Multiple sequence alignment - TraesCS7D01G426400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G426400 chr7D 100.000 5368 0 0 1 5368 547279185 547273818 0.000000e+00 9913.0
1 TraesCS7D01G426400 chr7D 91.108 641 54 3 4728 5368 50639933 50639296 0.000000e+00 865.0
2 TraesCS7D01G426400 chr7A 86.416 4763 321 167 41 4623 629012666 629017282 0.000000e+00 4911.0
3 TraesCS7D01G426400 chr7A 96.491 57 2 0 144 200 628988346 628988402 1.590000e-15 95.3
4 TraesCS7D01G426400 chr7B 85.878 1827 153 68 2822 4595 590260068 590261842 0.000000e+00 1847.0
5 TraesCS7D01G426400 chr7B 87.562 1407 46 54 267 1619 590257339 590258670 0.000000e+00 1509.0
6 TraesCS7D01G426400 chr7B 89.922 645 63 2 4725 5368 287966001 287966644 0.000000e+00 830.0
7 TraesCS7D01G426400 chr7B 87.073 673 37 17 2168 2829 590259374 590260007 0.000000e+00 715.0
8 TraesCS7D01G426400 chr7B 83.745 486 45 17 1682 2153 590258859 590259324 3.840000e-116 429.0
9 TraesCS7D01G426400 chr7B 85.870 276 29 8 1 273 590254804 590255072 8.800000e-73 285.0
10 TraesCS7D01G426400 chr4D 91.846 650 45 4 4720 5368 309902963 309903605 0.000000e+00 900.0
11 TraesCS7D01G426400 chr2A 90.388 645 59 3 4725 5368 209096949 209097591 0.000000e+00 845.0
12 TraesCS7D01G426400 chr2D 90.967 631 46 3 4738 5368 379863899 379863280 0.000000e+00 839.0
13 TraesCS7D01G426400 chr2D 74.123 228 43 12 1257 1473 31889627 31889405 4.460000e-11 80.5
14 TraesCS7D01G426400 chr5D 90.172 641 53 2 4728 5368 334047597 334048227 0.000000e+00 826.0
15 TraesCS7D01G426400 chr5D 75.097 257 48 13 1230 1477 539075106 539075355 7.350000e-19 106.0
16 TraesCS7D01G426400 chr3B 89.783 646 61 3 4723 5368 806063974 806063334 0.000000e+00 822.0
17 TraesCS7D01G426400 chr3A 88.992 645 70 1 4724 5368 736102831 736102188 0.000000e+00 797.0
18 TraesCS7D01G426400 chr3A 89.694 621 58 3 4750 5368 12023276 12023892 0.000000e+00 787.0
19 TraesCS7D01G426400 chr5A 79.832 238 41 7 1240 1473 379021854 379021620 3.330000e-37 167.0
20 TraesCS7D01G426400 chr5B 78.992 238 43 7 1240 1473 325937374 325937140 7.200000e-34 156.0
21 TraesCS7D01G426400 chr5B 77.165 254 37 19 1230 1470 680752099 680752344 1.570000e-25 128.0
22 TraesCS7D01G426400 chr4A 75.769 260 44 14 1230 1477 629436303 629436051 4.390000e-21 113.0
23 TraesCS7D01G426400 chr4A 75.000 208 42 6 1271 1470 629424330 629424125 2.660000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G426400 chr7D 547273818 547279185 5367 True 9913 9913 100.0000 1 5368 1 chr7D.!!$R2 5367
1 TraesCS7D01G426400 chr7D 50639296 50639933 637 True 865 865 91.1080 4728 5368 1 chr7D.!!$R1 640
2 TraesCS7D01G426400 chr7A 629012666 629017282 4616 False 4911 4911 86.4160 41 4623 1 chr7A.!!$F2 4582
3 TraesCS7D01G426400 chr7B 590254804 590261842 7038 False 957 1847 86.0256 1 4595 5 chr7B.!!$F2 4594
4 TraesCS7D01G426400 chr7B 287966001 287966644 643 False 830 830 89.9220 4725 5368 1 chr7B.!!$F1 643
5 TraesCS7D01G426400 chr4D 309902963 309903605 642 False 900 900 91.8460 4720 5368 1 chr4D.!!$F1 648
6 TraesCS7D01G426400 chr2A 209096949 209097591 642 False 845 845 90.3880 4725 5368 1 chr2A.!!$F1 643
7 TraesCS7D01G426400 chr2D 379863280 379863899 619 True 839 839 90.9670 4738 5368 1 chr2D.!!$R2 630
8 TraesCS7D01G426400 chr5D 334047597 334048227 630 False 826 826 90.1720 4728 5368 1 chr5D.!!$F1 640
9 TraesCS7D01G426400 chr3B 806063334 806063974 640 True 822 822 89.7830 4723 5368 1 chr3B.!!$R1 645
10 TraesCS7D01G426400 chr3A 736102188 736102831 643 True 797 797 88.9920 4724 5368 1 chr3A.!!$R1 644
11 TraesCS7D01G426400 chr3A 12023276 12023892 616 False 787 787 89.6940 4750 5368 1 chr3A.!!$F1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 2670 0.028902 AAAAAGCGAGCGTTCACACC 59.971 50.0 0.00 0.00 0.00 4.16 F
780 3086 0.176680 AGCGAGCGGTTCATCTTCAT 59.823 50.0 0.00 0.00 0.00 2.57 F
1036 3368 0.385223 CGTGCTTCTCTTGTTGCTGC 60.385 55.0 0.00 0.00 0.00 5.25 F
1909 4410 0.097325 GCGAACTGTCTCGATCGAGT 59.903 55.0 36.68 22.27 41.44 4.18 F
2518 5085 0.321653 GTGCAAGGGACCCTGTACAG 60.322 60.0 15.76 16.34 32.13 2.74 F
3370 6028 0.168348 GCTGCTGCTCTGTCAACATG 59.832 55.0 8.53 0.00 36.03 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1651 4141 0.110486 CCAAGTGGCCACAACCTACT 59.890 55.0 36.39 12.43 0.00 2.57 R
1652 4142 0.179001 ACCAAGTGGCCACAACCTAC 60.179 55.0 36.39 9.07 39.32 3.18 R
2114 4628 0.729690 GGCGATGAAAAGCAGGAGAC 59.270 55.0 0.00 0.00 34.54 3.36 R
3306 5964 0.231279 ATGAACACGACGACGCAAAC 59.769 50.0 7.30 0.00 43.96 2.93 R
3376 6034 0.400213 TGTTAACTGCAGGTCCTGGG 59.600 55.0 20.72 0.00 31.21 4.45 R
4624 7360 0.038343 GACGGTGGCCAAGTTACGTA 60.038 55.0 7.24 0.00 34.43 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.592400 CGTAGAGACCAAGCGGACCA 61.592 60.000 0.00 0.00 35.59 4.02
27 28 2.029623 GTAGAGACCAAGCGGACCATA 58.970 52.381 0.00 0.00 35.59 2.74
107 108 3.314080 ACCCCGAAATAAATACATGCGTG 59.686 43.478 3.82 3.82 0.00 5.34
112 113 4.202158 CGAAATAAATACATGCGTGCACAC 59.798 41.667 18.64 7.98 0.00 3.82
124 125 1.004560 TGCACACTGAGCTAGCCAC 60.005 57.895 12.13 6.84 0.00 5.01
126 127 1.078848 CACACTGAGCTAGCCACCC 60.079 63.158 12.13 0.00 0.00 4.61
128 129 2.122729 ACTGAGCTAGCCACCCCA 59.877 61.111 12.13 1.30 0.00 4.96
129 130 1.992277 ACTGAGCTAGCCACCCCAG 60.992 63.158 12.13 13.05 0.00 4.45
203 210 1.379977 CCGCTCTACTCCTCCCACA 60.380 63.158 0.00 0.00 0.00 4.17
204 211 1.388065 CCGCTCTACTCCTCCCACAG 61.388 65.000 0.00 0.00 0.00 3.66
215 222 3.252284 CCCACAGTCCCACCTGCT 61.252 66.667 0.00 0.00 35.83 4.24
216 223 1.918293 CCCACAGTCCCACCTGCTA 60.918 63.158 0.00 0.00 35.83 3.49
239 254 2.091541 GCCACCGAATTGAATTCCTCA 58.908 47.619 11.94 0.00 35.89 3.86
265 280 2.388735 TCCAGCCAACAGATCGATAGT 58.611 47.619 0.00 0.00 37.40 2.12
294 2585 3.802866 TCAAACAAAAACCAATCAGCCC 58.197 40.909 0.00 0.00 0.00 5.19
301 2592 2.514458 AACCAATCAGCCCGAGAAAT 57.486 45.000 0.00 0.00 0.00 2.17
305 2596 2.357009 CCAATCAGCCCGAGAAATGAAG 59.643 50.000 0.00 0.00 0.00 3.02
379 2670 0.028902 AAAAAGCGAGCGTTCACACC 59.971 50.000 0.00 0.00 0.00 4.16
417 2708 4.537433 GCGGGACTAGCAGCCCAG 62.537 72.222 14.29 9.03 44.94 4.45
418 2709 4.537433 CGGGACTAGCAGCCCAGC 62.537 72.222 14.29 0.00 44.94 4.85
431 2722 1.154205 GCCCAGCGCATGTGTACTAG 61.154 60.000 11.47 0.00 37.47 2.57
481 2783 5.604565 TCTTATCTCATGCCATGTGTACTG 58.395 41.667 4.31 0.00 0.00 2.74
484 2786 3.337358 TCTCATGCCATGTGTACTGTTG 58.663 45.455 4.31 0.00 0.00 3.33
485 2787 3.076621 CTCATGCCATGTGTACTGTTGT 58.923 45.455 4.31 0.00 0.00 3.32
486 2788 3.073678 TCATGCCATGTGTACTGTTGTC 58.926 45.455 4.31 0.00 0.00 3.18
487 2789 2.928801 TGCCATGTGTACTGTTGTCT 57.071 45.000 0.00 0.00 0.00 3.41
488 2790 2.493035 TGCCATGTGTACTGTTGTCTG 58.507 47.619 0.00 0.00 0.00 3.51
489 2791 1.197721 GCCATGTGTACTGTTGTCTGC 59.802 52.381 0.00 0.00 0.00 4.26
759 3065 4.098416 GGCAGAAATAATGTGACGAAAGC 58.902 43.478 0.00 0.00 0.00 3.51
775 3081 3.621394 GCGAGCGAGCGGTTCATC 61.621 66.667 0.00 0.00 0.00 2.92
776 3082 2.103143 CGAGCGAGCGGTTCATCT 59.897 61.111 0.00 0.00 0.00 2.90
778 3084 1.475441 CGAGCGAGCGGTTCATCTTC 61.475 60.000 0.00 0.00 0.00 2.87
779 3085 0.458543 GAGCGAGCGGTTCATCTTCA 60.459 55.000 0.00 0.00 0.00 3.02
780 3086 0.176680 AGCGAGCGGTTCATCTTCAT 59.823 50.000 0.00 0.00 0.00 2.57
781 3087 1.009829 GCGAGCGGTTCATCTTCATT 58.990 50.000 0.00 0.00 0.00 2.57
782 3088 2.159099 AGCGAGCGGTTCATCTTCATTA 60.159 45.455 0.00 0.00 0.00 1.90
783 3089 2.802816 GCGAGCGGTTCATCTTCATTAT 59.197 45.455 0.00 0.00 0.00 1.28
784 3090 3.987868 GCGAGCGGTTCATCTTCATTATA 59.012 43.478 0.00 0.00 0.00 0.98
785 3091 4.143305 GCGAGCGGTTCATCTTCATTATAC 60.143 45.833 0.00 0.00 0.00 1.47
786 3092 4.088638 CGAGCGGTTCATCTTCATTATACG 59.911 45.833 0.00 0.00 0.00 3.06
787 3093 5.196341 AGCGGTTCATCTTCATTATACGA 57.804 39.130 0.00 0.00 0.00 3.43
788 3094 5.784177 AGCGGTTCATCTTCATTATACGAT 58.216 37.500 0.00 0.00 0.00 3.73
789 3095 5.635280 AGCGGTTCATCTTCATTATACGATG 59.365 40.000 0.00 0.00 35.70 3.84
827 3133 2.925653 TGGATGGGAATGGAAAAGGAGA 59.074 45.455 0.00 0.00 0.00 3.71
925 3235 4.444733 CCCATCATGCATAGTTGTGTCCTA 60.445 45.833 0.00 0.00 0.00 2.94
966 3276 3.800685 CTGTTCGTGCCCGGACACA 62.801 63.158 21.39 5.35 45.23 3.72
976 3286 2.566529 CGGACACACGCAGAGCTA 59.433 61.111 0.00 0.00 0.00 3.32
1030 3362 1.373497 CGCTCCGTGCTTCTCTTGT 60.373 57.895 0.00 0.00 40.11 3.16
1031 3363 0.946221 CGCTCCGTGCTTCTCTTGTT 60.946 55.000 0.00 0.00 40.11 2.83
1032 3364 0.514691 GCTCCGTGCTTCTCTTGTTG 59.485 55.000 0.00 0.00 38.95 3.33
1036 3368 0.385223 CGTGCTTCTCTTGTTGCTGC 60.385 55.000 0.00 0.00 0.00 5.25
1046 3378 3.292936 GTTGCTGCTGCTGCTGGT 61.293 61.111 27.67 0.00 40.48 4.00
1092 3439 2.722201 GGCGTTCCTGGAGGACGAT 61.722 63.158 21.61 0.00 45.39 3.73
1098 3445 0.544357 TCCTGGAGGACGATGTGGTT 60.544 55.000 0.00 0.00 39.78 3.67
1231 3596 3.375443 AAGGAGGAGATCGCGGGGA 62.375 63.158 6.13 0.00 0.00 4.81
1473 3838 2.731571 GCTGCCCATCCAGGTACGA 61.732 63.158 0.00 0.00 34.66 3.43
1488 3853 2.397549 GTACGAACAAGTAACTGCCGT 58.602 47.619 0.00 0.00 34.62 5.68
1489 3854 1.494824 ACGAACAAGTAACTGCCGTC 58.505 50.000 0.00 0.00 0.00 4.79
1490 3855 1.068127 ACGAACAAGTAACTGCCGTCT 59.932 47.619 0.00 0.00 0.00 4.18
1491 3856 1.455786 CGAACAAGTAACTGCCGTCTG 59.544 52.381 0.00 0.00 0.00 3.51
1492 3857 1.194772 GAACAAGTAACTGCCGTCTGC 59.805 52.381 0.00 0.00 41.77 4.26
1493 3858 0.602905 ACAAGTAACTGCCGTCTGCC 60.603 55.000 0.00 0.00 40.16 4.85
1494 3859 1.374252 AAGTAACTGCCGTCTGCCG 60.374 57.895 0.00 0.00 40.16 5.69
1495 3860 3.488090 GTAACTGCCGTCTGCCGC 61.488 66.667 0.00 0.00 40.16 6.53
1496 3861 3.691342 TAACTGCCGTCTGCCGCT 61.691 61.111 0.00 0.00 40.16 5.52
1497 3862 3.932580 TAACTGCCGTCTGCCGCTG 62.933 63.158 0.00 0.00 40.16 5.18
1597 3963 1.593750 CGAGCCCAGCATGCTACTC 60.594 63.158 22.19 23.61 39.69 2.59
1598 3964 1.227793 GAGCCCAGCATGCTACTCC 60.228 63.158 22.19 9.20 39.69 3.85
1599 3965 1.976132 GAGCCCAGCATGCTACTCCA 61.976 60.000 22.19 0.00 39.69 3.86
1627 4117 3.057734 CCACACAGTTTCTACTCCGTTC 58.942 50.000 0.00 0.00 30.26 3.95
1656 4146 6.414408 CTGTTCAAGCTGTTTATCAGTAGG 57.586 41.667 0.00 0.00 45.23 3.18
1680 4170 1.613317 GGCCACTTGGTTAATGGGGC 61.613 60.000 0.00 0.00 39.18 5.80
1724 4225 6.035975 GCATTATCATTGCCCACTACAAAAAC 59.964 38.462 0.00 0.00 33.95 2.43
1727 4228 5.344743 TCATTGCCCACTACAAAAACAAA 57.655 34.783 0.00 0.00 0.00 2.83
1731 4232 3.927142 TGCCCACTACAAAAACAAAAACG 59.073 39.130 0.00 0.00 0.00 3.60
1732 4233 4.174762 GCCCACTACAAAAACAAAAACGA 58.825 39.130 0.00 0.00 0.00 3.85
1733 4234 4.031991 GCCCACTACAAAAACAAAAACGAC 59.968 41.667 0.00 0.00 0.00 4.34
1734 4235 5.404096 CCCACTACAAAAACAAAAACGACT 58.596 37.500 0.00 0.00 0.00 4.18
1759 4260 3.434940 TTCTTCTAGTTTGGGCCTTCC 57.565 47.619 4.53 0.00 0.00 3.46
1805 4306 1.507141 CTTGTGGTTGCTGGGTCGAC 61.507 60.000 7.13 7.13 0.00 4.20
1821 4322 4.357142 GGTCGACGATTGCACTTAGATAA 58.643 43.478 9.92 0.00 0.00 1.75
1870 4371 2.031163 GCCTCTGCAGGAACACGT 59.969 61.111 15.13 0.00 43.65 4.49
1871 4372 2.029844 GCCTCTGCAGGAACACGTC 61.030 63.158 15.13 0.00 43.65 4.34
1878 4379 2.985282 AGGAACACGTCGCCGGTA 60.985 61.111 1.90 0.00 38.78 4.02
1883 4384 3.740397 CACGTCGCCGGTAGGACA 61.740 66.667 18.19 0.00 41.02 4.02
1885 4386 2.025727 CGTCGCCGGTAGGACATC 59.974 66.667 18.19 0.00 41.02 3.06
1906 4407 2.560151 GCGCGAACTGTCTCGATCG 61.560 63.158 12.10 9.36 41.44 3.69
1908 4409 0.921662 CGCGAACTGTCTCGATCGAG 60.922 60.000 34.20 34.20 41.44 4.04
1909 4410 0.097325 GCGAACTGTCTCGATCGAGT 59.903 55.000 36.68 22.27 41.44 4.18
1910 4411 1.466024 GCGAACTGTCTCGATCGAGTT 60.466 52.381 36.68 27.02 41.44 3.01
1911 4412 2.432856 CGAACTGTCTCGATCGAGTTC 58.567 52.381 36.68 30.76 41.44 3.01
1912 4413 2.432856 GAACTGTCTCGATCGAGTTCG 58.567 52.381 36.68 27.55 42.49 3.95
1913 4414 1.440708 ACTGTCTCGATCGAGTTCGT 58.559 50.000 36.68 28.09 42.49 3.85
1914 4415 1.394227 ACTGTCTCGATCGAGTTCGTC 59.606 52.381 36.68 23.98 42.49 4.20
1915 4416 1.661617 CTGTCTCGATCGAGTTCGTCT 59.338 52.381 36.68 0.00 42.49 4.18
1916 4417 1.659601 TGTCTCGATCGAGTTCGTCTC 59.340 52.381 36.68 21.29 42.49 3.36
1917 4418 1.659601 GTCTCGATCGAGTTCGTCTCA 59.340 52.381 36.68 17.94 42.88 3.27
1921 4428 2.740447 TCGATCGAGTTCGTCTCAGAAA 59.260 45.455 15.15 0.00 42.88 2.52
1923 4430 3.425094 CGATCGAGTTCGTCTCAGAAACT 60.425 47.826 10.26 0.00 42.88 2.66
1925 4432 3.629058 TCGAGTTCGTCTCAGAAACTTG 58.371 45.455 1.07 1.23 42.88 3.16
1929 4436 2.595124 TCGTCTCAGAAACTTGTGCA 57.405 45.000 0.00 0.00 0.00 4.57
1941 4448 6.422701 CAGAAACTTGTGCATGTTTTCATCAT 59.577 34.615 14.48 0.00 38.34 2.45
1942 4449 6.643770 AGAAACTTGTGCATGTTTTCATCATC 59.356 34.615 14.48 4.11 38.34 2.92
1944 4451 5.466819 ACTTGTGCATGTTTTCATCATCAG 58.533 37.500 0.00 0.00 38.64 2.90
1945 4452 5.242171 ACTTGTGCATGTTTTCATCATCAGA 59.758 36.000 0.00 0.00 38.64 3.27
1946 4453 5.305139 TGTGCATGTTTTCATCATCAGAG 57.695 39.130 0.00 0.00 38.64 3.35
2019 4531 3.319198 ACCCGCCGTTGGTGAGAT 61.319 61.111 0.00 0.00 34.74 2.75
2107 4621 1.933247 TTTTCACGCCAAAAAGCCAG 58.067 45.000 0.00 0.00 0.00 4.85
2114 4628 1.335324 CGCCAAAAAGCCAGAGACTTG 60.335 52.381 0.00 0.00 0.00 3.16
2180 4735 0.776451 CCTGTTGTTCTCGTTCGACG 59.224 55.000 0.00 0.00 44.19 5.12
2199 4754 1.215014 GCCAACCAAACTTGCTTCGC 61.215 55.000 0.00 0.00 0.00 4.70
2208 4763 1.205064 CTTGCTTCGCTTGACACGG 59.795 57.895 0.00 0.00 0.00 4.94
2209 4764 1.498865 CTTGCTTCGCTTGACACGGT 61.499 55.000 0.00 0.00 0.00 4.83
2210 4765 1.092921 TTGCTTCGCTTGACACGGTT 61.093 50.000 0.00 0.00 0.00 4.44
2211 4766 1.204312 GCTTCGCTTGACACGGTTC 59.796 57.895 0.00 0.00 0.00 3.62
2212 4767 1.860078 CTTCGCTTGACACGGTTCC 59.140 57.895 0.00 0.00 0.00 3.62
2213 4768 1.886861 CTTCGCTTGACACGGTTCCG 61.887 60.000 9.81 9.81 0.00 4.30
2214 4769 2.632136 TTCGCTTGACACGGTTCCGT 62.632 55.000 11.27 11.27 43.93 4.69
2215 4770 2.241880 CGCTTGACACGGTTCCGTT 61.242 57.895 14.42 6.48 40.97 4.44
2216 4771 1.278637 GCTTGACACGGTTCCGTTG 59.721 57.895 14.42 12.04 40.97 4.10
2217 4772 1.938861 CTTGACACGGTTCCGTTGG 59.061 57.895 14.42 7.12 40.97 3.77
2218 4773 1.503818 CTTGACACGGTTCCGTTGGG 61.504 60.000 14.42 6.42 40.97 4.12
2219 4774 2.109593 GACACGGTTCCGTTGGGT 59.890 61.111 14.42 9.61 40.97 4.51
2220 4775 2.203098 ACACGGTTCCGTTGGGTG 60.203 61.111 14.42 5.77 40.97 4.61
2224 4784 2.539338 CGGTTCCGTTGGGTGTGTG 61.539 63.158 2.82 0.00 33.83 3.82
2383 4946 8.144862 AGGTAAATCTCTCTGAACTGAATTCT 57.855 34.615 7.05 0.00 38.25 2.40
2518 5085 0.321653 GTGCAAGGGACCCTGTACAG 60.322 60.000 15.76 16.34 32.13 2.74
2542 5109 2.218037 CTCTGCTACACTGGCTGCGA 62.218 60.000 0.00 0.00 0.00 5.10
2569 5136 3.382855 CTCTAGCTGTGCTGATGTGATC 58.617 50.000 0.00 0.00 40.10 2.92
2571 5138 2.025589 AGCTGTGCTGATGTGATCTG 57.974 50.000 0.00 0.00 37.57 2.90
2599 5166 3.784412 CGTGCGGTTTGGGCGTAG 61.784 66.667 0.00 0.00 0.00 3.51
2628 5198 3.818961 TTTGCTTTGCGAGAGAAGATG 57.181 42.857 0.00 0.00 0.00 2.90
2635 5205 1.902508 TGCGAGAGAAGATGGAAAGGT 59.097 47.619 0.00 0.00 0.00 3.50
2636 5206 2.093973 TGCGAGAGAAGATGGAAAGGTC 60.094 50.000 0.00 0.00 0.00 3.85
2646 5216 1.893062 GGAAAGGTCCATGCTTGGC 59.107 57.895 13.75 8.80 44.26 4.52
2647 5217 0.613012 GGAAAGGTCCATGCTTGGCT 60.613 55.000 13.75 3.50 44.26 4.75
2736 5316 2.560504 GGCATCATCGTGTTGATGGTA 58.439 47.619 17.90 0.00 46.89 3.25
2743 5323 0.992072 CGTGTTGATGGTAGCGTCAG 59.008 55.000 15.87 2.27 0.00 3.51
2744 5324 1.359848 GTGTTGATGGTAGCGTCAGG 58.640 55.000 15.87 0.00 0.00 3.86
2745 5325 1.067142 GTGTTGATGGTAGCGTCAGGA 60.067 52.381 15.87 5.22 0.00 3.86
2746 5326 1.621317 TGTTGATGGTAGCGTCAGGAA 59.379 47.619 15.87 4.53 0.00 3.36
2747 5327 2.037902 TGTTGATGGTAGCGTCAGGAAA 59.962 45.455 15.87 0.00 0.00 3.13
2748 5328 3.270877 GTTGATGGTAGCGTCAGGAAAT 58.729 45.455 15.87 0.00 0.00 2.17
2857 5462 9.941664 TTAGCACTACTACAGTACGATTTTATC 57.058 33.333 0.00 0.00 34.98 1.75
2858 5463 8.223177 AGCACTACTACAGTACGATTTTATCT 57.777 34.615 0.00 0.00 34.98 1.98
2908 5557 9.530633 CTACTAGGATTTGTAAGCGTTTAAGAT 57.469 33.333 0.00 0.00 0.00 2.40
2926 5575 2.011741 ATGTGATCGCCGCCGTCTAA 62.012 55.000 3.31 0.00 35.54 2.10
3123 5773 3.856508 CGTGTTCGACGGAATGCT 58.143 55.556 0.00 0.00 44.85 3.79
3124 5774 1.702299 CGTGTTCGACGGAATGCTC 59.298 57.895 0.00 0.00 44.85 4.26
3134 5784 3.610821 CGACGGAATGCTCGGTCATTATA 60.611 47.826 12.23 0.00 46.87 0.98
3137 5787 6.222038 ACGGAATGCTCGGTCATTATATAT 57.778 37.500 3.63 0.00 36.85 0.86
3138 5788 6.640518 ACGGAATGCTCGGTCATTATATATT 58.359 36.000 0.00 0.00 36.85 1.28
3139 5789 7.778083 ACGGAATGCTCGGTCATTATATATTA 58.222 34.615 0.00 0.00 36.85 0.98
3140 5790 7.705325 ACGGAATGCTCGGTCATTATATATTAC 59.295 37.037 0.00 0.00 36.85 1.89
3141 5791 7.921214 CGGAATGCTCGGTCATTATATATTACT 59.079 37.037 0.00 0.00 36.85 2.24
3166 5816 9.717844 CTATAACTTTGTACTAAAACAACGACG 57.282 33.333 0.00 0.00 39.02 5.12
3167 5817 5.393902 ACTTTGTACTAAAACAACGACGG 57.606 39.130 0.00 0.00 39.02 4.79
3168 5818 5.108517 ACTTTGTACTAAAACAACGACGGA 58.891 37.500 0.00 0.00 39.02 4.69
3170 5820 6.258507 ACTTTGTACTAAAACAACGACGGATT 59.741 34.615 0.00 0.00 39.02 3.01
3172 5822 6.689178 TGTACTAAAACAACGACGGATTAC 57.311 37.500 0.00 0.00 0.00 1.89
3173 5823 5.633182 TGTACTAAAACAACGACGGATTACC 59.367 40.000 0.00 0.00 0.00 2.85
3174 5824 3.996363 ACTAAAACAACGACGGATTACCC 59.004 43.478 0.00 0.00 0.00 3.69
3186 5836 2.841442 GATTACCCGGAATCCAGAGG 57.159 55.000 0.73 0.00 30.81 3.69
3187 5837 2.326428 GATTACCCGGAATCCAGAGGA 58.674 52.381 0.73 0.00 35.55 3.71
3188 5838 2.257391 TTACCCGGAATCCAGAGGAA 57.743 50.000 0.73 0.00 34.34 3.36
3189 5839 1.789523 TACCCGGAATCCAGAGGAAG 58.210 55.000 0.73 0.00 34.34 3.46
3190 5840 1.147153 CCCGGAATCCAGAGGAAGC 59.853 63.158 0.73 0.00 34.34 3.86
3191 5841 1.626356 CCCGGAATCCAGAGGAAGCA 61.626 60.000 0.73 0.00 34.34 3.91
3192 5842 0.471617 CCGGAATCCAGAGGAAGCAT 59.528 55.000 0.00 0.00 34.34 3.79
3196 5846 3.812053 CGGAATCCAGAGGAAGCATAAAG 59.188 47.826 0.00 0.00 34.34 1.85
3197 5847 4.684485 CGGAATCCAGAGGAAGCATAAAGT 60.684 45.833 0.00 0.00 34.34 2.66
3200 5850 6.183360 GGAATCCAGAGGAAGCATAAAGTTTC 60.183 42.308 0.00 0.00 34.34 2.78
3201 5851 5.505181 TCCAGAGGAAGCATAAAGTTTCT 57.495 39.130 0.00 0.00 37.57 2.52
3203 5853 7.016153 TCCAGAGGAAGCATAAAGTTTCTAA 57.984 36.000 0.00 0.00 37.57 2.10
3204 5854 6.879458 TCCAGAGGAAGCATAAAGTTTCTAAC 59.121 38.462 0.00 0.00 37.57 2.34
3206 5856 7.337942 CCAGAGGAAGCATAAAGTTTCTAACAT 59.662 37.037 0.00 0.00 37.57 2.71
3268 5926 3.411446 CAGTGACTGCAATCAAAGGGTA 58.589 45.455 0.00 0.00 0.00 3.69
3272 5930 5.882557 AGTGACTGCAATCAAAGGGTATTAG 59.117 40.000 0.00 0.00 0.00 1.73
3288 5946 0.322456 TTAGGTCTGTGGGCACATGC 60.322 55.000 0.00 0.00 41.01 4.06
3306 5964 0.729116 GCGGTCATGTCCATGTCAAG 59.271 55.000 9.71 2.17 39.72 3.02
3311 5969 3.568538 GTCATGTCCATGTCAAGTTTGC 58.431 45.455 7.13 0.00 39.72 3.68
3316 5974 0.586319 CCATGTCAAGTTTGCGTCGT 59.414 50.000 0.00 0.00 0.00 4.34
3320 5978 0.381428 GTCAAGTTTGCGTCGTCGTG 60.381 55.000 3.66 0.00 39.49 4.35
3326 5984 0.931702 TTTGCGTCGTCGTGTTCATT 59.068 45.000 3.66 0.00 39.49 2.57
3367 6025 1.867615 CTGCTGCTGCTCTGTCAAC 59.132 57.895 17.00 0.00 40.48 3.18
3368 6026 0.883370 CTGCTGCTGCTCTGTCAACA 60.883 55.000 17.00 0.00 40.48 3.33
3369 6027 0.250597 TGCTGCTGCTCTGTCAACAT 60.251 50.000 17.00 0.00 40.48 2.71
3370 6028 0.168348 GCTGCTGCTCTGTCAACATG 59.832 55.000 8.53 0.00 36.03 3.21
3371 6029 1.520494 CTGCTGCTCTGTCAACATGT 58.480 50.000 0.00 0.00 0.00 3.21
3372 6030 1.197036 CTGCTGCTCTGTCAACATGTG 59.803 52.381 0.00 0.00 0.00 3.21
3373 6031 1.202675 TGCTGCTCTGTCAACATGTGA 60.203 47.619 0.00 0.00 0.00 3.58
3380 6039 1.868997 GTCAACATGTGACGCCCAG 59.131 57.895 0.00 0.00 46.99 4.45
3405 6064 3.535561 CTGCAGTTAACATAGGGTCCAG 58.464 50.000 5.25 0.00 0.00 3.86
3406 6065 2.910319 TGCAGTTAACATAGGGTCCAGT 59.090 45.455 8.61 0.00 0.00 4.00
3411 6075 6.128090 GCAGTTAACATAGGGTCCAGTTTAAC 60.128 42.308 8.61 0.00 0.00 2.01
3415 6079 6.691255 AACATAGGGTCCAGTTTAACAGTA 57.309 37.500 0.00 0.00 0.00 2.74
3416 6080 6.691255 ACATAGGGTCCAGTTTAACAGTAA 57.309 37.500 0.00 0.00 0.00 2.24
3417 6081 7.266905 ACATAGGGTCCAGTTTAACAGTAAT 57.733 36.000 0.00 0.00 0.00 1.89
3452 6116 6.792326 TCTTCGACTAATGTGTATGTACAGG 58.208 40.000 0.33 0.00 36.78 4.00
3453 6117 5.509716 TCGACTAATGTGTATGTACAGGG 57.490 43.478 0.33 0.00 36.78 4.45
3454 6118 4.951715 TCGACTAATGTGTATGTACAGGGT 59.048 41.667 0.33 0.00 36.78 4.34
3455 6119 6.121590 TCGACTAATGTGTATGTACAGGGTA 58.878 40.000 0.33 0.00 36.78 3.69
3456 6120 6.038603 TCGACTAATGTGTATGTACAGGGTAC 59.961 42.308 0.33 0.00 36.78 3.34
3457 6121 6.183360 CGACTAATGTGTATGTACAGGGTACA 60.183 42.308 11.21 11.21 36.78 2.90
3458 6122 7.108841 ACTAATGTGTATGTACAGGGTACAG 57.891 40.000 13.83 0.62 36.78 2.74
3459 6123 6.666546 ACTAATGTGTATGTACAGGGTACAGT 59.333 38.462 13.83 8.61 36.78 3.55
3460 6124 4.794278 TGTGTATGTACAGGGTACAGTG 57.206 45.455 13.83 0.00 36.78 3.66
3461 6125 4.409187 TGTGTATGTACAGGGTACAGTGA 58.591 43.478 13.83 1.17 36.78 3.41
3462 6126 4.833938 TGTGTATGTACAGGGTACAGTGAA 59.166 41.667 13.83 0.00 36.78 3.18
3463 6127 5.047590 TGTGTATGTACAGGGTACAGTGAAG 60.048 44.000 13.83 0.00 36.78 3.02
3464 6128 3.611766 ATGTACAGGGTACAGTGAAGC 57.388 47.619 13.83 0.00 0.00 3.86
3465 6129 2.605257 TGTACAGGGTACAGTGAAGCT 58.395 47.619 5.18 0.00 0.00 3.74
3466 6130 2.969950 TGTACAGGGTACAGTGAAGCTT 59.030 45.455 0.00 0.00 0.00 3.74
3467 6131 2.841442 ACAGGGTACAGTGAAGCTTC 57.159 50.000 19.89 19.89 0.00 3.86
3468 6132 2.330216 ACAGGGTACAGTGAAGCTTCT 58.670 47.619 26.09 9.45 0.00 2.85
3469 6133 2.037772 ACAGGGTACAGTGAAGCTTCTG 59.962 50.000 26.09 19.08 37.65 3.02
3471 6135 2.706190 AGGGTACAGTGAAGCTTCTGTT 59.294 45.455 26.09 9.70 43.39 3.16
3473 6137 3.067833 GGTACAGTGAAGCTTCTGTTCC 58.932 50.000 26.09 23.12 43.39 3.62
3475 6139 2.843701 ACAGTGAAGCTTCTGTTCCAG 58.156 47.619 26.09 11.75 41.33 3.86
3480 6144 3.249559 GTGAAGCTTCTGTTCCAGTGAAG 59.750 47.826 26.09 0.00 39.88 3.02
3487 6151 5.936054 CTTCTGTTCCAGTGAAGCTAATTG 58.064 41.667 0.00 0.00 32.22 2.32
3490 6154 6.240894 TCTGTTCCAGTGAAGCTAATTGATT 58.759 36.000 0.00 0.00 32.61 2.57
3491 6155 7.394016 TCTGTTCCAGTGAAGCTAATTGATTA 58.606 34.615 0.00 0.00 32.61 1.75
3495 6159 8.515414 GTTCCAGTGAAGCTAATTGATTAAGTT 58.485 33.333 0.00 0.00 0.00 2.66
3498 6162 7.965107 CCAGTGAAGCTAATTGATTAAGTTGAC 59.035 37.037 0.00 0.00 0.00 3.18
3532 6222 0.250124 TACTCCGTGGCACTTGGTTG 60.250 55.000 16.72 10.10 0.00 3.77
3536 6226 0.816018 CCGTGGCACTTGGTTGTGTA 60.816 55.000 16.72 0.00 39.89 2.90
3545 6235 2.773087 ACTTGGTTGTGTACAGGGTACA 59.227 45.455 5.18 5.18 0.00 2.90
3554 6244 2.561419 TGTACAGGGTACAGTGAAGCTC 59.439 50.000 5.18 0.00 0.00 4.09
3566 6256 1.376466 GAAGCTCCTGTTCCAGCCA 59.624 57.895 0.00 0.00 36.17 4.75
3611 6301 2.552819 GCGGATGATCGAGGACGGA 61.553 63.158 0.00 0.00 40.21 4.69
4399 7113 0.670854 GTCCGGCTCTGTTGGAACTC 60.671 60.000 0.00 0.00 32.60 3.01
4533 7250 2.223805 GGTCTGGGCTGTTGTTTTTCTG 60.224 50.000 0.00 0.00 0.00 3.02
4623 7359 3.864686 CGACGGCGGGAAAGCATG 61.865 66.667 13.24 0.00 39.27 4.06
4624 7360 2.746277 GACGGCGGGAAAGCATGT 60.746 61.111 13.24 0.00 39.27 3.21
4625 7361 1.448893 GACGGCGGGAAAGCATGTA 60.449 57.895 13.24 0.00 39.27 2.29
4626 7362 1.702491 GACGGCGGGAAAGCATGTAC 61.702 60.000 13.24 0.00 39.27 2.90
4627 7363 2.808958 CGGCGGGAAAGCATGTACG 61.809 63.158 0.00 0.00 39.27 3.67
4628 7364 1.743995 GGCGGGAAAGCATGTACGT 60.744 57.895 0.00 0.00 39.27 3.57
4629 7365 0.460635 GGCGGGAAAGCATGTACGTA 60.461 55.000 0.00 0.00 39.27 3.57
4630 7366 1.361793 GCGGGAAAGCATGTACGTAA 58.638 50.000 0.00 0.00 37.05 3.18
4631 7367 1.061566 GCGGGAAAGCATGTACGTAAC 59.938 52.381 0.00 0.00 37.05 2.50
4632 7368 2.613691 CGGGAAAGCATGTACGTAACT 58.386 47.619 0.00 0.00 0.00 2.24
4633 7369 2.997986 CGGGAAAGCATGTACGTAACTT 59.002 45.455 0.00 0.00 0.00 2.66
4634 7370 3.181524 CGGGAAAGCATGTACGTAACTTG 60.182 47.826 0.00 2.17 36.55 3.16
4635 7371 3.126343 GGGAAAGCATGTACGTAACTTGG 59.874 47.826 0.00 0.00 34.58 3.61
4636 7372 3.425758 GGAAAGCATGTACGTAACTTGGC 60.426 47.826 0.00 0.00 34.58 4.52
4637 7373 1.734163 AGCATGTACGTAACTTGGCC 58.266 50.000 0.00 0.00 34.58 5.36
4638 7374 1.002659 AGCATGTACGTAACTTGGCCA 59.997 47.619 0.00 0.00 34.58 5.36
4639 7375 1.129811 GCATGTACGTAACTTGGCCAC 59.870 52.381 3.88 0.00 34.58 5.01
4640 7376 1.735571 CATGTACGTAACTTGGCCACC 59.264 52.381 3.88 0.00 31.26 4.61
4641 7377 0.319727 TGTACGTAACTTGGCCACCG 60.320 55.000 3.88 5.61 0.00 4.94
4642 7378 0.319813 GTACGTAACTTGGCCACCGT 60.320 55.000 3.88 11.75 0.00 4.83
4643 7379 0.038343 TACGTAACTTGGCCACCGTC 60.038 55.000 3.88 0.00 0.00 4.79
4644 7380 1.005394 CGTAACTTGGCCACCGTCT 60.005 57.895 3.88 0.00 0.00 4.18
4645 7381 0.601841 CGTAACTTGGCCACCGTCTT 60.602 55.000 3.88 0.00 0.00 3.01
4646 7382 1.601166 GTAACTTGGCCACCGTCTTT 58.399 50.000 3.88 0.00 0.00 2.52
4647 7383 1.534163 GTAACTTGGCCACCGTCTTTC 59.466 52.381 3.88 0.00 0.00 2.62
4648 7384 1.164041 AACTTGGCCACCGTCTTTCG 61.164 55.000 3.88 0.00 39.52 3.46
4657 7393 2.342279 CGTCTTTCGGCCCTGACA 59.658 61.111 0.00 0.00 35.71 3.58
4658 7394 2.027625 CGTCTTTCGGCCCTGACAC 61.028 63.158 0.00 0.00 35.71 3.67
4659 7395 1.070786 GTCTTTCGGCCCTGACACA 59.929 57.895 0.00 0.00 0.00 3.72
4660 7396 0.321653 GTCTTTCGGCCCTGACACAT 60.322 55.000 0.00 0.00 0.00 3.21
4661 7397 0.321564 TCTTTCGGCCCTGACACATG 60.322 55.000 0.00 0.00 0.00 3.21
4662 7398 1.303236 TTTCGGCCCTGACACATGG 60.303 57.895 0.00 0.00 0.00 3.66
4663 7399 1.773856 TTTCGGCCCTGACACATGGA 61.774 55.000 0.00 0.00 0.00 3.41
4664 7400 2.124983 CGGCCCTGACACATGGAG 60.125 66.667 0.00 0.00 0.00 3.86
4665 7401 2.659063 CGGCCCTGACACATGGAGA 61.659 63.158 0.00 0.00 0.00 3.71
4666 7402 1.918253 GGCCCTGACACATGGAGAT 59.082 57.895 0.00 0.00 0.00 2.75
4667 7403 1.131638 GGCCCTGACACATGGAGATA 58.868 55.000 0.00 0.00 0.00 1.98
4668 7404 1.701847 GGCCCTGACACATGGAGATAT 59.298 52.381 0.00 0.00 0.00 1.63
4669 7405 2.289945 GGCCCTGACACATGGAGATATC 60.290 54.545 0.00 0.00 0.00 1.63
4670 7406 2.289945 GCCCTGACACATGGAGATATCC 60.290 54.545 0.00 0.00 0.00 2.59
4671 7407 3.246301 CCCTGACACATGGAGATATCCT 58.754 50.000 8.09 0.00 0.00 3.24
4672 7408 3.007723 CCCTGACACATGGAGATATCCTG 59.992 52.174 8.09 6.15 0.00 3.86
4673 7409 3.007723 CCTGACACATGGAGATATCCTGG 59.992 52.174 8.09 2.18 0.00 4.45
4674 7410 3.899980 CTGACACATGGAGATATCCTGGA 59.100 47.826 8.09 0.00 0.00 3.86
4675 7411 3.643320 TGACACATGGAGATATCCTGGAC 59.357 47.826 8.09 0.00 0.00 4.02
4676 7412 2.975489 ACACATGGAGATATCCTGGACC 59.025 50.000 8.09 0.00 0.00 4.46
4677 7413 3.246301 CACATGGAGATATCCTGGACCT 58.754 50.000 8.09 0.00 0.00 3.85
4678 7414 3.007723 CACATGGAGATATCCTGGACCTG 59.992 52.174 8.09 0.00 0.00 4.00
4679 7415 2.405618 TGGAGATATCCTGGACCTGG 57.594 55.000 11.18 11.18 0.00 4.45
4680 7416 1.866269 TGGAGATATCCTGGACCTGGA 59.134 52.381 21.32 21.32 36.01 3.86
4681 7417 2.158249 TGGAGATATCCTGGACCTGGAG 60.158 54.545 23.04 0.00 35.07 3.86
4682 7418 2.110899 GGAGATATCCTGGACCTGGAGA 59.889 54.545 23.04 19.76 35.07 3.71
4683 7419 3.245948 GGAGATATCCTGGACCTGGAGAT 60.246 52.174 23.36 23.36 36.41 2.75
4684 7420 4.424842 GAGATATCCTGGACCTGGAGATT 58.575 47.826 23.81 15.49 34.44 2.40
4685 7421 4.166539 AGATATCCTGGACCTGGAGATTG 58.833 47.826 23.81 0.00 34.44 2.67
4686 7422 2.575921 ATCCTGGACCTGGAGATTGA 57.424 50.000 23.04 1.78 35.07 2.57
4687 7423 1.871418 TCCTGGACCTGGAGATTGAG 58.129 55.000 15.82 0.00 0.00 3.02
4688 7424 1.362584 TCCTGGACCTGGAGATTGAGA 59.637 52.381 15.82 0.00 0.00 3.27
4689 7425 2.191400 CCTGGACCTGGAGATTGAGAA 58.809 52.381 12.01 0.00 0.00 2.87
4690 7426 2.170187 CCTGGACCTGGAGATTGAGAAG 59.830 54.545 12.01 0.00 0.00 2.85
4691 7427 2.836981 CTGGACCTGGAGATTGAGAAGT 59.163 50.000 0.00 0.00 0.00 3.01
4692 7428 4.026744 CTGGACCTGGAGATTGAGAAGTA 58.973 47.826 0.00 0.00 0.00 2.24
4693 7429 3.769844 TGGACCTGGAGATTGAGAAGTAC 59.230 47.826 0.00 0.00 0.00 2.73
4694 7430 4.027437 GGACCTGGAGATTGAGAAGTACT 58.973 47.826 0.00 0.00 0.00 2.73
4695 7431 4.142049 GGACCTGGAGATTGAGAAGTACTG 60.142 50.000 0.00 0.00 0.00 2.74
4696 7432 3.196685 ACCTGGAGATTGAGAAGTACTGC 59.803 47.826 0.00 0.00 0.00 4.40
4697 7433 3.431486 CCTGGAGATTGAGAAGTACTGCC 60.431 52.174 0.00 0.00 0.00 4.85
4698 7434 3.173151 TGGAGATTGAGAAGTACTGCCA 58.827 45.455 0.00 0.00 0.00 4.92
4699 7435 3.582647 TGGAGATTGAGAAGTACTGCCAA 59.417 43.478 0.00 1.49 0.00 4.52
4700 7436 4.041567 TGGAGATTGAGAAGTACTGCCAAA 59.958 41.667 0.00 0.00 0.00 3.28
4701 7437 5.189180 GGAGATTGAGAAGTACTGCCAAAT 58.811 41.667 0.00 0.00 0.00 2.32
4702 7438 6.070251 TGGAGATTGAGAAGTACTGCCAAATA 60.070 38.462 0.00 0.00 0.00 1.40
4703 7439 6.995091 GGAGATTGAGAAGTACTGCCAAATAT 59.005 38.462 0.00 0.00 0.00 1.28
4704 7440 7.041508 GGAGATTGAGAAGTACTGCCAAATATG 60.042 40.741 0.00 0.00 0.00 1.78
4705 7441 7.341805 AGATTGAGAAGTACTGCCAAATATGT 58.658 34.615 0.00 0.00 0.00 2.29
4706 7442 6.741992 TTGAGAAGTACTGCCAAATATGTG 57.258 37.500 0.00 0.00 0.00 3.21
4707 7443 5.804639 TGAGAAGTACTGCCAAATATGTGT 58.195 37.500 0.00 0.00 0.00 3.72
4708 7444 6.941857 TGAGAAGTACTGCCAAATATGTGTA 58.058 36.000 0.00 0.00 0.00 2.90
4709 7445 7.564793 TGAGAAGTACTGCCAAATATGTGTAT 58.435 34.615 0.00 0.00 0.00 2.29
4710 7446 7.495606 TGAGAAGTACTGCCAAATATGTGTATG 59.504 37.037 0.00 0.00 0.00 2.39
4711 7447 7.338710 AGAAGTACTGCCAAATATGTGTATGT 58.661 34.615 0.00 0.00 0.00 2.29
4712 7448 7.495934 AGAAGTACTGCCAAATATGTGTATGTC 59.504 37.037 0.00 0.00 0.00 3.06
4713 7449 6.889198 AGTACTGCCAAATATGTGTATGTCT 58.111 36.000 0.00 0.00 0.00 3.41
4714 7450 8.018537 AGTACTGCCAAATATGTGTATGTCTA 57.981 34.615 0.00 0.00 0.00 2.59
4715 7451 8.482943 AGTACTGCCAAATATGTGTATGTCTAA 58.517 33.333 0.00 0.00 0.00 2.10
4716 7452 7.792374 ACTGCCAAATATGTGTATGTCTAAG 57.208 36.000 0.00 0.00 0.00 2.18
4717 7453 6.767902 ACTGCCAAATATGTGTATGTCTAAGG 59.232 38.462 0.00 0.00 0.00 2.69
4718 7454 6.061441 TGCCAAATATGTGTATGTCTAAGGG 58.939 40.000 0.00 0.00 0.00 3.95
4719 7455 5.048713 GCCAAATATGTGTATGTCTAAGGGC 60.049 44.000 0.00 0.00 0.00 5.19
4720 7456 6.061441 CCAAATATGTGTATGTCTAAGGGCA 58.939 40.000 0.00 0.00 0.00 5.36
4721 7457 6.716628 CCAAATATGTGTATGTCTAAGGGCAT 59.283 38.462 0.00 0.00 0.00 4.40
4726 7462 5.610398 TGTGTATGTCTAAGGGCATGTATG 58.390 41.667 0.00 0.00 0.00 2.39
4763 7500 2.429610 GGAGTTGGTAGCCTGATACGAA 59.570 50.000 0.00 0.00 0.00 3.85
4767 7504 5.598769 AGTTGGTAGCCTGATACGAATTAC 58.401 41.667 0.00 0.00 0.00 1.89
4807 7553 2.121506 ACCTCCCACCACCACCAT 60.122 61.111 0.00 0.00 0.00 3.55
4818 7564 3.321682 CACCACCACCATCAACTGATTTT 59.678 43.478 0.00 0.00 31.21 1.82
4965 7711 9.784531 CACACCATATATTTGAGATTACCTTCT 57.215 33.333 0.00 0.00 0.00 2.85
5072 7821 8.746751 CGCACTATGTCATTATTATTATCTCCG 58.253 37.037 0.00 0.00 0.00 4.63
5137 7886 8.927675 AACATATCTTTTACTTGTGGGTGTAA 57.072 30.769 0.00 0.00 0.00 2.41
5138 7887 8.331730 ACATATCTTTTACTTGTGGGTGTAAC 57.668 34.615 0.00 0.00 0.00 2.50
5156 7905 4.063967 CATCCGCGCGCCCCTATA 62.064 66.667 27.36 4.73 0.00 1.31
5160 7909 3.362797 CGCGCGCCCCTATAGAGA 61.363 66.667 27.72 0.00 0.00 3.10
5236 7985 0.179111 CTCGAGAATGCCAAGGCGTA 60.179 55.000 6.58 0.00 45.51 4.42
5254 8003 2.937591 GTACATCACGACGTCAAGGAA 58.062 47.619 17.16 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.342174 TCCGCTTGGTCTCTACGTTTT 59.658 47.619 0.00 0.00 0.00 2.43
14 15 0.664761 CAGCAATATGGTCCGCTTGG 59.335 55.000 0.00 0.00 30.72 3.61
17 18 0.758734 TAGCAGCAATATGGTCCGCT 59.241 50.000 0.00 0.00 32.90 5.52
107 108 1.743252 GGTGGCTAGCTCAGTGTGC 60.743 63.158 15.72 9.16 0.00 4.57
112 113 2.906458 CTGGGGTGGCTAGCTCAG 59.094 66.667 15.11 15.11 45.52 3.35
126 127 2.218115 TTTAATCCGGGGTGGGCTGG 62.218 60.000 0.00 0.00 38.76 4.85
128 129 1.613061 CTTTAATCCGGGGTGGGCT 59.387 57.895 0.00 0.00 38.76 5.19
129 130 2.125326 GCTTTAATCCGGGGTGGGC 61.125 63.158 0.00 0.00 38.76 5.36
141 142 1.098129 TATGCATGGCGCGGCTTTAA 61.098 50.000 33.23 17.10 46.97 1.52
203 210 2.294078 GGCAGTAGCAGGTGGGACT 61.294 63.158 0.00 0.00 44.61 3.85
204 211 2.269241 GGCAGTAGCAGGTGGGAC 59.731 66.667 0.00 0.00 44.61 4.46
215 222 3.013921 GGAATTCAATTCGGTGGCAGTA 58.986 45.455 7.93 0.00 40.17 2.74
216 223 1.818674 GGAATTCAATTCGGTGGCAGT 59.181 47.619 7.93 0.00 40.17 4.40
265 280 7.786030 TGATTGGTTTTTGTTTGATTCCTACA 58.214 30.769 0.00 0.00 0.00 2.74
294 2585 1.476891 TCTCGGGTCCTTCATTTCTCG 59.523 52.381 0.00 0.00 0.00 4.04
301 2592 0.974383 GTTTCCTCTCGGGTCCTTCA 59.026 55.000 0.00 0.00 36.25 3.02
305 2596 0.669625 CAACGTTTCCTCTCGGGTCC 60.670 60.000 0.00 0.00 36.25 4.46
405 2696 3.790437 ATGCGCTGGGCTGCTAGT 61.790 61.111 17.81 0.00 44.05 2.57
406 2697 3.277602 CATGCGCTGGGCTGCTAG 61.278 66.667 17.81 0.00 44.05 3.42
407 2698 4.100084 ACATGCGCTGGGCTGCTA 62.100 61.111 17.81 0.00 44.05 3.49
410 2701 2.436469 TACACATGCGCTGGGCTG 60.436 61.111 17.81 14.56 44.05 4.85
411 2702 1.613317 TAGTACACATGCGCTGGGCT 61.613 55.000 17.81 4.10 44.05 5.19
412 2703 1.153449 TAGTACACATGCGCTGGGC 60.153 57.895 9.73 10.06 43.96 5.36
413 2704 1.154205 GCTAGTACACATGCGCTGGG 61.154 60.000 9.73 8.35 0.00 4.45
414 2705 0.460109 TGCTAGTACACATGCGCTGG 60.460 55.000 9.73 2.61 0.00 4.85
415 2706 0.647410 GTGCTAGTACACATGCGCTG 59.353 55.000 9.73 7.16 40.40 5.18
416 2707 0.532573 AGTGCTAGTACACATGCGCT 59.467 50.000 13.75 2.80 43.23 5.92
417 2708 1.852895 GTAGTGCTAGTACACATGCGC 59.147 52.381 13.75 0.00 43.23 6.09
418 2709 2.159296 TGGTAGTGCTAGTACACATGCG 60.159 50.000 13.75 0.00 43.23 4.73
431 2722 4.705023 ACCCAAGAAAACATATGGTAGTGC 59.295 41.667 7.80 0.00 0.00 4.40
481 2783 2.607892 GGACTGGCACGCAGACAAC 61.608 63.158 0.00 0.00 0.00 3.32
484 2786 2.279502 TATCGGACTGGCACGCAGAC 62.280 60.000 0.00 0.00 0.00 3.51
485 2787 2.004808 CTATCGGACTGGCACGCAGA 62.005 60.000 0.00 0.00 0.00 4.26
486 2788 1.589993 CTATCGGACTGGCACGCAG 60.590 63.158 0.00 0.00 0.00 5.18
487 2789 1.600511 TTCTATCGGACTGGCACGCA 61.601 55.000 0.00 0.00 0.00 5.24
488 2790 0.459585 TTTCTATCGGACTGGCACGC 60.460 55.000 0.00 0.00 0.00 5.34
489 2791 1.659098 GTTTTCTATCGGACTGGCACG 59.341 52.381 0.00 0.00 0.00 5.34
756 3062 3.649277 ATGAACCGCTCGCTCGCTT 62.649 57.895 0.00 0.00 0.00 4.68
759 3065 1.475441 GAAGATGAACCGCTCGCTCG 61.475 60.000 0.00 0.00 0.00 5.03
775 3081 3.181549 CGTGCTCGCATCGTATAATGAAG 60.182 47.826 0.00 0.00 0.00 3.02
776 3082 2.724174 CGTGCTCGCATCGTATAATGAA 59.276 45.455 0.00 0.00 0.00 2.57
778 3084 1.386748 CCGTGCTCGCATCGTATAATG 59.613 52.381 1.89 0.00 35.54 1.90
779 3085 1.668919 CCCGTGCTCGCATCGTATAAT 60.669 52.381 1.89 0.00 35.54 1.28
780 3086 0.318360 CCCGTGCTCGCATCGTATAA 60.318 55.000 1.89 0.00 35.54 0.98
781 3087 1.284715 CCCGTGCTCGCATCGTATA 59.715 57.895 1.89 0.00 35.54 1.47
782 3088 2.027605 CCCGTGCTCGCATCGTAT 59.972 61.111 1.89 0.00 35.54 3.06
783 3089 4.201679 CCCCGTGCTCGCATCGTA 62.202 66.667 1.89 0.00 35.54 3.43
838 3144 1.078426 CACCTGGTAGGGCGGAAAG 60.078 63.158 0.00 0.00 40.58 2.62
849 3155 3.531814 AGGATTAAATTAGGCCACCTGGT 59.468 43.478 5.01 0.00 34.61 4.00
878 3184 3.208592 ACACTGGAGGGGAGGGGA 61.209 66.667 0.00 0.00 0.00 4.81
879 3185 3.011517 CACACTGGAGGGGAGGGG 61.012 72.222 0.00 0.00 0.00 4.79
880 3186 3.721706 GCACACTGGAGGGGAGGG 61.722 72.222 0.00 0.00 0.00 4.30
996 3322 1.525535 GCGCCTGCTCTCCATCAAT 60.526 57.895 0.00 0.00 38.39 2.57
1030 3362 3.292159 CACCAGCAGCAGCAGCAA 61.292 61.111 12.92 0.00 45.49 3.91
1046 3378 4.758251 CCACCATGAGCGTCGCCA 62.758 66.667 14.86 12.13 0.00 5.69
1473 3838 1.226746 GCAGACGGCAGTTACTTGTT 58.773 50.000 0.00 0.00 43.97 2.83
1498 3863 3.716006 CTGTTCACGCAGCGGTGG 61.716 66.667 21.15 8.44 38.46 4.61
1499 3864 2.661537 TCTGTTCACGCAGCGGTG 60.662 61.111 21.15 10.98 39.29 4.94
1500 3865 2.661866 GTCTGTTCACGCAGCGGT 60.662 61.111 21.15 1.43 36.49 5.68
1547 3912 1.601759 GGCACTCAGAGGCTGCAAA 60.602 57.895 13.54 0.00 32.20 3.68
1597 3963 4.021102 AGAAACTGTGTGGAACCTATGG 57.979 45.455 0.00 0.00 34.36 2.74
1598 3964 5.794894 AGTAGAAACTGTGTGGAACCTATG 58.205 41.667 0.00 0.00 33.57 2.23
1599 3965 5.046520 GGAGTAGAAACTGTGTGGAACCTAT 60.047 44.000 0.00 0.00 35.56 2.57
1651 4141 0.110486 CCAAGTGGCCACAACCTACT 59.890 55.000 36.39 12.43 0.00 2.57
1652 4142 0.179001 ACCAAGTGGCCACAACCTAC 60.179 55.000 36.39 9.07 39.32 3.18
1653 4143 0.553819 AACCAAGTGGCCACAACCTA 59.446 50.000 36.39 0.00 39.32 3.08
1654 4144 0.553819 TAACCAAGTGGCCACAACCT 59.446 50.000 36.39 18.81 39.32 3.50
1655 4145 1.404843 TTAACCAAGTGGCCACAACC 58.595 50.000 36.39 11.15 39.32 3.77
1656 4146 2.288763 CCATTAACCAAGTGGCCACAAC 60.289 50.000 36.39 11.57 39.32 3.32
1710 4211 4.031991 GTCGTTTTTGTTTTTGTAGTGGGC 59.968 41.667 0.00 0.00 0.00 5.36
1727 4228 7.226128 CCCAAACTAGAAGAAAACTAGTCGTTT 59.774 37.037 0.00 0.00 46.29 3.60
1731 4232 5.411977 GGCCCAAACTAGAAGAAAACTAGTC 59.588 44.000 0.00 0.00 46.29 2.59
1733 4234 5.561679 AGGCCCAAACTAGAAGAAAACTAG 58.438 41.667 0.00 0.00 41.87 2.57
1734 4235 5.578157 AGGCCCAAACTAGAAGAAAACTA 57.422 39.130 0.00 0.00 0.00 2.24
1782 4283 2.303175 GACCCAGCAACCACAAGTTAA 58.697 47.619 0.00 0.00 36.18 2.01
1805 4306 8.443160 TGTTTCTCTTTTATCTAAGTGCAATCG 58.557 33.333 0.00 0.00 0.00 3.34
1870 4371 3.896133 GCGATGTCCTACCGGCGA 61.896 66.667 9.30 0.00 0.00 5.54
1894 4395 1.394227 GACGAACTCGATCGAGACAGT 59.606 52.381 42.97 34.91 45.48 3.55
1896 4397 1.659601 GAGACGAACTCGATCGAGACA 59.340 52.381 42.97 12.98 45.48 3.41
1906 4407 3.060205 GCACAAGTTTCTGAGACGAACTC 60.060 47.826 0.43 0.00 45.11 3.01
1908 4409 2.607635 TGCACAAGTTTCTGAGACGAAC 59.392 45.455 0.00 0.00 0.00 3.95
1909 4410 2.899976 TGCACAAGTTTCTGAGACGAA 58.100 42.857 0.00 0.00 0.00 3.85
1910 4411 2.595124 TGCACAAGTTTCTGAGACGA 57.405 45.000 0.00 0.00 0.00 4.20
1911 4412 2.545526 ACATGCACAAGTTTCTGAGACG 59.454 45.455 0.00 0.00 0.00 4.18
1912 4413 4.558538 AACATGCACAAGTTTCTGAGAC 57.441 40.909 0.00 0.00 0.00 3.36
1913 4414 5.125257 TGAAAACATGCACAAGTTTCTGAGA 59.875 36.000 12.42 0.00 36.98 3.27
1914 4415 5.342433 TGAAAACATGCACAAGTTTCTGAG 58.658 37.500 12.42 0.00 36.98 3.35
1915 4416 5.321959 TGAAAACATGCACAAGTTTCTGA 57.678 34.783 12.42 0.71 36.98 3.27
1916 4417 5.749588 TGATGAAAACATGCACAAGTTTCTG 59.250 36.000 12.42 0.00 36.98 3.02
1917 4418 5.904941 TGATGAAAACATGCACAAGTTTCT 58.095 33.333 12.42 5.44 36.98 2.52
1921 4428 5.242171 TCTGATGATGAAAACATGCACAAGT 59.758 36.000 0.00 0.00 25.26 3.16
1923 4430 5.474189 TCTCTGATGATGAAAACATGCACAA 59.526 36.000 0.00 0.00 25.26 3.33
1925 4432 5.353400 TCTCTCTGATGATGAAAACATGCAC 59.647 40.000 0.00 0.00 25.26 4.57
1929 4436 8.894731 CATCTTTCTCTCTGATGATGAAAACAT 58.105 33.333 0.00 0.00 39.72 2.71
1941 4448 8.455903 AAACAAATTGTCATCTTTCTCTCTGA 57.544 30.769 0.00 0.00 0.00 3.27
1942 4449 9.525409 AAAAACAAATTGTCATCTTTCTCTCTG 57.475 29.630 0.00 0.00 0.00 3.35
1960 4467 7.255346 GGAACGAGGAGGAAGATTAAAAACAAA 60.255 37.037 0.00 0.00 0.00 2.83
1962 4469 5.704053 GGAACGAGGAGGAAGATTAAAAACA 59.296 40.000 0.00 0.00 0.00 2.83
2114 4628 0.729690 GGCGATGAAAAGCAGGAGAC 59.270 55.000 0.00 0.00 34.54 3.36
2208 4763 1.720694 CCACACACACCCAACGGAAC 61.721 60.000 0.00 0.00 0.00 3.62
2209 4764 1.452289 CCACACACACCCAACGGAA 60.452 57.895 0.00 0.00 0.00 4.30
2210 4765 2.190843 CCACACACACCCAACGGA 59.809 61.111 0.00 0.00 0.00 4.69
2211 4766 1.751162 AACCACACACACCCAACGG 60.751 57.895 0.00 0.00 0.00 4.44
2212 4767 1.431440 CAACCACACACACCCAACG 59.569 57.895 0.00 0.00 0.00 4.10
2213 4768 1.140804 GCAACCACACACACCCAAC 59.859 57.895 0.00 0.00 0.00 3.77
2214 4769 1.304464 TGCAACCACACACACCCAA 60.304 52.632 0.00 0.00 0.00 4.12
2215 4770 1.752310 CTGCAACCACACACACCCA 60.752 57.895 0.00 0.00 0.00 4.51
2216 4771 2.489275 CCTGCAACCACACACACCC 61.489 63.158 0.00 0.00 0.00 4.61
2217 4772 1.447317 CTCCTGCAACCACACACACC 61.447 60.000 0.00 0.00 0.00 4.16
2218 4773 1.447317 CCTCCTGCAACCACACACAC 61.447 60.000 0.00 0.00 0.00 3.82
2219 4774 1.152984 CCTCCTGCAACCACACACA 60.153 57.895 0.00 0.00 0.00 3.72
2220 4775 2.555547 GCCTCCTGCAACCACACAC 61.556 63.158 0.00 0.00 40.77 3.82
2224 4784 4.643387 ACCGCCTCCTGCAACCAC 62.643 66.667 0.00 0.00 41.33 4.16
2364 4924 7.421087 TGATGAGAATTCAGTTCAGAGAGAT 57.579 36.000 8.44 0.00 39.39 2.75
2383 4946 1.685517 CTAGCTAGCAGCCACTGATGA 59.314 52.381 18.83 0.00 43.77 2.92
2407 4970 3.545703 CCACTCAAAGGTGAAGTTCAGT 58.454 45.455 5.62 0.00 39.34 3.41
2518 5085 1.901085 CCAGTGTAGCAGAGGGACC 59.099 63.158 0.00 0.00 0.00 4.46
2560 5127 2.188062 TTGCACTGCAGATCACATCA 57.812 45.000 23.35 4.11 40.61 3.07
2599 5166 3.312421 TCTCGCAAAGCAAATATAGTGCC 59.688 43.478 7.51 0.00 43.27 5.01
2606 5176 4.333649 CCATCTTCTCTCGCAAAGCAAATA 59.666 41.667 0.00 0.00 0.00 1.40
2607 5177 3.128242 CCATCTTCTCTCGCAAAGCAAAT 59.872 43.478 0.00 0.00 0.00 2.32
2644 5214 6.428159 ACGGTCTTATGATATGATTTTCAGCC 59.572 38.462 0.00 0.00 0.00 4.85
2645 5215 7.426929 ACGGTCTTATGATATGATTTTCAGC 57.573 36.000 0.00 0.00 0.00 4.26
2646 5216 7.382488 ACGACGGTCTTATGATATGATTTTCAG 59.618 37.037 6.57 0.00 0.00 3.02
2647 5217 7.169140 CACGACGGTCTTATGATATGATTTTCA 59.831 37.037 6.57 0.00 0.00 2.69
2736 5316 1.448540 CGGCTCATTTCCTGACGCT 60.449 57.895 0.00 0.00 32.17 5.07
2743 5323 2.513897 CCCGGACGGCTCATTTCC 60.514 66.667 0.73 0.00 0.00 3.13
2744 5324 1.814169 GTCCCGGACGGCTCATTTC 60.814 63.158 0.73 0.00 0.00 2.17
2745 5325 2.119484 TTGTCCCGGACGGCTCATTT 62.119 55.000 13.02 0.00 34.95 2.32
2746 5326 2.119484 TTTGTCCCGGACGGCTCATT 62.119 55.000 13.02 0.00 34.95 2.57
2747 5327 2.589157 TTTGTCCCGGACGGCTCAT 61.589 57.895 13.02 0.00 34.95 2.90
2748 5328 3.235481 TTTGTCCCGGACGGCTCA 61.235 61.111 13.02 3.75 34.95 4.26
2831 5411 9.941664 GATAAAATCGTACTGTAGTAGTGCTAA 57.058 33.333 0.00 0.00 40.65 3.09
2832 5412 9.334947 AGATAAAATCGTACTGTAGTAGTGCTA 57.665 33.333 0.00 0.00 40.65 3.49
2833 5413 8.223177 AGATAAAATCGTACTGTAGTAGTGCT 57.777 34.615 0.00 0.00 40.65 4.40
2863 5512 9.915629 CCTAGTAGTCGCTAATCATTCTTAAAT 57.084 33.333 0.00 0.00 0.00 1.40
2880 5529 8.693542 TTAAACGCTTACAAATCCTAGTAGTC 57.306 34.615 0.00 0.00 0.00 2.59
2883 5532 9.309516 CATCTTAAACGCTTACAAATCCTAGTA 57.690 33.333 0.00 0.00 0.00 1.82
2884 5533 7.822822 ACATCTTAAACGCTTACAAATCCTAGT 59.177 33.333 0.00 0.00 0.00 2.57
2885 5534 8.116753 CACATCTTAAACGCTTACAAATCCTAG 58.883 37.037 0.00 0.00 0.00 3.02
2908 5557 2.011741 ATTAGACGGCGGCGATCACA 62.012 55.000 38.93 19.71 0.00 3.58
2926 5575 1.407437 CCCTGGCGACTTTTGCTAGAT 60.407 52.381 0.00 0.00 42.88 1.98
2997 5646 2.704725 TCAAGCCGAACAAATTCTGC 57.295 45.000 0.00 0.00 43.35 4.26
3140 5790 9.717844 CGTCGTTGTTTTAGTACAAAGTTATAG 57.282 33.333 0.00 0.00 39.54 1.31
3141 5791 8.698854 CCGTCGTTGTTTTAGTACAAAGTTATA 58.301 33.333 0.00 0.00 39.54 0.98
3142 5792 7.437862 TCCGTCGTTGTTTTAGTACAAAGTTAT 59.562 33.333 0.00 0.00 39.54 1.89
3145 5795 5.108517 TCCGTCGTTGTTTTAGTACAAAGT 58.891 37.500 0.00 0.00 39.54 2.66
3146 5796 5.640218 TCCGTCGTTGTTTTAGTACAAAG 57.360 39.130 0.00 0.00 39.54 2.77
3147 5797 6.601741 AATCCGTCGTTGTTTTAGTACAAA 57.398 33.333 0.00 0.00 39.54 2.83
3149 5799 5.633182 GGTAATCCGTCGTTGTTTTAGTACA 59.367 40.000 0.00 0.00 0.00 2.90
3150 5800 5.062183 GGGTAATCCGTCGTTGTTTTAGTAC 59.938 44.000 0.00 0.00 33.83 2.73
3151 5801 5.167845 GGGTAATCCGTCGTTGTTTTAGTA 58.832 41.667 0.00 0.00 33.83 1.82
3153 5803 4.588805 GGGTAATCCGTCGTTGTTTTAG 57.411 45.455 0.00 0.00 33.83 1.85
3167 5817 2.326428 TCCTCTGGATTCCGGGTAATC 58.674 52.381 11.69 4.25 35.51 1.75
3168 5818 2.489528 TCCTCTGGATTCCGGGTAAT 57.510 50.000 11.69 0.00 0.00 1.89
3170 5820 1.789523 CTTCCTCTGGATTCCGGGTA 58.210 55.000 11.69 0.89 0.00 3.69
3172 5822 1.147153 GCTTCCTCTGGATTCCGGG 59.853 63.158 11.69 7.19 0.00 5.73
3173 5823 0.471617 ATGCTTCCTCTGGATTCCGG 59.528 55.000 5.04 5.04 0.00 5.14
3174 5824 3.475566 TTATGCTTCCTCTGGATTCCG 57.524 47.619 0.00 0.00 0.00 4.30
3175 5825 4.786425 ACTTTATGCTTCCTCTGGATTCC 58.214 43.478 0.00 0.00 0.00 3.01
3176 5826 6.601217 AGAAACTTTATGCTTCCTCTGGATTC 59.399 38.462 0.00 0.00 0.00 2.52
3177 5827 6.488715 AGAAACTTTATGCTTCCTCTGGATT 58.511 36.000 0.00 0.00 0.00 3.01
3178 5828 6.072199 AGAAACTTTATGCTTCCTCTGGAT 57.928 37.500 0.00 0.00 0.00 3.41
3180 5830 6.655003 TGTTAGAAACTTTATGCTTCCTCTGG 59.345 38.462 0.00 0.00 0.00 3.86
3181 5831 7.672983 TGTTAGAAACTTTATGCTTCCTCTG 57.327 36.000 0.00 0.00 0.00 3.35
3182 5832 8.870075 AATGTTAGAAACTTTATGCTTCCTCT 57.130 30.769 0.00 0.00 0.00 3.69
3216 5873 8.408601 AGTGATGGTAATTGACAATAATTCAGC 58.591 33.333 0.00 2.30 32.79 4.26
3268 5926 1.683011 GCATGTGCCCACAGACCTAAT 60.683 52.381 7.24 0.00 45.48 1.73
3272 5930 3.434319 CGCATGTGCCCACAGACC 61.434 66.667 7.24 0.00 45.48 3.85
3288 5946 2.099141 ACTTGACATGGACATGACCG 57.901 50.000 18.38 8.84 41.20 4.79
3306 5964 0.231279 ATGAACACGACGACGCAAAC 59.769 50.000 7.30 0.00 43.96 2.93
3311 5969 2.727798 AGGTTTAATGAACACGACGACG 59.272 45.455 5.58 5.58 40.13 5.12
3316 5974 4.345859 AGGACAGGTTTAATGAACACGA 57.654 40.909 0.00 0.00 40.13 4.35
3320 5978 8.456471 GGTGTAATAAGGACAGGTTTAATGAAC 58.544 37.037 0.00 0.00 37.53 3.18
3326 5984 5.249852 AGCTGGTGTAATAAGGACAGGTTTA 59.750 40.000 0.00 0.00 33.44 2.01
3367 6025 2.436646 GGTCCTGGGCGTCACATG 60.437 66.667 0.00 0.00 0.00 3.21
3368 6026 2.607750 AGGTCCTGGGCGTCACAT 60.608 61.111 0.00 0.00 0.00 3.21
3369 6027 3.625897 CAGGTCCTGGGCGTCACA 61.626 66.667 11.46 0.00 0.00 3.58
3372 6030 4.767255 CTGCAGGTCCTGGGCGTC 62.767 72.222 20.72 3.81 31.21 5.19
3374 6032 2.463589 TTAACTGCAGGTCCTGGGCG 62.464 60.000 20.72 6.31 31.21 6.13
3376 6034 0.400213 TGTTAACTGCAGGTCCTGGG 59.600 55.000 20.72 0.00 31.21 4.45
3380 6039 2.238898 ACCCTATGTTAACTGCAGGTCC 59.761 50.000 19.93 6.53 0.00 4.46
3429 6093 5.977725 CCCTGTACATACACATTAGTCGAAG 59.022 44.000 0.00 0.00 31.93 3.79
3430 6094 5.419788 ACCCTGTACATACACATTAGTCGAA 59.580 40.000 0.00 0.00 31.93 3.71
3431 6095 4.951715 ACCCTGTACATACACATTAGTCGA 59.048 41.667 0.00 0.00 31.93 4.20
3432 6096 5.258456 ACCCTGTACATACACATTAGTCG 57.742 43.478 0.00 0.00 31.93 4.18
3435 6099 6.978659 CACTGTACCCTGTACATACACATTAG 59.021 42.308 7.47 0.00 31.93 1.73
3436 6100 6.664384 TCACTGTACCCTGTACATACACATTA 59.336 38.462 7.47 0.00 31.93 1.90
3439 6103 4.409187 TCACTGTACCCTGTACATACACA 58.591 43.478 7.47 0.00 31.93 3.72
3440 6104 5.395682 TTCACTGTACCCTGTACATACAC 57.604 43.478 7.47 0.00 31.93 2.90
3441 6105 4.081862 GCTTCACTGTACCCTGTACATACA 60.082 45.833 7.47 7.42 34.56 2.29
3442 6106 4.159879 AGCTTCACTGTACCCTGTACATAC 59.840 45.833 7.47 0.00 0.00 2.39
3443 6107 4.350245 AGCTTCACTGTACCCTGTACATA 58.650 43.478 7.47 0.00 0.00 2.29
3444 6108 3.173965 AGCTTCACTGTACCCTGTACAT 58.826 45.455 7.47 0.00 0.00 2.29
3445 6109 2.605257 AGCTTCACTGTACCCTGTACA 58.395 47.619 6.88 6.88 0.00 2.90
3446 6110 3.258622 AGAAGCTTCACTGTACCCTGTAC 59.741 47.826 27.57 0.00 0.00 2.90
3447 6111 3.258372 CAGAAGCTTCACTGTACCCTGTA 59.742 47.826 27.57 0.00 0.00 2.74
3448 6112 2.037772 CAGAAGCTTCACTGTACCCTGT 59.962 50.000 27.57 0.00 0.00 4.00
3449 6113 2.037772 ACAGAAGCTTCACTGTACCCTG 59.962 50.000 27.57 15.61 44.06 4.45
3450 6114 2.330216 ACAGAAGCTTCACTGTACCCT 58.670 47.619 27.57 1.05 44.06 4.34
3451 6115 2.841442 ACAGAAGCTTCACTGTACCC 57.159 50.000 27.57 0.00 44.06 3.69
3452 6116 3.067833 GGAACAGAAGCTTCACTGTACC 58.932 50.000 27.57 17.48 44.94 3.34
3453 6117 3.728845 TGGAACAGAAGCTTCACTGTAC 58.271 45.455 27.57 18.56 44.94 2.90
3468 6132 7.665559 ACTTAATCAATTAGCTTCACTGGAACA 59.334 33.333 0.00 0.00 0.00 3.18
3469 6133 8.045176 ACTTAATCAATTAGCTTCACTGGAAC 57.955 34.615 0.00 0.00 0.00 3.62
3471 6135 7.882791 TCAACTTAATCAATTAGCTTCACTGGA 59.117 33.333 0.00 0.00 0.00 3.86
3473 6137 8.725148 AGTCAACTTAATCAATTAGCTTCACTG 58.275 33.333 0.00 0.00 0.00 3.66
3475 6139 8.721478 TCAGTCAACTTAATCAATTAGCTTCAC 58.279 33.333 0.00 0.00 0.00 3.18
3480 6144 9.548208 GTTTCTCAGTCAACTTAATCAATTAGC 57.452 33.333 0.00 0.00 0.00 3.09
3495 6159 8.188799 CACGGAGTATAATTAGTTTCTCAGTCA 58.811 37.037 9.70 0.00 41.61 3.41
3498 6162 6.421202 GCCACGGAGTATAATTAGTTTCTCAG 59.579 42.308 0.00 0.74 41.61 3.35
3512 6202 0.690762 AACCAAGTGCCACGGAGTAT 59.309 50.000 0.00 0.00 41.61 2.12
3532 6222 2.299297 AGCTTCACTGTACCCTGTACAC 59.701 50.000 3.07 0.00 0.00 2.90
3536 6226 0.977395 GGAGCTTCACTGTACCCTGT 59.023 55.000 0.00 0.00 0.00 4.00
4001 6700 2.672760 GCTCTGGTTCTCGAAGAAGTCC 60.673 54.545 0.00 0.00 34.42 3.85
4292 6991 2.439701 CCGGCGAGGTACCTCTCA 60.440 66.667 33.70 0.00 40.69 3.27
4336 7035 2.434359 CTCCTGTTCCGGCGAACC 60.434 66.667 9.30 0.00 46.67 3.62
4399 7113 2.278596 AACGCCGGTCGATCGATG 60.279 61.111 21.90 16.40 41.67 3.84
4486 7200 1.238625 TGATCGGCCGAAAAACCACC 61.239 55.000 34.66 13.57 0.00 4.61
4619 7355 1.129811 GTGGCCAAGTTACGTACATGC 59.870 52.381 7.24 0.00 0.00 4.06
4623 7359 0.319813 ACGGTGGCCAAGTTACGTAC 60.320 55.000 7.24 0.00 32.30 3.67
4624 7360 0.038343 GACGGTGGCCAAGTTACGTA 60.038 55.000 7.24 0.00 34.43 3.57
4625 7361 1.301165 GACGGTGGCCAAGTTACGT 60.301 57.895 7.24 13.81 37.26 3.57
4626 7362 0.601841 AAGACGGTGGCCAAGTTACG 60.602 55.000 7.24 10.32 0.00 3.18
4627 7363 1.534163 GAAAGACGGTGGCCAAGTTAC 59.466 52.381 7.24 0.00 0.00 2.50
4628 7364 1.874739 CGAAAGACGGTGGCCAAGTTA 60.875 52.381 7.24 0.00 38.46 2.24
4629 7365 1.164041 CGAAAGACGGTGGCCAAGTT 61.164 55.000 7.24 0.00 38.46 2.66
4630 7366 1.597027 CGAAAGACGGTGGCCAAGT 60.597 57.895 7.24 11.65 38.46 3.16
4631 7367 3.253955 CGAAAGACGGTGGCCAAG 58.746 61.111 7.24 7.62 38.46 3.61
4640 7376 2.027625 GTGTCAGGGCCGAAAGACG 61.028 63.158 13.79 0.00 42.18 4.18
4641 7377 0.321653 ATGTGTCAGGGCCGAAAGAC 60.322 55.000 12.44 12.44 0.00 3.01
4642 7378 0.321564 CATGTGTCAGGGCCGAAAGA 60.322 55.000 0.00 0.00 0.00 2.52
4643 7379 1.308069 CCATGTGTCAGGGCCGAAAG 61.308 60.000 0.00 0.00 0.00 2.62
4644 7380 1.303236 CCATGTGTCAGGGCCGAAA 60.303 57.895 0.00 0.00 0.00 3.46
4645 7381 2.184020 CTCCATGTGTCAGGGCCGAA 62.184 60.000 0.00 0.00 35.05 4.30
4646 7382 2.606213 TCCATGTGTCAGGGCCGA 60.606 61.111 0.00 0.00 35.05 5.54
4647 7383 1.976132 ATCTCCATGTGTCAGGGCCG 61.976 60.000 0.00 0.00 35.05 6.13
4648 7384 1.131638 TATCTCCATGTGTCAGGGCC 58.868 55.000 0.00 0.00 35.05 5.80
4649 7385 2.289945 GGATATCTCCATGTGTCAGGGC 60.290 54.545 2.05 0.00 41.64 5.19
4650 7386 3.007723 CAGGATATCTCCATGTGTCAGGG 59.992 52.174 2.05 0.00 44.79 4.45
4651 7387 3.007723 CCAGGATATCTCCATGTGTCAGG 59.992 52.174 2.05 0.00 44.79 3.86
4652 7388 3.899980 TCCAGGATATCTCCATGTGTCAG 59.100 47.826 2.05 0.00 44.79 3.51
4653 7389 3.643320 GTCCAGGATATCTCCATGTGTCA 59.357 47.826 2.05 0.00 44.79 3.58
4654 7390 3.007398 GGTCCAGGATATCTCCATGTGTC 59.993 52.174 2.05 0.00 44.79 3.67
4655 7391 2.975489 GGTCCAGGATATCTCCATGTGT 59.025 50.000 2.05 0.00 44.79 3.72
4656 7392 3.007723 CAGGTCCAGGATATCTCCATGTG 59.992 52.174 2.05 0.00 44.79 3.21
4657 7393 3.246301 CAGGTCCAGGATATCTCCATGT 58.754 50.000 2.05 0.00 44.79 3.21
4658 7394 2.570752 CCAGGTCCAGGATATCTCCATG 59.429 54.545 2.05 0.00 44.79 3.66
4659 7395 2.456340 TCCAGGTCCAGGATATCTCCAT 59.544 50.000 0.00 0.00 44.79 3.41
4660 7396 1.866269 TCCAGGTCCAGGATATCTCCA 59.134 52.381 0.00 0.00 44.79 3.86
4661 7397 2.110899 TCTCCAGGTCCAGGATATCTCC 59.889 54.545 2.98 0.00 42.43 3.71
4662 7398 3.534357 TCTCCAGGTCCAGGATATCTC 57.466 52.381 2.98 0.00 33.99 2.75
4663 7399 4.140591 TCAATCTCCAGGTCCAGGATATCT 60.141 45.833 2.98 0.00 33.99 1.98
4664 7400 4.163427 TCAATCTCCAGGTCCAGGATATC 58.837 47.826 2.98 0.00 33.99 1.63
4665 7401 4.140591 TCTCAATCTCCAGGTCCAGGATAT 60.141 45.833 2.98 0.00 33.99 1.63
4666 7402 3.207549 TCTCAATCTCCAGGTCCAGGATA 59.792 47.826 2.98 0.00 33.99 2.59
4667 7403 2.022625 TCTCAATCTCCAGGTCCAGGAT 60.023 50.000 2.98 0.00 33.99 3.24
4668 7404 1.362584 TCTCAATCTCCAGGTCCAGGA 59.637 52.381 2.52 2.52 0.00 3.86
4669 7405 1.871418 TCTCAATCTCCAGGTCCAGG 58.129 55.000 0.00 0.00 0.00 4.45
4670 7406 2.836981 ACTTCTCAATCTCCAGGTCCAG 59.163 50.000 0.00 0.00 0.00 3.86
4671 7407 2.907892 ACTTCTCAATCTCCAGGTCCA 58.092 47.619 0.00 0.00 0.00 4.02
4672 7408 4.027437 AGTACTTCTCAATCTCCAGGTCC 58.973 47.826 0.00 0.00 0.00 4.46
4673 7409 4.679372 GCAGTACTTCTCAATCTCCAGGTC 60.679 50.000 0.00 0.00 0.00 3.85
4674 7410 3.196685 GCAGTACTTCTCAATCTCCAGGT 59.803 47.826 0.00 0.00 0.00 4.00
4675 7411 3.431486 GGCAGTACTTCTCAATCTCCAGG 60.431 52.174 0.00 0.00 0.00 4.45
4676 7412 3.196469 TGGCAGTACTTCTCAATCTCCAG 59.804 47.826 0.00 0.00 0.00 3.86
4677 7413 3.173151 TGGCAGTACTTCTCAATCTCCA 58.827 45.455 0.00 0.00 0.00 3.86
4678 7414 3.895232 TGGCAGTACTTCTCAATCTCC 57.105 47.619 0.00 0.00 0.00 3.71
4679 7415 7.497249 ACATATTTGGCAGTACTTCTCAATCTC 59.503 37.037 0.00 0.00 0.00 2.75
4680 7416 7.281774 CACATATTTGGCAGTACTTCTCAATCT 59.718 37.037 0.00 0.00 0.00 2.40
4681 7417 7.066284 ACACATATTTGGCAGTACTTCTCAATC 59.934 37.037 0.00 0.00 0.00 2.67
4682 7418 6.886459 ACACATATTTGGCAGTACTTCTCAAT 59.114 34.615 0.00 0.00 0.00 2.57
4683 7419 6.237901 ACACATATTTGGCAGTACTTCTCAA 58.762 36.000 0.00 0.00 0.00 3.02
4684 7420 5.804639 ACACATATTTGGCAGTACTTCTCA 58.195 37.500 0.00 0.00 0.00 3.27
4685 7421 7.495934 ACATACACATATTTGGCAGTACTTCTC 59.504 37.037 0.00 0.00 0.00 2.87
4686 7422 7.338710 ACATACACATATTTGGCAGTACTTCT 58.661 34.615 0.00 0.00 0.00 2.85
4687 7423 7.495934 AGACATACACATATTTGGCAGTACTTC 59.504 37.037 0.00 0.00 0.00 3.01
4688 7424 7.338710 AGACATACACATATTTGGCAGTACTT 58.661 34.615 0.00 0.00 0.00 2.24
4689 7425 6.889198 AGACATACACATATTTGGCAGTACT 58.111 36.000 0.00 0.00 0.00 2.73
4690 7426 8.657074 TTAGACATACACATATTTGGCAGTAC 57.343 34.615 0.00 0.00 0.00 2.73
4691 7427 7.931407 CCTTAGACATACACATATTTGGCAGTA 59.069 37.037 0.00 0.00 0.00 2.74
4692 7428 6.767902 CCTTAGACATACACATATTTGGCAGT 59.232 38.462 0.00 0.00 0.00 4.40
4693 7429 6.205464 CCCTTAGACATACACATATTTGGCAG 59.795 42.308 0.00 0.00 0.00 4.85
4694 7430 6.061441 CCCTTAGACATACACATATTTGGCA 58.939 40.000 0.00 0.00 0.00 4.92
4695 7431 5.048713 GCCCTTAGACATACACATATTTGGC 60.049 44.000 0.00 0.00 0.00 4.52
4696 7432 6.061441 TGCCCTTAGACATACACATATTTGG 58.939 40.000 0.00 0.00 0.00 3.28
4697 7433 7.229306 ACATGCCCTTAGACATACACATATTTG 59.771 37.037 0.00 0.00 0.00 2.32
4698 7434 7.290061 ACATGCCCTTAGACATACACATATTT 58.710 34.615 0.00 0.00 0.00 1.40
4699 7435 6.841601 ACATGCCCTTAGACATACACATATT 58.158 36.000 0.00 0.00 0.00 1.28
4700 7436 6.439636 ACATGCCCTTAGACATACACATAT 57.560 37.500 0.00 0.00 0.00 1.78
4701 7437 5.887214 ACATGCCCTTAGACATACACATA 57.113 39.130 0.00 0.00 0.00 2.29
4702 7438 4.778213 ACATGCCCTTAGACATACACAT 57.222 40.909 0.00 0.00 0.00 3.21
4703 7439 5.130311 ACATACATGCCCTTAGACATACACA 59.870 40.000 0.00 0.00 0.00 3.72
4704 7440 5.611374 ACATACATGCCCTTAGACATACAC 58.389 41.667 0.00 0.00 0.00 2.90
4705 7441 5.602561 AGACATACATGCCCTTAGACATACA 59.397 40.000 0.00 0.00 0.00 2.29
4706 7442 6.102897 AGACATACATGCCCTTAGACATAC 57.897 41.667 0.00 0.00 0.00 2.39
4707 7443 7.010771 AGTAGACATACATGCCCTTAGACATA 58.989 38.462 0.00 0.00 34.07 2.29
4708 7444 5.841237 AGTAGACATACATGCCCTTAGACAT 59.159 40.000 0.00 0.00 34.07 3.06
4709 7445 5.208890 AGTAGACATACATGCCCTTAGACA 58.791 41.667 0.00 0.00 34.07 3.41
4710 7446 5.793030 AGTAGACATACATGCCCTTAGAC 57.207 43.478 0.00 0.00 34.07 2.59
4711 7447 5.304614 GGAAGTAGACATACATGCCCTTAGA 59.695 44.000 0.00 0.00 34.07 2.10
4712 7448 5.070446 TGGAAGTAGACATACATGCCCTTAG 59.930 44.000 0.00 0.00 34.07 2.18
4713 7449 4.966168 TGGAAGTAGACATACATGCCCTTA 59.034 41.667 0.00 0.00 34.07 2.69
4714 7450 3.780294 TGGAAGTAGACATACATGCCCTT 59.220 43.478 0.00 0.00 34.07 3.95
4715 7451 3.384168 TGGAAGTAGACATACATGCCCT 58.616 45.455 0.00 0.00 34.07 5.19
4716 7452 3.838244 TGGAAGTAGACATACATGCCC 57.162 47.619 0.00 0.00 34.07 5.36
4717 7453 5.368145 TCATTGGAAGTAGACATACATGCC 58.632 41.667 0.00 0.00 34.07 4.40
4718 7454 6.925610 TTCATTGGAAGTAGACATACATGC 57.074 37.500 0.00 0.00 34.07 4.06
4767 7504 5.844396 GTGACGAATAAAAACTGGACGAAAG 59.156 40.000 0.00 0.00 0.00 2.62
4776 7513 4.070009 GTGGGAGGTGACGAATAAAAACT 58.930 43.478 0.00 0.00 0.00 2.66
4976 7722 8.008279 GGAAGGTTATCGAGAAAAATATTACGC 58.992 37.037 0.00 0.00 0.00 4.42
5021 7768 8.344831 CGCAGGATTAATGATTTGTTATTGAGA 58.655 33.333 0.00 0.00 0.00 3.27
5179 7928 4.147449 TGGCTGCGACATCCTCCG 62.147 66.667 0.00 0.00 0.00 4.63
5236 7985 1.336887 CCTTCCTTGACGTCGTGATGT 60.337 52.381 11.62 0.00 0.00 3.06
5254 8003 2.683465 ATGCCTTCCGTCATGGCCT 61.683 57.895 3.32 0.00 43.53 5.19
5271 8020 0.892755 ACGTGGTGGTATGACGACAT 59.107 50.000 5.56 5.56 40.16 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.