Multiple sequence alignment - TraesCS7D01G426900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G426900 chr7D 100.000 2817 0 0 1 2817 548067673 548064857 0.000000e+00 5203.0
1 TraesCS7D01G426900 chr7D 88.662 1323 76 31 778 2057 548324917 548326208 0.000000e+00 1544.0
2 TraesCS7D01G426900 chr7D 87.432 1281 82 26 760 2007 548560708 548561942 0.000000e+00 1400.0
3 TraesCS7D01G426900 chr7D 81.848 1234 121 54 866 2060 530361587 530360418 0.000000e+00 942.0
4 TraesCS7D01G426900 chr7D 87.633 566 46 12 146 710 548324183 548324725 1.100000e-178 636.0
5 TraesCS7D01G426900 chr7D 85.500 600 52 10 146 710 548550359 548550958 6.720000e-166 593.0
6 TraesCS7D01G426900 chr7D 84.488 606 55 20 145 713 530431605 530431002 1.890000e-156 562.0
7 TraesCS7D01G426900 chr7D 87.747 506 23 13 1927 2431 588776291 588776758 3.170000e-154 555.0
8 TraesCS7D01G426900 chr7D 87.352 506 26 5 1927 2431 595751510 595751042 1.910000e-151 545.0
9 TraesCS7D01G426900 chr7D 91.005 378 21 9 2443 2817 548326551 548326918 5.420000e-137 497.0
10 TraesCS7D01G426900 chr7D 87.892 223 18 7 2596 2815 573970885 573971101 1.300000e-63 254.0
11 TraesCS7D01G426900 chr7D 87.892 223 18 7 2596 2815 574248513 574248729 1.300000e-63 254.0
12 TraesCS7D01G426900 chr7D 90.860 186 9 7 2635 2817 530358128 530357948 2.800000e-60 243.0
13 TraesCS7D01G426900 chr7A 86.957 2093 147 70 760 2768 630671587 630673637 0.000000e+00 2237.0
14 TraesCS7D01G426900 chr7A 87.752 1290 85 22 760 2007 632265744 632267002 0.000000e+00 1439.0
15 TraesCS7D01G426900 chr7A 87.123 1328 90 43 760 2060 631652484 631651211 0.000000e+00 1430.0
16 TraesCS7D01G426900 chr7A 87.156 1308 96 30 760 2060 617551970 617550728 0.000000e+00 1419.0
17 TraesCS7D01G426900 chr7A 88.338 1149 76 24 760 1879 632188005 632189124 0.000000e+00 1327.0
18 TraesCS7D01G426900 chr7A 91.108 731 48 6 866 1579 631872453 631871723 0.000000e+00 974.0
19 TraesCS7D01G426900 chr7A 88.115 589 45 14 144 710 630670786 630671371 0.000000e+00 676.0
20 TraesCS7D01G426900 chr7A 82.588 827 70 39 1573 2349 631849533 631848731 0.000000e+00 662.0
21 TraesCS7D01G426900 chr7A 85.127 632 49 17 918 1539 663750713 663750117 3.100000e-169 604.0
22 TraesCS7D01G426900 chr7A 85.619 598 52 20 144 713 632187180 632187771 5.190000e-167 597.0
23 TraesCS7D01G426900 chr7A 84.704 608 50 15 145 710 631653306 631652700 4.070000e-158 568.0
24 TraesCS7D01G426900 chr7A 83.306 611 54 19 145 714 625641587 625642190 1.160000e-143 520.0
25 TraesCS7D01G426900 chr7A 83.115 610 58 18 145 710 625674360 625674968 5.380000e-142 514.0
26 TraesCS7D01G426900 chr7A 82.418 364 34 17 1915 2258 632190131 632190484 9.870000e-75 291.0
27 TraesCS7D01G426900 chr7A 91.765 85 4 2 2399 2483 630622991 630623072 6.380000e-22 115.0
28 TraesCS7D01G426900 chr7A 100.000 46 0 0 605 650 632265489 632265534 5.000000e-13 86.1
29 TraesCS7D01G426900 chr7B 86.733 1922 147 57 146 2010 591057628 591055758 0.000000e+00 2037.0
30 TraesCS7D01G426900 chr7B 86.935 1240 71 30 745 1945 591684275 591685462 0.000000e+00 1308.0
31 TraesCS7D01G426900 chr7B 85.424 1331 105 43 760 2054 591566054 591567331 0.000000e+00 1301.0
32 TraesCS7D01G426900 chr7B 89.469 1054 62 21 745 1782 591599761 591600781 0.000000e+00 1286.0
33 TraesCS7D01G426900 chr7B 84.491 1109 87 42 918 1992 632800474 632799417 0.000000e+00 1016.0
34 TraesCS7D01G426900 chr7B 81.126 1314 110 69 760 2010 569481707 569480469 0.000000e+00 926.0
35 TraesCS7D01G426900 chr7B 82.455 1100 103 46 916 1988 633001222 633002258 0.000000e+00 880.0
36 TraesCS7D01G426900 chr7B 91.042 480 22 9 2100 2564 569480436 569479963 1.840000e-176 628.0
37 TraesCS7D01G426900 chr7B 84.345 626 41 22 145 713 569440721 569440096 6.810000e-156 560.0
38 TraesCS7D01G426900 chr7B 88.100 479 32 15 2100 2564 591055725 591055258 1.910000e-151 545.0
39 TraesCS7D01G426900 chr7B 83.416 603 48 22 146 713 591565297 591565882 1.940000e-141 512.0
40 TraesCS7D01G426900 chr7B 87.119 427 16 8 1918 2343 260131988 260132376 5.540000e-122 448.0
41 TraesCS7D01G426900 chr7B 82.428 552 33 21 145 650 569482481 569481948 9.330000e-115 424.0
42 TraesCS7D01G426900 chr7B 87.243 243 19 9 2579 2817 591055113 591054879 1.660000e-67 267.0
43 TraesCS7D01G426900 chrUn 86.286 1349 81 41 745 2053 337590901 337589617 0.000000e+00 1371.0
44 TraesCS7D01G426900 chrUn 86.480 1176 82 32 760 1902 355335364 355334233 0.000000e+00 1219.0
45 TraesCS7D01G426900 chrUn 87.179 507 26 7 1927 2431 70734801 70735270 8.880000e-150 540.0
46 TraesCS7D01G426900 chrUn 83.582 603 47 20 146 713 355336121 355335536 4.160000e-143 518.0
47 TraesCS7D01G426900 chr4A 85.891 567 34 14 179 708 141909601 141909044 1.890000e-156 562.0
48 TraesCS7D01G426900 chr5D 87.549 506 23 7 1927 2431 86777889 86777423 1.480000e-152 549.0
49 TraesCS7D01G426900 chr5D 93.750 144 5 1 1 144 399817856 399817717 2.200000e-51 213.0
50 TraesCS7D01G426900 chr5D 97.000 100 2 1 1 100 399819049 399818951 1.740000e-37 167.0
51 TraesCS7D01G426900 chr3D 87.352 506 26 6 1927 2431 220219066 220218598 1.910000e-151 545.0
52 TraesCS7D01G426900 chr1D 83.607 610 55 17 145 710 110904577 110905185 5.340000e-147 531.0
53 TraesCS7D01G426900 chr6A 86.364 506 31 6 1927 2431 455872807 455872339 4.160000e-143 518.0
54 TraesCS7D01G426900 chr6B 83.224 608 52 23 145 710 694680382 694680981 1.940000e-141 512.0
55 TraesCS7D01G426900 chr6B 84.694 490 26 15 1864 2343 241431424 241431874 7.160000e-121 444.0
56 TraesCS7D01G426900 chr1B 85.156 512 34 11 1918 2424 550546661 550547135 1.170000e-133 486.0
57 TraesCS7D01G426900 chr4B 92.771 332 21 1 2100 2431 158048960 158048632 7.060000e-131 477.0
58 TraesCS7D01G426900 chr4B 80.952 525 56 22 223 710 527592882 527593399 2.650000e-100 375.0
59 TraesCS7D01G426900 chr4B 82.734 139 14 7 1864 1992 158049159 158049021 6.380000e-22 115.0
60 TraesCS7D01G426900 chr3B 84.929 491 26 13 1864 2344 289983931 289984383 1.190000e-123 453.0
61 TraesCS7D01G426900 chr3B 83.500 200 14 9 524 710 59891884 59891691 4.830000e-38 169.0
62 TraesCS7D01G426900 chr2B 86.651 427 20 8 1918 2343 107755918 107755528 3.330000e-119 438.0
63 TraesCS7D01G426900 chr2B 82.222 405 24 16 1864 2257 684004724 684004357 3.530000e-79 305.0
64 TraesCS7D01G426900 chr2B 83.516 91 5 1 524 604 113273197 113273107 3.010000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G426900 chr7D 548064857 548067673 2816 True 5203.000000 5203 100.000000 1 2817 1 chr7D.!!$R2 2816
1 TraesCS7D01G426900 chr7D 548560708 548561942 1234 False 1400.000000 1400 87.432000 760 2007 1 chr7D.!!$F2 1247
2 TraesCS7D01G426900 chr7D 548324183 548326918 2735 False 892.333333 1544 89.100000 146 2817 3 chr7D.!!$F6 2671
3 TraesCS7D01G426900 chr7D 548550359 548550958 599 False 593.000000 593 85.500000 146 710 1 chr7D.!!$F1 564
4 TraesCS7D01G426900 chr7D 530357948 530361587 3639 True 592.500000 942 86.354000 866 2817 2 chr7D.!!$R4 1951
5 TraesCS7D01G426900 chr7D 530431002 530431605 603 True 562.000000 562 84.488000 145 713 1 chr7D.!!$R1 568
6 TraesCS7D01G426900 chr7A 630670786 630673637 2851 False 1456.500000 2237 87.536000 144 2768 2 chr7A.!!$F4 2624
7 TraesCS7D01G426900 chr7A 617550728 617551970 1242 True 1419.000000 1419 87.156000 760 2060 1 chr7A.!!$R1 1300
8 TraesCS7D01G426900 chr7A 631651211 631653306 2095 True 999.000000 1430 85.913500 145 2060 2 chr7A.!!$R5 1915
9 TraesCS7D01G426900 chr7A 631871723 631872453 730 True 974.000000 974 91.108000 866 1579 1 chr7A.!!$R3 713
10 TraesCS7D01G426900 chr7A 632265489 632267002 1513 False 762.550000 1439 93.876000 605 2007 2 chr7A.!!$F6 1402
11 TraesCS7D01G426900 chr7A 632187180 632190484 3304 False 738.333333 1327 85.458333 144 2258 3 chr7A.!!$F5 2114
12 TraesCS7D01G426900 chr7A 631848731 631849533 802 True 662.000000 662 82.588000 1573 2349 1 chr7A.!!$R2 776
13 TraesCS7D01G426900 chr7A 663750117 663750713 596 True 604.000000 604 85.127000 918 1539 1 chr7A.!!$R4 621
14 TraesCS7D01G426900 chr7A 625641587 625642190 603 False 520.000000 520 83.306000 145 714 1 chr7A.!!$F1 569
15 TraesCS7D01G426900 chr7A 625674360 625674968 608 False 514.000000 514 83.115000 145 710 1 chr7A.!!$F2 565
16 TraesCS7D01G426900 chr7B 591684275 591685462 1187 False 1308.000000 1308 86.935000 745 1945 1 chr7B.!!$F3 1200
17 TraesCS7D01G426900 chr7B 591599761 591600781 1020 False 1286.000000 1286 89.469000 745 1782 1 chr7B.!!$F2 1037
18 TraesCS7D01G426900 chr7B 632799417 632800474 1057 True 1016.000000 1016 84.491000 918 1992 1 chr7B.!!$R2 1074
19 TraesCS7D01G426900 chr7B 591054879 591057628 2749 True 949.666667 2037 87.358667 146 2817 3 chr7B.!!$R4 2671
20 TraesCS7D01G426900 chr7B 591565297 591567331 2034 False 906.500000 1301 84.420000 146 2054 2 chr7B.!!$F5 1908
21 TraesCS7D01G426900 chr7B 633001222 633002258 1036 False 880.000000 880 82.455000 916 1988 1 chr7B.!!$F4 1072
22 TraesCS7D01G426900 chr7B 569479963 569482481 2518 True 659.333333 926 84.865333 145 2564 3 chr7B.!!$R3 2419
23 TraesCS7D01G426900 chr7B 569440096 569440721 625 True 560.000000 560 84.345000 145 713 1 chr7B.!!$R1 568
24 TraesCS7D01G426900 chrUn 337589617 337590901 1284 True 1371.000000 1371 86.286000 745 2053 1 chrUn.!!$R1 1308
25 TraesCS7D01G426900 chrUn 355334233 355336121 1888 True 868.500000 1219 85.031000 146 1902 2 chrUn.!!$R2 1756
26 TraesCS7D01G426900 chr4A 141909044 141909601 557 True 562.000000 562 85.891000 179 708 1 chr4A.!!$R1 529
27 TraesCS7D01G426900 chr1D 110904577 110905185 608 False 531.000000 531 83.607000 145 710 1 chr1D.!!$F1 565
28 TraesCS7D01G426900 chr6B 694680382 694680981 599 False 512.000000 512 83.224000 145 710 1 chr6B.!!$F2 565
29 TraesCS7D01G426900 chr4B 527592882 527593399 517 False 375.000000 375 80.952000 223 710 1 chr4B.!!$F1 487
30 TraesCS7D01G426900 chr4B 158048632 158049159 527 True 296.000000 477 87.752500 1864 2431 2 chr4B.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.027324 GCTGCAGCTAATTGACTCGC 59.973 55.0 31.33 0.0 38.21 5.03 F
128 129 0.034337 GACCGTACACACACCCACAT 59.966 55.0 0.00 0.0 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 2101 0.036388 TTCGCGGCTTCCATCTTCTT 60.036 50.000 6.13 0.0 0.0 2.52 R
2028 3594 1.134175 CACACCTTTCCCAACACACAC 59.866 52.381 0.00 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.123674 AAGTGCTCTAACGCGAAGG 57.876 52.632 15.93 1.30 0.00 3.46
19 20 0.601558 AAGTGCTCTAACGCGAAGGA 59.398 50.000 15.93 6.29 0.00 3.36
20 21 0.109226 AGTGCTCTAACGCGAAGGAC 60.109 55.000 15.93 15.33 0.00 3.85
21 22 1.154093 TGCTCTAACGCGAAGGACG 60.154 57.895 15.93 3.72 45.66 4.79
22 23 1.872679 GCTCTAACGCGAAGGACGG 60.873 63.158 15.93 3.11 42.83 4.79
23 24 1.872679 CTCTAACGCGAAGGACGGC 60.873 63.158 15.93 0.00 42.83 5.68
24 25 2.181021 CTAACGCGAAGGACGGCT 59.819 61.111 15.93 0.00 42.83 5.52
25 26 2.126228 TAACGCGAAGGACGGCTG 60.126 61.111 15.93 0.00 42.83 4.85
30 31 4.749310 CGAAGGACGGCTGCAGCT 62.749 66.667 35.82 19.70 41.70 4.24
31 32 2.579201 GAAGGACGGCTGCAGCTA 59.421 61.111 35.82 0.00 41.70 3.32
32 33 1.079127 GAAGGACGGCTGCAGCTAA 60.079 57.895 35.82 0.00 41.70 3.09
33 34 0.462759 GAAGGACGGCTGCAGCTAAT 60.463 55.000 35.82 22.23 41.70 1.73
34 35 0.035056 AAGGACGGCTGCAGCTAATT 60.035 50.000 35.82 20.69 41.70 1.40
35 36 0.745845 AGGACGGCTGCAGCTAATTG 60.746 55.000 35.82 22.26 41.70 2.32
36 37 0.744414 GGACGGCTGCAGCTAATTGA 60.744 55.000 35.82 0.00 41.70 2.57
37 38 0.375106 GACGGCTGCAGCTAATTGAC 59.625 55.000 35.82 17.72 41.70 3.18
38 39 0.036010 ACGGCTGCAGCTAATTGACT 60.036 50.000 35.82 8.63 41.70 3.41
39 40 0.654683 CGGCTGCAGCTAATTGACTC 59.345 55.000 35.82 16.27 41.70 3.36
40 41 0.654683 GGCTGCAGCTAATTGACTCG 59.345 55.000 35.82 0.00 41.70 4.18
41 42 0.027324 GCTGCAGCTAATTGACTCGC 59.973 55.000 31.33 0.00 38.21 5.03
42 43 1.649664 CTGCAGCTAATTGACTCGCT 58.350 50.000 0.00 0.00 0.00 4.93
43 44 2.814269 CTGCAGCTAATTGACTCGCTA 58.186 47.619 0.00 0.00 0.00 4.26
44 45 2.537625 CTGCAGCTAATTGACTCGCTAC 59.462 50.000 0.00 0.00 0.00 3.58
45 46 1.861575 GCAGCTAATTGACTCGCTACC 59.138 52.381 0.00 0.00 0.00 3.18
46 47 2.738643 GCAGCTAATTGACTCGCTACCA 60.739 50.000 0.00 0.00 0.00 3.25
47 48 3.119291 CAGCTAATTGACTCGCTACCAG 58.881 50.000 0.00 0.00 0.00 4.00
48 49 1.861575 GCTAATTGACTCGCTACCAGC 59.138 52.381 0.00 0.00 38.02 4.85
49 50 2.482142 GCTAATTGACTCGCTACCAGCT 60.482 50.000 0.00 0.00 39.60 4.24
50 51 3.243434 GCTAATTGACTCGCTACCAGCTA 60.243 47.826 0.00 0.00 39.60 3.32
51 52 3.887621 AATTGACTCGCTACCAGCTAA 57.112 42.857 0.00 0.00 39.60 3.09
52 53 2.649331 TTGACTCGCTACCAGCTAAC 57.351 50.000 0.00 0.00 39.60 2.34
53 54 1.835494 TGACTCGCTACCAGCTAACT 58.165 50.000 0.00 0.00 39.60 2.24
54 55 1.472878 TGACTCGCTACCAGCTAACTG 59.527 52.381 0.00 0.00 44.05 3.16
65 66 1.784525 AGCTAACTGAACTCACGCAC 58.215 50.000 0.00 0.00 0.00 5.34
66 67 0.435008 GCTAACTGAACTCACGCACG 59.565 55.000 0.00 0.00 0.00 5.34
67 68 0.435008 CTAACTGAACTCACGCACGC 59.565 55.000 0.00 0.00 0.00 5.34
68 69 0.942410 TAACTGAACTCACGCACGCC 60.942 55.000 0.00 0.00 0.00 5.68
69 70 3.414700 CTGAACTCACGCACGCCC 61.415 66.667 0.00 0.00 0.00 6.13
70 71 4.228567 TGAACTCACGCACGCCCA 62.229 61.111 0.00 0.00 0.00 5.36
71 72 2.742372 GAACTCACGCACGCCCAT 60.742 61.111 0.00 0.00 0.00 4.00
72 73 1.447140 GAACTCACGCACGCCCATA 60.447 57.895 0.00 0.00 0.00 2.74
73 74 1.693083 GAACTCACGCACGCCCATAC 61.693 60.000 0.00 0.00 0.00 2.39
74 75 3.254654 CTCACGCACGCCCATACG 61.255 66.667 0.00 0.00 39.50 3.06
102 103 4.918060 CACACACGCGCACACACG 62.918 66.667 5.73 0.00 0.00 4.49
120 121 3.101428 CGCCACGACCGTACACAC 61.101 66.667 0.00 0.00 0.00 3.82
121 122 2.027897 GCCACGACCGTACACACA 59.972 61.111 0.00 0.00 0.00 3.72
122 123 2.305127 GCCACGACCGTACACACAC 61.305 63.158 0.00 0.00 0.00 3.82
123 124 1.662446 CCACGACCGTACACACACC 60.662 63.158 0.00 0.00 0.00 4.16
124 125 1.662446 CACGACCGTACACACACCC 60.662 63.158 0.00 0.00 0.00 4.61
125 126 2.126596 ACGACCGTACACACACCCA 61.127 57.895 0.00 0.00 0.00 4.51
126 127 1.662446 CGACCGTACACACACCCAC 60.662 63.158 0.00 0.00 0.00 4.61
127 128 1.442567 GACCGTACACACACCCACA 59.557 57.895 0.00 0.00 0.00 4.17
128 129 0.034337 GACCGTACACACACCCACAT 59.966 55.000 0.00 0.00 0.00 3.21
129 130 0.250124 ACCGTACACACACCCACATG 60.250 55.000 0.00 0.00 0.00 3.21
130 131 0.953471 CCGTACACACACCCACATGG 60.953 60.000 0.00 0.00 41.37 3.66
131 132 1.573829 CGTACACACACCCACATGGC 61.574 60.000 0.00 0.00 37.83 4.40
132 133 0.250727 GTACACACACCCACATGGCT 60.251 55.000 0.00 0.00 37.83 4.75
133 134 0.476338 TACACACACCCACATGGCTT 59.524 50.000 0.00 0.00 37.83 4.35
134 135 0.476338 ACACACACCCACATGGCTTA 59.524 50.000 0.00 0.00 37.83 3.09
135 136 1.075374 ACACACACCCACATGGCTTAT 59.925 47.619 0.00 0.00 37.83 1.73
136 137 1.473677 CACACACCCACATGGCTTATG 59.526 52.381 0.00 0.84 42.68 1.90
137 138 1.105457 CACACCCACATGGCTTATGG 58.895 55.000 0.00 0.00 41.25 2.74
138 139 0.684153 ACACCCACATGGCTTATGGC 60.684 55.000 0.00 0.00 41.25 4.40
139 140 0.396139 CACCCACATGGCTTATGGCT 60.396 55.000 0.00 0.00 41.25 4.75
140 141 1.133823 CACCCACATGGCTTATGGCTA 60.134 52.381 0.00 0.00 41.25 3.93
141 142 1.568597 ACCCACATGGCTTATGGCTAA 59.431 47.619 0.00 0.00 41.25 3.09
142 143 1.956477 CCCACATGGCTTATGGCTAAC 59.044 52.381 0.00 0.00 41.25 2.34
365 386 1.299976 GGAAATGGCCAGACCGAGT 59.700 57.895 13.05 0.00 43.94 4.18
439 466 4.457496 CCTGTGGACGATGCCGCT 62.457 66.667 0.00 0.00 39.20 5.52
548 623 4.385405 AGGACGAGGCTGCACTGC 62.385 66.667 0.50 0.00 0.00 4.40
736 936 4.394712 CCCTTCCCGAGCAAGCGT 62.395 66.667 0.00 0.00 0.00 5.07
754 954 1.532090 CGTGTCAGCTCGTAGTGGATC 60.532 57.143 0.00 0.00 0.00 3.36
838 1228 0.452122 CGAAACGCGCTTCCGAATTT 60.452 50.000 16.01 1.68 36.29 1.82
851 1270 1.656652 CGAATTTGATCGGGAGTGCT 58.343 50.000 0.00 0.00 39.12 4.40
1044 1494 1.373748 GAACACCTTCTACGGCGCA 60.374 57.895 10.83 0.00 0.00 6.09
1233 1683 3.934391 GACGCTCAGGGTGGTTCCG 62.934 68.421 0.00 0.00 37.00 4.30
1416 1893 3.243771 TGAAGAAGAAGGTGGAGAACGTC 60.244 47.826 0.00 0.00 0.00 4.34
1479 1971 1.144969 GCGTTGATCCTGACGTGAAA 58.855 50.000 0.00 0.00 41.10 2.69
1489 1981 0.850217 TGACGTGAAAACGAAGCGAG 59.150 50.000 5.12 0.00 36.85 5.03
1820 2351 6.620877 TTAGGGCTCTAGTCAAGAAAATCA 57.379 37.500 0.00 0.00 32.46 2.57
1903 2540 6.253727 GCATACTGTAGTTGTAAGTAGCACTG 59.746 42.308 0.00 0.00 30.35 3.66
1965 3528 6.471976 TCGAAAGATGTTGATGAACTGAAG 57.528 37.500 0.00 0.00 31.29 3.02
1971 3534 5.944599 AGATGTTGATGAACTGAAGCAAGAT 59.055 36.000 0.00 0.00 32.79 2.40
1974 3537 7.509141 TGTTGATGAACTGAAGCAAGATTTA 57.491 32.000 0.00 0.00 32.79 1.40
2031 3597 5.666969 TCGAAAGAAATTGATCGTTGTGT 57.333 34.783 0.00 0.00 37.03 3.72
2057 3625 1.021968 GGAAAGGTGTGTTTGCGTCT 58.978 50.000 0.00 0.00 0.00 4.18
2083 3694 5.595952 AGTCTCTCCTTTTGCAATTTTGAGT 59.404 36.000 0.00 0.00 0.00 3.41
2084 3695 6.097412 AGTCTCTCCTTTTGCAATTTTGAGTT 59.903 34.615 0.00 0.00 0.00 3.01
2085 3696 6.758416 GTCTCTCCTTTTGCAATTTTGAGTTT 59.242 34.615 0.00 0.00 0.00 2.66
2086 3697 6.980397 TCTCTCCTTTTGCAATTTTGAGTTTC 59.020 34.615 0.00 0.00 0.00 2.78
2087 3698 6.877236 TCTCCTTTTGCAATTTTGAGTTTCT 58.123 32.000 0.00 0.00 0.00 2.52
2088 3699 6.980397 TCTCCTTTTGCAATTTTGAGTTTCTC 59.020 34.615 0.00 0.00 0.00 2.87
2089 3700 6.638610 TCCTTTTGCAATTTTGAGTTTCTCA 58.361 32.000 0.00 0.00 38.87 3.27
2090 3701 7.274447 TCCTTTTGCAATTTTGAGTTTCTCAT 58.726 30.769 0.00 0.00 40.39 2.90
2091 3702 7.225145 TCCTTTTGCAATTTTGAGTTTCTCATG 59.775 33.333 0.00 0.00 40.39 3.07
2092 3703 5.910637 TTGCAATTTTGAGTTTCTCATGC 57.089 34.783 12.96 12.96 40.80 4.06
2093 3704 5.204409 TGCAATTTTGAGTTTCTCATGCT 57.796 34.783 17.69 0.00 40.93 3.79
2094 3705 5.603596 TGCAATTTTGAGTTTCTCATGCTT 58.396 33.333 17.69 4.53 40.93 3.91
2095 3706 5.464057 TGCAATTTTGAGTTTCTCATGCTTG 59.536 36.000 17.69 13.37 40.93 4.01
2096 3707 5.107220 GCAATTTTGAGTTTCTCATGCTTGG 60.107 40.000 12.71 0.00 40.39 3.61
2097 3708 6.218019 CAATTTTGAGTTTCTCATGCTTGGA 58.782 36.000 0.00 0.00 40.39 3.53
2098 3709 5.850557 TTTTGAGTTTCTCATGCTTGGAA 57.149 34.783 0.00 0.29 40.39 3.53
2099 3710 6.409524 TTTTGAGTTTCTCATGCTTGGAAT 57.590 33.333 0.00 0.00 40.39 3.01
2100 3711 6.409524 TTTGAGTTTCTCATGCTTGGAATT 57.590 33.333 0.00 0.00 40.39 2.17
2101 3712 5.381174 TGAGTTTCTCATGCTTGGAATTG 57.619 39.130 0.00 0.00 35.39 2.32
2102 3713 5.072055 TGAGTTTCTCATGCTTGGAATTGA 58.928 37.500 0.00 0.00 35.39 2.57
2103 3714 5.182570 TGAGTTTCTCATGCTTGGAATTGAG 59.817 40.000 0.00 0.00 35.39 3.02
2104 3715 5.075493 AGTTTCTCATGCTTGGAATTGAGT 58.925 37.500 0.00 0.00 37.46 3.41
2184 3820 5.534207 AATGTTCAGATTTGCAGTCCAAA 57.466 34.783 0.00 0.00 46.64 3.28
2327 3964 1.337703 TGCAAGTTGGATTGTGCTCAC 59.662 47.619 4.75 0.00 37.87 3.51
2462 5941 0.248377 GCTCGTGCCATCTTTCATGC 60.248 55.000 0.00 0.00 0.00 4.06
2467 5946 2.477357 CGTGCCATCTTTCATGCAGAAG 60.477 50.000 0.00 0.00 37.57 2.85
2468 5947 2.490903 GTGCCATCTTTCATGCAGAAGT 59.509 45.455 0.00 0.00 37.57 3.01
2469 5948 3.691118 GTGCCATCTTTCATGCAGAAGTA 59.309 43.478 0.00 0.00 37.57 2.24
2593 6205 8.421002 TGATTCAGTATTTCAGTTCATATCCGA 58.579 33.333 0.00 0.00 0.00 4.55
2654 6268 2.163818 TAAACAAGGGCACAGAGACG 57.836 50.000 0.00 0.00 0.00 4.18
2689 6304 3.944015 CTCTGCCCTTTCTATCACCAAAG 59.056 47.826 0.00 0.00 0.00 2.77
2783 6398 2.951229 AGGACCAAACAGTTACTGGG 57.049 50.000 17.21 10.58 35.51 4.45
2784 6399 2.414612 AGGACCAAACAGTTACTGGGA 58.585 47.619 17.21 0.00 35.51 4.37
2785 6400 2.986728 AGGACCAAACAGTTACTGGGAT 59.013 45.455 17.21 0.00 35.51 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.601558 TCCTTCGCGTTAGAGCACTT 59.398 50.000 5.77 0.00 36.85 3.16
1 2 0.109226 GTCCTTCGCGTTAGAGCACT 60.109 55.000 5.77 0.00 36.85 4.40
2 3 1.403972 CGTCCTTCGCGTTAGAGCAC 61.404 60.000 5.77 0.00 36.85 4.40
3 4 1.154093 CGTCCTTCGCGTTAGAGCA 60.154 57.895 5.77 0.00 36.85 4.26
4 5 1.872679 CCGTCCTTCGCGTTAGAGC 60.873 63.158 5.77 1.02 38.35 4.09
5 6 1.872679 GCCGTCCTTCGCGTTAGAG 60.873 63.158 5.77 0.08 38.35 2.43
6 7 2.180017 GCCGTCCTTCGCGTTAGA 59.820 61.111 5.77 0.00 38.35 2.10
7 8 2.158959 CAGCCGTCCTTCGCGTTAG 61.159 63.158 5.77 4.92 38.35 2.34
8 9 2.126228 CAGCCGTCCTTCGCGTTA 60.126 61.111 5.77 0.00 38.35 3.18
13 14 2.835701 TTAGCTGCAGCCGTCCTTCG 62.836 60.000 34.39 0.00 43.38 3.79
14 15 0.462759 ATTAGCTGCAGCCGTCCTTC 60.463 55.000 34.39 5.26 43.38 3.46
15 16 0.035056 AATTAGCTGCAGCCGTCCTT 60.035 50.000 34.39 17.78 43.38 3.36
16 17 0.745845 CAATTAGCTGCAGCCGTCCT 60.746 55.000 34.39 18.55 43.38 3.85
17 18 0.744414 TCAATTAGCTGCAGCCGTCC 60.744 55.000 34.39 7.70 43.38 4.79
18 19 0.375106 GTCAATTAGCTGCAGCCGTC 59.625 55.000 34.39 14.30 43.38 4.79
19 20 0.036010 AGTCAATTAGCTGCAGCCGT 60.036 50.000 34.39 20.12 43.38 5.68
20 21 0.654683 GAGTCAATTAGCTGCAGCCG 59.345 55.000 34.39 17.79 43.38 5.52
21 22 0.654683 CGAGTCAATTAGCTGCAGCC 59.345 55.000 34.39 17.41 43.38 4.85
22 23 0.027324 GCGAGTCAATTAGCTGCAGC 59.973 55.000 31.53 31.53 42.49 5.25
23 24 1.649664 AGCGAGTCAATTAGCTGCAG 58.350 50.000 10.11 10.11 38.67 4.41
24 25 2.540515 GTAGCGAGTCAATTAGCTGCA 58.459 47.619 1.02 0.00 41.00 4.41
25 26 1.861575 GGTAGCGAGTCAATTAGCTGC 59.138 52.381 0.00 0.00 40.51 5.25
26 27 3.119291 CTGGTAGCGAGTCAATTAGCTG 58.881 50.000 0.00 0.00 40.51 4.24
27 28 2.482142 GCTGGTAGCGAGTCAATTAGCT 60.482 50.000 0.00 0.00 43.07 3.32
28 29 1.861575 GCTGGTAGCGAGTCAATTAGC 59.138 52.381 0.00 0.00 0.00 3.09
40 41 3.254892 GTGAGTTCAGTTAGCTGGTAGC 58.745 50.000 6.75 0.00 42.78 3.58
41 42 3.502920 CGTGAGTTCAGTTAGCTGGTAG 58.497 50.000 6.75 0.00 42.78 3.18
42 43 2.352421 GCGTGAGTTCAGTTAGCTGGTA 60.352 50.000 6.75 0.00 42.78 3.25
43 44 1.605712 GCGTGAGTTCAGTTAGCTGGT 60.606 52.381 6.75 0.00 42.78 4.00
44 45 1.071605 GCGTGAGTTCAGTTAGCTGG 58.928 55.000 6.75 0.00 42.78 4.85
45 46 1.457303 GTGCGTGAGTTCAGTTAGCTG 59.543 52.381 0.00 0.00 43.87 4.24
46 47 1.784525 GTGCGTGAGTTCAGTTAGCT 58.215 50.000 0.00 0.00 0.00 3.32
47 48 0.435008 CGTGCGTGAGTTCAGTTAGC 59.565 55.000 0.00 0.00 0.00 3.09
48 49 0.435008 GCGTGCGTGAGTTCAGTTAG 59.565 55.000 0.00 0.00 0.00 2.34
49 50 0.942410 GGCGTGCGTGAGTTCAGTTA 60.942 55.000 0.00 0.00 0.00 2.24
50 51 2.244651 GGCGTGCGTGAGTTCAGTT 61.245 57.895 0.00 0.00 0.00 3.16
51 52 2.661866 GGCGTGCGTGAGTTCAGT 60.662 61.111 0.00 0.00 0.00 3.41
52 53 3.414700 GGGCGTGCGTGAGTTCAG 61.415 66.667 0.00 0.00 0.00 3.02
53 54 2.161078 TATGGGCGTGCGTGAGTTCA 62.161 55.000 0.00 0.00 0.00 3.18
54 55 1.447140 TATGGGCGTGCGTGAGTTC 60.447 57.895 0.00 0.00 0.00 3.01
55 56 1.740296 GTATGGGCGTGCGTGAGTT 60.740 57.895 0.00 0.00 0.00 3.01
56 57 2.125673 GTATGGGCGTGCGTGAGT 60.126 61.111 0.00 0.00 0.00 3.41
57 58 3.254654 CGTATGGGCGTGCGTGAG 61.255 66.667 0.00 0.00 0.00 3.51
85 86 4.918060 CGTGTGTGCGCGTGTGTG 62.918 66.667 8.43 0.00 42.94 3.82
103 104 3.101428 GTGTGTACGGTCGTGGCG 61.101 66.667 6.25 0.00 0.00 5.69
104 105 2.027897 TGTGTGTACGGTCGTGGC 59.972 61.111 6.25 0.18 0.00 5.01
105 106 1.662446 GGTGTGTGTACGGTCGTGG 60.662 63.158 6.25 0.00 0.00 4.94
106 107 1.662446 GGGTGTGTGTACGGTCGTG 60.662 63.158 6.25 0.00 0.00 4.35
107 108 2.126596 TGGGTGTGTGTACGGTCGT 61.127 57.895 0.69 0.69 0.00 4.34
108 109 1.662446 GTGGGTGTGTGTACGGTCG 60.662 63.158 0.00 0.00 0.00 4.79
109 110 0.034337 ATGTGGGTGTGTGTACGGTC 59.966 55.000 0.00 0.00 0.00 4.79
110 111 0.250124 CATGTGGGTGTGTGTACGGT 60.250 55.000 0.00 0.00 0.00 4.83
111 112 0.953471 CCATGTGGGTGTGTGTACGG 60.953 60.000 0.00 0.00 0.00 4.02
112 113 1.573829 GCCATGTGGGTGTGTGTACG 61.574 60.000 0.54 0.00 39.65 3.67
113 114 0.250727 AGCCATGTGGGTGTGTGTAC 60.251 55.000 2.42 0.00 45.50 2.90
114 115 0.476338 AAGCCATGTGGGTGTGTGTA 59.524 50.000 4.26 0.00 46.73 2.90
115 116 0.476338 TAAGCCATGTGGGTGTGTGT 59.524 50.000 4.26 0.00 46.73 3.72
116 117 1.473677 CATAAGCCATGTGGGTGTGTG 59.526 52.381 4.26 1.11 46.73 3.82
117 118 1.616725 CCATAAGCCATGTGGGTGTGT 60.617 52.381 4.26 0.00 46.73 3.72
118 119 1.105457 CCATAAGCCATGTGGGTGTG 58.895 55.000 4.26 7.12 46.73 3.82
119 120 0.684153 GCCATAAGCCATGTGGGTGT 60.684 55.000 4.26 0.00 46.73 4.16
120 121 2.118132 GCCATAAGCCATGTGGGTG 58.882 57.895 4.26 0.00 46.73 4.61
122 123 1.956477 GTTAGCCATAAGCCATGTGGG 59.044 52.381 0.54 0.00 45.47 4.61
123 124 2.358898 GTGTTAGCCATAAGCCATGTGG 59.641 50.000 0.00 0.00 45.47 4.17
124 125 2.358898 GGTGTTAGCCATAAGCCATGTG 59.641 50.000 0.00 0.00 45.47 3.21
125 126 2.654863 GGTGTTAGCCATAAGCCATGT 58.345 47.619 0.00 0.00 45.47 3.21
126 127 1.603802 CGGTGTTAGCCATAAGCCATG 59.396 52.381 0.00 0.00 45.47 3.66
127 128 1.488812 TCGGTGTTAGCCATAAGCCAT 59.511 47.619 0.00 0.00 45.47 4.40
128 129 0.906066 TCGGTGTTAGCCATAAGCCA 59.094 50.000 0.00 0.00 45.47 4.75
129 130 1.583054 CTCGGTGTTAGCCATAAGCC 58.417 55.000 0.00 0.00 45.47 4.35
130 131 0.938008 GCTCGGTGTTAGCCATAAGC 59.062 55.000 0.00 0.00 44.25 3.09
131 132 1.933853 GTGCTCGGTGTTAGCCATAAG 59.066 52.381 0.00 0.00 39.30 1.73
132 133 1.737696 CGTGCTCGGTGTTAGCCATAA 60.738 52.381 0.00 0.00 39.30 1.90
133 134 0.179121 CGTGCTCGGTGTTAGCCATA 60.179 55.000 0.00 0.00 39.30 2.74
134 135 1.447838 CGTGCTCGGTGTTAGCCAT 60.448 57.895 0.00 0.00 39.30 4.40
135 136 2.048597 CGTGCTCGGTGTTAGCCA 60.049 61.111 0.00 0.00 39.30 4.75
136 137 3.488090 GCGTGCTCGGTGTTAGCC 61.488 66.667 10.52 0.00 39.30 3.93
137 138 3.838795 CGCGTGCTCGGTGTTAGC 61.839 66.667 10.52 0.00 40.50 3.09
138 139 3.179265 CCGCGTGCTCGGTGTTAG 61.179 66.667 10.52 0.00 44.18 2.34
156 157 2.302260 CGACCAGCTCCTGAGAATCTA 58.698 52.381 0.00 0.00 34.92 1.98
359 375 3.513912 TGGTGAAGATATGTGAACTCGGT 59.486 43.478 0.00 0.00 0.00 4.69
365 386 2.627945 GGCGTGGTGAAGATATGTGAA 58.372 47.619 0.00 0.00 0.00 3.18
439 466 2.892640 CCGGGAGAATGCACGAGA 59.107 61.111 0.00 0.00 0.00 4.04
522 566 4.135153 CCTCGTCCTGGAGCACGG 62.135 72.222 0.00 0.00 36.64 4.94
736 936 0.733150 CGATCCACTACGAGCTGACA 59.267 55.000 0.00 0.00 0.00 3.58
838 1228 2.895680 GAGCAGCACTCCCGATCA 59.104 61.111 0.00 0.00 39.75 2.92
850 1269 3.177920 GTGACGCGAGCAGAGCAG 61.178 66.667 15.93 0.00 34.19 4.24
851 1270 4.724602 GGTGACGCGAGCAGAGCA 62.725 66.667 15.93 0.00 34.19 4.26
1031 1481 1.226859 TCGAATGCGCCGTAGAAGG 60.227 57.895 4.18 0.00 37.46 3.46
1044 1494 2.264794 GCGTCCACTGGGTCGAAT 59.735 61.111 14.62 0.00 46.67 3.34
1479 1971 1.374758 CTTGGGAGCTCGCTTCGTT 60.375 57.895 28.52 0.00 0.00 3.85
1489 1981 2.586357 GCCGACGATCTTGGGAGC 60.586 66.667 4.31 0.00 0.00 4.70
1593 2091 2.179427 TCCATCTTCTTCTCCGAGCAA 58.821 47.619 0.00 0.00 0.00 3.91
1603 2101 0.036388 TTCGCGGCTTCCATCTTCTT 60.036 50.000 6.13 0.00 0.00 2.52
1693 2194 2.890109 GCTGCATCATCTTCGGCGG 61.890 63.158 7.21 0.00 35.76 6.13
1698 2199 2.890109 CGCCGGCTGCATCATCTTC 61.890 63.158 26.68 0.00 41.33 2.87
1820 2351 7.735326 ATAAGTGACCAGGACACTAGTTATT 57.265 36.000 22.83 10.28 46.01 1.40
1924 3461 4.122143 TCGATCACATACAGAACATGCA 57.878 40.909 0.00 0.00 0.00 3.96
1950 3511 6.395426 AAATCTTGCTTCAGTTCATCAACA 57.605 33.333 0.00 0.00 34.60 3.33
2010 3576 5.113975 CACACACAACGATCAATTTCTTTCG 59.886 40.000 0.00 0.00 37.60 3.46
2027 3593 1.272203 ACACCTTTCCCAACACACACA 60.272 47.619 0.00 0.00 0.00 3.72
2028 3594 1.134175 CACACCTTTCCCAACACACAC 59.866 52.381 0.00 0.00 0.00 3.82
2029 3595 1.272203 ACACACCTTTCCCAACACACA 60.272 47.619 0.00 0.00 0.00 3.72
2030 3596 1.470051 ACACACCTTTCCCAACACAC 58.530 50.000 0.00 0.00 0.00 3.82
2031 3597 2.223803 AACACACCTTTCCCAACACA 57.776 45.000 0.00 0.00 0.00 3.72
2057 3625 5.593909 TCAAAATTGCAAAAGGAGAGACTCA 59.406 36.000 1.71 0.00 31.08 3.41
2083 3694 6.266103 AGAAACTCAATTCCAAGCATGAGAAA 59.734 34.615 8.48 0.00 41.38 2.52
2084 3695 5.771666 AGAAACTCAATTCCAAGCATGAGAA 59.228 36.000 8.48 0.00 41.38 2.87
2085 3696 5.319453 AGAAACTCAATTCCAAGCATGAGA 58.681 37.500 8.48 0.00 41.38 3.27
2086 3697 5.182570 TGAGAAACTCAATTCCAAGCATGAG 59.817 40.000 0.00 0.00 43.79 2.90
2087 3698 5.072055 TGAGAAACTCAATTCCAAGCATGA 58.928 37.500 0.00 0.00 37.57 3.07
2088 3699 5.381174 TGAGAAACTCAATTCCAAGCATG 57.619 39.130 0.00 0.00 37.57 4.06
2089 3700 5.479375 ACATGAGAAACTCAATTCCAAGCAT 59.521 36.000 0.00 0.00 44.04 3.79
2090 3701 4.828939 ACATGAGAAACTCAATTCCAAGCA 59.171 37.500 0.00 0.00 44.04 3.91
2091 3702 5.382618 ACATGAGAAACTCAATTCCAAGC 57.617 39.130 0.00 0.00 44.04 4.01
2092 3703 5.474532 TGGACATGAGAAACTCAATTCCAAG 59.525 40.000 21.62 6.10 44.87 3.61
2093 3704 5.384336 TGGACATGAGAAACTCAATTCCAA 58.616 37.500 21.62 12.04 44.87 3.53
2094 3705 4.984295 TGGACATGAGAAACTCAATTCCA 58.016 39.130 20.74 20.74 45.25 3.53
2095 3706 5.416952 ACATGGACATGAGAAACTCAATTCC 59.583 40.000 18.38 17.62 44.04 3.01
2096 3707 6.506500 ACATGGACATGAGAAACTCAATTC 57.493 37.500 18.38 5.31 44.04 2.17
2097 3708 6.491062 TGAACATGGACATGAGAAACTCAATT 59.509 34.615 18.38 0.00 44.04 2.32
2098 3709 6.005823 TGAACATGGACATGAGAAACTCAAT 58.994 36.000 18.38 0.00 44.04 2.57
2099 3710 5.375773 TGAACATGGACATGAGAAACTCAA 58.624 37.500 18.38 0.00 44.04 3.02
2100 3711 4.971939 TGAACATGGACATGAGAAACTCA 58.028 39.130 18.38 3.95 44.99 3.41
2101 3712 5.121454 GTCTGAACATGGACATGAGAAACTC 59.879 44.000 18.38 6.01 41.20 3.01
2102 3713 4.999950 GTCTGAACATGGACATGAGAAACT 59.000 41.667 18.38 0.00 41.20 2.66
2103 3714 4.999950 AGTCTGAACATGGACATGAGAAAC 59.000 41.667 18.38 9.46 41.20 2.78
2104 3715 5.233083 AGTCTGAACATGGACATGAGAAA 57.767 39.130 18.38 1.48 41.20 2.52
2184 3820 6.956202 TTTTGGTTGAATTCCAATTGCAAT 57.044 29.167 5.99 5.99 43.25 3.56
2327 3964 1.472082 TGCTTTGTATGCAATCGGTGG 59.528 47.619 0.00 0.00 37.51 4.61
2365 4030 7.007723 TCCCTATAAACAGAAGAAGGCAAAAA 58.992 34.615 0.00 0.00 0.00 1.94
2462 5941 9.666626 CGAGGACTGTAAATATTACTACTTCTG 57.333 37.037 2.35 0.00 0.00 3.02
2467 5946 8.638685 TTTGCGAGGACTGTAAATATTACTAC 57.361 34.615 0.00 0.00 0.00 2.73
2468 5947 9.656040 TTTTTGCGAGGACTGTAAATATTACTA 57.344 29.630 0.00 0.00 0.00 1.82
2469 5948 8.556213 TTTTTGCGAGGACTGTAAATATTACT 57.444 30.769 0.00 0.00 0.00 2.24
2519 6001 3.315191 CACGCCATGTATAAAAGGGGAAG 59.685 47.826 8.14 0.00 37.50 3.46
2564 6046 9.553064 GATATGAACTGAAATACTGAATCAGGT 57.447 33.333 15.38 3.13 43.53 4.00
2593 6205 2.902486 TGATGACTGCTCTCTTGGTCTT 59.098 45.455 0.00 0.00 0.00 3.01
2654 6268 1.811679 GCAGAGAAGGTGCGTAGGC 60.812 63.158 0.00 0.00 40.52 3.93
2689 6304 0.252197 AGTTCAGGTATTGCGGACCC 59.748 55.000 0.00 0.00 37.73 4.46
2769 6384 3.696051 CCCATCATCCCAGTAACTGTTTG 59.304 47.826 0.00 0.00 0.00 2.93
2783 6398 3.548770 TGATGAGTGAAAGCCCATCATC 58.451 45.455 6.55 6.55 44.15 2.92
2784 6399 3.053842 ACTGATGAGTGAAAGCCCATCAT 60.054 43.478 0.00 0.00 42.79 2.45
2785 6400 2.306805 ACTGATGAGTGAAAGCCCATCA 59.693 45.455 0.00 0.00 41.90 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.