Multiple sequence alignment - TraesCS7D01G426500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G426500 chr7D 100.000 2609 0 0 1 2609 547297064 547294456 0.000000e+00 4819.0
1 TraesCS7D01G426500 chr7D 89.607 1222 111 12 707 1916 546259366 546260583 0.000000e+00 1539.0
2 TraesCS7D01G426500 chr7D 80.367 708 98 19 487 1178 547296164 547295482 1.390000e-137 499.0
3 TraesCS7D01G426500 chr7D 80.367 708 98 19 901 1583 547296578 547295887 1.390000e-137 499.0
4 TraesCS7D01G426500 chr7D 84.583 480 62 5 1116 1586 546259373 546259849 1.410000e-127 466.0
5 TraesCS7D01G426500 chr7D 90.390 333 29 3 317 649 546259039 546259368 3.990000e-118 435.0
6 TraesCS7D01G426500 chr7D 77.411 757 122 27 438 1175 546259523 546260249 3.130000e-109 405.0
7 TraesCS7D01G426500 chr7B 88.964 1785 142 25 317 2074 590186300 590188056 0.000000e+00 2154.0
8 TraesCS7D01G426500 chr7B 81.601 712 106 13 902 1592 590186471 590187178 1.360000e-157 566.0
9 TraesCS7D01G426500 chr7B 79.209 784 110 23 438 1197 590186843 590187597 1.800000e-136 496.0
10 TraesCS7D01G426500 chr7B 87.179 351 18 10 2259 2609 590190277 590190600 8.820000e-100 374.0
11 TraesCS7D01G426500 chr7A 85.862 1160 91 32 1452 2609 628980141 628981229 0.000000e+00 1166.0
12 TraesCS7D01G426500 chr7A 87.972 848 74 10 642 1461 628972355 628973202 0.000000e+00 976.0
13 TraesCS7D01G426500 chr7A 85.545 505 60 4 1097 1592 628972413 628972913 1.380000e-142 516.0
14 TraesCS7D01G426500 chr7A 91.018 334 30 0 317 650 628971994 628972327 3.960000e-123 451.0
15 TraesCS7D01G426500 chr7A 75.804 653 96 27 438 1056 628972578 628973202 9.200000e-70 274.0
16 TraesCS7D01G426500 chr7A 92.424 132 10 0 1047 1178 628980141 628980272 3.430000e-44 189.0
17 TraesCS7D01G426500 chr5D 82.727 110 14 4 1532 1640 449851108 449851003 2.760000e-15 93.5
18 TraesCS7D01G426500 chr5D 88.136 59 5 2 1118 1175 449851117 449851060 4.660000e-08 69.4
19 TraesCS7D01G426500 chr5D 89.130 46 5 0 1136 1181 449653665 449653620 1.010000e-04 58.4
20 TraesCS7D01G426500 chr5B 81.250 112 12 7 1532 1640 549673576 549673471 5.980000e-12 82.4
21 TraesCS7D01G426500 chr5B 83.784 74 10 2 1118 1190 549673585 549673513 4.660000e-08 69.4
22 TraesCS7D01G426500 chr6D 96.970 33 0 1 1958 1989 443294290 443294258 1.000000e-03 54.7
23 TraesCS7D01G426500 chr2A 96.970 33 0 1 1958 1989 638395972 638395940 1.000000e-03 54.7
24 TraesCS7D01G426500 chr1A 96.875 32 0 1 1958 1988 249274881 249274912 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G426500 chr7D 547294456 547297064 2608 True 1939.00 4819 86.911333 1 2609 3 chr7D.!!$R1 2608
1 TraesCS7D01G426500 chr7D 546259039 546260583 1544 False 711.25 1539 85.497750 317 1916 4 chr7D.!!$F1 1599
2 TraesCS7D01G426500 chr7B 590186300 590190600 4300 False 897.50 2154 84.238250 317 2609 4 chr7B.!!$F1 2292
3 TraesCS7D01G426500 chr7A 628980141 628981229 1088 False 677.50 1166 89.143000 1047 2609 2 chr7A.!!$F2 1562
4 TraesCS7D01G426500 chr7A 628971994 628973202 1208 False 554.25 976 85.084750 317 1592 4 chr7A.!!$F1 1275

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.042131 AATACCCAGGACGTCCCTCA 59.958 55.0 30.82 12.35 45.6 3.86 F
82 83 0.042131 ATACCCAGGACGTCCCTCAA 59.958 55.0 30.82 13.43 45.6 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1233 1343 0.036164 CAACAACATGACGGGGAGGA 59.964 55.0 0.00 0.00 0.00 3.71 R
2062 2204 0.107312 ACTGATGGAGCATGCAGGTC 60.107 55.0 21.98 8.78 42.42 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.672673 CCTGAAATCCATCTCTTCTTAAGTTAA 57.327 33.333 1.63 0.00 0.00 2.01
32 33 9.732130 ATCCATCTCTTCTTAAGTTAATATGCC 57.268 33.333 1.63 0.00 0.00 4.40
33 34 8.157476 TCCATCTCTTCTTAAGTTAATATGCCC 58.843 37.037 1.63 0.00 0.00 5.36
34 35 7.939039 CCATCTCTTCTTAAGTTAATATGCCCA 59.061 37.037 1.63 0.00 0.00 5.36
35 36 9.342308 CATCTCTTCTTAAGTTAATATGCCCAA 57.658 33.333 1.63 0.00 0.00 4.12
36 37 9.920946 ATCTCTTCTTAAGTTAATATGCCCAAA 57.079 29.630 1.63 0.00 0.00 3.28
37 38 9.396022 TCTCTTCTTAAGTTAATATGCCCAAAG 57.604 33.333 1.63 0.00 0.00 2.77
38 39 9.178758 CTCTTCTTAAGTTAATATGCCCAAAGT 57.821 33.333 1.63 0.00 0.00 2.66
39 40 9.174166 TCTTCTTAAGTTAATATGCCCAAAGTC 57.826 33.333 1.63 0.00 0.00 3.01
40 41 7.875327 TCTTAAGTTAATATGCCCAAAGTCC 57.125 36.000 1.63 0.00 0.00 3.85
41 42 6.831868 TCTTAAGTTAATATGCCCAAAGTCCC 59.168 38.462 1.63 0.00 0.00 4.46
42 43 3.551846 AGTTAATATGCCCAAAGTCCCG 58.448 45.455 0.00 0.00 0.00 5.14
43 44 2.621526 GTTAATATGCCCAAAGTCCCGG 59.378 50.000 0.00 0.00 0.00 5.73
44 45 0.106217 AATATGCCCAAAGTCCCGGG 60.106 55.000 16.85 16.85 46.15 5.73
45 46 0.991355 ATATGCCCAAAGTCCCGGGA 60.991 55.000 22.63 22.63 46.34 5.14
46 47 0.991355 TATGCCCAAAGTCCCGGGAT 60.991 55.000 29.73 9.12 46.34 3.85
47 48 2.124278 GCCCAAAGTCCCGGGATC 60.124 66.667 29.73 20.13 46.34 3.36
48 49 2.978946 GCCCAAAGTCCCGGGATCA 61.979 63.158 29.73 0.00 46.34 2.92
49 50 1.922821 CCCAAAGTCCCGGGATCAT 59.077 57.895 29.73 13.63 46.34 2.45
50 51 0.179018 CCCAAAGTCCCGGGATCATC 60.179 60.000 29.73 14.30 46.34 2.92
51 52 0.179018 CCAAAGTCCCGGGATCATCC 60.179 60.000 29.73 13.86 35.23 3.51
52 53 0.839946 CAAAGTCCCGGGATCATCCT 59.160 55.000 29.73 16.28 36.57 3.24
53 54 1.212935 CAAAGTCCCGGGATCATCCTT 59.787 52.381 29.73 21.58 36.57 3.36
54 55 1.132500 AAGTCCCGGGATCATCCTTC 58.868 55.000 29.73 11.30 36.57 3.46
55 56 0.266152 AGTCCCGGGATCATCCTTCT 59.734 55.000 29.73 13.76 36.57 2.85
56 57 1.132500 GTCCCGGGATCATCCTTCTT 58.868 55.000 29.73 0.00 36.57 2.52
57 58 1.490910 GTCCCGGGATCATCCTTCTTT 59.509 52.381 29.73 0.00 36.57 2.52
58 59 1.768870 TCCCGGGATCATCCTTCTTTC 59.231 52.381 22.63 0.00 36.57 2.62
59 60 1.490490 CCCGGGATCATCCTTCTTTCA 59.510 52.381 18.48 0.00 36.57 2.69
60 61 2.486191 CCCGGGATCATCCTTCTTTCAG 60.486 54.545 18.48 0.00 36.57 3.02
61 62 2.435805 CCGGGATCATCCTTCTTTCAGA 59.564 50.000 2.93 0.00 36.57 3.27
62 63 3.118261 CCGGGATCATCCTTCTTTCAGAA 60.118 47.826 2.93 0.00 36.57 3.02
63 64 4.517285 CGGGATCATCCTTCTTTCAGAAA 58.483 43.478 2.93 0.00 36.57 2.52
64 65 5.128919 CGGGATCATCCTTCTTTCAGAAAT 58.871 41.667 2.93 0.00 36.57 2.17
65 66 6.291377 CGGGATCATCCTTCTTTCAGAAATA 58.709 40.000 2.93 0.00 36.57 1.40
66 67 6.203723 CGGGATCATCCTTCTTTCAGAAATAC 59.796 42.308 2.93 0.00 36.57 1.89
67 68 6.488344 GGGATCATCCTTCTTTCAGAAATACC 59.512 42.308 2.93 0.00 36.57 2.73
68 69 6.488344 GGATCATCCTTCTTTCAGAAATACCC 59.512 42.308 0.00 0.00 33.19 3.69
69 70 6.387192 TCATCCTTCTTTCAGAAATACCCA 57.613 37.500 0.00 0.00 33.19 4.51
70 71 6.418101 TCATCCTTCTTTCAGAAATACCCAG 58.582 40.000 0.00 0.00 33.19 4.45
71 72 5.179452 TCCTTCTTTCAGAAATACCCAGG 57.821 43.478 0.00 0.00 33.19 4.45
72 73 4.849810 TCCTTCTTTCAGAAATACCCAGGA 59.150 41.667 0.00 1.13 33.19 3.86
73 74 4.944317 CCTTCTTTCAGAAATACCCAGGAC 59.056 45.833 0.00 0.00 33.19 3.85
74 75 4.202245 TCTTTCAGAAATACCCAGGACG 57.798 45.455 0.00 0.00 0.00 4.79
75 76 3.581332 TCTTTCAGAAATACCCAGGACGT 59.419 43.478 0.00 0.00 0.00 4.34
76 77 3.604875 TTCAGAAATACCCAGGACGTC 57.395 47.619 7.13 7.13 0.00 4.34
77 78 1.829222 TCAGAAATACCCAGGACGTCC 59.171 52.381 27.67 27.67 0.00 4.79
78 79 1.134491 CAGAAATACCCAGGACGTCCC 60.134 57.143 30.82 13.26 36.42 4.46
80 81 1.138464 GAAATACCCAGGACGTCCCTC 59.862 57.143 30.82 6.58 45.60 4.30
81 82 0.042131 AATACCCAGGACGTCCCTCA 59.958 55.000 30.82 12.35 45.60 3.86
82 83 0.042131 ATACCCAGGACGTCCCTCAA 59.958 55.000 30.82 13.43 45.60 3.02
83 84 0.178926 TACCCAGGACGTCCCTCAAA 60.179 55.000 30.82 11.59 45.60 2.69
84 85 0.840722 ACCCAGGACGTCCCTCAAAT 60.841 55.000 30.82 8.61 45.60 2.32
85 86 0.328258 CCCAGGACGTCCCTCAAATT 59.672 55.000 30.82 7.79 45.60 1.82
86 87 1.679032 CCCAGGACGTCCCTCAAATTC 60.679 57.143 30.82 2.55 45.60 2.17
87 88 1.679032 CCAGGACGTCCCTCAAATTCC 60.679 57.143 30.82 2.35 45.60 3.01
88 89 1.279271 CAGGACGTCCCTCAAATTCCT 59.721 52.381 30.82 5.32 45.60 3.36
89 90 1.985895 AGGACGTCCCTCAAATTCCTT 59.014 47.619 30.82 4.74 43.31 3.36
90 91 2.027100 AGGACGTCCCTCAAATTCCTTC 60.027 50.000 30.82 0.49 43.31 3.46
91 92 2.357075 GACGTCCCTCAAATTCCTTCC 58.643 52.381 3.51 0.00 0.00 3.46
92 93 1.985895 ACGTCCCTCAAATTCCTTCCT 59.014 47.619 0.00 0.00 0.00 3.36
93 94 2.375509 ACGTCCCTCAAATTCCTTCCTT 59.624 45.455 0.00 0.00 0.00 3.36
94 95 3.010420 CGTCCCTCAAATTCCTTCCTTC 58.990 50.000 0.00 0.00 0.00 3.46
95 96 3.559171 CGTCCCTCAAATTCCTTCCTTCA 60.559 47.826 0.00 0.00 0.00 3.02
96 97 4.407365 GTCCCTCAAATTCCTTCCTTCAA 58.593 43.478 0.00 0.00 0.00 2.69
97 98 5.019470 GTCCCTCAAATTCCTTCCTTCAAT 58.981 41.667 0.00 0.00 0.00 2.57
98 99 6.187682 GTCCCTCAAATTCCTTCCTTCAATA 58.812 40.000 0.00 0.00 0.00 1.90
99 100 6.836007 GTCCCTCAAATTCCTTCCTTCAATAT 59.164 38.462 0.00 0.00 0.00 1.28
100 101 7.013750 GTCCCTCAAATTCCTTCCTTCAATATC 59.986 40.741 0.00 0.00 0.00 1.63
101 102 6.266330 CCCTCAAATTCCTTCCTTCAATATCC 59.734 42.308 0.00 0.00 0.00 2.59
102 103 7.065504 CCTCAAATTCCTTCCTTCAATATCCT 58.934 38.462 0.00 0.00 0.00 3.24
103 104 8.220559 CCTCAAATTCCTTCCTTCAATATCCTA 58.779 37.037 0.00 0.00 0.00 2.94
104 105 9.282569 CTCAAATTCCTTCCTTCAATATCCTAG 57.717 37.037 0.00 0.00 0.00 3.02
105 106 8.781951 TCAAATTCCTTCCTTCAATATCCTAGT 58.218 33.333 0.00 0.00 0.00 2.57
106 107 8.844244 CAAATTCCTTCCTTCAATATCCTAGTG 58.156 37.037 0.00 0.00 0.00 2.74
107 108 7.698163 ATTCCTTCCTTCAATATCCTAGTGT 57.302 36.000 0.00 0.00 0.00 3.55
108 109 6.732896 TCCTTCCTTCAATATCCTAGTGTC 57.267 41.667 0.00 0.00 0.00 3.67
109 110 6.202331 TCCTTCCTTCAATATCCTAGTGTCA 58.798 40.000 0.00 0.00 0.00 3.58
110 111 6.846505 TCCTTCCTTCAATATCCTAGTGTCAT 59.153 38.462 0.00 0.00 0.00 3.06
111 112 6.933521 CCTTCCTTCAATATCCTAGTGTCATG 59.066 42.308 0.00 0.00 0.00 3.07
112 113 6.425210 TCCTTCAATATCCTAGTGTCATGG 57.575 41.667 0.00 0.00 0.00 3.66
113 114 6.143206 TCCTTCAATATCCTAGTGTCATGGA 58.857 40.000 0.00 0.00 0.00 3.41
114 115 6.268617 TCCTTCAATATCCTAGTGTCATGGAG 59.731 42.308 0.00 0.00 32.95 3.86
115 116 6.042552 CCTTCAATATCCTAGTGTCATGGAGT 59.957 42.308 0.00 0.00 32.95 3.85
116 117 6.410942 TCAATATCCTAGTGTCATGGAGTG 57.589 41.667 0.00 0.00 32.95 3.51
117 118 4.881019 ATATCCTAGTGTCATGGAGTGC 57.119 45.455 0.00 0.00 32.95 4.40
118 119 0.817654 TCCTAGTGTCATGGAGTGCG 59.182 55.000 0.00 0.00 0.00 5.34
119 120 0.807667 CCTAGTGTCATGGAGTGCGC 60.808 60.000 0.00 0.00 0.00 6.09
120 121 0.108662 CTAGTGTCATGGAGTGCGCA 60.109 55.000 5.66 5.66 0.00 6.09
121 122 0.389817 TAGTGTCATGGAGTGCGCAC 60.390 55.000 32.79 32.79 35.28 5.34
122 123 1.960763 GTGTCATGGAGTGCGCACA 60.961 57.895 39.21 21.96 35.21 4.57
123 124 1.003476 TGTCATGGAGTGCGCACAT 60.003 52.632 39.21 25.20 0.00 3.21
124 125 1.020861 TGTCATGGAGTGCGCACATC 61.021 55.000 39.21 30.22 0.00 3.06
125 126 1.020861 GTCATGGAGTGCGCACATCA 61.021 55.000 39.21 33.32 0.00 3.07
126 127 0.321475 TCATGGAGTGCGCACATCAA 60.321 50.000 39.21 26.60 0.00 2.57
127 128 0.736636 CATGGAGTGCGCACATCAAT 59.263 50.000 39.21 27.46 0.00 2.57
128 129 1.019673 ATGGAGTGCGCACATCAATC 58.980 50.000 39.21 27.15 0.00 2.67
129 130 1.026182 TGGAGTGCGCACATCAATCC 61.026 55.000 39.21 33.64 45.82 3.01
130 131 0.745845 GGAGTGCGCACATCAATCCT 60.746 55.000 39.21 18.62 43.23 3.24
131 132 1.089920 GAGTGCGCACATCAATCCTT 58.910 50.000 39.21 17.85 0.00 3.36
132 133 0.806868 AGTGCGCACATCAATCCTTG 59.193 50.000 39.21 0.00 0.00 3.61
133 134 0.799534 GTGCGCACATCAATCCTTGC 60.800 55.000 34.52 2.48 0.00 4.01
134 135 1.226773 GCGCACATCAATCCTTGCC 60.227 57.895 0.30 0.00 0.00 4.52
135 136 1.936436 GCGCACATCAATCCTTGCCA 61.936 55.000 0.30 0.00 0.00 4.92
136 137 0.099968 CGCACATCAATCCTTGCCAG 59.900 55.000 0.00 0.00 0.00 4.85
137 138 0.179119 GCACATCAATCCTTGCCAGC 60.179 55.000 0.00 0.00 0.00 4.85
138 139 0.458669 CACATCAATCCTTGCCAGCC 59.541 55.000 0.00 0.00 0.00 4.85
139 140 0.333993 ACATCAATCCTTGCCAGCCT 59.666 50.000 0.00 0.00 0.00 4.58
140 141 1.565759 ACATCAATCCTTGCCAGCCTA 59.434 47.619 0.00 0.00 0.00 3.93
141 142 2.176364 ACATCAATCCTTGCCAGCCTAT 59.824 45.455 0.00 0.00 0.00 2.57
142 143 2.353357 TCAATCCTTGCCAGCCTATG 57.647 50.000 0.00 0.00 0.00 2.23
143 144 0.672342 CAATCCTTGCCAGCCTATGC 59.328 55.000 0.00 0.00 37.95 3.14
154 155 3.621953 GCCTATGCTAGCCCTCTTG 57.378 57.895 13.29 0.00 33.53 3.02
155 156 0.761802 GCCTATGCTAGCCCTCTTGT 59.238 55.000 13.29 0.00 33.53 3.16
156 157 1.270571 GCCTATGCTAGCCCTCTTGTC 60.271 57.143 13.29 0.00 33.53 3.18
157 158 1.346068 CCTATGCTAGCCCTCTTGTCC 59.654 57.143 13.29 0.00 0.00 4.02
158 159 2.042464 CTATGCTAGCCCTCTTGTCCA 58.958 52.381 13.29 0.00 0.00 4.02
159 160 0.543749 ATGCTAGCCCTCTTGTCCAC 59.456 55.000 13.29 0.00 0.00 4.02
160 161 0.545309 TGCTAGCCCTCTTGTCCACT 60.545 55.000 13.29 0.00 0.00 4.00
161 162 0.615850 GCTAGCCCTCTTGTCCACTT 59.384 55.000 2.29 0.00 0.00 3.16
162 163 1.003696 GCTAGCCCTCTTGTCCACTTT 59.996 52.381 2.29 0.00 0.00 2.66
163 164 2.704572 CTAGCCCTCTTGTCCACTTTG 58.295 52.381 0.00 0.00 0.00 2.77
164 165 1.140312 AGCCCTCTTGTCCACTTTGA 58.860 50.000 0.00 0.00 0.00 2.69
165 166 1.707427 AGCCCTCTTGTCCACTTTGAT 59.293 47.619 0.00 0.00 0.00 2.57
166 167 1.815003 GCCCTCTTGTCCACTTTGATG 59.185 52.381 0.00 0.00 0.00 3.07
167 168 2.440409 CCCTCTTGTCCACTTTGATGG 58.560 52.381 0.00 0.00 41.57 3.51
168 169 2.224867 CCCTCTTGTCCACTTTGATGGT 60.225 50.000 0.00 0.00 40.95 3.55
169 170 3.077359 CCTCTTGTCCACTTTGATGGTC 58.923 50.000 0.00 0.00 40.95 4.02
170 171 3.077359 CTCTTGTCCACTTTGATGGTCC 58.923 50.000 0.00 0.00 40.95 4.46
171 172 2.162681 CTTGTCCACTTTGATGGTCCC 58.837 52.381 0.00 0.00 40.95 4.46
172 173 1.444933 TGTCCACTTTGATGGTCCCT 58.555 50.000 0.00 0.00 40.95 4.20
173 174 1.073763 TGTCCACTTTGATGGTCCCTG 59.926 52.381 0.00 0.00 40.95 4.45
174 175 1.351017 GTCCACTTTGATGGTCCCTGA 59.649 52.381 0.00 0.00 40.95 3.86
175 176 1.351017 TCCACTTTGATGGTCCCTGAC 59.649 52.381 0.00 0.00 40.95 3.51
176 177 1.442769 CACTTTGATGGTCCCTGACG 58.557 55.000 0.00 0.00 32.65 4.35
177 178 0.321653 ACTTTGATGGTCCCTGACGC 60.322 55.000 0.00 0.00 32.65 5.19
178 179 0.321564 CTTTGATGGTCCCTGACGCA 60.322 55.000 0.00 0.00 32.65 5.24
179 180 0.605319 TTTGATGGTCCCTGACGCAC 60.605 55.000 0.00 0.00 32.65 5.34
180 181 1.763546 TTGATGGTCCCTGACGCACA 61.764 55.000 0.00 0.00 32.65 4.57
181 182 1.221840 GATGGTCCCTGACGCACAT 59.778 57.895 0.00 0.00 32.65 3.21
182 183 0.464036 GATGGTCCCTGACGCACATA 59.536 55.000 0.00 0.00 32.65 2.29
183 184 0.908910 ATGGTCCCTGACGCACATAA 59.091 50.000 0.00 0.00 32.65 1.90
184 185 0.687920 TGGTCCCTGACGCACATAAA 59.312 50.000 0.00 0.00 32.65 1.40
185 186 1.084289 GGTCCCTGACGCACATAAAC 58.916 55.000 0.00 0.00 32.65 2.01
186 187 1.609580 GGTCCCTGACGCACATAAACA 60.610 52.381 0.00 0.00 32.65 2.83
187 188 1.732259 GTCCCTGACGCACATAAACAG 59.268 52.381 0.00 0.00 0.00 3.16
188 189 1.086696 CCCTGACGCACATAAACAGG 58.913 55.000 0.00 0.00 45.09 4.00
189 190 1.610624 CCCTGACGCACATAAACAGGT 60.611 52.381 0.00 0.00 44.33 4.00
190 191 2.354303 CCCTGACGCACATAAACAGGTA 60.354 50.000 0.00 0.00 44.33 3.08
191 192 2.930040 CCTGACGCACATAAACAGGTAG 59.070 50.000 0.00 0.00 41.91 3.18
192 193 3.368013 CCTGACGCACATAAACAGGTAGA 60.368 47.826 0.00 0.00 41.91 2.59
193 194 4.242475 CTGACGCACATAAACAGGTAGAA 58.758 43.478 0.00 0.00 0.00 2.10
194 195 4.633175 TGACGCACATAAACAGGTAGAAA 58.367 39.130 0.00 0.00 0.00 2.52
195 196 5.242434 TGACGCACATAAACAGGTAGAAAT 58.758 37.500 0.00 0.00 0.00 2.17
196 197 5.350365 TGACGCACATAAACAGGTAGAAATC 59.650 40.000 0.00 0.00 0.00 2.17
197 198 5.488341 ACGCACATAAACAGGTAGAAATCT 58.512 37.500 0.00 0.00 0.00 2.40
198 199 5.938125 ACGCACATAAACAGGTAGAAATCTT 59.062 36.000 0.00 0.00 0.00 2.40
199 200 6.430000 ACGCACATAAACAGGTAGAAATCTTT 59.570 34.615 0.00 0.00 0.00 2.52
200 201 7.040686 ACGCACATAAACAGGTAGAAATCTTTT 60.041 33.333 0.00 0.00 0.00 2.27
201 202 7.807907 CGCACATAAACAGGTAGAAATCTTTTT 59.192 33.333 0.00 0.00 0.00 1.94
202 203 8.915654 GCACATAAACAGGTAGAAATCTTTTTG 58.084 33.333 0.00 0.00 0.00 2.44
206 207 9.893305 ATAAACAGGTAGAAATCTTTTTGAACG 57.107 29.630 0.00 0.00 0.00 3.95
207 208 7.562454 AACAGGTAGAAATCTTTTTGAACGA 57.438 32.000 0.00 0.00 0.00 3.85
208 209 7.562454 ACAGGTAGAAATCTTTTTGAACGAA 57.438 32.000 0.00 0.00 0.00 3.85
209 210 7.415229 ACAGGTAGAAATCTTTTTGAACGAAC 58.585 34.615 0.00 0.00 0.00 3.95
210 211 6.573725 CAGGTAGAAATCTTTTTGAACGAACG 59.426 38.462 0.00 0.00 0.00 3.95
211 212 6.480981 AGGTAGAAATCTTTTTGAACGAACGA 59.519 34.615 0.14 0.00 0.00 3.85
212 213 7.172703 AGGTAGAAATCTTTTTGAACGAACGAT 59.827 33.333 0.14 0.00 0.00 3.73
213 214 7.268447 GGTAGAAATCTTTTTGAACGAACGATG 59.732 37.037 0.14 0.00 0.00 3.84
214 215 6.725246 AGAAATCTTTTTGAACGAACGATGT 58.275 32.000 0.14 0.00 0.00 3.06
215 216 6.632834 AGAAATCTTTTTGAACGAACGATGTG 59.367 34.615 0.14 0.00 0.00 3.21
216 217 4.203950 TCTTTTTGAACGAACGATGTGG 57.796 40.909 0.14 0.00 0.00 4.17
217 218 3.002862 TCTTTTTGAACGAACGATGTGGG 59.997 43.478 0.14 0.00 0.00 4.61
218 219 2.242047 TTTGAACGAACGATGTGGGA 57.758 45.000 0.14 0.00 0.00 4.37
219 220 1.504359 TTGAACGAACGATGTGGGAC 58.496 50.000 0.14 0.00 0.00 4.46
220 221 0.677288 TGAACGAACGATGTGGGACT 59.323 50.000 0.14 0.00 0.00 3.85
221 222 1.887854 TGAACGAACGATGTGGGACTA 59.112 47.619 0.14 0.00 0.00 2.59
222 223 2.257034 GAACGAACGATGTGGGACTAC 58.743 52.381 0.14 0.00 0.00 2.73
223 224 0.529378 ACGAACGATGTGGGACTACC 59.471 55.000 0.14 0.00 40.81 3.18
233 234 1.348064 TGGGACTACCACTGAGTTGG 58.652 55.000 0.48 0.48 46.80 3.77
239 240 3.763671 CCACTGAGTTGGTTGCCC 58.236 61.111 0.00 0.00 0.00 5.36
240 241 1.151450 CCACTGAGTTGGTTGCCCT 59.849 57.895 0.00 0.00 0.00 5.19
241 242 0.890996 CCACTGAGTTGGTTGCCCTC 60.891 60.000 0.00 0.00 0.00 4.30
242 243 0.890996 CACTGAGTTGGTTGCCCTCC 60.891 60.000 0.00 0.00 0.00 4.30
243 244 1.303643 CTGAGTTGGTTGCCCTCCC 60.304 63.158 0.00 0.00 0.00 4.30
244 245 1.774217 TGAGTTGGTTGCCCTCCCT 60.774 57.895 0.00 0.00 0.00 4.20
245 246 1.360393 TGAGTTGGTTGCCCTCCCTT 61.360 55.000 0.00 0.00 0.00 3.95
246 247 0.696501 GAGTTGGTTGCCCTCCCTTA 59.303 55.000 0.00 0.00 0.00 2.69
247 248 1.285078 GAGTTGGTTGCCCTCCCTTAT 59.715 52.381 0.00 0.00 0.00 1.73
248 249 1.716503 AGTTGGTTGCCCTCCCTTATT 59.283 47.619 0.00 0.00 0.00 1.40
249 250 1.824852 GTTGGTTGCCCTCCCTTATTG 59.175 52.381 0.00 0.00 0.00 1.90
250 251 0.334676 TGGTTGCCCTCCCTTATTGG 59.665 55.000 0.00 0.00 0.00 3.16
265 266 6.884280 CCTTATTGGGAAACAGATATGTCC 57.116 41.667 0.00 0.00 0.00 4.02
266 267 5.470098 CCTTATTGGGAAACAGATATGTCCG 59.530 44.000 0.00 0.00 0.00 4.79
267 268 3.992943 TTGGGAAACAGATATGTCCGT 57.007 42.857 0.00 0.00 0.00 4.69
268 269 5.623956 ATTGGGAAACAGATATGTCCGTA 57.376 39.130 0.00 0.00 0.00 4.02
269 270 5.623956 TTGGGAAACAGATATGTCCGTAT 57.376 39.130 0.00 0.00 0.00 3.06
270 271 6.734502 TTGGGAAACAGATATGTCCGTATA 57.265 37.500 0.00 0.00 0.00 1.47
271 272 6.734502 TGGGAAACAGATATGTCCGTATAA 57.265 37.500 0.00 0.00 0.00 0.98
272 273 7.127012 TGGGAAACAGATATGTCCGTATAAA 57.873 36.000 0.00 0.00 0.00 1.40
273 274 7.741785 TGGGAAACAGATATGTCCGTATAAAT 58.258 34.615 0.00 0.00 0.00 1.40
274 275 8.872134 TGGGAAACAGATATGTCCGTATAAATA 58.128 33.333 0.00 0.00 0.00 1.40
275 276 9.886132 GGGAAACAGATATGTCCGTATAAATAT 57.114 33.333 0.00 0.00 0.00 1.28
306 307 9.797642 ATGTATATATCCACATCAGCTTCAAAA 57.202 29.630 0.00 0.00 29.34 2.44
307 308 9.625747 TGTATATATCCACATCAGCTTCAAAAA 57.374 29.630 0.00 0.00 0.00 1.94
333 334 5.236911 TCGTCTTTAAACCGCACTTGTATTT 59.763 36.000 0.00 0.00 0.00 1.40
403 404 3.801307 TCTAGGATCCACGTGGCTATA 57.199 47.619 30.25 13.34 34.44 1.31
406 407 0.608640 GGATCCACGTGGCTATAGGG 59.391 60.000 30.25 3.51 34.44 3.53
414 415 1.760613 CGTGGCTATAGGGTGGAAAGA 59.239 52.381 1.04 0.00 0.00 2.52
422 423 2.669240 GGTGGAAAGACCTCCCGG 59.331 66.667 0.00 0.00 44.11 5.73
426 427 0.765135 TGGAAAGACCTCCCGGTGAA 60.765 55.000 0.00 0.00 45.73 3.18
485 486 1.409064 GTCATGGCGACTGGATGACTA 59.591 52.381 11.87 0.00 41.79 2.59
486 487 2.036475 GTCATGGCGACTGGATGACTAT 59.964 50.000 11.87 0.00 41.79 2.12
513 514 1.667724 GCACAACTATTCAGCGAGCAT 59.332 47.619 0.00 0.00 0.00 3.79
549 550 3.871006 TCGCTAAGATCATGCGTGATTTT 59.129 39.130 23.54 23.54 44.96 1.82
554 555 6.195983 GCTAAGATCATGCGTGATTTTCAAAG 59.804 38.462 23.68 17.65 44.96 2.77
555 556 5.633830 AGATCATGCGTGATTTTCAAAGT 57.366 34.783 22.04 0.00 44.96 2.66
562 563 0.316841 TGATTTTCAAAGTGGGCGCC 59.683 50.000 21.18 21.18 0.00 6.53
606 607 1.296715 GGCATCACAGGAGGAACGT 59.703 57.895 0.00 0.00 0.00 3.99
639 678 2.430367 GTCCTCAACGGGCAGGTT 59.570 61.111 0.00 0.00 37.34 3.50
647 745 0.534203 AACGGGCAGGTTAGTGTGTG 60.534 55.000 0.00 0.00 0.00 3.82
648 746 1.070786 CGGGCAGGTTAGTGTGTGT 59.929 57.895 0.00 0.00 0.00 3.72
649 747 1.227999 CGGGCAGGTTAGTGTGTGTG 61.228 60.000 0.00 0.00 0.00 3.82
650 748 0.889186 GGGCAGGTTAGTGTGTGTGG 60.889 60.000 0.00 0.00 0.00 4.17
651 749 0.889186 GGCAGGTTAGTGTGTGTGGG 60.889 60.000 0.00 0.00 0.00 4.61
652 750 0.179029 GCAGGTTAGTGTGTGTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
653 751 1.071071 GCAGGTTAGTGTGTGTGGGTA 59.929 52.381 0.00 0.00 0.00 3.69
654 752 2.870435 GCAGGTTAGTGTGTGTGGGTAG 60.870 54.545 0.00 0.00 0.00 3.18
655 753 2.367567 CAGGTTAGTGTGTGTGGGTAGT 59.632 50.000 0.00 0.00 0.00 2.73
656 754 2.631545 AGGTTAGTGTGTGTGGGTAGTC 59.368 50.000 0.00 0.00 0.00 2.59
657 755 2.366266 GGTTAGTGTGTGTGGGTAGTCA 59.634 50.000 0.00 0.00 0.00 3.41
658 756 3.181463 GGTTAGTGTGTGTGGGTAGTCAA 60.181 47.826 0.00 0.00 0.00 3.18
659 757 4.504340 GGTTAGTGTGTGTGGGTAGTCAAT 60.504 45.833 0.00 0.00 0.00 2.57
660 758 3.857157 AGTGTGTGTGGGTAGTCAATT 57.143 42.857 0.00 0.00 0.00 2.32
661 759 4.164843 AGTGTGTGTGGGTAGTCAATTT 57.835 40.909 0.00 0.00 0.00 1.82
662 760 4.134563 AGTGTGTGTGGGTAGTCAATTTC 58.865 43.478 0.00 0.00 0.00 2.17
663 761 4.134563 GTGTGTGTGGGTAGTCAATTTCT 58.865 43.478 0.00 0.00 0.00 2.52
664 762 4.213482 GTGTGTGTGGGTAGTCAATTTCTC 59.787 45.833 0.00 0.00 0.00 2.87
665 763 4.102524 TGTGTGTGGGTAGTCAATTTCTCT 59.897 41.667 0.00 0.00 0.00 3.10
666 764 4.691216 GTGTGTGGGTAGTCAATTTCTCTC 59.309 45.833 0.00 0.00 0.00 3.20
667 765 4.593206 TGTGTGGGTAGTCAATTTCTCTCT 59.407 41.667 0.00 0.00 0.00 3.10
668 766 5.172205 GTGTGGGTAGTCAATTTCTCTCTC 58.828 45.833 0.00 0.00 0.00 3.20
669 767 4.838423 TGTGGGTAGTCAATTTCTCTCTCA 59.162 41.667 0.00 0.00 0.00 3.27
670 768 5.485353 TGTGGGTAGTCAATTTCTCTCTCAT 59.515 40.000 0.00 0.00 0.00 2.90
671 769 6.013379 TGTGGGTAGTCAATTTCTCTCTCATT 60.013 38.462 0.00 0.00 0.00 2.57
672 770 6.881602 GTGGGTAGTCAATTTCTCTCTCATTT 59.118 38.462 0.00 0.00 0.00 2.32
673 771 8.041323 GTGGGTAGTCAATTTCTCTCTCATTTA 58.959 37.037 0.00 0.00 0.00 1.40
674 772 8.041323 TGGGTAGTCAATTTCTCTCTCATTTAC 58.959 37.037 0.00 0.00 0.00 2.01
675 773 8.041323 GGGTAGTCAATTTCTCTCTCATTTACA 58.959 37.037 0.00 0.00 0.00 2.41
676 774 9.606631 GGTAGTCAATTTCTCTCTCATTTACAT 57.393 33.333 0.00 0.00 0.00 2.29
728 826 3.760537 GTCACGGTGACTCTCAGATTAC 58.239 50.000 29.09 3.52 43.73 1.89
729 827 2.753452 TCACGGTGACTCTCAGATTACC 59.247 50.000 6.76 0.00 0.00 2.85
763 861 3.978241 ATCCTGGAGGGGCTTGCCT 62.978 63.158 11.71 0.00 35.41 4.75
804 903 1.014564 GCCAGACGTGACTGTAAGCC 61.015 60.000 0.00 0.00 37.60 4.35
869 968 2.562298 TCATGTTGTTGGGCCTTCATTC 59.438 45.455 4.53 1.89 0.00 2.67
878 977 1.322538 GGCCTTCATTCCGGTTGCAT 61.323 55.000 0.00 0.00 0.00 3.96
895 994 4.968812 TGCATGTGAACAACCTATCATG 57.031 40.909 0.00 0.00 36.68 3.07
896 995 4.334552 TGCATGTGAACAACCTATCATGT 58.665 39.130 0.00 0.00 36.21 3.21
897 996 4.766373 TGCATGTGAACAACCTATCATGTT 59.234 37.500 0.00 0.00 42.18 2.71
932 1042 1.518056 ATGTTCAACCAGCACGGCAG 61.518 55.000 0.00 0.00 39.03 4.85
951 1061 1.205055 GAGTGGCCTAGGCTAAGGTT 58.795 55.000 32.18 13.40 39.02 3.50
956 1066 2.335933 GGCCTAGGCTAAGGTTATCCA 58.664 52.381 32.18 0.00 39.02 3.41
966 1076 5.241728 GGCTAAGGTTATCCATGATTTCCAC 59.758 44.000 0.00 0.00 35.89 4.02
968 1078 6.238759 GCTAAGGTTATCCATGATTTCCACAC 60.239 42.308 0.00 0.00 35.89 3.82
970 1080 4.017591 AGGTTATCCATGATTTCCACACCA 60.018 41.667 0.00 0.00 35.89 4.17
971 1081 4.709397 GGTTATCCATGATTTCCACACCAA 59.291 41.667 0.00 0.00 0.00 3.67
972 1082 5.186797 GGTTATCCATGATTTCCACACCAAA 59.813 40.000 0.00 0.00 0.00 3.28
987 1097 2.035832 CACCAAACGCTCAAAGGGATTT 59.964 45.455 0.00 0.00 31.91 2.17
988 1098 3.254657 CACCAAACGCTCAAAGGGATTTA 59.745 43.478 0.00 0.00 31.91 1.40
1008 1118 3.761311 AGTTTCGTAGAGATGTCGTCC 57.239 47.619 0.00 0.00 38.43 4.79
1013 1123 0.465097 GTAGAGATGTCGTCCCGGGA 60.465 60.000 22.63 22.63 0.00 5.14
1079 1189 6.307155 GTTGGTAGTCGATTTCTTTGTCATG 58.693 40.000 0.00 0.00 0.00 3.07
1087 1197 9.383519 AGTCGATTTCTTTGTCATGTACATAAT 57.616 29.630 8.32 1.98 38.10 1.28
1116 1226 6.228258 AGTAATAACCAATGTCACAACGAGT 58.772 36.000 0.00 0.00 0.00 4.18
1231 1341 0.542333 GGCTCCAGGGGTAGAAAGTC 59.458 60.000 0.00 0.00 0.00 3.01
1233 1343 1.902141 GCTCCAGGGGTAGAAAGTCCT 60.902 57.143 0.00 0.00 0.00 3.85
1299 1409 2.859165 ACCTGTCGTTGAACATGGAT 57.141 45.000 0.00 0.00 0.00 3.41
1333 1443 0.397564 TCAGATGTTCAGCCAGCACA 59.602 50.000 0.00 0.00 0.00 4.57
1393 1504 0.740868 CGAGCGCTCAAAGGGATTCA 60.741 55.000 34.69 0.00 0.00 2.57
1404 1530 5.860611 TCAAAGGGATTCAGTTTCGTAGAA 58.139 37.500 0.00 0.00 45.90 2.10
1440 1566 2.485426 GGATATGGACAATGCCATCACG 59.515 50.000 11.41 0.00 45.36 4.35
1521 1655 6.049149 AGTAATAACCAATGTCACGATGAGG 58.951 40.000 0.00 0.00 0.00 3.86
1584 1718 2.638556 GTGTCATACGAGTGAGTGCT 57.361 50.000 0.00 0.00 0.00 4.40
1617 1752 2.945008 GTCGCCATCATGAAGGATCAAA 59.055 45.455 21.00 0.00 39.49 2.69
1618 1753 3.567164 GTCGCCATCATGAAGGATCAAAT 59.433 43.478 21.00 0.00 39.49 2.32
1619 1754 4.756642 GTCGCCATCATGAAGGATCAAATA 59.243 41.667 21.00 0.00 39.49 1.40
1753 1895 8.456471 GTGATATATAGTATCCTTGCACGTACA 58.544 37.037 0.00 0.00 0.00 2.90
1857 1999 4.053295 ACTGATGAAGCACATTTTGTTGC 58.947 39.130 0.00 0.00 39.56 4.17
1872 2014 4.799564 TTGTTGCTGGTTCTGAAGTTTT 57.200 36.364 0.00 0.00 0.00 2.43
1873 2015 4.799564 TGTTGCTGGTTCTGAAGTTTTT 57.200 36.364 0.00 0.00 0.00 1.94
1963 2105 8.468399 TGATTCATATTCATAGCAAAACTGCAA 58.532 29.630 0.00 0.00 37.25 4.08
1964 2106 9.304731 GATTCATATTCATAGCAAAACTGCAAA 57.695 29.630 0.00 0.00 37.25 3.68
1965 2107 9.656040 ATTCATATTCATAGCAAAACTGCAAAA 57.344 25.926 0.00 0.00 37.25 2.44
1966 2108 8.692110 TCATATTCATAGCAAAACTGCAAAAG 57.308 30.769 0.00 0.00 37.25 2.27
1967 2109 7.760794 TCATATTCATAGCAAAACTGCAAAAGG 59.239 33.333 0.00 0.00 37.25 3.11
1968 2110 4.255833 TCATAGCAAAACTGCAAAAGGG 57.744 40.909 0.00 0.00 37.25 3.95
1969 2111 2.524569 TAGCAAAACTGCAAAAGGGC 57.475 45.000 0.00 0.00 37.25 5.19
1970 2112 0.179048 AGCAAAACTGCAAAAGGGCC 60.179 50.000 0.00 0.00 37.25 5.80
1971 2113 1.165907 GCAAAACTGCAAAAGGGCCC 61.166 55.000 16.46 16.46 34.41 5.80
1984 2126 3.988525 GGCCCGTGCATTGCAACA 61.989 61.111 13.94 0.00 41.47 3.33
1996 2138 3.367703 GCATTGCAACAGGAGCATTTACT 60.368 43.478 0.00 0.00 42.33 2.24
2012 2154 5.928264 GCATTTACTGTGAAAGAGGCAATTT 59.072 36.000 0.00 0.00 0.00 1.82
2015 2157 6.817765 TTACTGTGAAAGAGGCAATTTAGG 57.182 37.500 0.00 0.00 0.00 2.69
2021 2163 5.124617 GTGAAAGAGGCAATTTAGGAAGGAG 59.875 44.000 0.00 0.00 0.00 3.69
2062 2204 3.502920 GGCATTAGTATCAGATCCGACG 58.497 50.000 0.00 0.00 0.00 5.12
2074 2216 2.635229 ATCCGACGACCTGCATGCTC 62.635 60.000 20.33 7.33 0.00 4.26
2086 2266 1.139654 TGCATGCTCCATCAGTAGTCC 59.860 52.381 20.33 0.00 0.00 3.85
2087 2267 1.542108 GCATGCTCCATCAGTAGTCCC 60.542 57.143 11.37 0.00 0.00 4.46
2091 2271 1.346068 GCTCCATCAGTAGTCCCATCC 59.654 57.143 0.00 0.00 0.00 3.51
2093 2273 1.580658 TCCATCAGTAGTCCCATCCCT 59.419 52.381 0.00 0.00 0.00 4.20
2125 2305 6.159575 TCCCATTTACATTTAGATGAGGGTCA 59.840 38.462 0.00 0.00 36.73 4.02
2129 2309 4.222124 ACATTTAGATGAGGGTCACCAC 57.778 45.455 0.00 0.00 36.57 4.16
2160 3036 6.419710 GTGTTACACCCTTTTGATACTTTTGC 59.580 38.462 3.79 0.00 0.00 3.68
2166 3042 7.397192 ACACCCTTTTGATACTTTTGCTATCAT 59.603 33.333 0.00 0.00 31.99 2.45
2167 3043 8.253113 CACCCTTTTGATACTTTTGCTATCATT 58.747 33.333 0.00 0.00 31.99 2.57
2183 3059 5.402867 GCTATCATTGTAAACCGCTCTAGAC 59.597 44.000 0.00 0.00 0.00 2.59
2198 3074 7.033791 CCGCTCTAGACAACAATAGAGTAAAA 58.966 38.462 10.11 0.00 44.53 1.52
2200 3076 7.253817 CGCTCTAGACAACAATAGAGTAAAAGC 60.254 40.741 10.11 0.00 44.53 3.51
2201 3077 7.545965 GCTCTAGACAACAATAGAGTAAAAGCA 59.454 37.037 10.11 0.00 44.53 3.91
2202 3078 9.593134 CTCTAGACAACAATAGAGTAAAAGCAT 57.407 33.333 0.00 0.00 40.01 3.79
2203 3079 9.371136 TCTAGACAACAATAGAGTAAAAGCATG 57.629 33.333 0.00 0.00 0.00 4.06
2206 3082 8.507249 AGACAACAATAGAGTAAAAGCATGTTC 58.493 33.333 0.00 0.00 0.00 3.18
2207 3083 8.165239 ACAACAATAGAGTAAAAGCATGTTCA 57.835 30.769 0.00 0.00 0.00 3.18
2208 3084 8.076178 ACAACAATAGAGTAAAAGCATGTTCAC 58.924 33.333 0.00 0.00 0.00 3.18
2209 3085 7.145932 ACAATAGAGTAAAAGCATGTTCACC 57.854 36.000 0.00 0.00 0.00 4.02
2210 3086 6.151144 ACAATAGAGTAAAAGCATGTTCACCC 59.849 38.462 0.00 0.00 0.00 4.61
2212 3088 5.499004 AGAGTAAAAGCATGTTCACCCTA 57.501 39.130 0.00 0.00 0.00 3.53
2213 3089 5.876357 AGAGTAAAAGCATGTTCACCCTAA 58.124 37.500 0.00 0.00 0.00 2.69
2214 3090 6.303839 AGAGTAAAAGCATGTTCACCCTAAA 58.696 36.000 0.00 0.00 0.00 1.85
2215 3091 6.775629 AGAGTAAAAGCATGTTCACCCTAAAA 59.224 34.615 0.00 0.00 0.00 1.52
2216 3092 7.451566 AGAGTAAAAGCATGTTCACCCTAAAAT 59.548 33.333 0.00 0.00 0.00 1.82
2217 3093 8.644374 AGTAAAAGCATGTTCACCCTAAAATA 57.356 30.769 0.00 0.00 0.00 1.40
2218 3094 9.084533 AGTAAAAGCATGTTCACCCTAAAATAA 57.915 29.630 0.00 0.00 0.00 1.40
2219 3095 9.699703 GTAAAAGCATGTTCACCCTAAAATAAA 57.300 29.630 0.00 0.00 0.00 1.40
2249 4453 0.951558 TTTTGCGTCTTCTTCCTGGC 59.048 50.000 0.00 0.00 0.00 4.85
2274 4478 0.180406 ACGGTTGCTGGTGTCTTCTT 59.820 50.000 0.00 0.00 0.00 2.52
2305 4509 1.451028 GATTTCTCAGCCGCTGCCT 60.451 57.895 15.98 0.00 38.69 4.75
2405 4609 3.808728 TGCAGGAGAAAGGATATTTCGG 58.191 45.455 0.00 0.00 33.86 4.30
2412 4616 2.348411 AAGGATATTTCGGCACCCAG 57.652 50.000 0.00 0.00 0.00 4.45
2448 4652 6.275335 TGTAATTCCTTTTCTATACGGACGG 58.725 40.000 0.00 0.00 0.00 4.79
2468 4672 3.062099 CGGGTTTGTAATGACTCGTGATG 59.938 47.826 0.00 0.00 35.14 3.07
2469 4673 3.181510 GGGTTTGTAATGACTCGTGATGC 60.182 47.826 0.00 0.00 0.00 3.91
2477 4681 0.244994 GACTCGTGATGCTCCAGTGT 59.755 55.000 0.00 0.00 0.00 3.55
2532 4736 4.374702 CGTGAAGGCGTGCAGTGC 62.375 66.667 8.58 8.58 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.672673 TTAACTTAAGAAGAGATGGATTTCAGG 57.327 33.333 10.09 0.00 0.00 3.86
6 7 9.732130 GGCATATTAACTTAAGAAGAGATGGAT 57.268 33.333 10.09 0.00 0.00 3.41
7 8 8.157476 GGGCATATTAACTTAAGAAGAGATGGA 58.843 37.037 10.09 0.00 0.00 3.41
8 9 7.939039 TGGGCATATTAACTTAAGAAGAGATGG 59.061 37.037 10.09 0.00 0.00 3.51
9 10 8.908786 TGGGCATATTAACTTAAGAAGAGATG 57.091 34.615 10.09 7.97 0.00 2.90
10 11 9.920946 TTTGGGCATATTAACTTAAGAAGAGAT 57.079 29.630 10.09 0.00 0.00 2.75
11 12 9.396022 CTTTGGGCATATTAACTTAAGAAGAGA 57.604 33.333 10.09 0.00 0.00 3.10
12 13 9.178758 ACTTTGGGCATATTAACTTAAGAAGAG 57.821 33.333 10.09 0.00 0.00 2.85
13 14 9.174166 GACTTTGGGCATATTAACTTAAGAAGA 57.826 33.333 10.09 0.00 0.00 2.87
14 15 8.406297 GGACTTTGGGCATATTAACTTAAGAAG 58.594 37.037 10.09 0.04 0.00 2.85
15 16 7.340999 GGGACTTTGGGCATATTAACTTAAGAA 59.659 37.037 10.09 0.00 0.00 2.52
16 17 6.831868 GGGACTTTGGGCATATTAACTTAAGA 59.168 38.462 10.09 0.00 0.00 2.10
17 18 6.238648 CGGGACTTTGGGCATATTAACTTAAG 60.239 42.308 0.00 0.00 0.00 1.85
18 19 5.591067 CGGGACTTTGGGCATATTAACTTAA 59.409 40.000 0.00 0.00 0.00 1.85
19 20 5.127491 CGGGACTTTGGGCATATTAACTTA 58.873 41.667 0.00 0.00 0.00 2.24
20 21 3.951680 CGGGACTTTGGGCATATTAACTT 59.048 43.478 0.00 0.00 0.00 2.66
21 22 3.551846 CGGGACTTTGGGCATATTAACT 58.448 45.455 0.00 0.00 0.00 2.24
22 23 2.621526 CCGGGACTTTGGGCATATTAAC 59.378 50.000 0.00 0.00 0.00 2.01
23 24 2.423660 CCCGGGACTTTGGGCATATTAA 60.424 50.000 18.48 0.00 38.90 1.40
24 25 1.144093 CCCGGGACTTTGGGCATATTA 59.856 52.381 18.48 0.00 38.90 0.98
25 26 0.106217 CCCGGGACTTTGGGCATATT 60.106 55.000 18.48 0.00 38.90 1.28
26 27 0.991355 TCCCGGGACTTTGGGCATAT 60.991 55.000 22.63 0.00 45.60 1.78
27 28 0.991355 ATCCCGGGACTTTGGGCATA 60.991 55.000 29.69 0.00 45.60 3.14
28 29 2.284515 GATCCCGGGACTTTGGGCAT 62.285 60.000 29.69 6.16 45.60 4.40
29 30 2.938798 ATCCCGGGACTTTGGGCA 60.939 61.111 29.69 0.00 45.60 5.36
30 31 2.124278 GATCCCGGGACTTTGGGC 60.124 66.667 29.69 5.51 45.60 5.36
32 33 0.179018 GGATGATCCCGGGACTTTGG 60.179 60.000 29.69 0.00 0.00 3.28
33 34 0.839946 AGGATGATCCCGGGACTTTG 59.160 55.000 29.69 0.00 37.19 2.77
34 35 1.490910 GAAGGATGATCCCGGGACTTT 59.509 52.381 29.69 16.10 37.19 2.66
35 36 1.132500 GAAGGATGATCCCGGGACTT 58.868 55.000 29.69 24.01 37.19 3.01
36 37 0.266152 AGAAGGATGATCCCGGGACT 59.734 55.000 29.69 15.91 37.19 3.85
37 38 1.132500 AAGAAGGATGATCCCGGGAC 58.868 55.000 29.69 20.25 37.19 4.46
38 39 1.768870 GAAAGAAGGATGATCCCGGGA 59.231 52.381 29.18 29.18 37.19 5.14
39 40 1.490490 TGAAAGAAGGATGATCCCGGG 59.510 52.381 16.85 16.85 37.19 5.73
40 41 2.435805 TCTGAAAGAAGGATGATCCCGG 59.564 50.000 8.08 0.00 42.31 5.73
41 42 3.827008 TCTGAAAGAAGGATGATCCCG 57.173 47.619 8.08 0.00 42.31 5.14
53 54 3.581332 ACGTCCTGGGTATTTCTGAAAGA 59.419 43.478 8.95 0.79 44.68 2.52
54 55 3.933332 GACGTCCTGGGTATTTCTGAAAG 59.067 47.826 3.51 0.00 0.00 2.62
55 56 3.307199 GGACGTCCTGGGTATTTCTGAAA 60.307 47.826 27.64 5.15 0.00 2.69
56 57 2.235402 GGACGTCCTGGGTATTTCTGAA 59.765 50.000 27.64 0.00 0.00 3.02
57 58 1.829222 GGACGTCCTGGGTATTTCTGA 59.171 52.381 27.64 0.00 0.00 3.27
58 59 1.134491 GGGACGTCCTGGGTATTTCTG 60.134 57.143 32.52 0.00 35.95 3.02
59 60 1.201424 GGGACGTCCTGGGTATTTCT 58.799 55.000 32.52 0.00 35.95 2.52
60 61 1.201424 AGGGACGTCCTGGGTATTTC 58.799 55.000 32.52 13.59 46.07 2.17
61 62 3.411875 AGGGACGTCCTGGGTATTT 57.588 52.632 32.52 7.01 46.07 1.40
70 71 2.357075 GAAGGAATTTGAGGGACGTCC 58.643 52.381 27.04 27.04 0.00 4.79
71 72 2.027100 AGGAAGGAATTTGAGGGACGTC 60.027 50.000 7.13 7.13 0.00 4.34
72 73 1.985895 AGGAAGGAATTTGAGGGACGT 59.014 47.619 0.00 0.00 0.00 4.34
73 74 2.789409 AGGAAGGAATTTGAGGGACG 57.211 50.000 0.00 0.00 0.00 4.79
74 75 4.034285 TGAAGGAAGGAATTTGAGGGAC 57.966 45.455 0.00 0.00 0.00 4.46
75 76 4.740154 TTGAAGGAAGGAATTTGAGGGA 57.260 40.909 0.00 0.00 0.00 4.20
76 77 6.266330 GGATATTGAAGGAAGGAATTTGAGGG 59.734 42.308 0.00 0.00 0.00 4.30
77 78 7.065504 AGGATATTGAAGGAAGGAATTTGAGG 58.934 38.462 0.00 0.00 0.00 3.86
78 79 9.282569 CTAGGATATTGAAGGAAGGAATTTGAG 57.717 37.037 0.00 0.00 0.00 3.02
79 80 8.781951 ACTAGGATATTGAAGGAAGGAATTTGA 58.218 33.333 0.00 0.00 0.00 2.69
80 81 8.844244 CACTAGGATATTGAAGGAAGGAATTTG 58.156 37.037 0.00 0.00 0.00 2.32
81 82 8.560903 ACACTAGGATATTGAAGGAAGGAATTT 58.439 33.333 0.00 0.00 0.00 1.82
82 83 8.107196 ACACTAGGATATTGAAGGAAGGAATT 57.893 34.615 0.00 0.00 0.00 2.17
83 84 7.348274 TGACACTAGGATATTGAAGGAAGGAAT 59.652 37.037 0.00 0.00 0.00 3.01
84 85 6.672218 TGACACTAGGATATTGAAGGAAGGAA 59.328 38.462 0.00 0.00 0.00 3.36
85 86 6.202331 TGACACTAGGATATTGAAGGAAGGA 58.798 40.000 0.00 0.00 0.00 3.36
86 87 6.485830 TGACACTAGGATATTGAAGGAAGG 57.514 41.667 0.00 0.00 0.00 3.46
87 88 6.933521 CCATGACACTAGGATATTGAAGGAAG 59.066 42.308 0.00 0.00 0.00 3.46
88 89 6.615316 TCCATGACACTAGGATATTGAAGGAA 59.385 38.462 0.00 0.00 0.00 3.36
89 90 6.143206 TCCATGACACTAGGATATTGAAGGA 58.857 40.000 0.00 0.00 0.00 3.36
90 91 6.042552 ACTCCATGACACTAGGATATTGAAGG 59.957 42.308 0.00 0.00 0.00 3.46
91 92 6.927936 CACTCCATGACACTAGGATATTGAAG 59.072 42.308 0.00 0.00 0.00 3.02
92 93 6.686378 GCACTCCATGACACTAGGATATTGAA 60.686 42.308 0.00 0.00 0.00 2.69
93 94 5.221521 GCACTCCATGACACTAGGATATTGA 60.222 44.000 0.00 0.00 0.00 2.57
94 95 4.993584 GCACTCCATGACACTAGGATATTG 59.006 45.833 0.00 0.00 0.00 1.90
95 96 4.262207 CGCACTCCATGACACTAGGATATT 60.262 45.833 0.00 0.00 0.00 1.28
96 97 3.256879 CGCACTCCATGACACTAGGATAT 59.743 47.826 0.00 0.00 0.00 1.63
97 98 2.623416 CGCACTCCATGACACTAGGATA 59.377 50.000 0.00 0.00 0.00 2.59
98 99 1.410517 CGCACTCCATGACACTAGGAT 59.589 52.381 0.00 0.00 0.00 3.24
99 100 0.817654 CGCACTCCATGACACTAGGA 59.182 55.000 0.00 0.00 0.00 2.94
100 101 0.807667 GCGCACTCCATGACACTAGG 60.808 60.000 0.30 0.00 0.00 3.02
101 102 0.108662 TGCGCACTCCATGACACTAG 60.109 55.000 5.66 0.00 0.00 2.57
102 103 0.389817 GTGCGCACTCCATGACACTA 60.390 55.000 32.55 0.00 35.24 2.74
103 104 1.669115 GTGCGCACTCCATGACACT 60.669 57.895 32.55 0.00 35.24 3.55
104 105 1.300971 ATGTGCGCACTCCATGACAC 61.301 55.000 37.59 11.16 37.40 3.67
105 106 1.003476 ATGTGCGCACTCCATGACA 60.003 52.632 37.59 18.18 0.00 3.58
106 107 1.020861 TGATGTGCGCACTCCATGAC 61.021 55.000 37.59 20.82 0.00 3.06
107 108 0.321475 TTGATGTGCGCACTCCATGA 60.321 50.000 37.59 19.65 0.00 3.07
108 109 0.736636 ATTGATGTGCGCACTCCATG 59.263 50.000 37.59 0.00 0.00 3.66
109 110 1.019673 GATTGATGTGCGCACTCCAT 58.980 50.000 37.59 27.00 0.00 3.41
110 111 1.026182 GGATTGATGTGCGCACTCCA 61.026 55.000 37.59 30.22 35.74 3.86
111 112 0.745845 AGGATTGATGTGCGCACTCC 60.746 55.000 37.59 32.84 35.87 3.85
112 113 1.089920 AAGGATTGATGTGCGCACTC 58.910 50.000 37.59 29.97 0.00 3.51
113 114 3.254629 AAGGATTGATGTGCGCACT 57.745 47.368 37.59 24.51 0.00 4.40
121 122 5.167448 GCATAGGCTGGCAAGGATTGATG 62.167 52.174 3.38 0.00 42.90 3.07
122 123 3.079531 GCATAGGCTGGCAAGGATTGAT 61.080 50.000 3.38 0.00 42.90 2.57
123 124 1.751733 GCATAGGCTGGCAAGGATTGA 60.752 52.381 3.38 0.00 42.90 2.57
124 125 0.672342 GCATAGGCTGGCAAGGATTG 59.328 55.000 3.38 0.00 43.04 2.67
125 126 3.122369 GCATAGGCTGGCAAGGATT 57.878 52.632 3.38 0.00 36.96 3.01
126 127 4.916358 GCATAGGCTGGCAAGGAT 57.084 55.556 3.38 0.00 36.96 3.24
137 138 1.346068 GGACAAGAGGGCTAGCATAGG 59.654 57.143 18.24 2.98 39.70 2.57
138 139 2.042464 TGGACAAGAGGGCTAGCATAG 58.958 52.381 18.24 2.27 43.09 2.23
139 140 1.762957 GTGGACAAGAGGGCTAGCATA 59.237 52.381 18.24 0.00 0.00 3.14
140 141 0.543749 GTGGACAAGAGGGCTAGCAT 59.456 55.000 18.24 3.88 0.00 3.79
141 142 0.545309 AGTGGACAAGAGGGCTAGCA 60.545 55.000 18.24 0.00 0.00 3.49
142 143 0.615850 AAGTGGACAAGAGGGCTAGC 59.384 55.000 6.04 6.04 0.00 3.42
143 144 2.303022 TCAAAGTGGACAAGAGGGCTAG 59.697 50.000 0.00 0.00 0.00 3.42
144 145 2.334977 TCAAAGTGGACAAGAGGGCTA 58.665 47.619 0.00 0.00 0.00 3.93
145 146 1.140312 TCAAAGTGGACAAGAGGGCT 58.860 50.000 0.00 0.00 0.00 5.19
146 147 1.815003 CATCAAAGTGGACAAGAGGGC 59.185 52.381 0.00 0.00 0.00 5.19
147 148 2.224867 ACCATCAAAGTGGACAAGAGGG 60.225 50.000 0.00 0.00 42.02 4.30
148 149 3.077359 GACCATCAAAGTGGACAAGAGG 58.923 50.000 0.00 0.00 42.02 3.69
149 150 3.077359 GGACCATCAAAGTGGACAAGAG 58.923 50.000 0.00 0.00 42.02 2.85
150 151 2.224769 GGGACCATCAAAGTGGACAAGA 60.225 50.000 0.00 0.00 42.02 3.02
151 152 2.162681 GGGACCATCAAAGTGGACAAG 58.837 52.381 0.00 0.00 42.02 3.16
152 153 1.780309 AGGGACCATCAAAGTGGACAA 59.220 47.619 0.00 0.00 42.02 3.18
153 154 1.073763 CAGGGACCATCAAAGTGGACA 59.926 52.381 0.00 0.00 42.02 4.02
154 155 1.351017 TCAGGGACCATCAAAGTGGAC 59.649 52.381 0.00 0.00 42.02 4.02
155 156 1.351017 GTCAGGGACCATCAAAGTGGA 59.649 52.381 0.00 0.00 42.02 4.02
156 157 1.826385 GTCAGGGACCATCAAAGTGG 58.174 55.000 0.00 0.00 45.04 4.00
157 158 1.442769 CGTCAGGGACCATCAAAGTG 58.557 55.000 0.00 0.00 0.00 3.16
158 159 0.321653 GCGTCAGGGACCATCAAAGT 60.322 55.000 0.00 0.00 0.00 2.66
159 160 0.321564 TGCGTCAGGGACCATCAAAG 60.322 55.000 0.00 0.00 0.00 2.77
160 161 0.605319 GTGCGTCAGGGACCATCAAA 60.605 55.000 0.00 0.00 0.00 2.69
161 162 1.003839 GTGCGTCAGGGACCATCAA 60.004 57.895 0.00 0.00 0.00 2.57
162 163 1.552799 ATGTGCGTCAGGGACCATCA 61.553 55.000 0.00 0.00 35.88 3.07
163 164 0.464036 TATGTGCGTCAGGGACCATC 59.536 55.000 0.00 0.00 35.88 3.51
164 165 0.908910 TTATGTGCGTCAGGGACCAT 59.091 50.000 0.00 0.00 35.88 3.55
165 166 0.687920 TTTATGTGCGTCAGGGACCA 59.312 50.000 0.00 0.00 35.88 4.02
166 167 1.084289 GTTTATGTGCGTCAGGGACC 58.916 55.000 0.00 0.00 35.88 4.46
167 168 1.732259 CTGTTTATGTGCGTCAGGGAC 59.268 52.381 0.00 0.00 37.52 4.46
168 169 1.338674 CCTGTTTATGTGCGTCAGGGA 60.339 52.381 0.00 0.00 41.10 4.20
169 170 1.086696 CCTGTTTATGTGCGTCAGGG 58.913 55.000 0.00 0.00 41.10 4.45
171 172 3.845178 TCTACCTGTTTATGTGCGTCAG 58.155 45.455 0.00 0.00 0.00 3.51
172 173 3.945981 TCTACCTGTTTATGTGCGTCA 57.054 42.857 0.00 0.00 0.00 4.35
173 174 5.581085 AGATTTCTACCTGTTTATGTGCGTC 59.419 40.000 0.00 0.00 0.00 5.19
174 175 5.488341 AGATTTCTACCTGTTTATGTGCGT 58.512 37.500 0.00 0.00 0.00 5.24
175 176 6.422776 AAGATTTCTACCTGTTTATGTGCG 57.577 37.500 0.00 0.00 0.00 5.34
176 177 8.915654 CAAAAAGATTTCTACCTGTTTATGTGC 58.084 33.333 0.00 0.00 0.00 4.57
180 181 9.893305 CGTTCAAAAAGATTTCTACCTGTTTAT 57.107 29.630 0.00 0.00 0.00 1.40
181 182 9.111613 TCGTTCAAAAAGATTTCTACCTGTTTA 57.888 29.630 0.00 0.00 0.00 2.01
182 183 7.992008 TCGTTCAAAAAGATTTCTACCTGTTT 58.008 30.769 0.00 0.00 0.00 2.83
183 184 7.562454 TCGTTCAAAAAGATTTCTACCTGTT 57.438 32.000 0.00 0.00 0.00 3.16
184 185 7.415229 GTTCGTTCAAAAAGATTTCTACCTGT 58.585 34.615 0.00 0.00 0.00 4.00
185 186 6.573725 CGTTCGTTCAAAAAGATTTCTACCTG 59.426 38.462 0.00 0.00 0.00 4.00
186 187 6.480981 TCGTTCGTTCAAAAAGATTTCTACCT 59.519 34.615 0.00 0.00 0.00 3.08
187 188 6.652245 TCGTTCGTTCAAAAAGATTTCTACC 58.348 36.000 0.00 0.00 0.00 3.18
188 189 7.797123 ACATCGTTCGTTCAAAAAGATTTCTAC 59.203 33.333 0.00 0.00 0.00 2.59
189 190 7.796660 CACATCGTTCGTTCAAAAAGATTTCTA 59.203 33.333 0.00 0.00 0.00 2.10
190 191 6.632834 CACATCGTTCGTTCAAAAAGATTTCT 59.367 34.615 0.00 0.00 0.00 2.52
191 192 6.129457 CCACATCGTTCGTTCAAAAAGATTTC 60.129 38.462 0.00 0.00 0.00 2.17
192 193 5.685511 CCACATCGTTCGTTCAAAAAGATTT 59.314 36.000 0.00 0.00 0.00 2.17
193 194 5.212194 CCACATCGTTCGTTCAAAAAGATT 58.788 37.500 0.00 0.00 0.00 2.40
194 195 4.320202 CCCACATCGTTCGTTCAAAAAGAT 60.320 41.667 0.00 0.00 0.00 2.40
195 196 3.002862 CCCACATCGTTCGTTCAAAAAGA 59.997 43.478 0.00 0.00 0.00 2.52
196 197 3.002862 TCCCACATCGTTCGTTCAAAAAG 59.997 43.478 0.00 0.00 0.00 2.27
197 198 2.943690 TCCCACATCGTTCGTTCAAAAA 59.056 40.909 0.00 0.00 0.00 1.94
198 199 2.288458 GTCCCACATCGTTCGTTCAAAA 59.712 45.455 0.00 0.00 0.00 2.44
199 200 1.868498 GTCCCACATCGTTCGTTCAAA 59.132 47.619 0.00 0.00 0.00 2.69
200 201 1.069513 AGTCCCACATCGTTCGTTCAA 59.930 47.619 0.00 0.00 0.00 2.69
201 202 0.677288 AGTCCCACATCGTTCGTTCA 59.323 50.000 0.00 0.00 0.00 3.18
202 203 2.257034 GTAGTCCCACATCGTTCGTTC 58.743 52.381 0.00 0.00 0.00 3.95
203 204 1.067354 GGTAGTCCCACATCGTTCGTT 60.067 52.381 0.00 0.00 0.00 3.85
204 205 0.529378 GGTAGTCCCACATCGTTCGT 59.471 55.000 0.00 0.00 0.00 3.85
205 206 0.528924 TGGTAGTCCCACATCGTTCG 59.471 55.000 0.00 0.00 38.72 3.95
214 215 1.348064 CCAACTCAGTGGTAGTCCCA 58.652 55.000 0.00 0.00 42.51 4.37
242 243 5.470098 CGGACATATCTGTTTCCCAATAAGG 59.530 44.000 0.00 0.00 35.14 2.69
243 244 6.055588 ACGGACATATCTGTTTCCCAATAAG 58.944 40.000 0.00 0.00 42.10 1.73
244 245 5.996644 ACGGACATATCTGTTTCCCAATAA 58.003 37.500 0.00 0.00 42.10 1.40
245 246 5.623956 ACGGACATATCTGTTTCCCAATA 57.376 39.130 0.00 0.00 42.10 1.90
246 247 4.503714 ACGGACATATCTGTTTCCCAAT 57.496 40.909 0.00 0.00 42.10 3.16
247 248 3.992943 ACGGACATATCTGTTTCCCAA 57.007 42.857 0.00 0.00 42.10 4.12
248 249 6.734502 TTATACGGACATATCTGTTTCCCA 57.265 37.500 0.00 0.00 42.10 4.37
249 250 9.886132 ATATTTATACGGACATATCTGTTTCCC 57.114 33.333 0.00 0.00 42.10 3.97
280 281 9.797642 TTTTGAAGCTGATGTGGATATATACAT 57.202 29.630 0.00 0.72 40.04 2.29
281 282 9.625747 TTTTTGAAGCTGATGTGGATATATACA 57.374 29.630 0.00 0.00 0.00 2.29
304 305 5.177725 AGTGCGGTTTAAAGACGATTTTT 57.822 34.783 14.38 0.00 0.00 1.94
305 306 4.823790 AGTGCGGTTTAAAGACGATTTT 57.176 36.364 14.38 0.00 0.00 1.82
306 307 4.035909 ACAAGTGCGGTTTAAAGACGATTT 59.964 37.500 14.38 0.00 0.00 2.17
307 308 3.562557 ACAAGTGCGGTTTAAAGACGATT 59.437 39.130 14.38 4.85 0.00 3.34
308 309 3.135994 ACAAGTGCGGTTTAAAGACGAT 58.864 40.909 14.38 0.00 0.00 3.73
309 310 2.553086 ACAAGTGCGGTTTAAAGACGA 58.447 42.857 14.38 0.29 0.00 4.20
310 311 4.657075 ATACAAGTGCGGTTTAAAGACG 57.343 40.909 7.63 7.63 0.00 4.18
311 312 6.203647 ACAAATACAAGTGCGGTTTAAAGAC 58.796 36.000 0.00 0.00 0.00 3.01
312 313 6.380095 ACAAATACAAGTGCGGTTTAAAGA 57.620 33.333 0.00 0.00 0.00 2.52
313 314 8.736751 AATACAAATACAAGTGCGGTTTAAAG 57.263 30.769 0.00 0.00 0.00 1.85
314 315 8.969267 CAAATACAAATACAAGTGCGGTTTAAA 58.031 29.630 0.00 0.00 0.00 1.52
315 316 8.350722 TCAAATACAAATACAAGTGCGGTTTAA 58.649 29.630 0.00 0.00 0.00 1.52
373 374 4.651503 ACGTGGATCCTAGATGAAGATTGT 59.348 41.667 14.23 0.00 0.00 2.71
421 422 3.208747 TGAAGAAGACCCAACTTCACC 57.791 47.619 0.00 0.00 45.83 4.02
426 427 2.876079 GCGGAATGAAGAAGACCCAACT 60.876 50.000 0.00 0.00 0.00 3.16
485 486 3.947834 GCTGAATAGTTGTGCCAACCTAT 59.052 43.478 12.63 8.39 0.00 2.57
486 487 3.343617 GCTGAATAGTTGTGCCAACCTA 58.656 45.455 12.63 6.92 0.00 3.08
546 547 1.758514 TGGGCGCCCACTTTGAAAA 60.759 52.632 44.23 19.08 41.89 2.29
555 556 3.955543 GAATCCCTTTGGGCGCCCA 62.956 63.158 44.23 44.23 43.94 5.36
562 563 0.676782 ACGAAGCCGAATCCCTTTGG 60.677 55.000 0.00 0.00 38.77 3.28
579 580 0.659427 CCTGTGATGCCATTGCTACG 59.341 55.000 0.00 0.00 38.71 3.51
623 624 0.834687 ACTAACCTGCCCGTTGAGGA 60.835 55.000 0.00 0.00 45.00 3.71
639 678 4.967084 AATTGACTACCCACACACACTA 57.033 40.909 0.00 0.00 0.00 2.74
647 745 5.407407 TGAGAGAGAAATTGACTACCCAC 57.593 43.478 0.00 0.00 0.00 4.61
648 746 6.627087 AATGAGAGAGAAATTGACTACCCA 57.373 37.500 0.00 0.00 0.00 4.51
649 747 8.041323 TGTAAATGAGAGAGAAATTGACTACCC 58.959 37.037 0.00 0.00 0.00 3.69
650 748 9.606631 ATGTAAATGAGAGAGAAATTGACTACC 57.393 33.333 0.00 0.00 0.00 3.18
686 784 8.650714 CGTGACATTGACCATATATCTTGTATG 58.349 37.037 0.00 0.00 0.00 2.39
687 785 7.819415 CCGTGACATTGACCATATATCTTGTAT 59.181 37.037 0.00 0.00 0.00 2.29
688 786 7.151976 CCGTGACATTGACCATATATCTTGTA 58.848 38.462 0.00 0.00 0.00 2.41
689 787 5.991606 CCGTGACATTGACCATATATCTTGT 59.008 40.000 0.00 0.00 0.00 3.16
690 788 5.991606 ACCGTGACATTGACCATATATCTTG 59.008 40.000 0.00 0.00 0.00 3.02
691 789 5.991606 CACCGTGACATTGACCATATATCTT 59.008 40.000 0.00 0.00 0.00 2.40
692 790 5.304357 TCACCGTGACATTGACCATATATCT 59.696 40.000 0.00 0.00 0.00 1.98
693 791 5.405571 GTCACCGTGACATTGACCATATATC 59.594 44.000 23.95 0.00 46.22 1.63
694 792 5.297547 GTCACCGTGACATTGACCATATAT 58.702 41.667 23.95 0.00 46.22 0.86
695 793 4.689071 GTCACCGTGACATTGACCATATA 58.311 43.478 23.95 0.00 46.22 0.86
696 794 3.531538 GTCACCGTGACATTGACCATAT 58.468 45.455 23.95 0.00 46.22 1.78
697 795 2.967362 GTCACCGTGACATTGACCATA 58.033 47.619 23.95 0.00 46.22 2.74
698 796 1.808411 GTCACCGTGACATTGACCAT 58.192 50.000 23.95 0.00 46.22 3.55
699 797 3.299050 GTCACCGTGACATTGACCA 57.701 52.632 23.95 0.00 46.22 4.02
737 835 1.438469 CCCCTCCAGGATCTGCATAA 58.562 55.000 0.00 0.00 38.24 1.90
739 837 2.459086 GCCCCTCCAGGATCTGCAT 61.459 63.158 0.00 0.00 38.24 3.96
748 846 1.077429 GTAAGGCAAGCCCCTCCAG 60.077 63.158 7.62 0.00 32.93 3.86
763 861 2.126618 CGCGGCACTCACTCGTAA 60.127 61.111 0.00 0.00 0.00 3.18
823 922 1.916777 GGAGGACTTTCCACCCGGA 60.917 63.158 0.73 0.00 40.86 5.14
836 935 1.080354 AACATGACGGGGAGGAGGA 59.920 57.895 0.00 0.00 0.00 3.71
869 968 3.177883 GTTGTTCACATGCAACCGG 57.822 52.632 0.00 0.00 39.07 5.28
890 989 2.094675 GTGCCAGCCTAACAACATGAT 58.905 47.619 0.00 0.00 0.00 2.45
895 994 1.470098 CATCTGTGCCAGCCTAACAAC 59.530 52.381 0.00 0.00 0.00 3.32
896 995 1.073763 ACATCTGTGCCAGCCTAACAA 59.926 47.619 0.00 0.00 0.00 2.83
897 996 0.692476 ACATCTGTGCCAGCCTAACA 59.308 50.000 0.00 0.00 0.00 2.41
912 1022 1.210155 GCCGTGCTGGTTGAACATC 59.790 57.895 0.00 0.00 41.21 3.06
920 1030 4.320456 CCACTCTGCCGTGCTGGT 62.320 66.667 0.00 0.00 41.21 4.00
932 1042 1.205055 AACCTTAGCCTAGGCCACTC 58.795 55.000 30.42 2.24 43.17 3.51
942 1052 5.241728 GTGGAAATCATGGATAACCTTAGCC 59.758 44.000 0.00 0.00 39.60 3.93
951 1061 4.397730 CGTTTGGTGTGGAAATCATGGATA 59.602 41.667 0.00 0.00 0.00 2.59
956 1066 2.228822 GAGCGTTTGGTGTGGAAATCAT 59.771 45.455 0.00 0.00 0.00 2.45
966 1076 1.247567 ATCCCTTTGAGCGTTTGGTG 58.752 50.000 0.00 0.00 0.00 4.17
968 1078 3.506067 ACTAAATCCCTTTGAGCGTTTGG 59.494 43.478 0.00 0.00 0.00 3.28
970 1080 5.562113 CGAAACTAAATCCCTTTGAGCGTTT 60.562 40.000 0.00 0.00 0.00 3.60
971 1081 4.083484 CGAAACTAAATCCCTTTGAGCGTT 60.083 41.667 0.00 0.00 0.00 4.84
972 1082 3.435671 CGAAACTAAATCCCTTTGAGCGT 59.564 43.478 0.00 0.00 0.00 5.07
987 1097 3.624861 GGGACGACATCTCTACGAAACTA 59.375 47.826 0.00 0.00 0.00 2.24
988 1098 2.422832 GGGACGACATCTCTACGAAACT 59.577 50.000 0.00 0.00 0.00 2.66
1008 1118 1.024579 CGTTGTCCATTTCCTCCCGG 61.025 60.000 0.00 0.00 0.00 5.73
1013 1123 1.271871 TGATGGCGTTGTCCATTTCCT 60.272 47.619 0.00 0.00 46.29 3.36
1087 1197 8.661257 CGTTGTGACATTGGTTATTACTATTCA 58.339 33.333 0.00 0.00 0.00 2.57
1116 1226 3.555966 TCAGATAGCAATCCGAGACTCA 58.444 45.455 2.82 0.00 31.98 3.41
1195 1305 1.912371 GCCGCCTTGCTTACAGTCAC 61.912 60.000 0.00 0.00 0.00 3.67
1231 1341 1.221840 CAACATGACGGGGAGGAGG 59.778 63.158 0.00 0.00 0.00 4.30
1233 1343 0.036164 CAACAACATGACGGGGAGGA 59.964 55.000 0.00 0.00 0.00 3.71
1299 1409 0.332972 TCTGAGCCAGCCTAGAGTCA 59.667 55.000 0.00 0.00 0.00 3.41
1393 1504 1.990563 CGACGCCATTTCTACGAAACT 59.009 47.619 0.00 0.00 0.00 2.66
1404 1530 1.399744 TATCCTCCTGCGACGCCATT 61.400 55.000 18.69 0.00 0.00 3.16
1521 1655 6.610741 ATTCAGATAGCAATCCGAAACTTC 57.389 37.500 0.00 0.00 33.35 3.01
1617 1752 2.566724 CCACCACCAAATGCACCTTTAT 59.433 45.455 0.00 0.00 0.00 1.40
1618 1753 1.967066 CCACCACCAAATGCACCTTTA 59.033 47.619 0.00 0.00 0.00 1.85
1619 1754 0.758123 CCACCACCAAATGCACCTTT 59.242 50.000 0.00 0.00 0.00 3.11
1958 2100 4.362476 GCACGGGCCCTTTTGCAG 62.362 66.667 26.80 11.34 34.97 4.41
1963 2105 3.694538 GCAATGCACGGGCCCTTT 61.695 61.111 22.43 2.91 40.13 3.11
1964 2106 4.992740 TGCAATGCACGGGCCCTT 62.993 61.111 22.43 7.92 40.13 3.95
1965 2107 4.992740 TTGCAATGCACGGGCCCT 62.993 61.111 22.43 3.67 38.71 5.19
1966 2108 4.740431 GTTGCAATGCACGGGCCC 62.740 66.667 13.57 13.57 38.71 5.80
1967 2109 3.919973 CTGTTGCAATGCACGGGCC 62.920 63.158 7.72 0.00 38.71 5.80
1968 2110 2.431260 CTGTTGCAATGCACGGGC 60.431 61.111 7.72 0.34 38.71 6.13
1969 2111 2.203972 CTCCTGTTGCAATGCACGGG 62.204 60.000 21.58 21.58 38.71 5.28
1970 2112 1.210931 CTCCTGTTGCAATGCACGG 59.789 57.895 7.72 9.24 38.71 4.94
1971 2113 1.443194 GCTCCTGTTGCAATGCACG 60.443 57.895 7.72 0.00 38.71 5.34
1976 2118 3.828451 ACAGTAAATGCTCCTGTTGCAAT 59.172 39.130 0.59 0.00 44.01 3.56
1984 2126 4.583871 CCTCTTTCACAGTAAATGCTCCT 58.416 43.478 0.00 0.00 0.00 3.69
1996 2138 4.766891 CCTTCCTAAATTGCCTCTTTCACA 59.233 41.667 0.00 0.00 0.00 3.58
2012 2154 2.924302 TGGTAGGTCAGTCTCCTTCCTA 59.076 50.000 8.59 0.00 41.24 2.94
2015 2157 3.100671 ACATGGTAGGTCAGTCTCCTTC 58.899 50.000 0.00 0.00 36.60 3.46
2021 2163 1.406069 CCAGCACATGGTAGGTCAGTC 60.406 57.143 0.00 0.00 44.91 3.51
2062 2204 0.107312 ACTGATGGAGCATGCAGGTC 60.107 55.000 21.98 8.78 42.42 3.85
2074 2216 2.109229 AGGGATGGGACTACTGATGG 57.891 55.000 0.00 0.00 0.00 3.51
2086 2266 3.631046 GGGAGCCGCTAGGGATGG 61.631 72.222 8.65 0.00 38.47 3.51
2087 2267 1.772819 AATGGGAGCCGCTAGGGATG 61.773 60.000 8.65 0.00 38.47 3.51
2091 2271 0.468226 TGTAAATGGGAGCCGCTAGG 59.532 55.000 0.00 0.00 41.62 3.02
2093 2273 3.290948 AAATGTAAATGGGAGCCGCTA 57.709 42.857 0.00 0.00 0.00 4.26
2136 2316 6.322712 AGCAAAAGTATCAAAAGGGTGTAACA 59.677 34.615 0.00 0.00 39.98 2.41
2137 2317 6.745116 AGCAAAAGTATCAAAAGGGTGTAAC 58.255 36.000 0.00 0.00 0.00 2.50
2160 3036 6.504398 TGTCTAGAGCGGTTTACAATGATAG 58.496 40.000 0.00 0.00 0.00 2.08
2166 3042 4.325028 TGTTGTCTAGAGCGGTTTACAA 57.675 40.909 0.00 0.00 0.00 2.41
2167 3043 4.325028 TTGTTGTCTAGAGCGGTTTACA 57.675 40.909 0.00 0.00 0.00 2.41
2183 3059 7.538678 GGTGAACATGCTTTTACTCTATTGTTG 59.461 37.037 0.00 0.00 0.00 3.33
2198 3074 7.716799 TGATTTATTTTAGGGTGAACATGCT 57.283 32.000 0.00 0.00 0.00 3.79
2200 3076 9.874205 AACATGATTTATTTTAGGGTGAACATG 57.126 29.630 0.00 0.00 37.06 3.21
2236 4440 2.003301 GTGATTCGCCAGGAAGAAGAC 58.997 52.381 0.00 0.00 38.24 3.01
2249 4453 1.227999 ACACCAGCAACCGTGATTCG 61.228 55.000 0.00 0.00 39.52 3.34
2274 4478 7.701078 GCGGCTGAGAAATCGTTAATATAGATA 59.299 37.037 0.00 0.00 0.00 1.98
2305 4509 1.134699 CGGGATCTTGTAGAAGCAGCA 60.135 52.381 0.00 0.00 0.00 4.41
2405 4609 4.006780 ACATCCAAATTTTTCTGGGTGC 57.993 40.909 7.01 0.00 46.15 5.01
2443 4647 1.997606 CGAGTCATTACAAACCCGTCC 59.002 52.381 0.00 0.00 0.00 4.79
2448 4652 3.684788 AGCATCACGAGTCATTACAAACC 59.315 43.478 0.00 0.00 0.00 3.27
2468 4672 0.036858 GGAACTCTGGACACTGGAGC 60.037 60.000 0.00 0.00 0.00 4.70
2469 4673 1.274728 CTGGAACTCTGGACACTGGAG 59.725 57.143 0.00 0.00 0.00 3.86
2477 4681 1.241990 CGTCGGTCTGGAACTCTGGA 61.242 60.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.