Multiple sequence alignment - TraesCS7D01G426200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G426200 chr7D 100.000 2541 0 0 1 2541 546240318 546242858 0.000000e+00 4693.0
1 TraesCS7D01G426200 chr7D 92.801 639 42 3 1906 2541 381004839 381004202 0.000000e+00 922.0
2 TraesCS7D01G426200 chr6D 92.901 648 39 6 1901 2541 464696082 464696729 0.000000e+00 935.0
3 TraesCS7D01G426200 chr6D 91.988 649 48 4 1896 2541 313020465 313021112 0.000000e+00 907.0
4 TraesCS7D01G426200 chr6D 92.019 639 46 4 1907 2541 101727293 101726656 0.000000e+00 893.0
5 TraesCS7D01G426200 chr6D 91.284 654 52 5 1891 2541 340195613 340196264 0.000000e+00 887.0
6 TraesCS7D01G426200 chr3D 92.558 645 42 5 1901 2541 97120809 97120167 0.000000e+00 920.0
7 TraesCS7D01G426200 chr3D 92.037 653 45 5 1896 2541 109275077 109274425 0.000000e+00 911.0
8 TraesCS7D01G426200 chr2D 91.667 648 49 4 1896 2539 81059579 81060225 0.000000e+00 893.0
9 TraesCS7D01G426200 chr2D 91.324 657 48 8 1890 2541 531683400 531682748 0.000000e+00 889.0
10 TraesCS7D01G426200 chr7B 92.432 621 17 9 1308 1905 590156840 590157453 0.000000e+00 859.0
11 TraesCS7D01G426200 chr7B 93.671 316 5 6 941 1244 590156516 590156828 2.300000e-125 459.0
12 TraesCS7D01G426200 chr7B 95.028 181 7 1 763 943 590156303 590156481 1.490000e-72 283.0
13 TraesCS7D01G426200 chr7B 94.872 78 3 1 679 755 590156119 590156196 1.230000e-23 121.0
14 TraesCS7D01G426200 chr7A 95.161 310 6 4 941 1244 628963880 628964186 4.920000e-132 481.0
15 TraesCS7D01G426200 chr7A 87.696 382 9 3 1308 1657 628964198 628964573 6.540000e-111 411.0
16 TraesCS7D01G426200 chr7A 87.000 300 16 14 664 943 628963549 628963845 1.470000e-82 316.0
17 TraesCS7D01G426200 chr7A 91.860 86 5 2 1713 1796 628970092 628970177 4.440000e-23 119.0
18 TraesCS7D01G426200 chr1D 91.935 62 5 0 1245 1306 463263953 463264014 1.250000e-13 87.9
19 TraesCS7D01G426200 chr5D 97.143 35 1 0 1245 1279 125779127 125779093 2.730000e-05 60.2
20 TraesCS7D01G426200 chr5B 94.595 37 2 0 72 108 17569667 17569703 9.820000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G426200 chr7D 546240318 546242858 2540 False 4693.000000 4693 100.000000 1 2541 1 chr7D.!!$F1 2540
1 TraesCS7D01G426200 chr7D 381004202 381004839 637 True 922.000000 922 92.801000 1906 2541 1 chr7D.!!$R1 635
2 TraesCS7D01G426200 chr6D 464696082 464696729 647 False 935.000000 935 92.901000 1901 2541 1 chr6D.!!$F3 640
3 TraesCS7D01G426200 chr6D 313020465 313021112 647 False 907.000000 907 91.988000 1896 2541 1 chr6D.!!$F1 645
4 TraesCS7D01G426200 chr6D 101726656 101727293 637 True 893.000000 893 92.019000 1907 2541 1 chr6D.!!$R1 634
5 TraesCS7D01G426200 chr6D 340195613 340196264 651 False 887.000000 887 91.284000 1891 2541 1 chr6D.!!$F2 650
6 TraesCS7D01G426200 chr3D 97120167 97120809 642 True 920.000000 920 92.558000 1901 2541 1 chr3D.!!$R1 640
7 TraesCS7D01G426200 chr3D 109274425 109275077 652 True 911.000000 911 92.037000 1896 2541 1 chr3D.!!$R2 645
8 TraesCS7D01G426200 chr2D 81059579 81060225 646 False 893.000000 893 91.667000 1896 2539 1 chr2D.!!$F1 643
9 TraesCS7D01G426200 chr2D 531682748 531683400 652 True 889.000000 889 91.324000 1890 2541 1 chr2D.!!$R1 651
10 TraesCS7D01G426200 chr7B 590156119 590157453 1334 False 430.500000 859 94.000750 679 1905 4 chr7B.!!$F1 1226
11 TraesCS7D01G426200 chr7A 628963549 628964573 1024 False 402.666667 481 89.952333 664 1657 3 chr7A.!!$F2 993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 560 0.031043 ACGAATGAACACACGACCGA 59.969 50.0 0.0 0.0 0.00 4.69 F
639 640 0.034896 TTTGCCTCCTTCCTCGTCAC 59.965 55.0 0.0 0.0 0.00 3.67 F
954 1092 0.036164 CCAACCAATCGTCAGGTCCA 59.964 55.0 0.0 0.0 37.07 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 2257 0.878416 GCATTTTGCCCACACGTAGA 59.122 50.000 0.0 0.0 37.42 2.59 R
2075 2277 1.153881 GAGAGGTCGTGGGCGTTAC 60.154 63.158 0.0 0.0 39.49 2.50 R
2454 2800 1.394917 GCCATGTCTCTTTGTAGTGCG 59.605 52.381 0.0 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.787435 AAGGTGTATGTAAAAAGTAGACATCAA 57.213 29.630 0.00 0.00 35.48 2.57
27 28 9.787435 AGGTGTATGTAAAAAGTAGACATCAAA 57.213 29.630 0.00 0.00 35.48 2.69
71 72 8.779354 TTTAATTGTGTGTATAAAAATGCCCC 57.221 30.769 0.00 0.00 0.00 5.80
72 73 6.619329 AATTGTGTGTATAAAAATGCCCCT 57.381 33.333 0.00 0.00 0.00 4.79
73 74 5.398603 TTGTGTGTATAAAAATGCCCCTG 57.601 39.130 0.00 0.00 0.00 4.45
74 75 4.667573 TGTGTGTATAAAAATGCCCCTGA 58.332 39.130 0.00 0.00 0.00 3.86
75 76 5.268387 TGTGTGTATAAAAATGCCCCTGAT 58.732 37.500 0.00 0.00 0.00 2.90
76 77 5.126869 TGTGTGTATAAAAATGCCCCTGATG 59.873 40.000 0.00 0.00 0.00 3.07
77 78 5.127031 GTGTGTATAAAAATGCCCCTGATGT 59.873 40.000 0.00 0.00 0.00 3.06
78 79 6.320164 GTGTGTATAAAAATGCCCCTGATGTA 59.680 38.462 0.00 0.00 0.00 2.29
79 80 7.014230 GTGTGTATAAAAATGCCCCTGATGTAT 59.986 37.037 0.00 0.00 0.00 2.29
80 81 8.221251 TGTGTATAAAAATGCCCCTGATGTATA 58.779 33.333 0.00 0.00 0.00 1.47
81 82 8.512138 GTGTATAAAAATGCCCCTGATGTATAC 58.488 37.037 0.00 0.00 0.00 1.47
82 83 8.221251 TGTATAAAAATGCCCCTGATGTATACA 58.779 33.333 8.27 8.27 32.37 2.29
83 84 9.073475 GTATAAAAATGCCCCTGATGTATACAA 57.927 33.333 10.14 0.00 0.00 2.41
84 85 6.469782 AAAAATGCCCCTGATGTATACAAG 57.530 37.500 10.14 3.57 0.00 3.16
85 86 5.387113 AAATGCCCCTGATGTATACAAGA 57.613 39.130 10.14 0.00 0.00 3.02
86 87 5.387113 AATGCCCCTGATGTATACAAGAA 57.613 39.130 10.14 0.00 0.00 2.52
87 88 4.853468 TGCCCCTGATGTATACAAGAAA 57.147 40.909 10.14 0.00 0.00 2.52
88 89 5.387113 TGCCCCTGATGTATACAAGAAAT 57.613 39.130 10.14 0.00 0.00 2.17
89 90 6.508030 TGCCCCTGATGTATACAAGAAATA 57.492 37.500 10.14 0.00 0.00 1.40
90 91 7.090319 TGCCCCTGATGTATACAAGAAATAT 57.910 36.000 10.14 0.00 0.00 1.28
91 92 8.213489 TGCCCCTGATGTATACAAGAAATATA 57.787 34.615 10.14 0.00 0.00 0.86
92 93 8.100791 TGCCCCTGATGTATACAAGAAATATAC 58.899 37.037 10.14 0.00 36.46 1.47
93 94 8.100791 GCCCCTGATGTATACAAGAAATATACA 58.899 37.037 10.14 7.18 45.17 2.29
127 128 5.989551 AAAAAGGCATCAAAATGTGTGTC 57.010 34.783 0.00 0.00 35.18 3.67
128 129 4.669206 AAAGGCATCAAAATGTGTGTCA 57.331 36.364 0.00 0.00 35.18 3.58
129 130 3.928727 AGGCATCAAAATGTGTGTCAG 57.071 42.857 0.00 0.00 35.18 3.51
130 131 3.489355 AGGCATCAAAATGTGTGTCAGA 58.511 40.909 0.00 0.00 35.18 3.27
131 132 3.890756 AGGCATCAAAATGTGTGTCAGAA 59.109 39.130 0.00 0.00 35.18 3.02
132 133 4.341806 AGGCATCAAAATGTGTGTCAGAAA 59.658 37.500 0.00 0.00 35.18 2.52
133 134 5.049167 GGCATCAAAATGTGTGTCAGAAAA 58.951 37.500 0.00 0.00 35.18 2.29
134 135 5.523188 GGCATCAAAATGTGTGTCAGAAAAA 59.477 36.000 0.00 0.00 35.18 1.94
211 212 8.801715 GGTCTATACCAAAAATGCATAATGTG 57.198 34.615 0.00 0.00 45.98 3.21
212 213 8.413229 GGTCTATACCAAAAATGCATAATGTGT 58.587 33.333 0.00 0.00 45.98 3.72
219 220 9.499479 ACCAAAAATGCATAATGTGTATGAAAA 57.501 25.926 0.00 0.00 33.12 2.29
234 235 9.755804 TGTGTATGAAAAATAAAACATGCTTCA 57.244 25.926 0.00 0.00 0.00 3.02
311 312 9.607285 GTATACAAAAATGTAGACTTGTGTTGG 57.393 33.333 6.52 0.00 34.67 3.77
312 313 6.767524 ACAAAAATGTAGACTTGTGTTGGA 57.232 33.333 0.00 0.00 31.00 3.53
313 314 7.164230 ACAAAAATGTAGACTTGTGTTGGAA 57.836 32.000 0.00 0.00 31.00 3.53
314 315 7.607250 ACAAAAATGTAGACTTGTGTTGGAAA 58.393 30.769 0.00 0.00 31.00 3.13
315 316 8.091449 ACAAAAATGTAGACTTGTGTTGGAAAA 58.909 29.630 0.00 0.00 31.00 2.29
316 317 8.379902 CAAAAATGTAGACTTGTGTTGGAAAAC 58.620 33.333 0.00 0.00 0.00 2.43
317 318 5.767816 ATGTAGACTTGTGTTGGAAAACC 57.232 39.130 0.00 0.00 0.00 3.27
318 319 4.850680 TGTAGACTTGTGTTGGAAAACCT 58.149 39.130 0.00 0.00 0.00 3.50
319 320 4.879545 TGTAGACTTGTGTTGGAAAACCTC 59.120 41.667 0.00 0.00 0.00 3.85
320 321 3.288092 AGACTTGTGTTGGAAAACCTCC 58.712 45.455 0.00 0.00 45.64 4.30
350 351 9.500785 AAAAAGTGAGAAACAATCAAAAGGAAA 57.499 25.926 0.00 0.00 0.00 3.13
351 352 9.500785 AAAAGTGAGAAACAATCAAAAGGAAAA 57.499 25.926 0.00 0.00 0.00 2.29
352 353 8.479313 AAGTGAGAAACAATCAAAAGGAAAAC 57.521 30.769 0.00 0.00 0.00 2.43
353 354 7.610865 AGTGAGAAACAATCAAAAGGAAAACA 58.389 30.769 0.00 0.00 0.00 2.83
354 355 8.093927 AGTGAGAAACAATCAAAAGGAAAACAA 58.906 29.630 0.00 0.00 0.00 2.83
355 356 8.716909 GTGAGAAACAATCAAAAGGAAAACAAA 58.283 29.630 0.00 0.00 0.00 2.83
356 357 9.277783 TGAGAAACAATCAAAAGGAAAACAAAA 57.722 25.926 0.00 0.00 0.00 2.44
427 428 9.817809 AAGAAAATAGAAAAACAGGAGAAAACC 57.182 29.630 0.00 0.00 0.00 3.27
428 429 8.135529 AGAAAATAGAAAAACAGGAGAAAACCG 58.864 33.333 0.00 0.00 34.73 4.44
429 430 7.576861 AAATAGAAAAACAGGAGAAAACCGA 57.423 32.000 0.00 0.00 34.73 4.69
430 431 6.803154 ATAGAAAAACAGGAGAAAACCGAG 57.197 37.500 0.00 0.00 34.73 4.63
431 432 4.777463 AGAAAAACAGGAGAAAACCGAGA 58.223 39.130 0.00 0.00 34.73 4.04
432 433 5.190677 AGAAAAACAGGAGAAAACCGAGAA 58.809 37.500 0.00 0.00 34.73 2.87
433 434 5.828328 AGAAAAACAGGAGAAAACCGAGAAT 59.172 36.000 0.00 0.00 34.73 2.40
434 435 5.438761 AAAACAGGAGAAAACCGAGAATG 57.561 39.130 0.00 0.00 34.73 2.67
435 436 4.351874 AACAGGAGAAAACCGAGAATGA 57.648 40.909 0.00 0.00 34.73 2.57
436 437 4.351874 ACAGGAGAAAACCGAGAATGAA 57.648 40.909 0.00 0.00 34.73 2.57
437 438 4.714632 ACAGGAGAAAACCGAGAATGAAA 58.285 39.130 0.00 0.00 34.73 2.69
438 439 4.515567 ACAGGAGAAAACCGAGAATGAAAC 59.484 41.667 0.00 0.00 34.73 2.78
439 440 4.515191 CAGGAGAAAACCGAGAATGAAACA 59.485 41.667 0.00 0.00 34.73 2.83
440 441 5.008613 CAGGAGAAAACCGAGAATGAAACAA 59.991 40.000 0.00 0.00 34.73 2.83
441 442 5.239525 AGGAGAAAACCGAGAATGAAACAAG 59.760 40.000 0.00 0.00 34.73 3.16
442 443 5.238650 GGAGAAAACCGAGAATGAAACAAGA 59.761 40.000 0.00 0.00 0.00 3.02
443 444 6.238648 GGAGAAAACCGAGAATGAAACAAGAA 60.239 38.462 0.00 0.00 0.00 2.52
444 445 7.095695 AGAAAACCGAGAATGAAACAAGAAA 57.904 32.000 0.00 0.00 0.00 2.52
445 446 7.196331 AGAAAACCGAGAATGAAACAAGAAAG 58.804 34.615 0.00 0.00 0.00 2.62
446 447 6.693315 AAACCGAGAATGAAACAAGAAAGA 57.307 33.333 0.00 0.00 0.00 2.52
447 448 5.674933 ACCGAGAATGAAACAAGAAAGAC 57.325 39.130 0.00 0.00 0.00 3.01
448 449 5.123227 ACCGAGAATGAAACAAGAAAGACA 58.877 37.500 0.00 0.00 0.00 3.41
449 450 5.588648 ACCGAGAATGAAACAAGAAAGACAA 59.411 36.000 0.00 0.00 0.00 3.18
450 451 6.094881 ACCGAGAATGAAACAAGAAAGACAAA 59.905 34.615 0.00 0.00 0.00 2.83
451 452 6.634436 CCGAGAATGAAACAAGAAAGACAAAG 59.366 38.462 0.00 0.00 0.00 2.77
452 453 7.189512 CGAGAATGAAACAAGAAAGACAAAGT 58.810 34.615 0.00 0.00 0.00 2.66
453 454 7.698130 CGAGAATGAAACAAGAAAGACAAAGTT 59.302 33.333 0.00 0.00 0.00 2.66
454 455 9.358872 GAGAATGAAACAAGAAAGACAAAGTTT 57.641 29.630 0.00 0.00 32.48 2.66
458 459 8.442605 TGAAACAAGAAAGACAAAGTTTAACG 57.557 30.769 0.00 0.00 30.23 3.18
459 460 8.291032 TGAAACAAGAAAGACAAAGTTTAACGA 58.709 29.630 0.00 0.00 30.23 3.85
460 461 9.120422 GAAACAAGAAAGACAAAGTTTAACGAA 57.880 29.630 0.00 0.00 30.23 3.85
461 462 9.634163 AAACAAGAAAGACAAAGTTTAACGAAT 57.366 25.926 0.00 0.00 0.00 3.34
462 463 9.634163 AACAAGAAAGACAAAGTTTAACGAATT 57.366 25.926 0.00 0.00 0.00 2.17
463 464 9.634163 ACAAGAAAGACAAAGTTTAACGAATTT 57.366 25.926 0.00 0.00 0.00 1.82
479 480 9.962783 TTAACGAATTTTAAAAGGAAAATCCGA 57.037 25.926 6.79 0.00 38.39 4.55
480 481 8.874744 AACGAATTTTAAAAGGAAAATCCGAA 57.125 26.923 6.79 0.00 38.39 4.30
481 482 8.515473 ACGAATTTTAAAAGGAAAATCCGAAG 57.485 30.769 6.79 0.00 38.39 3.79
482 483 8.354426 ACGAATTTTAAAAGGAAAATCCGAAGA 58.646 29.630 6.79 0.00 38.39 2.87
483 484 8.850452 CGAATTTTAAAAGGAAAATCCGAAGAG 58.150 33.333 6.79 0.00 38.39 2.85
484 485 9.908152 GAATTTTAAAAGGAAAATCCGAAGAGA 57.092 29.630 6.79 0.00 42.75 3.10
486 487 9.692749 ATTTTAAAAGGAAAATCCGAAGAGAAC 57.307 29.630 6.79 0.00 42.75 3.01
487 488 5.707242 AAAAGGAAAATCCGAAGAGAACC 57.293 39.130 0.00 0.00 42.75 3.62
488 489 4.367039 AAGGAAAATCCGAAGAGAACCA 57.633 40.909 0.00 0.00 42.75 3.67
489 490 3.944087 AGGAAAATCCGAAGAGAACCAG 58.056 45.455 0.00 0.00 42.75 4.00
490 491 3.328050 AGGAAAATCCGAAGAGAACCAGT 59.672 43.478 0.00 0.00 42.75 4.00
491 492 3.437049 GGAAAATCCGAAGAGAACCAGTG 59.563 47.826 0.00 0.00 0.00 3.66
492 493 4.315803 GAAAATCCGAAGAGAACCAGTGA 58.684 43.478 0.00 0.00 0.00 3.41
493 494 4.559862 AAATCCGAAGAGAACCAGTGAT 57.440 40.909 0.00 0.00 0.00 3.06
494 495 3.533606 ATCCGAAGAGAACCAGTGATG 57.466 47.619 0.00 0.00 0.00 3.07
495 496 2.525368 TCCGAAGAGAACCAGTGATGA 58.475 47.619 0.00 0.00 0.00 2.92
496 497 2.897326 TCCGAAGAGAACCAGTGATGAA 59.103 45.455 0.00 0.00 0.00 2.57
497 498 3.056536 TCCGAAGAGAACCAGTGATGAAG 60.057 47.826 0.00 0.00 0.00 3.02
498 499 3.306364 CCGAAGAGAACCAGTGATGAAGT 60.306 47.826 0.00 0.00 0.00 3.01
499 500 4.082190 CCGAAGAGAACCAGTGATGAAGTA 60.082 45.833 0.00 0.00 0.00 2.24
500 501 5.470368 CGAAGAGAACCAGTGATGAAGTAA 58.530 41.667 0.00 0.00 0.00 2.24
501 502 6.102663 CGAAGAGAACCAGTGATGAAGTAAT 58.897 40.000 0.00 0.00 0.00 1.89
502 503 7.258441 CGAAGAGAACCAGTGATGAAGTAATA 58.742 38.462 0.00 0.00 0.00 0.98
503 504 7.759886 CGAAGAGAACCAGTGATGAAGTAATAA 59.240 37.037 0.00 0.00 0.00 1.40
504 505 9.436957 GAAGAGAACCAGTGATGAAGTAATAAA 57.563 33.333 0.00 0.00 0.00 1.40
505 506 9.793259 AAGAGAACCAGTGATGAAGTAATAAAA 57.207 29.630 0.00 0.00 0.00 1.52
506 507 9.793259 AGAGAACCAGTGATGAAGTAATAAAAA 57.207 29.630 0.00 0.00 0.00 1.94
527 528 4.901866 AAAAACGAAACAAACACAGCAG 57.098 36.364 0.00 0.00 0.00 4.24
528 529 1.908065 AACGAAACAAACACAGCAGC 58.092 45.000 0.00 0.00 0.00 5.25
529 530 1.094785 ACGAAACAAACACAGCAGCT 58.905 45.000 0.00 0.00 0.00 4.24
530 531 2.285083 ACGAAACAAACACAGCAGCTA 58.715 42.857 0.00 0.00 0.00 3.32
531 532 2.680841 ACGAAACAAACACAGCAGCTAA 59.319 40.909 0.00 0.00 0.00 3.09
532 533 3.035942 CGAAACAAACACAGCAGCTAAC 58.964 45.455 0.00 0.00 0.00 2.34
533 534 3.486708 CGAAACAAACACAGCAGCTAACA 60.487 43.478 0.00 0.00 0.00 2.41
534 535 3.698029 AACAAACACAGCAGCTAACAG 57.302 42.857 0.00 0.00 0.00 3.16
535 536 2.917933 ACAAACACAGCAGCTAACAGA 58.082 42.857 0.00 0.00 0.00 3.41
536 537 2.614057 ACAAACACAGCAGCTAACAGAC 59.386 45.455 0.00 0.00 0.00 3.51
537 538 1.884235 AACACAGCAGCTAACAGACC 58.116 50.000 0.00 0.00 0.00 3.85
538 539 0.319900 ACACAGCAGCTAACAGACCG 60.320 55.000 0.00 0.00 0.00 4.79
539 540 0.038251 CACAGCAGCTAACAGACCGA 60.038 55.000 0.00 0.00 0.00 4.69
540 541 0.679505 ACAGCAGCTAACAGACCGAA 59.320 50.000 0.00 0.00 0.00 4.30
541 542 1.071605 CAGCAGCTAACAGACCGAAC 58.928 55.000 0.00 0.00 0.00 3.95
542 543 0.388649 AGCAGCTAACAGACCGAACG 60.389 55.000 0.00 0.00 0.00 3.95
543 544 0.388134 GCAGCTAACAGACCGAACGA 60.388 55.000 0.00 0.00 0.00 3.85
544 545 1.933500 GCAGCTAACAGACCGAACGAA 60.934 52.381 0.00 0.00 0.00 3.85
545 546 2.607187 CAGCTAACAGACCGAACGAAT 58.393 47.619 0.00 0.00 0.00 3.34
546 547 2.345641 CAGCTAACAGACCGAACGAATG 59.654 50.000 0.00 0.00 0.00 2.67
547 548 2.230508 AGCTAACAGACCGAACGAATGA 59.769 45.455 0.00 0.00 0.00 2.57
548 549 2.991190 GCTAACAGACCGAACGAATGAA 59.009 45.455 0.00 0.00 0.00 2.57
549 550 3.181533 GCTAACAGACCGAACGAATGAAC 60.182 47.826 0.00 0.00 0.00 3.18
550 551 2.519377 ACAGACCGAACGAATGAACA 57.481 45.000 0.00 0.00 0.00 3.18
551 552 2.132762 ACAGACCGAACGAATGAACAC 58.867 47.619 0.00 0.00 0.00 3.32
552 553 2.131972 CAGACCGAACGAATGAACACA 58.868 47.619 0.00 0.00 0.00 3.72
553 554 2.096909 CAGACCGAACGAATGAACACAC 60.097 50.000 0.00 0.00 0.00 3.82
554 555 0.856641 ACCGAACGAATGAACACACG 59.143 50.000 0.00 0.00 0.00 4.49
555 556 1.133407 CCGAACGAATGAACACACGA 58.867 50.000 0.00 0.00 0.00 4.35
556 557 1.136721 CCGAACGAATGAACACACGAC 60.137 52.381 0.00 0.00 0.00 4.34
557 558 1.136721 CGAACGAATGAACACACGACC 60.137 52.381 0.00 0.00 0.00 4.79
558 559 0.856641 AACGAATGAACACACGACCG 59.143 50.000 0.00 0.00 0.00 4.79
559 560 0.031043 ACGAATGAACACACGACCGA 59.969 50.000 0.00 0.00 0.00 4.69
560 561 0.708370 CGAATGAACACACGACCGAG 59.292 55.000 0.00 0.00 0.00 4.63
561 562 1.664874 CGAATGAACACACGACCGAGA 60.665 52.381 0.00 0.00 0.00 4.04
562 563 2.400399 GAATGAACACACGACCGAGAA 58.600 47.619 0.00 0.00 0.00 2.87
563 564 2.519377 ATGAACACACGACCGAGAAA 57.481 45.000 0.00 0.00 0.00 2.52
564 565 1.563111 TGAACACACGACCGAGAAAC 58.437 50.000 0.00 0.00 0.00 2.78
565 566 1.135053 TGAACACACGACCGAGAAACA 60.135 47.619 0.00 0.00 0.00 2.83
566 567 1.257155 GAACACACGACCGAGAAACAC 59.743 52.381 0.00 0.00 0.00 3.32
567 568 0.529119 ACACACGACCGAGAAACACC 60.529 55.000 0.00 0.00 0.00 4.16
568 569 1.068585 ACACGACCGAGAAACACCC 59.931 57.895 0.00 0.00 0.00 4.61
569 570 1.366366 CACGACCGAGAAACACCCT 59.634 57.895 0.00 0.00 0.00 4.34
570 571 0.599558 CACGACCGAGAAACACCCTA 59.400 55.000 0.00 0.00 0.00 3.53
571 572 0.600057 ACGACCGAGAAACACCCTAC 59.400 55.000 0.00 0.00 0.00 3.18
572 573 0.886563 CGACCGAGAAACACCCTACT 59.113 55.000 0.00 0.00 0.00 2.57
573 574 2.086869 CGACCGAGAAACACCCTACTA 58.913 52.381 0.00 0.00 0.00 1.82
574 575 2.097142 CGACCGAGAAACACCCTACTAG 59.903 54.545 0.00 0.00 0.00 2.57
575 576 3.350833 GACCGAGAAACACCCTACTAGA 58.649 50.000 0.00 0.00 0.00 2.43
576 577 3.087781 ACCGAGAAACACCCTACTAGAC 58.912 50.000 0.00 0.00 0.00 2.59
577 578 2.426381 CCGAGAAACACCCTACTAGACC 59.574 54.545 0.00 0.00 0.00 3.85
578 579 2.097142 CGAGAAACACCCTACTAGACCG 59.903 54.545 0.00 0.00 0.00 4.79
579 580 1.823610 AGAAACACCCTACTAGACCGC 59.176 52.381 0.00 0.00 0.00 5.68
580 581 1.823610 GAAACACCCTACTAGACCGCT 59.176 52.381 0.00 0.00 0.00 5.52
581 582 1.934410 AACACCCTACTAGACCGCTT 58.066 50.000 0.00 0.00 0.00 4.68
582 583 1.472188 ACACCCTACTAGACCGCTTC 58.528 55.000 0.00 0.00 0.00 3.86
583 584 1.272313 ACACCCTACTAGACCGCTTCA 60.272 52.381 0.00 0.00 0.00 3.02
584 585 1.405821 CACCCTACTAGACCGCTTCAG 59.594 57.143 0.00 0.00 0.00 3.02
585 586 1.033574 CCCTACTAGACCGCTTCAGG 58.966 60.000 0.00 0.00 37.30 3.86
586 587 0.386113 CCTACTAGACCGCTTCAGGC 59.614 60.000 0.00 0.00 37.64 4.85
595 596 4.698056 GCTTCAGGCGCAATAAGC 57.302 55.556 19.48 19.48 37.75 3.09
609 610 4.116238 GCAATAAGCGAGATATAGCTCCC 58.884 47.826 12.27 3.43 43.78 4.30
610 611 4.355437 CAATAAGCGAGATATAGCTCCCG 58.645 47.826 12.27 3.69 43.78 5.14
611 612 0.528470 AAGCGAGATATAGCTCCCGC 59.472 55.000 14.22 14.22 43.78 6.13
612 613 1.226435 GCGAGATATAGCTCCCGCG 60.226 63.158 12.27 0.00 42.32 6.46
613 614 1.645704 GCGAGATATAGCTCCCGCGA 61.646 60.000 8.23 0.00 42.32 5.87
614 615 1.018148 CGAGATATAGCTCCCGCGAT 58.982 55.000 8.23 0.00 42.32 4.58
615 616 1.402259 CGAGATATAGCTCCCGCGATT 59.598 52.381 8.23 0.00 42.32 3.34
616 617 2.792890 CGAGATATAGCTCCCGCGATTG 60.793 54.545 8.23 0.00 42.32 2.67
617 618 2.423892 GAGATATAGCTCCCGCGATTGA 59.576 50.000 8.23 0.00 42.32 2.57
618 619 3.027412 AGATATAGCTCCCGCGATTGAT 58.973 45.455 8.23 0.00 42.32 2.57
619 620 2.941453 TATAGCTCCCGCGATTGATC 57.059 50.000 8.23 0.00 42.32 2.92
620 621 1.261480 ATAGCTCCCGCGATTGATCT 58.739 50.000 8.23 4.75 42.32 2.75
621 622 1.040646 TAGCTCCCGCGATTGATCTT 58.959 50.000 8.23 0.00 42.32 2.40
622 623 0.179000 AGCTCCCGCGATTGATCTTT 59.821 50.000 8.23 0.00 42.32 2.52
623 624 0.305922 GCTCCCGCGATTGATCTTTG 59.694 55.000 8.23 0.00 0.00 2.77
624 625 0.305922 CTCCCGCGATTGATCTTTGC 59.694 55.000 8.23 0.00 0.00 3.68
625 626 1.095228 TCCCGCGATTGATCTTTGCC 61.095 55.000 8.23 0.00 0.00 4.52
626 627 1.097547 CCCGCGATTGATCTTTGCCT 61.098 55.000 8.23 0.00 0.00 4.75
627 628 0.305922 CCGCGATTGATCTTTGCCTC 59.694 55.000 8.23 0.00 0.00 4.70
628 629 0.305922 CGCGATTGATCTTTGCCTCC 59.694 55.000 0.00 0.00 0.00 4.30
629 630 1.673168 GCGATTGATCTTTGCCTCCT 58.327 50.000 0.00 0.00 0.00 3.69
630 631 2.019984 GCGATTGATCTTTGCCTCCTT 58.980 47.619 0.00 0.00 0.00 3.36
631 632 2.032675 GCGATTGATCTTTGCCTCCTTC 59.967 50.000 0.00 0.00 0.00 3.46
632 633 2.615912 CGATTGATCTTTGCCTCCTTCC 59.384 50.000 0.00 0.00 0.00 3.46
633 634 3.683847 CGATTGATCTTTGCCTCCTTCCT 60.684 47.826 0.00 0.00 0.00 3.36
634 635 3.356529 TTGATCTTTGCCTCCTTCCTC 57.643 47.619 0.00 0.00 0.00 3.71
635 636 1.208052 TGATCTTTGCCTCCTTCCTCG 59.792 52.381 0.00 0.00 0.00 4.63
636 637 1.208293 GATCTTTGCCTCCTTCCTCGT 59.792 52.381 0.00 0.00 0.00 4.18
637 638 0.608640 TCTTTGCCTCCTTCCTCGTC 59.391 55.000 0.00 0.00 0.00 4.20
638 639 0.321671 CTTTGCCTCCTTCCTCGTCA 59.678 55.000 0.00 0.00 0.00 4.35
639 640 0.034896 TTTGCCTCCTTCCTCGTCAC 59.965 55.000 0.00 0.00 0.00 3.67
640 641 1.118965 TTGCCTCCTTCCTCGTCACA 61.119 55.000 0.00 0.00 0.00 3.58
641 642 1.079750 GCCTCCTTCCTCGTCACAC 60.080 63.158 0.00 0.00 0.00 3.82
642 643 1.816863 GCCTCCTTCCTCGTCACACA 61.817 60.000 0.00 0.00 0.00 3.72
643 644 0.038159 CCTCCTTCCTCGTCACACAC 60.038 60.000 0.00 0.00 0.00 3.82
644 645 0.673985 CTCCTTCCTCGTCACACACA 59.326 55.000 0.00 0.00 0.00 3.72
645 646 1.273606 CTCCTTCCTCGTCACACACAT 59.726 52.381 0.00 0.00 0.00 3.21
646 647 1.691976 TCCTTCCTCGTCACACACATT 59.308 47.619 0.00 0.00 0.00 2.71
647 648 1.800586 CCTTCCTCGTCACACACATTG 59.199 52.381 0.00 0.00 0.00 2.82
648 649 2.483876 CTTCCTCGTCACACACATTGT 58.516 47.619 0.00 0.00 39.97 2.71
649 650 2.148916 TCCTCGTCACACACATTGTC 57.851 50.000 0.00 0.00 35.67 3.18
650 651 0.784178 CCTCGTCACACACATTGTCG 59.216 55.000 0.00 0.00 35.67 4.35
651 652 1.601914 CCTCGTCACACACATTGTCGA 60.602 52.381 0.00 0.00 35.67 4.20
652 653 2.124122 CTCGTCACACACATTGTCGAA 58.876 47.619 0.00 0.00 34.91 3.71
653 654 2.538037 CTCGTCACACACATTGTCGAAA 59.462 45.455 0.00 0.00 34.91 3.46
654 655 3.127589 TCGTCACACACATTGTCGAAAT 58.872 40.909 0.00 0.00 35.67 2.17
655 656 3.059935 TCGTCACACACATTGTCGAAATG 60.060 43.478 14.68 14.68 35.67 2.32
656 657 3.554524 GTCACACACATTGTCGAAATGG 58.445 45.455 18.26 12.30 35.67 3.16
657 658 2.551887 TCACACACATTGTCGAAATGGG 59.448 45.455 16.19 16.19 35.67 4.00
658 659 1.269448 ACACACATTGTCGAAATGGGC 59.731 47.619 17.15 0.00 34.50 5.36
659 660 0.887933 ACACATTGTCGAAATGGGCC 59.112 50.000 17.15 0.00 34.50 5.80
660 661 1.176527 CACATTGTCGAAATGGGCCT 58.823 50.000 18.26 0.00 32.14 5.19
661 662 1.133025 CACATTGTCGAAATGGGCCTC 59.867 52.381 18.26 0.00 32.14 4.70
662 663 0.740737 CATTGTCGAAATGGGCCTCC 59.259 55.000 4.53 0.00 0.00 4.30
669 670 2.076863 CGAAATGGGCCTCCGATATTC 58.923 52.381 4.53 0.00 35.24 1.75
677 678 1.677217 GCCTCCGATATTCTGGGATGC 60.677 57.143 0.00 0.00 36.52 3.91
712 713 1.376037 GGCGTGGAGACCTTGAAGG 60.376 63.158 10.24 10.24 42.49 3.46
790 891 2.920227 GCTATCACGCGAGAATCCAGAG 60.920 54.545 15.93 4.00 0.00 3.35
872 973 2.357034 GACACAAAGCGGCCGAGA 60.357 61.111 33.48 0.00 0.00 4.04
873 974 2.357517 ACACAAAGCGGCCGAGAG 60.358 61.111 33.48 17.50 0.00 3.20
954 1092 0.036164 CCAACCAATCGTCAGGTCCA 59.964 55.000 0.00 0.00 37.07 4.02
979 1120 2.075338 GTCTCTCACGGTCTAGTTCGT 58.925 52.381 7.17 7.17 40.49 3.85
980 1121 3.257393 GTCTCTCACGGTCTAGTTCGTA 58.743 50.000 11.39 0.00 37.88 3.43
981 1122 3.061965 GTCTCTCACGGTCTAGTTCGTAC 59.938 52.174 11.39 4.56 37.88 3.67
1110 1263 2.087009 GTTCCAGGCGTTCGACTCG 61.087 63.158 0.00 5.04 0.00 4.18
1115 1268 2.504244 GGCGTTCGACTCGGACAG 60.504 66.667 10.50 4.37 34.65 3.51
1248 1401 2.184322 CGGCTCTGCGTGGTACAT 59.816 61.111 0.00 0.00 44.52 2.29
1251 1404 0.447801 GGCTCTGCGTGGTACATTTG 59.552 55.000 0.00 0.00 44.52 2.32
1252 1405 1.156736 GCTCTGCGTGGTACATTTGT 58.843 50.000 0.00 0.00 44.52 2.83
1253 1406 1.128692 GCTCTGCGTGGTACATTTGTC 59.871 52.381 0.00 0.00 44.52 3.18
1254 1407 2.412870 CTCTGCGTGGTACATTTGTCA 58.587 47.619 0.00 0.00 44.52 3.58
1255 1408 3.002791 CTCTGCGTGGTACATTTGTCAT 58.997 45.455 0.00 0.00 44.52 3.06
1256 1409 2.741517 TCTGCGTGGTACATTTGTCATG 59.258 45.455 0.00 0.00 44.52 3.07
1257 1410 1.809547 TGCGTGGTACATTTGTCATGG 59.190 47.619 0.00 0.00 44.52 3.66
1258 1411 1.810151 GCGTGGTACATTTGTCATGGT 59.190 47.619 0.00 0.00 44.52 3.55
1259 1412 2.227865 GCGTGGTACATTTGTCATGGTT 59.772 45.455 0.00 0.00 44.52 3.67
1260 1413 3.820689 CGTGGTACATTTGTCATGGTTG 58.179 45.455 0.00 0.00 44.52 3.77
1261 1414 3.574614 GTGGTACATTTGTCATGGTTGC 58.425 45.455 0.00 0.00 44.52 4.17
1262 1415 3.255642 GTGGTACATTTGTCATGGTTGCT 59.744 43.478 0.00 0.00 44.52 3.91
1263 1416 3.505680 TGGTACATTTGTCATGGTTGCTC 59.494 43.478 0.00 0.00 0.00 4.26
1264 1417 3.505680 GGTACATTTGTCATGGTTGCTCA 59.494 43.478 0.00 0.00 0.00 4.26
1265 1418 4.022416 GGTACATTTGTCATGGTTGCTCAA 60.022 41.667 0.00 0.00 0.00 3.02
1266 1419 3.981211 ACATTTGTCATGGTTGCTCAAC 58.019 40.909 4.26 4.26 40.45 3.18
1267 1420 3.638160 ACATTTGTCATGGTTGCTCAACT 59.362 39.130 11.91 0.00 40.94 3.16
1268 1421 3.713858 TTTGTCATGGTTGCTCAACTG 57.286 42.857 11.91 4.59 40.94 3.16
1269 1422 0.953727 TGTCATGGTTGCTCAACTGC 59.046 50.000 11.91 0.00 40.94 4.40
1270 1423 0.953727 GTCATGGTTGCTCAACTGCA 59.046 50.000 11.91 3.93 40.94 4.41
1271 1424 1.542915 GTCATGGTTGCTCAACTGCAT 59.457 47.619 11.91 5.87 42.96 3.96
1272 1425 2.029649 GTCATGGTTGCTCAACTGCATT 60.030 45.455 11.91 0.00 42.96 3.56
1273 1426 2.629137 TCATGGTTGCTCAACTGCATTT 59.371 40.909 11.91 0.00 42.96 2.32
1274 1427 2.512485 TGGTTGCTCAACTGCATTTG 57.488 45.000 10.37 10.37 42.96 2.32
1275 1428 1.142474 GGTTGCTCAACTGCATTTGC 58.858 50.000 11.69 2.32 42.96 3.68
1276 1429 1.142474 GTTGCTCAACTGCATTTGCC 58.858 50.000 11.69 6.20 42.96 4.52
1277 1430 0.751452 TTGCTCAACTGCATTTGCCA 59.249 45.000 11.69 8.50 42.96 4.92
1278 1431 0.970640 TGCTCAACTGCATTTGCCAT 59.029 45.000 11.69 0.00 41.18 4.40
1279 1432 1.067425 TGCTCAACTGCATTTGCCATC 60.067 47.619 11.69 2.21 41.18 3.51
1280 1433 1.203994 GCTCAACTGCATTTGCCATCT 59.796 47.619 11.69 0.00 41.18 2.90
1281 1434 2.734492 GCTCAACTGCATTTGCCATCTC 60.734 50.000 11.69 0.00 41.18 2.75
1282 1435 1.469703 TCAACTGCATTTGCCATCTCG 59.530 47.619 11.69 0.00 41.18 4.04
1283 1436 0.813184 AACTGCATTTGCCATCTCGG 59.187 50.000 0.00 0.00 41.18 4.63
1284 1437 1.033746 ACTGCATTTGCCATCTCGGG 61.034 55.000 0.00 0.00 41.18 5.14
1285 1438 1.001020 TGCATTTGCCATCTCGGGT 60.001 52.632 0.00 0.00 41.18 5.28
1286 1439 1.031571 TGCATTTGCCATCTCGGGTC 61.032 55.000 0.00 0.00 41.18 4.46
1287 1440 1.031571 GCATTTGCCATCTCGGGTCA 61.032 55.000 0.00 0.00 34.06 4.02
1288 1441 1.462616 CATTTGCCATCTCGGGTCAA 58.537 50.000 0.00 0.00 34.06 3.18
1289 1442 1.402968 CATTTGCCATCTCGGGTCAAG 59.597 52.381 0.00 0.00 34.06 3.02
1290 1443 0.400213 TTTGCCATCTCGGGTCAAGT 59.600 50.000 0.00 0.00 34.06 3.16
1291 1444 0.321564 TTGCCATCTCGGGTCAAGTG 60.322 55.000 0.00 0.00 34.06 3.16
1292 1445 1.296715 GCCATCTCGGGTCAAGTGT 59.703 57.895 0.00 0.00 34.06 3.55
1293 1446 0.741221 GCCATCTCGGGTCAAGTGTC 60.741 60.000 0.00 0.00 34.06 3.67
1294 1447 0.608130 CCATCTCGGGTCAAGTGTCA 59.392 55.000 0.00 0.00 0.00 3.58
1295 1448 1.404717 CCATCTCGGGTCAAGTGTCAG 60.405 57.143 0.00 0.00 0.00 3.51
1296 1449 1.546029 CATCTCGGGTCAAGTGTCAGA 59.454 52.381 0.00 0.00 0.00 3.27
1297 1450 1.924731 TCTCGGGTCAAGTGTCAGAT 58.075 50.000 0.00 0.00 0.00 2.90
1298 1451 1.546029 TCTCGGGTCAAGTGTCAGATG 59.454 52.381 0.00 0.00 0.00 2.90
1299 1452 0.037326 TCGGGTCAAGTGTCAGATGC 60.037 55.000 0.00 0.00 0.00 3.91
1300 1453 1.021390 CGGGTCAAGTGTCAGATGCC 61.021 60.000 0.00 0.00 0.00 4.40
1301 1454 0.036732 GGGTCAAGTGTCAGATGCCA 59.963 55.000 0.00 0.00 0.00 4.92
1302 1455 1.340405 GGGTCAAGTGTCAGATGCCAT 60.340 52.381 0.00 0.00 0.00 4.40
1303 1456 2.440409 GGTCAAGTGTCAGATGCCATT 58.560 47.619 0.00 0.00 0.00 3.16
1304 1457 2.821969 GGTCAAGTGTCAGATGCCATTT 59.178 45.455 0.00 0.00 0.00 2.32
1305 1458 3.256631 GGTCAAGTGTCAGATGCCATTTT 59.743 43.478 0.00 0.00 0.00 1.82
1306 1459 4.458989 GGTCAAGTGTCAGATGCCATTTTA 59.541 41.667 0.00 0.00 0.00 1.52
1473 1644 0.598419 GAGATCATCGCGTGCATGGA 60.598 55.000 5.77 3.82 0.00 3.41
1474 1645 0.877649 AGATCATCGCGTGCATGGAC 60.878 55.000 7.39 7.39 0.00 4.02
1475 1646 2.150809 GATCATCGCGTGCATGGACG 62.151 60.000 32.22 32.22 42.42 4.79
1476 1647 3.928769 CATCGCGTGCATGGACGG 61.929 66.667 35.56 26.06 39.81 4.79
1560 1738 1.069364 GGCTCGAGCTACATACGTACC 60.069 57.143 34.46 11.47 41.70 3.34
1682 1874 5.412594 TGGATACATGCAAGTTTGTCTTCTC 59.587 40.000 0.00 0.00 46.17 2.87
1686 1878 8.798859 ATACATGCAAGTTTGTCTTCTCTAAT 57.201 30.769 0.00 0.00 33.63 1.73
1763 1956 8.186821 TCGATTTGAGGCTTTACTAGTTACTAC 58.813 37.037 0.00 0.00 0.00 2.73
1885 2078 9.638176 ACTAAATATCAAATTGAGAGGCAAGAT 57.362 29.630 1.10 0.00 40.42 2.40
1920 2114 9.837525 GAATAATAATAGGACGACGATAACTGT 57.162 33.333 0.00 0.00 0.00 3.55
1924 2118 1.129998 AGGACGACGATAACTGTCACG 59.870 52.381 0.00 0.00 36.11 4.35
1941 2135 2.357760 GCGTGTGGGCGTTAAGGA 60.358 61.111 0.00 0.00 0.00 3.36
1944 2140 0.601841 CGTGTGGGCGTTAAGGAGTT 60.602 55.000 0.00 0.00 0.00 3.01
2055 2257 0.538057 TTACGGTCCCTCTCACACGT 60.538 55.000 0.00 0.00 38.23 4.49
2075 2277 0.454285 CTACGTGTGGGCAAAATGCG 60.454 55.000 0.00 0.00 46.21 4.73
2251 2457 2.548178 AACTGCAGTTGCCATCTCG 58.452 52.632 30.66 0.00 41.18 4.04
2349 2695 6.478512 TTTGAAAACTTTAGAGGTTGCCAT 57.521 33.333 0.00 0.00 31.78 4.40
2357 2703 7.439108 ACTTTAGAGGTTGCCATCTACTAAT 57.561 36.000 0.00 0.00 0.00 1.73
2418 2764 6.267471 AGTTGCCATGATTTGAAAACCTTAGA 59.733 34.615 0.00 0.00 0.00 2.10
2427 2773 6.478512 TTTGAAAACCTTAGAAGTTGCCAT 57.521 33.333 0.00 0.00 0.00 4.40
2428 2774 7.589958 TTTGAAAACCTTAGAAGTTGCCATA 57.410 32.000 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.220767 GGGGCATTTTTATACACACAATTAAAA 57.779 29.630 0.00 0.00 0.00 1.52
46 47 8.598041 AGGGGCATTTTTATACACACAATTAAA 58.402 29.630 0.00 0.00 0.00 1.52
47 48 8.037758 CAGGGGCATTTTTATACACACAATTAA 58.962 33.333 0.00 0.00 0.00 1.40
48 49 7.397476 TCAGGGGCATTTTTATACACACAATTA 59.603 33.333 0.00 0.00 0.00 1.40
49 50 6.212388 TCAGGGGCATTTTTATACACACAATT 59.788 34.615 0.00 0.00 0.00 2.32
50 51 5.719085 TCAGGGGCATTTTTATACACACAAT 59.281 36.000 0.00 0.00 0.00 2.71
51 52 5.080337 TCAGGGGCATTTTTATACACACAA 58.920 37.500 0.00 0.00 0.00 3.33
52 53 4.667573 TCAGGGGCATTTTTATACACACA 58.332 39.130 0.00 0.00 0.00 3.72
53 54 5.127031 ACATCAGGGGCATTTTTATACACAC 59.873 40.000 0.00 0.00 0.00 3.82
54 55 5.268387 ACATCAGGGGCATTTTTATACACA 58.732 37.500 0.00 0.00 0.00 3.72
55 56 5.852282 ACATCAGGGGCATTTTTATACAC 57.148 39.130 0.00 0.00 0.00 2.90
56 57 8.221251 TGTATACATCAGGGGCATTTTTATACA 58.779 33.333 0.08 0.00 30.94 2.29
57 58 8.630054 TGTATACATCAGGGGCATTTTTATAC 57.370 34.615 0.08 0.00 0.00 1.47
58 59 9.295825 CTTGTATACATCAGGGGCATTTTTATA 57.704 33.333 6.36 0.00 0.00 0.98
59 60 8.004215 TCTTGTATACATCAGGGGCATTTTTAT 58.996 33.333 6.36 0.00 0.00 1.40
60 61 7.350382 TCTTGTATACATCAGGGGCATTTTTA 58.650 34.615 6.36 0.00 0.00 1.52
61 62 6.194235 TCTTGTATACATCAGGGGCATTTTT 58.806 36.000 6.36 0.00 0.00 1.94
62 63 5.765510 TCTTGTATACATCAGGGGCATTTT 58.234 37.500 6.36 0.00 0.00 1.82
63 64 5.387113 TCTTGTATACATCAGGGGCATTT 57.613 39.130 6.36 0.00 0.00 2.32
64 65 5.387113 TTCTTGTATACATCAGGGGCATT 57.613 39.130 6.36 0.00 0.00 3.56
65 66 5.387113 TTTCTTGTATACATCAGGGGCAT 57.613 39.130 6.36 0.00 0.00 4.40
66 67 4.853468 TTTCTTGTATACATCAGGGGCA 57.147 40.909 6.36 0.00 0.00 5.36
67 68 8.100791 TGTATATTTCTTGTATACATCAGGGGC 58.899 37.037 6.36 0.00 39.08 5.80
105 106 5.426504 TGACACACATTTTGATGCCTTTTT 58.573 33.333 0.00 0.00 0.00 1.94
106 107 5.021033 TGACACACATTTTGATGCCTTTT 57.979 34.783 0.00 0.00 0.00 2.27
107 108 4.341806 TCTGACACACATTTTGATGCCTTT 59.658 37.500 0.00 0.00 0.00 3.11
108 109 3.890756 TCTGACACACATTTTGATGCCTT 59.109 39.130 0.00 0.00 0.00 4.35
109 110 3.489355 TCTGACACACATTTTGATGCCT 58.511 40.909 0.00 0.00 0.00 4.75
110 111 3.921119 TCTGACACACATTTTGATGCC 57.079 42.857 0.00 0.00 0.00 4.40
111 112 6.586868 TTTTTCTGACACACATTTTGATGC 57.413 33.333 0.00 0.00 0.00 3.91
193 194 9.499479 TTTTCATACACATTATGCATTTTTGGT 57.501 25.926 3.54 1.23 0.00 3.67
208 209 9.755804 TGAAGCATGTTTTATTTTTCATACACA 57.244 25.926 0.00 0.00 0.00 3.72
285 286 9.607285 CCAACACAAGTCTACATTTTTGTATAC 57.393 33.333 0.00 0.00 32.86 1.47
286 287 9.562408 TCCAACACAAGTCTACATTTTTGTATA 57.438 29.630 0.00 0.00 32.86 1.47
287 288 8.458573 TCCAACACAAGTCTACATTTTTGTAT 57.541 30.769 0.00 0.00 32.86 2.29
288 289 7.867305 TCCAACACAAGTCTACATTTTTGTA 57.133 32.000 0.00 0.00 32.86 2.41
289 290 6.767524 TCCAACACAAGTCTACATTTTTGT 57.232 33.333 0.00 0.00 34.31 2.83
290 291 8.379902 GTTTTCCAACACAAGTCTACATTTTTG 58.620 33.333 0.00 0.00 32.54 2.44
291 292 7.547722 GGTTTTCCAACACAAGTCTACATTTTT 59.452 33.333 0.00 0.00 40.31 1.94
292 293 7.039270 GGTTTTCCAACACAAGTCTACATTTT 58.961 34.615 0.00 0.00 40.31 1.82
293 294 6.379988 AGGTTTTCCAACACAAGTCTACATTT 59.620 34.615 0.00 0.00 43.73 2.32
294 295 5.891551 AGGTTTTCCAACACAAGTCTACATT 59.108 36.000 0.00 0.00 43.73 2.71
295 296 5.445964 AGGTTTTCCAACACAAGTCTACAT 58.554 37.500 0.00 0.00 43.73 2.29
296 297 4.850680 AGGTTTTCCAACACAAGTCTACA 58.149 39.130 0.00 0.00 43.73 2.74
297 298 4.275196 GGAGGTTTTCCAACACAAGTCTAC 59.725 45.833 0.00 0.00 46.01 2.59
298 299 4.457466 GGAGGTTTTCCAACACAAGTCTA 58.543 43.478 0.00 0.00 46.01 2.59
299 300 3.288092 GGAGGTTTTCCAACACAAGTCT 58.712 45.455 0.00 0.00 46.01 3.24
300 301 3.710326 GGAGGTTTTCCAACACAAGTC 57.290 47.619 0.00 0.00 46.01 3.01
324 325 9.500785 TTTCCTTTTGATTGTTTCTCACTTTTT 57.499 25.926 0.00 0.00 0.00 1.94
325 326 9.500785 TTTTCCTTTTGATTGTTTCTCACTTTT 57.499 25.926 0.00 0.00 0.00 2.27
326 327 8.935844 GTTTTCCTTTTGATTGTTTCTCACTTT 58.064 29.630 0.00 0.00 0.00 2.66
327 328 8.093927 TGTTTTCCTTTTGATTGTTTCTCACTT 58.906 29.630 0.00 0.00 0.00 3.16
328 329 7.610865 TGTTTTCCTTTTGATTGTTTCTCACT 58.389 30.769 0.00 0.00 0.00 3.41
329 330 7.826260 TGTTTTCCTTTTGATTGTTTCTCAC 57.174 32.000 0.00 0.00 0.00 3.51
330 331 8.839310 TTTGTTTTCCTTTTGATTGTTTCTCA 57.161 26.923 0.00 0.00 0.00 3.27
401 402 9.817809 GGTTTTCTCCTGTTTTTCTATTTTCTT 57.182 29.630 0.00 0.00 0.00 2.52
402 403 8.135529 CGGTTTTCTCCTGTTTTTCTATTTTCT 58.864 33.333 0.00 0.00 0.00 2.52
403 404 8.132995 TCGGTTTTCTCCTGTTTTTCTATTTTC 58.867 33.333 0.00 0.00 0.00 2.29
404 405 8.002984 TCGGTTTTCTCCTGTTTTTCTATTTT 57.997 30.769 0.00 0.00 0.00 1.82
405 406 7.501225 TCTCGGTTTTCTCCTGTTTTTCTATTT 59.499 33.333 0.00 0.00 0.00 1.40
406 407 6.996282 TCTCGGTTTTCTCCTGTTTTTCTATT 59.004 34.615 0.00 0.00 0.00 1.73
407 408 6.531021 TCTCGGTTTTCTCCTGTTTTTCTAT 58.469 36.000 0.00 0.00 0.00 1.98
408 409 5.920903 TCTCGGTTTTCTCCTGTTTTTCTA 58.079 37.500 0.00 0.00 0.00 2.10
409 410 4.777463 TCTCGGTTTTCTCCTGTTTTTCT 58.223 39.130 0.00 0.00 0.00 2.52
410 411 5.494632 TTCTCGGTTTTCTCCTGTTTTTC 57.505 39.130 0.00 0.00 0.00 2.29
411 412 5.592688 TCATTCTCGGTTTTCTCCTGTTTTT 59.407 36.000 0.00 0.00 0.00 1.94
412 413 5.130350 TCATTCTCGGTTTTCTCCTGTTTT 58.870 37.500 0.00 0.00 0.00 2.43
413 414 4.714632 TCATTCTCGGTTTTCTCCTGTTT 58.285 39.130 0.00 0.00 0.00 2.83
414 415 4.351874 TCATTCTCGGTTTTCTCCTGTT 57.648 40.909 0.00 0.00 0.00 3.16
415 416 4.351874 TTCATTCTCGGTTTTCTCCTGT 57.648 40.909 0.00 0.00 0.00 4.00
416 417 4.515191 TGTTTCATTCTCGGTTTTCTCCTG 59.485 41.667 0.00 0.00 0.00 3.86
417 418 4.714632 TGTTTCATTCTCGGTTTTCTCCT 58.285 39.130 0.00 0.00 0.00 3.69
418 419 5.238650 TCTTGTTTCATTCTCGGTTTTCTCC 59.761 40.000 0.00 0.00 0.00 3.71
419 420 6.300354 TCTTGTTTCATTCTCGGTTTTCTC 57.700 37.500 0.00 0.00 0.00 2.87
420 421 6.693315 TTCTTGTTTCATTCTCGGTTTTCT 57.307 33.333 0.00 0.00 0.00 2.52
421 422 7.165977 GTCTTTCTTGTTTCATTCTCGGTTTTC 59.834 37.037 0.00 0.00 0.00 2.29
422 423 6.972901 GTCTTTCTTGTTTCATTCTCGGTTTT 59.027 34.615 0.00 0.00 0.00 2.43
423 424 6.094881 TGTCTTTCTTGTTTCATTCTCGGTTT 59.905 34.615 0.00 0.00 0.00 3.27
424 425 5.588648 TGTCTTTCTTGTTTCATTCTCGGTT 59.411 36.000 0.00 0.00 0.00 4.44
425 426 5.123227 TGTCTTTCTTGTTTCATTCTCGGT 58.877 37.500 0.00 0.00 0.00 4.69
426 427 5.673337 TGTCTTTCTTGTTTCATTCTCGG 57.327 39.130 0.00 0.00 0.00 4.63
427 428 7.189512 ACTTTGTCTTTCTTGTTTCATTCTCG 58.810 34.615 0.00 0.00 0.00 4.04
428 429 8.917415 AACTTTGTCTTTCTTGTTTCATTCTC 57.083 30.769 0.00 0.00 0.00 2.87
432 433 9.072294 CGTTAAACTTTGTCTTTCTTGTTTCAT 57.928 29.630 0.00 0.00 0.00 2.57
433 434 8.291032 TCGTTAAACTTTGTCTTTCTTGTTTCA 58.709 29.630 0.00 0.00 0.00 2.69
434 435 8.663771 TCGTTAAACTTTGTCTTTCTTGTTTC 57.336 30.769 0.00 0.00 0.00 2.78
435 436 9.634163 ATTCGTTAAACTTTGTCTTTCTTGTTT 57.366 25.926 0.00 0.00 0.00 2.83
436 437 9.634163 AATTCGTTAAACTTTGTCTTTCTTGTT 57.366 25.926 0.00 0.00 0.00 2.83
437 438 9.634163 AAATTCGTTAAACTTTGTCTTTCTTGT 57.366 25.926 0.00 0.00 0.00 3.16
458 459 9.908152 TCTCTTCGGATTTTCCTTTTAAAATTC 57.092 29.630 0.09 0.00 38.77 2.17
460 461 9.692749 GTTCTCTTCGGATTTTCCTTTTAAAAT 57.307 29.630 0.09 0.00 40.79 1.82
461 462 8.139350 GGTTCTCTTCGGATTTTCCTTTTAAAA 58.861 33.333 0.00 0.00 33.30 1.52
462 463 7.285858 TGGTTCTCTTCGGATTTTCCTTTTAAA 59.714 33.333 0.00 0.00 33.30 1.52
463 464 6.773685 TGGTTCTCTTCGGATTTTCCTTTTAA 59.226 34.615 0.00 0.00 33.30 1.52
464 465 6.300703 TGGTTCTCTTCGGATTTTCCTTTTA 58.699 36.000 0.00 0.00 33.30 1.52
465 466 5.137551 TGGTTCTCTTCGGATTTTCCTTTT 58.862 37.500 0.00 0.00 33.30 2.27
466 467 4.725490 TGGTTCTCTTCGGATTTTCCTTT 58.275 39.130 0.00 0.00 33.30 3.11
467 468 4.202472 ACTGGTTCTCTTCGGATTTTCCTT 60.202 41.667 0.00 0.00 33.30 3.36
468 469 3.328050 ACTGGTTCTCTTCGGATTTTCCT 59.672 43.478 0.00 0.00 33.30 3.36
469 470 3.437049 CACTGGTTCTCTTCGGATTTTCC 59.563 47.826 0.00 0.00 0.00 3.13
470 471 4.315803 TCACTGGTTCTCTTCGGATTTTC 58.684 43.478 0.00 0.00 0.00 2.29
471 472 4.351874 TCACTGGTTCTCTTCGGATTTT 57.648 40.909 0.00 0.00 0.00 1.82
472 473 4.020218 TCATCACTGGTTCTCTTCGGATTT 60.020 41.667 0.00 0.00 0.00 2.17
473 474 3.515502 TCATCACTGGTTCTCTTCGGATT 59.484 43.478 0.00 0.00 0.00 3.01
474 475 3.099905 TCATCACTGGTTCTCTTCGGAT 58.900 45.455 0.00 0.00 0.00 4.18
475 476 2.525368 TCATCACTGGTTCTCTTCGGA 58.475 47.619 0.00 0.00 0.00 4.55
476 477 3.257393 CTTCATCACTGGTTCTCTTCGG 58.743 50.000 0.00 0.00 0.00 4.30
477 478 3.919216 ACTTCATCACTGGTTCTCTTCG 58.081 45.455 0.00 0.00 0.00 3.79
478 479 9.436957 TTTATTACTTCATCACTGGTTCTCTTC 57.563 33.333 0.00 0.00 0.00 2.87
479 480 9.793259 TTTTATTACTTCATCACTGGTTCTCTT 57.207 29.630 0.00 0.00 0.00 2.85
480 481 9.793259 TTTTTATTACTTCATCACTGGTTCTCT 57.207 29.630 0.00 0.00 0.00 3.10
506 507 3.122780 GCTGCTGTGTTTGTTTCGTTTTT 59.877 39.130 0.00 0.00 0.00 1.94
507 508 2.666022 GCTGCTGTGTTTGTTTCGTTTT 59.334 40.909 0.00 0.00 0.00 2.43
508 509 2.094752 AGCTGCTGTGTTTGTTTCGTTT 60.095 40.909 0.00 0.00 0.00 3.60
509 510 1.472480 AGCTGCTGTGTTTGTTTCGTT 59.528 42.857 0.00 0.00 0.00 3.85
510 511 1.094785 AGCTGCTGTGTTTGTTTCGT 58.905 45.000 0.00 0.00 0.00 3.85
511 512 3.035942 GTTAGCTGCTGTGTTTGTTTCG 58.964 45.455 13.43 0.00 0.00 3.46
512 513 4.027572 TGTTAGCTGCTGTGTTTGTTTC 57.972 40.909 13.43 0.00 0.00 2.78
513 514 3.694072 TCTGTTAGCTGCTGTGTTTGTTT 59.306 39.130 13.43 0.00 0.00 2.83
514 515 3.065371 GTCTGTTAGCTGCTGTGTTTGTT 59.935 43.478 13.43 0.00 0.00 2.83
515 516 2.614057 GTCTGTTAGCTGCTGTGTTTGT 59.386 45.455 13.43 0.00 0.00 2.83
516 517 2.031682 GGTCTGTTAGCTGCTGTGTTTG 60.032 50.000 13.43 0.00 0.00 2.93
517 518 2.222027 GGTCTGTTAGCTGCTGTGTTT 58.778 47.619 13.43 0.00 0.00 2.83
518 519 1.873903 CGGTCTGTTAGCTGCTGTGTT 60.874 52.381 13.43 0.00 0.00 3.32
519 520 0.319900 CGGTCTGTTAGCTGCTGTGT 60.320 55.000 13.43 0.00 0.00 3.72
520 521 0.038251 TCGGTCTGTTAGCTGCTGTG 60.038 55.000 13.43 0.00 0.00 3.66
521 522 0.679505 TTCGGTCTGTTAGCTGCTGT 59.320 50.000 13.43 0.00 0.00 4.40
522 523 1.071605 GTTCGGTCTGTTAGCTGCTG 58.928 55.000 13.43 0.00 0.00 4.41
523 524 0.388649 CGTTCGGTCTGTTAGCTGCT 60.389 55.000 7.57 7.57 0.00 4.24
524 525 0.388134 TCGTTCGGTCTGTTAGCTGC 60.388 55.000 0.00 0.00 0.00 5.25
525 526 2.060326 TTCGTTCGGTCTGTTAGCTG 57.940 50.000 0.00 0.00 0.00 4.24
526 527 2.230508 TCATTCGTTCGGTCTGTTAGCT 59.769 45.455 0.00 0.00 0.00 3.32
527 528 2.602878 TCATTCGTTCGGTCTGTTAGC 58.397 47.619 0.00 0.00 0.00 3.09
528 529 3.985279 TGTTCATTCGTTCGGTCTGTTAG 59.015 43.478 0.00 0.00 0.00 2.34
529 530 3.737266 GTGTTCATTCGTTCGGTCTGTTA 59.263 43.478 0.00 0.00 0.00 2.41
530 531 2.542595 GTGTTCATTCGTTCGGTCTGTT 59.457 45.455 0.00 0.00 0.00 3.16
531 532 2.132762 GTGTTCATTCGTTCGGTCTGT 58.867 47.619 0.00 0.00 0.00 3.41
532 533 2.096909 GTGTGTTCATTCGTTCGGTCTG 60.097 50.000 0.00 0.00 0.00 3.51
533 534 2.132762 GTGTGTTCATTCGTTCGGTCT 58.867 47.619 0.00 0.00 0.00 3.85
534 535 1.136721 CGTGTGTTCATTCGTTCGGTC 60.137 52.381 0.00 0.00 0.00 4.79
535 536 0.856641 CGTGTGTTCATTCGTTCGGT 59.143 50.000 0.00 0.00 0.00 4.69
536 537 1.133407 TCGTGTGTTCATTCGTTCGG 58.867 50.000 0.00 0.00 0.00 4.30
537 538 1.136721 GGTCGTGTGTTCATTCGTTCG 60.137 52.381 0.00 0.00 0.00 3.95
538 539 1.136721 CGGTCGTGTGTTCATTCGTTC 60.137 52.381 0.00 0.00 0.00 3.95
539 540 0.856641 CGGTCGTGTGTTCATTCGTT 59.143 50.000 0.00 0.00 0.00 3.85
540 541 0.031043 TCGGTCGTGTGTTCATTCGT 59.969 50.000 0.00 0.00 0.00 3.85
541 542 0.708370 CTCGGTCGTGTGTTCATTCG 59.292 55.000 0.00 0.00 0.00 3.34
542 543 2.060326 TCTCGGTCGTGTGTTCATTC 57.940 50.000 0.00 0.00 0.00 2.67
543 544 2.519377 TTCTCGGTCGTGTGTTCATT 57.481 45.000 0.00 0.00 0.00 2.57
544 545 2.132762 GTTTCTCGGTCGTGTGTTCAT 58.867 47.619 0.00 0.00 0.00 2.57
545 546 1.135053 TGTTTCTCGGTCGTGTGTTCA 60.135 47.619 0.00 0.00 0.00 3.18
546 547 1.257155 GTGTTTCTCGGTCGTGTGTTC 59.743 52.381 0.00 0.00 0.00 3.18
547 548 1.283736 GTGTTTCTCGGTCGTGTGTT 58.716 50.000 0.00 0.00 0.00 3.32
548 549 0.529119 GGTGTTTCTCGGTCGTGTGT 60.529 55.000 0.00 0.00 0.00 3.72
549 550 1.219522 GGGTGTTTCTCGGTCGTGTG 61.220 60.000 0.00 0.00 0.00 3.82
550 551 1.068585 GGGTGTTTCTCGGTCGTGT 59.931 57.895 0.00 0.00 0.00 4.49
551 552 0.599558 TAGGGTGTTTCTCGGTCGTG 59.400 55.000 0.00 0.00 0.00 4.35
552 553 0.600057 GTAGGGTGTTTCTCGGTCGT 59.400 55.000 0.00 0.00 0.00 4.34
553 554 0.886563 AGTAGGGTGTTTCTCGGTCG 59.113 55.000 0.00 0.00 0.00 4.79
554 555 3.128415 GTCTAGTAGGGTGTTTCTCGGTC 59.872 52.174 0.00 0.00 0.00 4.79
555 556 3.087781 GTCTAGTAGGGTGTTTCTCGGT 58.912 50.000 0.00 0.00 0.00 4.69
556 557 2.426381 GGTCTAGTAGGGTGTTTCTCGG 59.574 54.545 0.00 0.00 0.00 4.63
557 558 2.097142 CGGTCTAGTAGGGTGTTTCTCG 59.903 54.545 0.00 0.00 0.00 4.04
558 559 2.159268 GCGGTCTAGTAGGGTGTTTCTC 60.159 54.545 0.00 0.00 0.00 2.87
559 560 1.823610 GCGGTCTAGTAGGGTGTTTCT 59.176 52.381 0.00 0.00 0.00 2.52
560 561 1.823610 AGCGGTCTAGTAGGGTGTTTC 59.176 52.381 0.00 0.00 0.00 2.78
561 562 1.934410 AGCGGTCTAGTAGGGTGTTT 58.066 50.000 0.00 0.00 0.00 2.83
562 563 1.823610 GAAGCGGTCTAGTAGGGTGTT 59.176 52.381 0.00 0.00 0.00 3.32
563 564 1.272313 TGAAGCGGTCTAGTAGGGTGT 60.272 52.381 0.00 0.00 0.00 4.16
564 565 1.405821 CTGAAGCGGTCTAGTAGGGTG 59.594 57.143 0.00 0.00 0.00 4.61
565 566 1.685491 CCTGAAGCGGTCTAGTAGGGT 60.685 57.143 0.00 0.00 0.00 4.34
566 567 1.033574 CCTGAAGCGGTCTAGTAGGG 58.966 60.000 0.00 0.00 0.00 3.53
567 568 0.386113 GCCTGAAGCGGTCTAGTAGG 59.614 60.000 0.00 0.00 0.00 3.18
568 569 3.949031 GCCTGAAGCGGTCTAGTAG 57.051 57.895 0.00 0.00 0.00 2.57
578 579 4.698056 GCTTATTGCGCCTGAAGC 57.302 55.556 17.80 17.80 37.72 3.86
587 588 4.116238 GGGAGCTATATCTCGCTTATTGC 58.884 47.826 12.09 0.00 41.24 3.56
588 589 4.355437 CGGGAGCTATATCTCGCTTATTG 58.645 47.826 15.92 0.31 41.98 1.90
589 590 4.640789 CGGGAGCTATATCTCGCTTATT 57.359 45.455 15.92 0.00 41.98 1.40
605 606 0.305922 GCAAAGATCAATCGCGGGAG 59.694 55.000 6.13 0.00 0.00 4.30
606 607 1.095228 GGCAAAGATCAATCGCGGGA 61.095 55.000 6.13 4.03 0.00 5.14
607 608 1.097547 AGGCAAAGATCAATCGCGGG 61.098 55.000 6.13 0.00 0.00 6.13
608 609 0.305922 GAGGCAAAGATCAATCGCGG 59.694 55.000 6.13 0.00 0.00 6.46
609 610 0.305922 GGAGGCAAAGATCAATCGCG 59.694 55.000 0.00 0.00 0.00 5.87
610 611 1.673168 AGGAGGCAAAGATCAATCGC 58.327 50.000 0.00 0.00 0.00 4.58
611 612 2.615912 GGAAGGAGGCAAAGATCAATCG 59.384 50.000 0.00 0.00 0.00 3.34
612 613 3.882288 GAGGAAGGAGGCAAAGATCAATC 59.118 47.826 0.00 0.00 0.00 2.67
613 614 3.683847 CGAGGAAGGAGGCAAAGATCAAT 60.684 47.826 0.00 0.00 0.00 2.57
614 615 2.355108 CGAGGAAGGAGGCAAAGATCAA 60.355 50.000 0.00 0.00 0.00 2.57
615 616 1.208052 CGAGGAAGGAGGCAAAGATCA 59.792 52.381 0.00 0.00 0.00 2.92
616 617 1.208293 ACGAGGAAGGAGGCAAAGATC 59.792 52.381 0.00 0.00 0.00 2.75
617 618 1.208293 GACGAGGAAGGAGGCAAAGAT 59.792 52.381 0.00 0.00 0.00 2.40
618 619 0.608640 GACGAGGAAGGAGGCAAAGA 59.391 55.000 0.00 0.00 0.00 2.52
619 620 0.321671 TGACGAGGAAGGAGGCAAAG 59.678 55.000 0.00 0.00 0.00 2.77
620 621 0.034896 GTGACGAGGAAGGAGGCAAA 59.965 55.000 0.00 0.00 0.00 3.68
621 622 1.118965 TGTGACGAGGAAGGAGGCAA 61.119 55.000 0.00 0.00 0.00 4.52
622 623 1.533033 TGTGACGAGGAAGGAGGCA 60.533 57.895 0.00 0.00 0.00 4.75
623 624 1.079750 GTGTGACGAGGAAGGAGGC 60.080 63.158 0.00 0.00 0.00 4.70
624 625 0.038159 GTGTGTGACGAGGAAGGAGG 60.038 60.000 0.00 0.00 0.00 4.30
625 626 0.673985 TGTGTGTGACGAGGAAGGAG 59.326 55.000 0.00 0.00 0.00 3.69
626 627 1.338107 ATGTGTGTGACGAGGAAGGA 58.662 50.000 0.00 0.00 0.00 3.36
627 628 1.800586 CAATGTGTGTGACGAGGAAGG 59.199 52.381 0.00 0.00 0.00 3.46
628 629 2.476619 GACAATGTGTGTGACGAGGAAG 59.523 50.000 0.00 0.00 41.96 3.46
629 630 2.479837 GACAATGTGTGTGACGAGGAA 58.520 47.619 0.00 0.00 41.96 3.36
630 631 1.601914 CGACAATGTGTGTGACGAGGA 60.602 52.381 0.00 0.00 41.96 3.71
631 632 0.784178 CGACAATGTGTGTGACGAGG 59.216 55.000 0.00 0.00 41.96 4.63
632 633 1.766069 TCGACAATGTGTGTGACGAG 58.234 50.000 0.00 0.00 41.96 4.18
633 634 2.211353 TTCGACAATGTGTGTGACGA 57.789 45.000 0.00 0.00 41.96 4.20
634 635 3.217608 CATTTCGACAATGTGTGTGACG 58.782 45.455 0.00 0.00 41.96 4.35
635 636 3.554524 CCATTTCGACAATGTGTGTGAC 58.445 45.455 14.81 0.00 41.96 3.67
636 637 2.551887 CCCATTTCGACAATGTGTGTGA 59.448 45.455 14.81 0.00 41.96 3.58
637 638 2.921912 GCCCATTTCGACAATGTGTGTG 60.922 50.000 14.81 4.35 41.96 3.82
638 639 1.269448 GCCCATTTCGACAATGTGTGT 59.731 47.619 14.81 0.00 45.74 3.72
639 640 1.402720 GGCCCATTTCGACAATGTGTG 60.403 52.381 14.81 7.73 0.00 3.82
640 641 0.887933 GGCCCATTTCGACAATGTGT 59.112 50.000 14.81 0.00 0.00 3.72
641 642 1.133025 GAGGCCCATTTCGACAATGTG 59.867 52.381 0.00 8.21 0.00 3.21
642 643 1.463674 GAGGCCCATTTCGACAATGT 58.536 50.000 0.00 0.00 0.00 2.71
643 644 0.740737 GGAGGCCCATTTCGACAATG 59.259 55.000 0.00 11.19 0.00 2.82
644 645 0.748005 CGGAGGCCCATTTCGACAAT 60.748 55.000 0.00 0.00 0.00 2.71
645 646 1.376683 CGGAGGCCCATTTCGACAA 60.377 57.895 0.00 0.00 0.00 3.18
646 647 1.622607 ATCGGAGGCCCATTTCGACA 61.623 55.000 0.00 0.00 32.60 4.35
647 648 0.391597 TATCGGAGGCCCATTTCGAC 59.608 55.000 0.00 0.00 32.60 4.20
648 649 1.348064 ATATCGGAGGCCCATTTCGA 58.652 50.000 0.00 0.00 0.00 3.71
649 650 2.076863 GAATATCGGAGGCCCATTTCG 58.923 52.381 0.00 0.00 0.00 3.46
650 651 3.077359 CAGAATATCGGAGGCCCATTTC 58.923 50.000 0.00 0.00 0.00 2.17
651 652 2.224867 CCAGAATATCGGAGGCCCATTT 60.225 50.000 0.00 0.00 0.00 2.32
652 653 1.352352 CCAGAATATCGGAGGCCCATT 59.648 52.381 0.00 0.00 0.00 3.16
653 654 0.987294 CCAGAATATCGGAGGCCCAT 59.013 55.000 0.00 0.00 0.00 4.00
654 655 1.127567 CCCAGAATATCGGAGGCCCA 61.128 60.000 0.00 0.00 0.00 5.36
655 656 0.836400 TCCCAGAATATCGGAGGCCC 60.836 60.000 0.00 0.00 0.00 5.80
656 657 1.065854 CATCCCAGAATATCGGAGGCC 60.066 57.143 0.00 0.00 0.00 5.19
657 658 1.677217 GCATCCCAGAATATCGGAGGC 60.677 57.143 0.00 0.00 45.09 4.70
658 659 1.404717 CGCATCCCAGAATATCGGAGG 60.405 57.143 0.00 0.00 0.00 4.30
659 660 1.273606 ACGCATCCCAGAATATCGGAG 59.726 52.381 0.00 0.00 0.00 4.63
660 661 1.338107 ACGCATCCCAGAATATCGGA 58.662 50.000 0.00 0.00 0.00 4.55
661 662 2.069273 GAACGCATCCCAGAATATCGG 58.931 52.381 0.00 0.00 0.00 4.18
662 663 1.721389 CGAACGCATCCCAGAATATCG 59.279 52.381 0.00 0.00 0.00 2.92
712 713 8.609176 TGAAGTTTGAACAGTTTGTACTATGAC 58.391 33.333 0.00 0.00 31.96 3.06
716 717 8.455682 CCTTTGAAGTTTGAACAGTTTGTACTA 58.544 33.333 0.00 0.00 31.96 1.82
872 973 3.533547 GAGTGCAGCAGAATCTGAATCT 58.466 45.455 15.38 0.00 36.19 2.40
873 974 2.284684 CGAGTGCAGCAGAATCTGAATC 59.715 50.000 15.38 0.77 36.19 2.52
925 1026 0.804989 GATTGGTTGGAGCTCGGTTG 59.195 55.000 7.83 0.00 0.00 3.77
1244 1397 4.826733 AGTTGAGCAACCATGACAAATGTA 59.173 37.500 9.56 0.00 42.06 2.29
1245 1398 3.638160 AGTTGAGCAACCATGACAAATGT 59.362 39.130 9.56 0.00 42.06 2.71
1246 1399 3.985279 CAGTTGAGCAACCATGACAAATG 59.015 43.478 9.56 0.00 42.06 2.32
1248 1401 2.223782 GCAGTTGAGCAACCATGACAAA 60.224 45.455 9.56 0.00 42.06 2.83
1251 1404 0.953727 TGCAGTTGAGCAACCATGAC 59.046 50.000 9.56 1.52 42.46 3.06
1252 1405 3.418022 TGCAGTTGAGCAACCATGA 57.582 47.368 9.56 0.00 42.46 3.07
1260 1413 1.203994 AGATGGCAAATGCAGTTGAGC 59.796 47.619 29.48 15.34 44.36 4.26
1261 1414 2.477357 CGAGATGGCAAATGCAGTTGAG 60.477 50.000 29.48 5.43 44.36 3.02
1262 1415 1.469703 CGAGATGGCAAATGCAGTTGA 59.530 47.619 29.48 10.86 44.36 3.18
1263 1416 1.468565 CCGAGATGGCAAATGCAGTTG 60.469 52.381 21.96 21.96 44.36 3.16
1264 1417 0.813184 CCGAGATGGCAAATGCAGTT 59.187 50.000 7.80 0.00 44.36 3.16
1265 1418 1.033746 CCCGAGATGGCAAATGCAGT 61.034 55.000 7.80 0.00 44.36 4.40
1266 1419 1.033746 ACCCGAGATGGCAAATGCAG 61.034 55.000 7.80 0.00 44.36 4.41
1267 1420 1.001020 ACCCGAGATGGCAAATGCA 60.001 52.632 7.80 0.00 44.36 3.96
1268 1421 1.031571 TGACCCGAGATGGCAAATGC 61.032 55.000 0.00 0.00 41.14 3.56
1269 1422 1.402968 CTTGACCCGAGATGGCAAATG 59.597 52.381 0.00 0.00 35.87 2.32
1270 1423 1.004745 ACTTGACCCGAGATGGCAAAT 59.995 47.619 0.00 0.00 35.87 2.32
1271 1424 0.400213 ACTTGACCCGAGATGGCAAA 59.600 50.000 0.00 0.00 35.87 3.68
1272 1425 0.321564 CACTTGACCCGAGATGGCAA 60.322 55.000 0.00 0.00 35.87 4.52
1273 1426 1.296392 CACTTGACCCGAGATGGCA 59.704 57.895 0.00 0.00 35.87 4.92
1274 1427 0.741221 GACACTTGACCCGAGATGGC 60.741 60.000 0.00 0.00 35.87 4.40
1275 1428 0.608130 TGACACTTGACCCGAGATGG 59.392 55.000 0.00 0.00 37.55 3.51
1276 1429 1.546029 TCTGACACTTGACCCGAGATG 59.454 52.381 0.00 0.00 0.00 2.90
1277 1430 1.924731 TCTGACACTTGACCCGAGAT 58.075 50.000 0.00 0.00 0.00 2.75
1278 1431 1.546029 CATCTGACACTTGACCCGAGA 59.454 52.381 0.00 0.00 0.00 4.04
1279 1432 2.001812 CATCTGACACTTGACCCGAG 57.998 55.000 0.00 0.00 0.00 4.63
1280 1433 0.037326 GCATCTGACACTTGACCCGA 60.037 55.000 0.00 0.00 0.00 5.14
1281 1434 1.021390 GGCATCTGACACTTGACCCG 61.021 60.000 0.00 0.00 0.00 5.28
1282 1435 0.036732 TGGCATCTGACACTTGACCC 59.963 55.000 0.00 0.00 0.00 4.46
1283 1436 2.119801 ATGGCATCTGACACTTGACC 57.880 50.000 0.00 0.00 34.80 4.02
1284 1437 4.510038 AAAATGGCATCTGACACTTGAC 57.490 40.909 0.00 0.00 34.80 3.18
1285 1438 5.412594 GTCTAAAATGGCATCTGACACTTGA 59.587 40.000 0.00 0.00 34.80 3.02
1286 1439 5.634896 GTCTAAAATGGCATCTGACACTTG 58.365 41.667 0.00 0.00 34.80 3.16
1287 1440 4.393062 CGTCTAAAATGGCATCTGACACTT 59.607 41.667 0.00 0.00 34.80 3.16
1288 1441 3.935203 CGTCTAAAATGGCATCTGACACT 59.065 43.478 0.00 0.00 34.80 3.55
1289 1442 3.684788 ACGTCTAAAATGGCATCTGACAC 59.315 43.478 0.00 0.00 34.80 3.67
1290 1443 3.684305 CACGTCTAAAATGGCATCTGACA 59.316 43.478 0.00 0.00 37.54 3.58
1291 1444 3.932710 TCACGTCTAAAATGGCATCTGAC 59.067 43.478 0.00 6.28 0.00 3.51
1292 1445 4.200838 TCACGTCTAAAATGGCATCTGA 57.799 40.909 0.00 0.00 0.00 3.27
1293 1446 4.571984 TCATCACGTCTAAAATGGCATCTG 59.428 41.667 0.00 0.00 0.00 2.90
1294 1447 4.769688 TCATCACGTCTAAAATGGCATCT 58.230 39.130 0.00 0.00 0.00 2.90
1295 1448 5.266242 GTTCATCACGTCTAAAATGGCATC 58.734 41.667 0.00 0.00 0.00 3.91
1296 1449 4.201812 CGTTCATCACGTCTAAAATGGCAT 60.202 41.667 0.00 0.00 44.49 4.40
1297 1450 3.124466 CGTTCATCACGTCTAAAATGGCA 59.876 43.478 0.00 0.00 44.49 4.92
1298 1451 3.670203 CGTTCATCACGTCTAAAATGGC 58.330 45.455 0.00 0.00 44.49 4.40
1552 1730 5.314529 TCTAGCTAGCTCAATGGTACGTAT 58.685 41.667 23.26 0.00 0.00 3.06
1560 1738 1.336702 CGCCCTCTAGCTAGCTCAATG 60.337 57.143 23.26 10.35 0.00 2.82
1682 1874 8.818141 TGCGAGAGGAATCTGTAATTTATTAG 57.182 34.615 0.00 0.00 0.00 1.73
1686 1878 6.096987 ACTCTGCGAGAGGAATCTGTAATTTA 59.903 38.462 14.88 0.00 46.45 1.40
1716 1909 1.498865 CGTGCCACTTGTGGACAGAC 61.499 60.000 22.52 11.40 0.00 3.51
1763 1956 9.529325 TGTTAATTTACACCTTCGATGATCTAG 57.471 33.333 0.00 0.00 0.00 2.43
1826 2019 4.348168 CCACAGGATAATGCCTACTACCTT 59.652 45.833 0.00 0.00 36.22 3.50
1865 2058 9.631257 TTGAATATCTTGCCTCTCAATTTGATA 57.369 29.630 0.00 0.00 33.57 2.15
1924 2118 2.357760 TCCTTAACGCCCACACGC 60.358 61.111 0.00 0.00 36.19 5.34
1941 2135 0.892063 ACAAAACGTGTGGGCAAACT 59.108 45.000 0.00 0.00 39.72 2.66
2038 2237 2.203451 ACGTGTGAGAGGGACCGT 60.203 61.111 0.00 0.00 0.00 4.83
2055 2257 0.878416 GCATTTTGCCCACACGTAGA 59.122 50.000 0.00 0.00 37.42 2.59
2075 2277 1.153881 GAGAGGTCGTGGGCGTTAC 60.154 63.158 0.00 0.00 39.49 2.50
2251 2457 2.769652 TGGCATCTGGCACTTGACCC 62.770 60.000 1.83 0.00 46.12 4.46
2349 2695 6.785337 TGGCAACTGCTTAGTATTAGTAGA 57.215 37.500 1.06 0.00 41.70 2.59
2357 2703 4.450976 CCATACATGGCAACTGCTTAGTA 58.549 43.478 1.06 2.98 41.75 1.82
2384 2730 7.701539 TCAAATCATGGCAACTGTAGTAAAT 57.298 32.000 0.00 0.00 37.61 1.40
2418 2764 6.126883 TGCCTAGTGTTAGTATATGGCAACTT 60.127 38.462 0.00 0.00 44.86 2.66
2454 2800 1.394917 GCCATGTCTCTTTGTAGTGCG 59.605 52.381 0.00 0.00 0.00 5.34
2457 2803 4.887071 TGTTTTGCCATGTCTCTTTGTAGT 59.113 37.500 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.