
194 195 3.668757 CGCGATTCCATTGCCAATATCTG 60.669 47.826 0.00 0.00 36.27 2.90
195 196 3.503363 GCGATTCCATTGCCAATATCTGA 59.497 43.478 0.00 0.00 33.42 3.27
220 225 6.820656 ACAGAAGCAATGTGGACTTATTAGAG 59.179 38.462 0.00 0.00 0.00 2.43
247 252 6.884832 TCAGTGGAGTACAGGGTTTATATTG 58.115 40.000 0.00 0.00 0.00 1.90
257 262 7.161715 ACAGGGTTTATATTGATATGGTGGT 57.838 36.000 0.00 0.00 0.00 4.16
287 292 8.999431 CCTATACTAGAGAGTCTCTTGTGATTC 58.001 40.741 33.79 5.05 43.78 2.52
328 333 4.156455 TCTGATAATCCTGCAAACCTCC 57.844 45.455 0.00 0.00 0.00 4.30
340 345 4.264253 TGCAAACCTCCATAATCTGTGAG 58.736 43.478 0.00 0.00 0.00 3.51
355 360 6.875972 ATCTGTGAGGAATTGGTTACTAGT 57.124 37.500 0.00 0.00 0.00 2.57
358 363 8.008513 TCTGTGAGGAATTGGTTACTAGTATC 57.991 38.462 2.79 2.79 0.00 2.24
360 365 5.690857 GTGAGGAATTGGTTACTAGTATCGC 59.309 44.000 2.79 0.00 0.00 4.58
363 368 5.363005 AGGAATTGGTTACTAGTATCGCTGT 59.637 40.000 2.79 0.00 0.00 4.40
364 369 5.462398 GGAATTGGTTACTAGTATCGCTGTG 59.538 44.000 2.79 0.00 0.00 3.66
365 370 3.431922 TGGTTACTAGTATCGCTGTGC 57.568 47.619 2.79 0.00 0.00 4.57
370 375 5.220416 GGTTACTAGTATCGCTGTGCAAAAG 60.220 44.000 2.79 0.00 0.00 2.27
372 377 3.927142 ACTAGTATCGCTGTGCAAAAGTC 59.073 43.478 0.00 0.00 0.00 3.01
377 382 3.223423 TCGCTGTGCAAAAGTCAAAAA 57.777 38.095 0.00 0.00 0.00 1.94
378 383 3.779759 TCGCTGTGCAAAAGTCAAAAAT 58.220 36.364 0.00 0.00 0.00 1.82
379 384 3.796178 TCGCTGTGCAAAAGTCAAAAATC 59.204 39.130 0.00 0.00 0.00 2.17
381 386 4.032672 CGCTGTGCAAAAGTCAAAAATCAA 59.967 37.500 0.00 0.00 0.00 2.57
382 387 5.445673 CGCTGTGCAAAAGTCAAAAATCAAA 60.446 36.000 0.00 0.00 0.00 2.69
385 390 7.164662 GCTGTGCAAAAGTCAAAAATCAAATTC 59.835 33.333 0.00 0.00 0.00 2.17
386 391 8.037382 TGTGCAAAAGTCAAAAATCAAATTCA 57.963 26.923 0.00 0.00 0.00 2.57
387 392 8.675504 TGTGCAAAAGTCAAAAATCAAATTCAT 58.324 25.926 0.00 0.00 0.00 2.57
388 393 8.949953 GTGCAAAAGTCAAAAATCAAATTCATG 58.050 29.630 0.00 0.00 0.00 3.07
389 394 8.675504 TGCAAAAGTCAAAAATCAAATTCATGT 58.324 25.926 0.00 0.00 0.00 3.21
390 395 9.505995 GCAAAAGTCAAAAATCAAATTCATGTT 57.494 25.926 0.00 0.00 0.00 2.71
395 400 8.428063 AGTCAAAAATCAAATTCATGTTACCCA 58.572 29.630 0.00 0.00 0.00 4.51
396 401 8.711457 GTCAAAAATCAAATTCATGTTACCCAG 58.289 33.333 0.00 0.00 0.00 4.45
398 403 9.439500 CAAAAATCAAATTCATGTTACCCAGAT 57.561 29.630 0.00 0.00 0.00 2.90
407 412 9.920946 AATTCATGTTACCCAGATTATACTTGT 57.079 29.630 0.00 0.00 0.00 3.16
410 415 9.826574 TCATGTTACCCAGATTATACTTGTAAC 57.173 33.333 0.00 0.00 36.79 2.50
411 416 9.832445 CATGTTACCCAGATTATACTTGTAACT 57.168 33.333 0.00 0.00 36.96 2.24
416 421 7.172342 ACCCAGATTATACTTGTAACTTTGCA 58.828 34.615 0.00 0.00 0.00 4.08
417 422 7.668052 ACCCAGATTATACTTGTAACTTTGCAA 59.332 33.333 0.00 0.00 0.00 4.08
424 429 4.228912 CTTGTAACTTTGCAAGGAGGTG 57.771 45.455 16.36 0.00 44.04 4.00
426 431 4.425180 TGTAACTTTGCAAGGAGGTGTA 57.575 40.909 16.36 0.00 0.00 2.90
428 433 5.194432 TGTAACTTTGCAAGGAGGTGTAAA 58.806 37.500 16.36 0.00 32.99 2.01
431 436 3.636764 ACTTTGCAAGGAGGTGTAAAAGG 59.363 43.478 16.36 0.00 33.52 3.11
433 438 3.586470 TGCAAGGAGGTGTAAAAGGAA 57.414 42.857 0.00 0.00 0.00 3.36
434 439 4.112634 TGCAAGGAGGTGTAAAAGGAAT 57.887 40.909 0.00 0.00 0.00 3.01
435 440 4.079253 TGCAAGGAGGTGTAAAAGGAATC 58.921 43.478 0.00 0.00 0.00 2.52
436 441 3.444034 GCAAGGAGGTGTAAAAGGAATCC 59.556 47.826 0.00 0.00 0.00 3.01
437 442 3.629142 AGGAGGTGTAAAAGGAATCCG 57.371 47.619 0.00 0.00 0.00 4.18
438 443 3.178865 AGGAGGTGTAAAAGGAATCCGA 58.821 45.455 0.00 0.00 0.00 4.55
439 444 3.780850 AGGAGGTGTAAAAGGAATCCGAT 59.219 43.478 0.00 0.00 0.00 4.18
440 445 4.227527 AGGAGGTGTAAAAGGAATCCGATT 59.772 41.667 0.00 0.00 0.00 3.34
441 446 4.948004 GGAGGTGTAAAAGGAATCCGATTT 59.052 41.667 10.16 10.16 0.00 2.17
442 447 5.163652 GGAGGTGTAAAAGGAATCCGATTTG 60.164 44.000 13.77 0.00 0.00 2.32
443 448 4.705023 AGGTGTAAAAGGAATCCGATTTGG 59.295 41.667 13.77 0.00 40.09 3.28
444 449 4.421058 GTGTAAAAGGAATCCGATTTGGC 58.579 43.478 13.77 8.66 37.80 4.52
445 450 4.157840 GTGTAAAAGGAATCCGATTTGGCT 59.842 41.667 13.77 0.00 37.80 4.75
446 451 3.874392 AAAAGGAATCCGATTTGGCTG 57.126 42.857 5.52 0.00 37.80 4.85
447 452 1.106285 AAGGAATCCGATTTGGCTGC 58.894 50.000 0.00 0.00 37.80 5.25
448 453 0.034186 AGGAATCCGATTTGGCTGCA 60.034 50.000 0.50 0.00 37.80 4.41
449 454 0.817013 GGAATCCGATTTGGCTGCAA 59.183 50.000 0.50 0.00 37.80 4.08
450 455 1.410153 GGAATCCGATTTGGCTGCAAT 59.590 47.619 0.50 0.00 37.80 3.56
451 456 2.466846 GAATCCGATTTGGCTGCAATG 58.533 47.619 0.50 0.00 37.80 2.82
452 457 0.748450 ATCCGATTTGGCTGCAATGG 59.252 50.000 0.50 0.00 37.80 3.16
453 458 0.323269 TCCGATTTGGCTGCAATGGA 60.323 50.000 0.50 1.63 37.80 3.41
454 459 0.101759 CCGATTTGGCTGCAATGGAG 59.898 55.000 0.50 0.00 0.00 3.86
455 460 0.526954 CGATTTGGCTGCAATGGAGC 60.527 55.000 18.67 18.67 35.57 4.70
456 461 0.533491 GATTTGGCTGCAATGGAGCA 59.467 50.000 27.02 11.41 43.35 4.26
457 462 0.978151 ATTTGGCTGCAATGGAGCAA 59.022 45.000 27.02 14.93 45.13 3.91
458 463 0.319083 TTTGGCTGCAATGGAGCAAG 59.681 50.000 27.02 0.00 45.13 4.01
459 464 2.162338 TTGGCTGCAATGGAGCAAGC 62.162 55.000 27.02 11.39 45.13 4.01
460 465 2.642254 GGCTGCAATGGAGCAAGCA 61.642 57.895 27.02 0.00 45.13 3.91
462 467 1.153823 CTGCAATGGAGCAAGCAGC 60.154 57.895 0.00 0.00 46.51 5.25
475 480 2.600867 GCAAGCAGCTCTAACTCTAACG 59.399 50.000 0.00 0.00 41.15 3.18
476 481 3.673594 GCAAGCAGCTCTAACTCTAACGA 60.674 47.826 0.00 0.00 41.15 3.85
477 482 4.677584 CAAGCAGCTCTAACTCTAACGAT 58.322 43.478 0.00 0.00 0.00 3.73
478 483 4.993029 AGCAGCTCTAACTCTAACGATT 57.007 40.909 0.00 0.00 0.00 3.34
479 484 4.927422 AGCAGCTCTAACTCTAACGATTC 58.073 43.478 0.00 0.00 0.00 2.52
480 485 4.045783 GCAGCTCTAACTCTAACGATTCC 58.954 47.826 0.00 0.00 0.00 3.01
481 486 4.612943 CAGCTCTAACTCTAACGATTCCC 58.387 47.826 0.00 0.00 0.00 3.97
482 487 3.315749 AGCTCTAACTCTAACGATTCCCG 59.684 47.826 0.00 0.00 45.44 5.14
483 488 3.314635 GCTCTAACTCTAACGATTCCCGA 59.685 47.826 0.00 0.00 41.76 5.14
484 489 4.201990 GCTCTAACTCTAACGATTCCCGAA 60.202 45.833 0.00 0.00 41.76 4.30
485 490 5.496133 TCTAACTCTAACGATTCCCGAAG 57.504 43.478 0.00 0.00 41.76 3.79
486 491 2.580966 ACTCTAACGATTCCCGAAGC 57.419 50.000 0.00 0.00 41.76 3.86
487 492 1.822990 ACTCTAACGATTCCCGAAGCA 59.177 47.619 0.00 0.00 41.76 3.91
488 493 2.232941 ACTCTAACGATTCCCGAAGCAA 59.767 45.455 0.00 0.00 41.76 3.91
489 494 2.603560 CTCTAACGATTCCCGAAGCAAC 59.396 50.000 0.00 0.00 41.76 4.17
490 495 1.323534 CTAACGATTCCCGAAGCAACG 59.676 52.381 0.00 0.00 41.76 4.10
491 496 1.908066 AACGATTCCCGAAGCAACGC 61.908 55.000 0.00 0.00 41.76 4.84
492 497 2.791927 GATTCCCGAAGCAACGCC 59.208 61.111 0.00 0.00 0.00 5.68
493 498 2.033448 ATTCCCGAAGCAACGCCA 59.967 55.556 0.00 0.00 0.00 5.69
494 499 1.582610 GATTCCCGAAGCAACGCCAA 61.583 55.000 0.00 0.00 0.00 4.52
495 500 1.175983 ATTCCCGAAGCAACGCCAAA 61.176 50.000 0.00 0.00 0.00 3.28
496 501 2.050442 CCCGAAGCAACGCCAAAC 60.050 61.111 0.00 0.00 0.00 2.93
497 502 2.718731 CCGAAGCAACGCCAAACA 59.281 55.556 0.00 0.00 0.00 2.83
498 503 1.657181 CCGAAGCAACGCCAAACAC 60.657 57.895 0.00 0.00 0.00 3.32
499 504 1.063327 CGAAGCAACGCCAAACACA 59.937 52.632 0.00 0.00 0.00 3.72
500 505 0.929824 CGAAGCAACGCCAAACACAG 60.930 55.000 0.00 0.00 0.00 3.66
501 506 0.380378 GAAGCAACGCCAAACACAGA 59.620 50.000 0.00 0.00 0.00 3.41
502 507 0.814457 AAGCAACGCCAAACACAGAA 59.186 45.000 0.00 0.00 0.00 3.02
503 508 0.381801 AGCAACGCCAAACACAGAAG 59.618 50.000 0.00 0.00 0.00 2.85
504 509 1.208642 GCAACGCCAAACACAGAAGC 61.209 55.000 0.00 0.00 0.00 3.86
505 510 0.381801 CAACGCCAAACACAGAAGCT 59.618 50.000 0.00 0.00 0.00 3.74
506 511 0.381801 AACGCCAAACACAGAAGCTG 59.618 50.000 0.00 0.00 37.52 4.24
507 512 1.283793 CGCCAAACACAGAAGCTGG 59.716 57.895 0.00 0.00 35.51 4.85
508 513 1.165907 CGCCAAACACAGAAGCTGGA 61.166 55.000 0.00 0.00 35.51 3.86
509 514 1.251251 GCCAAACACAGAAGCTGGAT 58.749 50.000 0.00 0.00 35.51 3.41
510 515 1.068055 GCCAAACACAGAAGCTGGATG 60.068 52.381 0.00 0.00 35.51 3.51
511 516 2.233271 CCAAACACAGAAGCTGGATGT 58.767 47.619 0.00 0.00 35.51 3.06
512 517 2.624838 CCAAACACAGAAGCTGGATGTT 59.375 45.455 0.00 0.00 33.94 2.71
513 518 3.551454 CCAAACACAGAAGCTGGATGTTG 60.551 47.826 6.66 0.08 33.22 3.33
514 519 2.936919 ACACAGAAGCTGGATGTTGA 57.063 45.000 0.00 0.00 35.51 3.18
515 520 2.498167 ACACAGAAGCTGGATGTTGAC 58.502 47.619 0.00 0.00 35.51 3.18
516 521 1.808945 CACAGAAGCTGGATGTTGACC 59.191 52.381 0.00 0.00 35.51 4.02
517 522 1.421268 ACAGAAGCTGGATGTTGACCA 59.579 47.619 0.00 0.00 35.51 4.02
525 530 3.354948 TGGATGTTGACCAGAATCCTG 57.645 47.619 11.72 0.00 39.51 3.86
526 531 2.644299 TGGATGTTGACCAGAATCCTGT 59.356 45.455 11.72 0.00 39.51 4.00
527 532 3.843619 TGGATGTTGACCAGAATCCTGTA 59.156 43.478 11.72 0.00 39.51 2.74
528 533 4.192317 GGATGTTGACCAGAATCCTGTAC 58.808 47.826 0.00 0.00 38.74 2.90
529 534 3.695830 TGTTGACCAGAATCCTGTACC 57.304 47.619 0.00 0.00 38.74 3.34
530 535 3.248024 TGTTGACCAGAATCCTGTACCT 58.752 45.455 0.00 0.00 38.74 3.08
531 536 3.007940 TGTTGACCAGAATCCTGTACCTG 59.992 47.826 0.00 0.00 38.74 4.00
532 537 3.184382 TGACCAGAATCCTGTACCTGA 57.816 47.619 0.00 0.00 38.74 3.86
533 538 3.516586 TGACCAGAATCCTGTACCTGAA 58.483 45.455 0.00 0.00 38.74 3.02
534 539 3.907474 TGACCAGAATCCTGTACCTGAAA 59.093 43.478 0.00 0.00 38.74 2.69
535 540 4.536090 TGACCAGAATCCTGTACCTGAAAT 59.464 41.667 0.00 0.00 38.74 2.17
536 541 5.104259 ACCAGAATCCTGTACCTGAAATC 57.896 43.478 0.00 0.00 38.74 2.17
537 542 4.122776 CCAGAATCCTGTACCTGAAATCG 58.877 47.826 0.00 0.00 38.74 3.34
538 543 4.122776 CAGAATCCTGTACCTGAAATCGG 58.877 47.826 0.00 0.00 35.70 4.18
539 544 4.979696 CAGAATCCTGTACCTGAAATCGGG 60.980 50.000 6.74 6.74 40.57 5.14
540 545 0.539986 TCCTGTACCTGAAATCGGGC 59.460 55.000 8.22 0.00 46.43 6.13
541 546 0.810031 CCTGTACCTGAAATCGGGCG 60.810 60.000 8.22 0.00 46.43 6.13
542 547 0.810031 CTGTACCTGAAATCGGGCGG 60.810 60.000 8.22 0.00 46.43 6.13
543 548 1.259142 TGTACCTGAAATCGGGCGGA 61.259 55.000 8.22 0.00 46.43 5.54
544 549 0.529992 GTACCTGAAATCGGGCGGAG 60.530 60.000 8.22 0.00 46.43 4.63
545 550 0.685131 TACCTGAAATCGGGCGGAGA 60.685 55.000 8.22 0.00 46.43 3.71
546 551 1.227380 CCTGAAATCGGGCGGAGAG 60.227 63.158 0.20 0.00 35.28 3.20
547 552 1.676678 CCTGAAATCGGGCGGAGAGA 61.677 60.000 0.20 0.00 35.28 3.10
548 553 0.249238 CTGAAATCGGGCGGAGAGAG 60.249 60.000 0.20 0.00 0.00 3.20
549 554 0.683179 TGAAATCGGGCGGAGAGAGA 60.683 55.000 0.20 0.00 0.00 3.10
550 555 0.249114 GAAATCGGGCGGAGAGAGAC 60.249 60.000 0.20 0.00 0.00 3.36
551 556 2.005960 AAATCGGGCGGAGAGAGACG 62.006 60.000 0.20 0.00 0.00 4.18
610 615 2.806621 GTACGGACGGTGCGGTTC 60.807 66.667 25.31 11.48 34.75 3.62
611 616 4.403137 TACGGACGGTGCGGTTCG 62.403 66.667 25.31 8.68 34.75 3.95
613 618 4.403137 CGGACGGTGCGGTTCGTA 62.403 66.667 14.59 0.00 39.88 3.43
614 619 2.182537 GGACGGTGCGGTTCGTAT 59.817 61.111 0.00 0.00 39.88 3.06
615 620 1.433064 GGACGGTGCGGTTCGTATA 59.567 57.895 0.00 0.00 39.88 1.47
616 621 0.179140 GGACGGTGCGGTTCGTATAA 60.179 55.000 0.00 0.00 39.88 0.98
617 622 1.194495 GACGGTGCGGTTCGTATAAG 58.806 55.000 0.00 0.00 39.88 1.73
618 623 0.527565 ACGGTGCGGTTCGTATAAGT 59.472 50.000 0.00 0.00 37.88 2.24
619 624 1.067635 ACGGTGCGGTTCGTATAAGTT 60.068 47.619 0.00 0.00 37.88 2.66
620 625 1.322338 CGGTGCGGTTCGTATAAGTTG 59.678 52.381 0.00 0.00 0.00 3.16
621 626 1.662122 GGTGCGGTTCGTATAAGTTGG 59.338 52.381 0.00 0.00 0.00 3.77
622 627 1.061566 GTGCGGTTCGTATAAGTTGGC 59.938 52.381 0.00 0.00 0.00 4.52
623 628 1.337917 TGCGGTTCGTATAAGTTGGCA 60.338 47.619 0.00 0.00 0.00 4.92
624 629 1.733360 GCGGTTCGTATAAGTTGGCAA 59.267 47.619 0.00 0.00 0.00 4.52
625 630 2.160022 GCGGTTCGTATAAGTTGGCAAA 59.840 45.455 0.00 0.00 0.00 3.68
626 631 3.365164 GCGGTTCGTATAAGTTGGCAAAA 60.365 43.478 0.00 0.00 0.00 2.44
627 632 4.399978 CGGTTCGTATAAGTTGGCAAAAG 58.600 43.478 0.00 0.00 0.00 2.27
628 633 4.670735 CGGTTCGTATAAGTTGGCAAAAGG 60.671 45.833 0.00 0.00 0.00 3.11
629 634 4.380128 GGTTCGTATAAGTTGGCAAAAGGG 60.380 45.833 0.00 0.00 0.00 3.95
630 635 2.750712 TCGTATAAGTTGGCAAAAGGGC 59.249 45.455 0.00 0.00 43.73 5.19
631 636 2.752903 CGTATAAGTTGGCAAAAGGGCT 59.247 45.455 0.00 0.00 43.83 5.19
632 637 3.181500 CGTATAAGTTGGCAAAAGGGCTC 60.181 47.826 0.00 0.00 43.83 4.70
633 638 1.627864 TAAGTTGGCAAAAGGGCTCC 58.372 50.000 0.00 0.00 43.83 4.70
634 639 1.463553 AAGTTGGCAAAAGGGCTCCG 61.464 55.000 0.00 0.00 43.83 4.63
635 640 2.600173 TTGGCAAAAGGGCTCCGG 60.600 61.111 0.00 0.00 43.83 5.14
636 641 3.444818 TTGGCAAAAGGGCTCCGGT 62.445 57.895 0.00 0.00 43.83 5.28
637 642 2.600470 GGCAAAAGGGCTCCGGTT 60.600 61.111 0.00 0.00 39.42 4.44
638 643 2.650778 GCAAAAGGGCTCCGGTTG 59.349 61.111 0.00 0.00 0.00 3.77
639 644 2.650778 CAAAAGGGCTCCGGTTGC 59.349 61.111 0.00 7.56 0.00 4.17
640 645 2.983592 AAAAGGGCTCCGGTTGCG 60.984 61.111 0.00 0.00 0.00 4.85
658 663 3.894947 GAGGGCGACTCGGAGCTC 61.895 72.222 4.71 4.71 36.29 4.09
737 742 2.043115 GGAGAGGGAGTGGGGAATTTTT 59.957 50.000 0.00 0.00 0.00 1.94
856 871 4.351938 CGCCGAACGGACCAGACA 62.352 66.667 17.63 0.00 38.44 3.41
891 909 6.157820 AGTGGATTGGGGAAAAAGAAAGAAAA 59.842 34.615 0.00 0.00 0.00 2.29
1089 1126 3.797353 CCATCCACCTCCACCCCG 61.797 72.222 0.00 0.00 0.00 5.73
1090 1127 3.009115 CATCCACCTCCACCCCGT 61.009 66.667 0.00 0.00 0.00 5.28
1375 1412 1.699656 CTTCTCCATGTTCGGCTGCG 61.700 60.000 0.00 0.00 0.00 5.18
1809 1849 3.828451 CCATTTTGATTCAGGGTCTGTGT 59.172 43.478 0.00 0.00 32.61 3.72
1893 3733 3.504134 CCCCGAATTCACACACATACAAA 59.496 43.478 6.22 0.00 0.00 2.83
1990 3830 2.228822 GGTGTTGCTCCAAGTGTTATGG 59.771 50.000 0.00 0.00 39.41 2.74
2101 4046 3.540617 CACCCGAATGATTGGACATACA 58.459 45.455 0.00 0.00 30.72 2.29
2377 4322 5.622378 CGAAGGAGTTGTTAGCTGAAATTC 58.378 41.667 0.00 0.00 0.00 2.17
2811 4756 7.266905 TGTTAGAAAAGGAATAGCCCTAACT 57.733 36.000 0.00 0.00 37.97 2.24
2815 4760 6.901300 AGAAAAGGAATAGCCCTAACTAAGG 58.099 40.000 0.00 0.00 46.09 2.69
3313 5258 2.229675 TCATACTCTGAAGCGCATGG 57.770 50.000 11.47 0.00 0.00 3.66
3408 5353 5.934402 ATTTCCGTTATGTAGACACCTCT 57.066 39.130 0.00 0.00 0.00 3.69
3424 5369 1.081892 CTCTGGCATGTGGAACTTCG 58.918 55.000 0.00 0.00 38.04 3.79
3475 5420 5.452078 TGAAAGGATGTCAAAACATGGTC 57.548 39.130 0.00 0.00 46.20 4.02
4042 5987 1.714541 TGGTGTGTTTCATTGGCCAT 58.285 45.000 6.09 0.00 0.00 4.40
4112 6182 4.256462 GGAGTACTCCCTCCGTCC 57.744 66.667 28.87 4.17 43.94 4.79
4113 6183 1.455402 GGAGTACTCCCTCCGTCCC 60.455 68.421 28.87 3.11 43.94 4.46
4114 6184 1.305623 GAGTACTCCCTCCGTCCCA 59.694 63.158 12.13 0.00 0.00 4.37
4115 6185 0.324091 GAGTACTCCCTCCGTCCCAA 60.324 60.000 12.13 0.00 0.00 4.12
4116 6186 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
4117 6187 1.201424 GTACTCCCTCCGTCCCAAAT 58.799 55.000 0.00 0.00 0.00 2.32
4118 6188 1.558294 GTACTCCCTCCGTCCCAAATT 59.442 52.381 0.00 0.00 0.00 1.82
4119 6189 1.961133 ACTCCCTCCGTCCCAAATTA 58.039 50.000 0.00 0.00 0.00 1.40
4120 6190 1.838077 ACTCCCTCCGTCCCAAATTAG 59.162 52.381 0.00 0.00 0.00 1.73
4121 6191 1.141053 CTCCCTCCGTCCCAAATTAGG 59.859 57.143 0.00 0.00 0.00 2.69
4122 6192 0.916809 CCCTCCGTCCCAAATTAGGT 59.083 55.000 0.00 0.00 0.00 3.08
4123 6193 1.408266 CCCTCCGTCCCAAATTAGGTG 60.408 57.143 0.00 0.00 0.00 4.00
4124 6194 1.280998 CCTCCGTCCCAAATTAGGTGT 59.719 52.381 0.00 0.00 0.00 4.16
4125 6195 2.629051 CTCCGTCCCAAATTAGGTGTC 58.371 52.381 0.00 0.00 0.00 3.67
4126 6196 2.236395 CTCCGTCCCAAATTAGGTGTCT 59.764 50.000 0.00 0.00 0.00 3.41
4127 6197 2.640826 TCCGTCCCAAATTAGGTGTCTT 59.359 45.455 0.00 0.00 0.00 3.01
4128 6198 3.839490 TCCGTCCCAAATTAGGTGTCTTA 59.161 43.478 0.00 0.00 0.00 2.10
4129 6199 4.286549 TCCGTCCCAAATTAGGTGTCTTAA 59.713 41.667 0.00 0.00 0.00 1.85
4130 6200 4.393990 CCGTCCCAAATTAGGTGTCTTAAC 59.606 45.833 0.00 0.00 0.00 2.01
4131 6201 5.243207 CGTCCCAAATTAGGTGTCTTAACT 58.757 41.667 0.00 0.00 0.00 2.24
4132 6202 5.704053 CGTCCCAAATTAGGTGTCTTAACTT 59.296 40.000 0.00 0.00 0.00 2.66
4133 6203 6.206048 CGTCCCAAATTAGGTGTCTTAACTTT 59.794 38.462 0.00 0.00 0.00 2.66
4134 6204 7.368059 GTCCCAAATTAGGTGTCTTAACTTTG 58.632 38.462 0.00 0.00 0.00 2.77
4135 6205 7.013942 GTCCCAAATTAGGTGTCTTAACTTTGT 59.986 37.037 0.00 0.00 0.00 2.83
4136 6206 8.219178 TCCCAAATTAGGTGTCTTAACTTTGTA 58.781 33.333 0.00 0.00 0.00 2.41
4137 6207 8.294577 CCCAAATTAGGTGTCTTAACTTTGTAC 58.705 37.037 0.00 0.00 0.00 2.90
4138 6208 9.063615 CCAAATTAGGTGTCTTAACTTTGTACT 57.936 33.333 0.00 0.00 0.00 2.73
4173 6243 8.429493 ACAAAGTTGTACTAAGGTTAAGACAC 57.571 34.615 0.00 0.00 40.16 3.67
4174 6244 8.262933 ACAAAGTTGTACTAAGGTTAAGACACT 58.737 33.333 0.00 0.00 40.16 3.55
4175 6245 9.106070 CAAAGTTGTACTAAGGTTAAGACACTT 57.894 33.333 0.00 0.00 0.00 3.16
4182 6252 9.583765 GTACTAAGGTTAAGACACTTATTCTGG 57.416 37.037 0.00 0.00 0.00 3.86
4183 6253 7.621796 ACTAAGGTTAAGACACTTATTCTGGG 58.378 38.462 0.00 0.00 0.00 4.45
4184 6254 6.697641 AAGGTTAAGACACTTATTCTGGGA 57.302 37.500 0.00 0.00 0.00 4.37
4185 6255 6.051179 AGGTTAAGACACTTATTCTGGGAC 57.949 41.667 0.00 0.00 0.00 4.46
4186 6256 5.546499 AGGTTAAGACACTTATTCTGGGACA 59.454 40.000 0.00 0.00 0.00 4.02
4229 6301 9.915629 TTTATCCAAACACGTTATTGCTAAAAT 57.084 25.926 4.86 0.00 0.00 1.82
4358 6435 4.779993 ATCATCCTTCACCCTAGAAACC 57.220 45.455 0.00 0.00 0.00 3.27
4378 6455 1.471287 CAACCATGTCACATGGCTCTG 59.529 52.381 33.23 23.72 42.82 3.35
4649 6746 4.705519 GCATGCAGCACCGCGTTT 62.706 61.111 14.21 0.00 44.79 3.60
4898 7001 4.926860 TGTTGATGTTACAGAAGCATCG 57.073 40.909 0.00 0.00 41.17 3.84
5005 7108 7.176690 GGGGGTAATCAATTATACCTGTCATTG 59.823 40.741 11.78 0.00 41.13 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.663379 GGGCCCGCACCTAAATGAAC 61.663 60.000 5.69 0.00 0.00 3.18
2 3 1.379309 GGGCCCGCACCTAAATGAA 60.379 57.895 5.69 0.00 0.00 2.57
3 4 2.274104 GGGCCCGCACCTAAATGA 59.726 61.111 5.69 0.00 0.00 2.57
4 5 3.209097 CGGGCCCGCACCTAAATG 61.209 66.667 34.96 0.22 0.00 2.32
5 6 3.404438 TCGGGCCCGCACCTAAAT 61.404 61.111 39.89 0.00 39.59 1.40
6 7 4.397832 GTCGGGCCCGCACCTAAA 62.398 66.667 39.89 18.28 39.59 1.85
14 15 2.246761 TTTATGACAGGTCGGGCCCG 62.247 60.000 39.13 39.13 38.26 6.13
15 16 0.182775 ATTTATGACAGGTCGGGCCC 59.817 55.000 13.57 13.57 38.26 5.80
16 17 2.550208 CCTATTTATGACAGGTCGGGCC 60.550 54.545 0.00 0.00 37.58 5.80
17 18 2.104281 ACCTATTTATGACAGGTCGGGC 59.896 50.000 0.00 0.00 38.29 6.13
18 19 4.417426 AACCTATTTATGACAGGTCGGG 57.583 45.455 0.00 0.00 41.90 5.14
19 20 8.446599 AATAAAACCTATTTATGACAGGTCGG 57.553 34.615 0.00 0.00 41.90 4.79
35 36 9.602568 AATGACCGTTGTTTAAAAATAAAACCT 57.397 25.926 0.00 0.00 36.26 3.50
39 40 8.827677 CCCAAATGACCGTTGTTTAAAAATAAA 58.172 29.630 0.00 0.00 0.00 1.40
40 41 7.985752 ACCCAAATGACCGTTGTTTAAAAATAA 59.014 29.630 0.00 0.00 0.00 1.40
41 42 7.498443 ACCCAAATGACCGTTGTTTAAAAATA 58.502 30.769 0.00 0.00 0.00 1.40
42 43 6.350103 ACCCAAATGACCGTTGTTTAAAAAT 58.650 32.000 0.00 0.00 0.00 1.82
43 44 5.731591 ACCCAAATGACCGTTGTTTAAAAA 58.268 33.333 0.00 0.00 0.00 1.94
44 45 5.340439 ACCCAAATGACCGTTGTTTAAAA 57.660 34.783 0.00 0.00 0.00 1.52
45 46 5.340439 AACCCAAATGACCGTTGTTTAAA 57.660 34.783 0.00 0.00 0.00 1.52
46 47 5.340439 AAACCCAAATGACCGTTGTTTAA 57.660 34.783 0.00 0.00 0.00 1.52
47 48 5.340439 AAAACCCAAATGACCGTTGTTTA 57.660 34.783 0.00 0.00 0.00 2.01
48 49 3.897141 AAACCCAAATGACCGTTGTTT 57.103 38.095 0.00 0.00 0.00 2.83
49 50 3.897141 AAAACCCAAATGACCGTTGTT 57.103 38.095 0.00 0.00 0.00 2.83
50 51 3.897141 AAAAACCCAAATGACCGTTGT 57.103 38.095 0.00 0.00 0.00 3.32
69 70 0.248702 GCGGTCGGCTGTTTCAAAAA 60.249 50.000 0.00 0.00 39.11 1.94
70 71 1.357334 GCGGTCGGCTGTTTCAAAA 59.643 52.632 0.00 0.00 39.11 2.44
71 72 2.887889 CGCGGTCGGCTGTTTCAAA 61.888 57.895 0.00 0.00 40.44 2.69
72 73 3.342627 CGCGGTCGGCTGTTTCAA 61.343 61.111 0.00 0.00 40.44 2.69
82 83 3.834373 CTACCAAACGCGCGGTCG 61.834 66.667 35.22 23.42 36.69 4.79
83 84 1.834458 AAACTACCAAACGCGCGGTC 61.834 55.000 35.22 0.00 36.69 4.79
84 85 1.438562 AAAACTACCAAACGCGCGGT 61.439 50.000 35.22 28.24 39.41 5.68
85 86 0.317186 AAAAACTACCAAACGCGCGG 60.317 50.000 35.22 18.70 0.00 6.46
86 87 3.151848 AAAAACTACCAAACGCGCG 57.848 47.368 30.96 30.96 0.00 6.86
128 129 2.752075 ACGGGTTAGGGTTCCAAAAA 57.248 45.000 0.00 0.00 0.00 1.94
129 130 3.872459 TTACGGGTTAGGGTTCCAAAA 57.128 42.857 0.00 0.00 0.00 2.44
130 131 3.138098 ACTTTACGGGTTAGGGTTCCAAA 59.862 43.478 0.00 0.00 0.00 3.28
131 132 2.710471 ACTTTACGGGTTAGGGTTCCAA 59.290 45.455 0.00 0.00 0.00 3.53
132 133 2.337849 ACTTTACGGGTTAGGGTTCCA 58.662 47.619 0.00 0.00 0.00 3.53
133 134 3.515502 ACTACTTTACGGGTTAGGGTTCC 59.484 47.826 0.00 0.00 0.00 3.62
134 135 4.808414 ACTACTTTACGGGTTAGGGTTC 57.192 45.455 0.00 0.00 0.00 3.62
135 136 5.333581 ACTACTACTTTACGGGTTAGGGTT 58.666 41.667 0.00 0.00 0.00 4.11
136 137 4.935578 ACTACTACTTTACGGGTTAGGGT 58.064 43.478 0.00 0.00 0.00 4.34
137 138 5.921962 AACTACTACTTTACGGGTTAGGG 57.078 43.478 0.00 0.00 0.00 3.53
138 139 9.305925 CATAAAACTACTACTTTACGGGTTAGG 57.694 37.037 0.00 0.00 0.00 2.69
139 140 8.811378 GCATAAAACTACTACTTTACGGGTTAG 58.189 37.037 0.00 0.00 0.00 2.34
140 141 8.531146 AGCATAAAACTACTACTTTACGGGTTA 58.469 33.333 0.00 0.00 0.00 2.85
141 142 7.389232 AGCATAAAACTACTACTTTACGGGTT 58.611 34.615 0.00 0.00 0.00 4.11
142 143 6.939622 AGCATAAAACTACTACTTTACGGGT 58.060 36.000 0.00 0.00 0.00 5.28
143 144 9.538508 AATAGCATAAAACTACTACTTTACGGG 57.461 33.333 0.00 0.00 0.00 5.28
149 150 8.749499 CGCGTAAATAGCATAAAACTACTACTT 58.251 33.333 0.00 0.00 34.19 2.24
150 151 8.131100 TCGCGTAAATAGCATAAAACTACTACT 58.869 33.333 5.77 0.00 34.19 2.57
151 152 8.273643 TCGCGTAAATAGCATAAAACTACTAC 57.726 34.615 5.77 0.00 34.19 2.73
152 153 9.467258 AATCGCGTAAATAGCATAAAACTACTA 57.533 29.630 5.77 0.00 34.19 1.82
153 154 7.941795 ATCGCGTAAATAGCATAAAACTACT 57.058 32.000 5.77 0.00 34.19 2.57
154 155 7.739043 GGAATCGCGTAAATAGCATAAAACTAC 59.261 37.037 5.77 0.00 34.19 2.73
155 156 7.438757 TGGAATCGCGTAAATAGCATAAAACTA 59.561 33.333 5.77 0.00 34.19 2.24
156 157 6.259167 TGGAATCGCGTAAATAGCATAAAACT 59.741 34.615 5.77 0.00 34.19 2.66
157 158 6.423862 TGGAATCGCGTAAATAGCATAAAAC 58.576 36.000 5.77 0.00 34.19 2.43
158 159 6.606234 TGGAATCGCGTAAATAGCATAAAA 57.394 33.333 5.77 0.00 34.19 1.52
159 160 6.795098 ATGGAATCGCGTAAATAGCATAAA 57.205 33.333 5.77 0.00 34.19 1.40
160 161 6.598525 CAATGGAATCGCGTAAATAGCATAA 58.401 36.000 5.77 0.00 34.19 1.90
161 162 5.390461 GCAATGGAATCGCGTAAATAGCATA 60.390 40.000 5.77 0.00 34.19 3.14
162 163 4.613622 GCAATGGAATCGCGTAAATAGCAT 60.614 41.667 5.77 0.00 34.19 3.79
163 164 3.303725 GCAATGGAATCGCGTAAATAGCA 60.304 43.478 5.77 0.00 34.19 3.49
164 165 3.226347 GCAATGGAATCGCGTAAATAGC 58.774 45.455 5.77 0.00 0.00 2.97
165 166 3.249799 TGGCAATGGAATCGCGTAAATAG 59.750 43.478 5.77 0.00 0.00 1.73
166 167 3.206964 TGGCAATGGAATCGCGTAAATA 58.793 40.909 5.77 0.00 0.00 1.40
167 168 2.020720 TGGCAATGGAATCGCGTAAAT 58.979 42.857 5.77 0.00 0.00 1.40
168 169 1.454201 TGGCAATGGAATCGCGTAAA 58.546 45.000 5.77 0.00 0.00 2.01
169 170 1.454201 TTGGCAATGGAATCGCGTAA 58.546 45.000 5.77 0.00 0.00 3.18
170 171 1.674359 ATTGGCAATGGAATCGCGTA 58.326 45.000 12.82 0.00 0.00 4.42
171 172 1.674359 TATTGGCAATGGAATCGCGT 58.326 45.000 22.57 0.00 0.00 6.01
172 173 2.485426 AGATATTGGCAATGGAATCGCG 59.515 45.455 22.57 0.00 0.00 5.87
173 174 3.503363 TCAGATATTGGCAATGGAATCGC 59.497 43.478 22.57 4.23 0.00 4.58
174 175 4.516321 TGTCAGATATTGGCAATGGAATCG 59.484 41.667 22.57 12.82 38.77 3.34
187 188 5.587844 GTCCACATTGCTTCTGTCAGATATT 59.412 40.000 2.68 0.00 0.00 1.28
189 190 4.223700 AGTCCACATTGCTTCTGTCAGATA 59.776 41.667 2.68 0.00 0.00 1.98
190 191 3.008813 AGTCCACATTGCTTCTGTCAGAT 59.991 43.478 2.68 0.00 0.00 2.90
191 192 2.369860 AGTCCACATTGCTTCTGTCAGA 59.630 45.455 0.00 0.00 0.00 3.27
192 193 2.775890 AGTCCACATTGCTTCTGTCAG 58.224 47.619 0.00 0.00 0.00 3.51
194 195 5.886960 AATAAGTCCACATTGCTTCTGTC 57.113 39.130 0.00 0.00 0.00 3.51
195 196 6.711277 TCTAATAAGTCCACATTGCTTCTGT 58.289 36.000 0.00 0.00 0.00 3.41
220 225 0.905357 ACCCTGTACTCCACTGATGC 59.095 55.000 0.00 0.00 0.00 3.91
257 262 9.616156 CACAAGAGACTCTCTAGTATAGGTTTA 57.384 37.037 9.08 0.00 40.28 2.01
315 320 3.266772 ACAGATTATGGAGGTTTGCAGGA 59.733 43.478 0.00 0.00 0.00 3.86
328 333 9.265901 CTAGTAACCAATTCCTCACAGATTATG 57.734 37.037 0.00 0.00 0.00 1.90
340 345 5.462398 CACAGCGATACTAGTAACCAATTCC 59.538 44.000 6.70 0.00 0.00 3.01
355 360 4.560136 TTTTGACTTTTGCACAGCGATA 57.440 36.364 0.00 0.00 0.00 2.92
358 363 3.551082 TGATTTTTGACTTTTGCACAGCG 59.449 39.130 0.00 0.00 0.00 5.18
360 365 8.176365 TGAATTTGATTTTTGACTTTTGCACAG 58.824 29.630 0.00 0.00 0.00 3.66
363 368 8.675504 ACATGAATTTGATTTTTGACTTTTGCA 58.324 25.926 0.00 0.00 0.00 4.08
364 369 9.505995 AACATGAATTTGATTTTTGACTTTTGC 57.494 25.926 0.00 0.00 0.00 3.68
370 375 8.600449 TGGGTAACATGAATTTGATTTTTGAC 57.400 30.769 0.00 0.00 39.74 3.18
372 377 8.830201 TCTGGGTAACATGAATTTGATTTTTG 57.170 30.769 0.00 0.00 39.74 2.44
381 386 9.920946 ACAAGTATAATCTGGGTAACATGAATT 57.079 29.630 0.00 0.00 39.74 2.17
385 390 9.832445 AGTTACAAGTATAATCTGGGTAACATG 57.168 33.333 12.52 0.00 39.14 3.21
389 394 9.169592 GCAAAGTTACAAGTATAATCTGGGTAA 57.830 33.333 0.00 0.00 0.00 2.85
390 395 8.322828 TGCAAAGTTACAAGTATAATCTGGGTA 58.677 33.333 0.00 0.00 0.00 3.69
391 396 7.172342 TGCAAAGTTACAAGTATAATCTGGGT 58.828 34.615 0.00 0.00 0.00 4.51
393 398 8.184192 CCTTGCAAAGTTACAAGTATAATCTGG 58.816 37.037 14.27 0.00 44.25 3.86
395 400 9.167311 CTCCTTGCAAAGTTACAAGTATAATCT 57.833 33.333 14.27 0.00 44.25 2.40
396 401 8.398665 CCTCCTTGCAAAGTTACAAGTATAATC 58.601 37.037 14.27 0.00 44.25 1.75
398 403 7.174253 CACCTCCTTGCAAAGTTACAAGTATAA 59.826 37.037 14.27 1.52 44.25 0.98
399 404 6.653320 CACCTCCTTGCAAAGTTACAAGTATA 59.347 38.462 14.27 3.25 44.25 1.47
400 405 5.473504 CACCTCCTTGCAAAGTTACAAGTAT 59.526 40.000 14.27 0.00 44.25 2.12
401 406 4.819630 CACCTCCTTGCAAAGTTACAAGTA 59.180 41.667 14.27 2.17 44.25 2.24
402 407 3.632145 CACCTCCTTGCAAAGTTACAAGT 59.368 43.478 14.27 0.00 44.25 3.16
403 408 3.632145 ACACCTCCTTGCAAAGTTACAAG 59.368 43.478 0.00 10.29 44.25 3.16
405 410 3.290948 ACACCTCCTTGCAAAGTTACA 57.709 42.857 0.00 0.00 44.25 2.41
406 411 5.761165 TTTACACCTCCTTGCAAAGTTAC 57.239 39.130 0.00 0.00 44.25 2.50
407 412 5.300792 CCTTTTACACCTCCTTGCAAAGTTA 59.699 40.000 0.00 0.00 44.25 2.24
408 413 4.099419 CCTTTTACACCTCCTTGCAAAGTT 59.901 41.667 0.00 0.00 44.25 2.66
410 415 3.888930 TCCTTTTACACCTCCTTGCAAAG 59.111 43.478 0.00 0.00 45.69 2.77
411 416 3.904717 TCCTTTTACACCTCCTTGCAAA 58.095 40.909 0.00 0.00 0.00 3.68
412 417 3.586470 TCCTTTTACACCTCCTTGCAA 57.414 42.857 0.00 0.00 0.00 4.08
413 418 3.586470 TTCCTTTTACACCTCCTTGCA 57.414 42.857 0.00 0.00 0.00 4.08
414 419 3.444034 GGATTCCTTTTACACCTCCTTGC 59.556 47.826 0.00 0.00 0.00 4.01
416 421 3.585732 TCGGATTCCTTTTACACCTCCTT 59.414 43.478 0.30 0.00 0.00 3.36
417 422 3.178865 TCGGATTCCTTTTACACCTCCT 58.821 45.455 0.30 0.00 0.00 3.69
418 423 3.622166 TCGGATTCCTTTTACACCTCC 57.378 47.619 0.30 0.00 0.00 4.30
419 424 5.163652 CCAAATCGGATTCCTTTTACACCTC 60.164 44.000 3.28 0.00 36.56 3.85
421 426 4.676986 GCCAAATCGGATTCCTTTTACACC 60.677 45.833 3.28 0.00 36.56 4.16
422 427 4.157840 AGCCAAATCGGATTCCTTTTACAC 59.842 41.667 3.28 0.00 36.56 2.90
424 429 4.672409 CAGCCAAATCGGATTCCTTTTAC 58.328 43.478 3.28 0.00 36.56 2.01
426 431 2.094026 GCAGCCAAATCGGATTCCTTTT 60.094 45.455 3.28 0.00 36.56 2.27
428 433 1.106285 GCAGCCAAATCGGATTCCTT 58.894 50.000 3.28 0.00 36.56 3.36
431 436 2.466846 CATTGCAGCCAAATCGGATTC 58.533 47.619 3.28 0.00 36.56 2.52
433 438 0.748450 CCATTGCAGCCAAATCGGAT 59.252 50.000 0.00 0.00 36.56 4.18
434 439 0.323269 TCCATTGCAGCCAAATCGGA 60.323 50.000 0.00 0.00 36.56 4.55
435 440 0.101759 CTCCATTGCAGCCAAATCGG 59.898 55.000 0.00 0.00 34.05 4.18
436 441 0.526954 GCTCCATTGCAGCCAAATCG 60.527 55.000 0.00 0.00 34.05 3.34
437 442 0.533491 TGCTCCATTGCAGCCAAATC 59.467 50.000 0.00 0.00 38.12 2.17
438 443 0.978151 TTGCTCCATTGCAGCCAAAT 59.022 45.000 0.00 0.00 44.27 2.32
439 444 0.319083 CTTGCTCCATTGCAGCCAAA 59.681 50.000 0.00 0.00 44.27 3.28
440 445 1.969085 CTTGCTCCATTGCAGCCAA 59.031 52.632 0.00 0.00 44.27 4.52
441 446 2.642254 GCTTGCTCCATTGCAGCCA 61.642 57.895 0.00 0.00 44.27 4.75
442 447 2.183555 GCTTGCTCCATTGCAGCC 59.816 61.111 0.00 0.00 44.27 4.85
443 448 1.153823 CTGCTTGCTCCATTGCAGC 60.154 57.895 0.00 0.00 44.72 5.25
445 450 2.967397 GCTGCTTGCTCCATTGCA 59.033 55.556 0.00 0.00 41.65 4.08
454 459 2.600867 CGTTAGAGTTAGAGCTGCTTGC 59.399 50.000 2.53 0.00 43.29 4.01
455 460 4.098055 TCGTTAGAGTTAGAGCTGCTTG 57.902 45.455 2.53 0.00 0.00 4.01
456 461 4.993029 ATCGTTAGAGTTAGAGCTGCTT 57.007 40.909 2.53 0.00 0.00 3.91
457 462 4.202070 GGAATCGTTAGAGTTAGAGCTGCT 60.202 45.833 0.00 0.00 0.00 4.24
458 463 4.045783 GGAATCGTTAGAGTTAGAGCTGC 58.954 47.826 0.00 0.00 0.00 5.25
459 464 4.612943 GGGAATCGTTAGAGTTAGAGCTG 58.387 47.826 0.00 0.00 0.00 4.24
460 465 3.315749 CGGGAATCGTTAGAGTTAGAGCT 59.684 47.826 0.00 0.00 0.00 4.09
461 466 3.314635 TCGGGAATCGTTAGAGTTAGAGC 59.685 47.826 0.00 0.00 40.32 4.09
462 467 5.496133 TTCGGGAATCGTTAGAGTTAGAG 57.504 43.478 0.00 0.00 40.32 2.43
463 468 4.201990 GCTTCGGGAATCGTTAGAGTTAGA 60.202 45.833 0.00 0.00 40.32 2.10
464 469 4.043073 GCTTCGGGAATCGTTAGAGTTAG 58.957 47.826 0.00 0.00 40.32 2.34
465 470 3.444742 TGCTTCGGGAATCGTTAGAGTTA 59.555 43.478 0.00 0.00 40.32 2.24
466 471 2.232941 TGCTTCGGGAATCGTTAGAGTT 59.767 45.455 0.00 0.00 40.32 3.01
467 472 1.822990 TGCTTCGGGAATCGTTAGAGT 59.177 47.619 0.00 0.00 40.32 3.24
468 473 2.579207 TGCTTCGGGAATCGTTAGAG 57.421 50.000 0.00 0.00 40.32 2.43
469 474 2.613691 GTTGCTTCGGGAATCGTTAGA 58.386 47.619 0.00 0.00 40.32 2.10
470 475 1.323534 CGTTGCTTCGGGAATCGTTAG 59.676 52.381 0.00 0.00 40.32 2.34
471 476 1.352114 CGTTGCTTCGGGAATCGTTA 58.648 50.000 0.00 0.00 40.32 3.18
472 477 1.908066 GCGTTGCTTCGGGAATCGTT 61.908 55.000 3.70 0.00 40.32 3.85
473 478 2.388232 GCGTTGCTTCGGGAATCGT 61.388 57.895 3.70 0.00 40.32 3.73
474 479 2.399611 GCGTTGCTTCGGGAATCG 59.600 61.111 3.70 0.00 40.90 3.34
475 480 1.582610 TTGGCGTTGCTTCGGGAATC 61.583 55.000 3.70 0.00 0.00 2.52
476 481 1.175983 TTTGGCGTTGCTTCGGGAAT 61.176 50.000 3.70 0.00 0.00 3.01
477 482 1.824329 TTTGGCGTTGCTTCGGGAA 60.824 52.632 3.70 0.00 0.00 3.97
478 483 2.203224 TTTGGCGTTGCTTCGGGA 60.203 55.556 3.70 0.00 0.00 5.14
479 484 2.050442 GTTTGGCGTTGCTTCGGG 60.050 61.111 3.70 0.00 0.00 5.14
480 485 1.657181 GTGTTTGGCGTTGCTTCGG 60.657 57.895 3.70 0.00 0.00 4.30
481 486 0.929824 CTGTGTTTGGCGTTGCTTCG 60.930 55.000 0.00 0.00 0.00 3.79
482 487 0.380378 TCTGTGTTTGGCGTTGCTTC 59.620 50.000 0.00 0.00 0.00 3.86
483 488 0.814457 TTCTGTGTTTGGCGTTGCTT 59.186 45.000 0.00 0.00 0.00 3.91
484 489 0.381801 CTTCTGTGTTTGGCGTTGCT 59.618 50.000 0.00 0.00 0.00 3.91
485 490 1.208642 GCTTCTGTGTTTGGCGTTGC 61.209 55.000 0.00 0.00 0.00 4.17
486 491 0.381801 AGCTTCTGTGTTTGGCGTTG 59.618 50.000 0.00 0.00 0.00 4.10
487 492 0.381801 CAGCTTCTGTGTTTGGCGTT 59.618 50.000 0.00 0.00 0.00 4.84
488 493 1.447317 CCAGCTTCTGTGTTTGGCGT 61.447 55.000 0.00 0.00 0.00 5.68
489 494 1.165907 TCCAGCTTCTGTGTTTGGCG 61.166 55.000 0.00 0.00 0.00 5.69
490 495 1.068055 CATCCAGCTTCTGTGTTTGGC 60.068 52.381 0.00 0.00 0.00 4.52
491 496 2.233271 ACATCCAGCTTCTGTGTTTGG 58.767 47.619 0.00 0.00 0.00 3.28
492 497 3.316029 TCAACATCCAGCTTCTGTGTTTG 59.684 43.478 0.00 0.00 31.43 2.93
493 498 3.316308 GTCAACATCCAGCTTCTGTGTTT 59.684 43.478 0.00 0.00 31.43 2.83
494 499 2.880890 GTCAACATCCAGCTTCTGTGTT 59.119 45.455 0.00 0.00 33.15 3.32
495 500 2.498167 GTCAACATCCAGCTTCTGTGT 58.502 47.619 0.00 0.00 0.00 3.72
496 501 1.808945 GGTCAACATCCAGCTTCTGTG 59.191 52.381 0.00 0.00 0.00 3.66
497 502 1.421268 TGGTCAACATCCAGCTTCTGT 59.579 47.619 0.00 0.00 0.00 3.41
498 503 2.082231 CTGGTCAACATCCAGCTTCTG 58.918 52.381 0.00 0.00 44.46 3.02
499 504 2.486472 CTGGTCAACATCCAGCTTCT 57.514 50.000 0.00 0.00 44.46 2.85
505 510 2.644299 ACAGGATTCTGGTCAACATCCA 59.356 45.455 5.84 0.00 44.99 3.41
506 511 3.356529 ACAGGATTCTGGTCAACATCC 57.643 47.619 5.84 0.00 44.99 3.51
507 512 4.080863 AGGTACAGGATTCTGGTCAACATC 60.081 45.833 5.84 0.00 44.99 3.06
508 513 3.846588 AGGTACAGGATTCTGGTCAACAT 59.153 43.478 5.84 0.00 44.99 2.71
509 514 3.007940 CAGGTACAGGATTCTGGTCAACA 59.992 47.826 5.84 0.00 44.99 3.33
510 515 3.260884 TCAGGTACAGGATTCTGGTCAAC 59.739 47.826 5.84 0.00 44.99 3.18
511 516 3.516586 TCAGGTACAGGATTCTGGTCAA 58.483 45.455 5.84 0.00 44.99 3.18
512 517 3.184382 TCAGGTACAGGATTCTGGTCA 57.816 47.619 5.84 0.00 44.99 4.02
513 518 4.553330 TTTCAGGTACAGGATTCTGGTC 57.447 45.455 5.84 0.00 44.99 4.02
514 519 4.383118 CGATTTCAGGTACAGGATTCTGGT 60.383 45.833 5.84 0.00 44.99 4.00
515 520 4.122776 CGATTTCAGGTACAGGATTCTGG 58.877 47.826 5.84 0.00 44.99 3.86
516 521 4.122776 CCGATTTCAGGTACAGGATTCTG 58.877 47.826 0.00 0.00 46.10 3.02
517 522 3.134804 CCCGATTTCAGGTACAGGATTCT 59.865 47.826 0.00 0.00 0.00 2.40
518 523 3.467803 CCCGATTTCAGGTACAGGATTC 58.532 50.000 0.00 0.00 0.00 2.52
519 524 2.421529 GCCCGATTTCAGGTACAGGATT 60.422 50.000 0.00 0.00 0.00 3.01
520 525 1.141053 GCCCGATTTCAGGTACAGGAT 59.859 52.381 0.00 0.00 0.00 3.24
521 526 0.539986 GCCCGATTTCAGGTACAGGA 59.460 55.000 0.00 0.00 0.00 3.86
522 527 0.810031 CGCCCGATTTCAGGTACAGG 60.810 60.000 0.00 0.00 0.00 4.00
523 528 0.810031 CCGCCCGATTTCAGGTACAG 60.810 60.000 0.00 0.00 0.00 2.74
524 529 1.219664 CCGCCCGATTTCAGGTACA 59.780 57.895 0.00 0.00 0.00 2.90
525 530 0.529992 CTCCGCCCGATTTCAGGTAC 60.530 60.000 0.00 0.00 0.00 3.34
526 531 0.685131 TCTCCGCCCGATTTCAGGTA 60.685 55.000 0.00 0.00 0.00 3.08
527 532 1.961180 CTCTCCGCCCGATTTCAGGT 61.961 60.000 0.00 0.00 0.00 4.00
528 533 1.227380 CTCTCCGCCCGATTTCAGG 60.227 63.158 0.00 0.00 0.00 3.86
529 534 0.249238 CTCTCTCCGCCCGATTTCAG 60.249 60.000 0.00 0.00 0.00 3.02
530 535 0.683179 TCTCTCTCCGCCCGATTTCA 60.683 55.000 0.00 0.00 0.00 2.69
531 536 0.249114 GTCTCTCTCCGCCCGATTTC 60.249 60.000 0.00 0.00 0.00 2.17
532 537 1.817209 GTCTCTCTCCGCCCGATTT 59.183 57.895 0.00 0.00 0.00 2.17
533 538 2.482333 CGTCTCTCTCCGCCCGATT 61.482 63.158 0.00 0.00 0.00 3.34
534 539 2.902846 CGTCTCTCTCCGCCCGAT 60.903 66.667 0.00 0.00 0.00 4.18
574 579 1.804326 GTGCTACACGCCTACACGG 60.804 63.158 0.00 0.00 38.05 4.94
575 580 3.763319 GTGCTACACGCCTACACG 58.237 61.111 0.00 0.00 38.05 4.49
584 589 4.047030 CGTCCGTACGTGCTACAC 57.953 61.111 15.21 0.12 44.21 2.90
593 598 2.806621 GAACCGCACCGTCCGTAC 60.807 66.667 0.00 0.00 0.00 3.67
594 599 4.403137 CGAACCGCACCGTCCGTA 62.403 66.667 0.00 0.00 0.00 4.02
596 601 2.321668 TATACGAACCGCACCGTCCG 62.322 60.000 0.00 0.00 39.86 4.79
597 602 0.179140 TTATACGAACCGCACCGTCC 60.179 55.000 0.00 0.00 39.86 4.79
598 603 1.194495 CTTATACGAACCGCACCGTC 58.806 55.000 0.00 0.00 39.86 4.79
599 604 0.527565 ACTTATACGAACCGCACCGT 59.472 50.000 0.00 0.00 42.15 4.83
600 605 1.322338 CAACTTATACGAACCGCACCG 59.678 52.381 0.00 0.00 0.00 4.94
601 606 1.662122 CCAACTTATACGAACCGCACC 59.338 52.381 0.00 0.00 0.00 5.01
602 607 1.061566 GCCAACTTATACGAACCGCAC 59.938 52.381 0.00 0.00 0.00 5.34
603 608 1.337917 TGCCAACTTATACGAACCGCA 60.338 47.619 0.00 0.00 0.00 5.69
604 609 1.361793 TGCCAACTTATACGAACCGC 58.638 50.000 0.00 0.00 0.00 5.68
605 610 4.399978 CTTTTGCCAACTTATACGAACCG 58.600 43.478 0.00 0.00 0.00 4.44
606 611 4.380128 CCCTTTTGCCAACTTATACGAACC 60.380 45.833 0.00 0.00 0.00 3.62
607 612 4.729595 CCCTTTTGCCAACTTATACGAAC 58.270 43.478 0.00 0.00 0.00 3.95
608 613 3.191791 GCCCTTTTGCCAACTTATACGAA 59.808 43.478 0.00 0.00 0.00 3.85
609 614 2.750712 GCCCTTTTGCCAACTTATACGA 59.249 45.455 0.00 0.00 0.00 3.43
610 615 2.752903 AGCCCTTTTGCCAACTTATACG 59.247 45.455 0.00 0.00 0.00 3.06
611 616 3.130516 GGAGCCCTTTTGCCAACTTATAC 59.869 47.826 0.00 0.00 0.00 1.47
612 617 3.361786 GGAGCCCTTTTGCCAACTTATA 58.638 45.455 0.00 0.00 0.00 0.98
613 618 2.179427 GGAGCCCTTTTGCCAACTTAT 58.821 47.619 0.00 0.00 0.00 1.73
614 619 1.627864 GGAGCCCTTTTGCCAACTTA 58.372 50.000 0.00 0.00 0.00 2.24
615 620 1.463553 CGGAGCCCTTTTGCCAACTT 61.464 55.000 0.00 0.00 0.00 2.66
616 621 1.903404 CGGAGCCCTTTTGCCAACT 60.903 57.895 0.00 0.00 0.00 3.16
617 622 2.650778 CGGAGCCCTTTTGCCAAC 59.349 61.111 0.00 0.00 0.00 3.77
618 623 2.600173 CCGGAGCCCTTTTGCCAA 60.600 61.111 0.00 0.00 0.00 4.52
619 624 3.444818 AACCGGAGCCCTTTTGCCA 62.445 57.895 9.46 0.00 0.00 4.92
620 625 2.600470 AACCGGAGCCCTTTTGCC 60.600 61.111 9.46 0.00 0.00 4.52
621 626 2.650778 CAACCGGAGCCCTTTTGC 59.349 61.111 9.46 0.00 0.00 3.68
622 627 2.650778 GCAACCGGAGCCCTTTTG 59.349 61.111 9.46 0.39 0.00 2.44
623 628 2.983592 CGCAACCGGAGCCCTTTT 60.984 61.111 9.46 0.00 0.00 2.27
641 646 3.894947 GAGCTCCGAGTCGCCCTC 61.895 72.222 7.12 8.16 36.80 4.30
710 715 2.443016 CACTCCCTCTCCCCTCCG 60.443 72.222 0.00 0.00 0.00 4.63
711 716 2.041405 CCACTCCCTCTCCCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
712 717 2.041405 CCCACTCCCTCTCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
713 718 3.700350 CCCCACTCCCTCTCCCCT 61.700 72.222 0.00 0.00 0.00 4.79
855 870 1.339438 CCAATCCACTCTGGTCTGGTG 60.339 57.143 4.23 0.00 39.03 4.17
856 871 0.987294 CCAATCCACTCTGGTCTGGT 59.013 55.000 4.23 0.00 39.03 4.00
1060 1091 1.779644 TGGATGGGGATGGGGATGG 60.780 63.158 0.00 0.00 0.00 3.51
1089 1126 3.452024 GAGCTCCGCGACGAGGTAC 62.452 68.421 17.49 10.57 40.60 3.34
1090 1127 3.200593 GAGCTCCGCGACGAGGTA 61.201 66.667 17.49 3.78 40.60 3.08
1761 1801 3.450457 AGGAGTACTCATTTCTCTGGCAG 59.550 47.826 23.91 8.58 0.00 4.85
1833 1873 4.300803 TCATCATCAAAAACAGCACAAGC 58.699 39.130 0.00 0.00 42.56 4.01
1893 3733 1.194781 ATAGGCCGCCGATCAGGAAT 61.195 55.000 3.05 0.00 45.00 3.01
2007 3952 2.043389 TCCTGCCTTACAGTACCCTACA 59.957 50.000 0.00 0.00 45.68 2.74
2101 4046 2.097825 GAGGCCATGAATCAAAGTGCT 58.902 47.619 5.01 0.00 0.00 4.40
2377 4322 1.362355 GAACCAAACCAGTTGCCGG 59.638 57.895 0.00 0.00 35.74 6.13
2562 4507 2.323968 TAGTTATCAGCGCCATTGCA 57.676 45.000 2.29 0.00 37.32 4.08
2664 4609 7.370383 TCATTTCAAGTAACCTGAAAGCATTC 58.630 34.615 7.27 0.00 35.41 2.67
2904 4849 2.741517 CGTGTATGAATCTGGTGTGCAA 59.258 45.455 0.00 0.00 0.00 4.08
3313 5258 0.666913 GGCTCACATGATGCATCCAC 59.333 55.000 23.67 0.06 0.00 4.02
3408 5353 1.621317 TCTACGAAGTTCCACATGCCA 59.379 47.619 0.00 0.00 37.78 4.92
3424 5369 4.575885 TGCCAAACAGTATCCAACTCTAC 58.424 43.478 0.00 0.00 35.76 2.59
3475 5420 5.815222 TGTATGTCGTTATTGTGGGATTCAG 59.185 40.000 0.00 0.00 0.00 3.02
4103 6173 0.916809 ACCTAATTTGGGACGGAGGG 59.083 55.000 10.77 0.00 0.00 4.30
4104 6174 1.280998 ACACCTAATTTGGGACGGAGG 59.719 52.381 10.77 0.00 0.00 4.30
4105 6175 2.236395 AGACACCTAATTTGGGACGGAG 59.764 50.000 10.77 0.00 0.00 4.63
4106 6176 2.262637 AGACACCTAATTTGGGACGGA 58.737 47.619 10.77 0.00 0.00 4.69
4107 6177 2.781681 AGACACCTAATTTGGGACGG 57.218 50.000 10.77 0.14 0.00 4.79
4108 6178 5.243207 AGTTAAGACACCTAATTTGGGACG 58.757 41.667 10.77 1.39 0.00 4.79
4109 6179 7.013942 ACAAAGTTAAGACACCTAATTTGGGAC 59.986 37.037 10.77 1.77 32.19 4.46
4110 6180 7.064229 ACAAAGTTAAGACACCTAATTTGGGA 58.936 34.615 10.77 0.00 32.19 4.37
4111 6181 7.284919 ACAAAGTTAAGACACCTAATTTGGG 57.715 36.000 10.77 0.00 32.19 4.12
4112 6182 9.063615 AGTACAAAGTTAAGACACCTAATTTGG 57.936 33.333 4.22 4.22 32.19 3.28
4147 6217 9.533253 GTGTCTTAACCTTAGTACAACTTTGTA 57.467 33.333 0.00 0.00 42.35 2.41
4148 6218 8.262933 AGTGTCTTAACCTTAGTACAACTTTGT 58.737 33.333 0.00 0.00 44.86 2.83
4149 6219 8.658499 AGTGTCTTAACCTTAGTACAACTTTG 57.342 34.615 0.00 0.00 0.00 2.77
4156 6226 9.583765 CCAGAATAAGTGTCTTAACCTTAGTAC 57.416 37.037 0.00 0.00 0.00 2.73
4157 6227 8.755977 CCCAGAATAAGTGTCTTAACCTTAGTA 58.244 37.037 0.00 0.00 0.00 1.82
4158 6228 7.456902 TCCCAGAATAAGTGTCTTAACCTTAGT 59.543 37.037 0.00 0.00 0.00 2.24
4159 6229 7.764901 GTCCCAGAATAAGTGTCTTAACCTTAG 59.235 40.741 0.00 0.00 0.00 2.18
4160 6230 7.236019 TGTCCCAGAATAAGTGTCTTAACCTTA 59.764 37.037 0.00 0.00 0.00 2.69
4161 6231 6.043938 TGTCCCAGAATAAGTGTCTTAACCTT 59.956 38.462 0.00 0.00 0.00 3.50
4162 6232 5.546499 TGTCCCAGAATAAGTGTCTTAACCT 59.454 40.000 0.00 0.00 0.00 3.50
4163 6233 5.801380 TGTCCCAGAATAAGTGTCTTAACC 58.199 41.667 0.00 0.00 0.00 2.85
4164 6234 6.698380 TCTGTCCCAGAATAAGTGTCTTAAC 58.302 40.000 0.00 0.00 37.57 2.01
4165 6235 6.070767 CCTCTGTCCCAGAATAAGTGTCTTAA 60.071 42.308 0.00 0.00 40.18 1.85
4166 6236 5.422331 CCTCTGTCCCAGAATAAGTGTCTTA 59.578 44.000 0.00 0.00 40.18 2.10
4167 6237 4.223923 CCTCTGTCCCAGAATAAGTGTCTT 59.776 45.833 0.00 0.00 40.18 3.01
4168 6238 3.772025 CCTCTGTCCCAGAATAAGTGTCT 59.228 47.826 0.00 0.00 40.18 3.41
4169 6239 3.118592 CCCTCTGTCCCAGAATAAGTGTC 60.119 52.174 0.00 0.00 40.18 3.67
4170 6240 2.840651 CCCTCTGTCCCAGAATAAGTGT 59.159 50.000 0.00 0.00 40.18 3.55
4171 6241 3.107601 TCCCTCTGTCCCAGAATAAGTG 58.892 50.000 0.00 0.00 40.18 3.16
4172 6242 3.246167 ACTCCCTCTGTCCCAGAATAAGT 60.246 47.826 0.00 0.00 40.18 2.24
4173 6243 3.379452 ACTCCCTCTGTCCCAGAATAAG 58.621 50.000 0.00 0.00 40.18 1.73
4174 6244 3.491766 ACTCCCTCTGTCCCAGAATAA 57.508 47.619 0.00 0.00 40.18 1.40
4175 6245 3.532232 AGTACTCCCTCTGTCCCAGAATA 59.468 47.826 0.00 0.00 40.18 1.75
4176 6246 2.316372 AGTACTCCCTCTGTCCCAGAAT 59.684 50.000 0.00 0.00 40.18 2.40
4177 6247 1.717077 AGTACTCCCTCTGTCCCAGAA 59.283 52.381 0.00 0.00 40.18 3.02
4178 6248 1.383963 AGTACTCCCTCTGTCCCAGA 58.616 55.000 0.00 0.00 38.25 3.86
4179 6249 3.603965 ATAGTACTCCCTCTGTCCCAG 57.396 52.381 0.00 0.00 0.00 4.45
4180 6250 6.989709 ATATATAGTACTCCCTCTGTCCCA 57.010 41.667 0.00 0.00 0.00 4.37
4181 6251 9.939424 ATAAATATATAGTACTCCCTCTGTCCC 57.061 37.037 0.00 0.00 0.00 4.46
4229 6301 6.539173 TGGGCAGAAAATTGTCTCTACTAAA 58.461 36.000 0.00 0.00 0.00 1.85
4358 6435 1.471287 CAGAGCCATGTGACATGGTTG 59.529 52.381 36.72 28.59 41.17 3.77
4378 6455 5.574443 GCTTTCAGCAGATTCAAAACCATAC 59.426 40.000 0.00 0.00 41.89 2.39
4649 6746 5.047092 TGCTCATCTCAAGTCAGTCATGTAA 60.047 40.000 0.00 0.00 0.00 2.41
4898 7001 5.685728 ACTATCTGCATAAAAGGGAAGGAC 58.314 41.667 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.