AutoCloner

Multiple sequence alignment - TraesCS7D01G426000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G426000	chr7D	100.000	5330	0	0	1	5330	546130957	546125628	0.000000e+00	9843.0
1	TraesCS7D01G426000	chr7D	98.025	2633	52	0	435	3067	545659442	545662074	0.000000e+00	4575.0
2	TraesCS7D01G426000	chr7D	87.500	2000	243	5	1070	3067	545654797	545656791	0.000000e+00	2302.0
3	TraesCS7D01G426000	chr7D	86.281	1487	199	3	1093	2578	518777558	518779040	0.000000e+00	1611.0
4	TraesCS7D01G426000	chr7A	95.252	5371	194	25	4	5330	628868288	628862935	0.000000e+00	8449.0
5	TraesCS7D01G426000	chr7A	88.563	1976	224	2	1093	3067	628653232	628655206	0.000000e+00	2396.0
6	TraesCS7D01G426000	chr7A	87.104	1799	219	8	1093	2888	594452577	594454365	0.000000e+00	2025.0
7	TraesCS7D01G426000	chr7A	86.804	1455	187	5	1585	3037	169952411	169950960	0.000000e+00	1618.0
8	TraesCS7D01G426000	chr7A	85.141	249	23	11	4518	4755	628839811	628839566	5.330000e-60	243.0
9	TraesCS7D01G426000	chr7A	83.744	203	20	5	4426	4615	628864059	628863857	4.240000e-41	180.0
10	TraesCS7D01G426000	chr7A	84.699	183	18	6	4228	4410	628863859	628863687	1.970000e-39	174.0
11	TraesCS7D01G426000	chr7B	93.566	4989	239	26	405	5330	590108179	590103210	0.000000e+00	7360.0
12	TraesCS7D01G426000	chr7B	85.059	1941	274	16	1104	3036	589899230	589901162	0.000000e+00	1964.0
13	TraesCS7D01G426000	chr7B	87.095	1542	198	1	1103	2643	589939947	589941488	0.000000e+00	1744.0
14	TraesCS7D01G426000	chr7B	92.214	411	31	1	2657	3067	589942917	589943326	9.950000e-162	580.0
15	TraesCS7D01G426000	chr7B	91.077	325	10	8	39	352	590108510	590108194	6.380000e-114	422.0
16	TraesCS7D01G426000	chr6A	81.679	786	137	6	3335	4115	98914931	98914148	0.000000e+00	647.0
17	TraesCS7D01G426000	chr6A	78.976	918	178	12	3285	4193	98062712	98061801	3.530000e-171	612.0
18	TraesCS7D01G426000	chr6D	81.401	785	141	4	3335	4115	82207489	82206706	2.090000e-178	636.0
19	TraesCS7D01G426000	chr6D	78.812	892	178	10	3285	4169	81671633	81670746	1.650000e-164	590.0
20	TraesCS7D01G426000	chr6B	81.194	787	139	8	3335	4115	156526628	156525845	4.530000e-175	625.0
21	TraesCS7D01G426000	chr6B	78.867	918	179	13	3285	4193	156373775	156372864	1.640000e-169	606.0
22	TraesCS7D01G426000	chr3B	81.356	177	30	3	4253	4429	103906917	103907090	2.000000e-29	141.0
23	TraesCS7D01G426000	chr3B	79.459	185	27	9	4451	4625	103906917	103907100	2.610000e-23	121.0
24	TraesCS7D01G426000	chr2D	80.347	173	20	8	4265	4427	599455207	599455375	9.380000e-23	119.0
25	TraesCS7D01G426000	chr2D	90.385	52	4	1	4381	4432	31748009	31747959	3.450000e-07	67.6
26	TraesCS7D01G426000	chr2B	88.462	52	5	1	4381	4432	51884569	51884519	1.600000e-05	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G426000	chr7D	546125628	546130957	5329	True	9843.0	9843	100.0000	1	5330	1	chr7D.!!$R1	5329
1	TraesCS7D01G426000	chr7D	545654797	545662074	7277	False	3438.5	4575	92.7625	435	3067	2	chr7D.!!$F2	2632
2	TraesCS7D01G426000	chr7D	518777558	518779040	1482	False	1611.0	1611	86.2810	1093	2578	1	chr7D.!!$F1	1485
3	TraesCS7D01G426000	chr7A	628862935	628868288	5353	True	8449.0	8449	95.2520	4	5330	1	chr7A.!!$R3	5326
4	TraesCS7D01G426000	chr7A	628653232	628655206	1974	False	2396.0	2396	88.5630	1093	3067	1	chr7A.!!$F2	1974
5	TraesCS7D01G426000	chr7A	594452577	594454365	1788	False	2025.0	2025	87.1040	1093	2888	1	chr7A.!!$F1	1795
6	TraesCS7D01G426000	chr7A	169950960	169952411	1451	True	1618.0	1618	86.8040	1585	3037	1	chr7A.!!$R1	1452
7	TraesCS7D01G426000	chr7B	590103210	590108510	5300	True	3891.0	7360	92.3215	39	5330	2	chr7B.!!$R1	5291
8	TraesCS7D01G426000	chr7B	589899230	589901162	1932	False	1964.0	1964	85.0590	1104	3036	1	chr7B.!!$F1	1932
9	TraesCS7D01G426000	chr7B	589939947	589943326	3379	False	1162.0	1744	89.6545	1103	3067	2	chr7B.!!$F2	1964
10	TraesCS7D01G426000	chr6A	98914148	98914931	783	True	647.0	647	81.6790	3335	4115	1	chr6A.!!$R2	780
11	TraesCS7D01G426000	chr6A	98061801	98062712	911	True	612.0	612	78.9760	3285	4193	1	chr6A.!!$R1	908
12	TraesCS7D01G426000	chr6D	82206706	82207489	783	True	636.0	636	81.4010	3335	4115	1	chr6D.!!$R2	780
13	TraesCS7D01G426000	chr6D	81670746	81671633	887	True	590.0	590	78.8120	3285	4169	1	chr6D.!!$R1	884
14	TraesCS7D01G426000	chr6B	156525845	156526628	783	True	625.0	625	81.1940	3335	4115	1	chr6B.!!$R2	780
15	TraesCS7D01G426000	chr6B	156372864	156373775	911	True	606.0	606	78.8670	3285	4193	1	chr6B.!!$R1	908

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
403	421	0.179105	TTTTCCTATTCCGCGCGCTA	60.179	50.000	30.48	14.95	0.00	4.26	F
1123	1179	0.109551	TTCTGCTCTGCTTCGTCTCG	60.110	55.000	0.00	0.00	0.00	4.04	F
2170	7510	1.069049	ACCAACCTAGTTGCGTTACGT	59.931	47.619	6.63	0.00	41.62	3.57	F
3167	9926	0.108138	GCTGGGACGTCTGCTTATGT	60.108	55.000	16.46	0.00	0.00	2.29	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1560	1616	0.181350	AACCAGATTCCTCATCGCCC	59.819	55.000	0.00	0.00	36.93	6.13	R
2188	7528	0.251297	TTGGTGAGAACTGGCCATGG	60.251	55.000	5.51	7.63	0.00	3.66	R
3241	10000	2.745821	GCACAAGTCATCTGATGCAGAA	59.254	45.455	12.78	0.00	44.04	3.02	R
4654	11423	0.601311	GCAACAGCTCTGAACCGACT	60.601	55.000	3.60	0.00	0.00	4.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	3.884895	TCACACCAAATCTCGCCATTAT	58.115	40.909	0.00	0.00	0.00	1.28
158	168	4.541705	AGATAAGCTCCAAGTGCTCTCTA	58.458	43.478	0.00	0.00	40.22	2.43
176	186	5.374921	TCTCTACATGTACCTACCACTAGC	58.625	45.833	0.08	0.00	0.00	3.42
304	319	0.606401	CCCGCCTTCTCAGCAAAGAA	60.606	55.000	1.45	1.45	34.22	2.52
403	421	0.179105	TTTTCCTATTCCGCGCGCTA	60.179	50.000	30.48	14.95	0.00	4.26
431	449	6.393990	GTGAGAATCTATCAACGGCTATCAT	58.606	40.000	0.00	0.00	34.92	2.45
475	493	2.741517	CGGTGACATGCAAATACTGACA	59.258	45.455	0.00	0.00	0.00	3.58
512	552	6.451064	AGTTTACAGTTTGGTTTTCCTGAG	57.549	37.500	0.00	0.00	41.38	3.35
514	554	1.676006	ACAGTTTGGTTTTCCTGAGCG	59.324	47.619	0.00	0.00	41.38	5.03
529	569	1.870055	GAGCGTCAGGGTCGTACCAA	61.870	60.000	6.41	0.00	41.02	3.67
615	659	1.403679	TCAACACCAACTTCCAAAGCG	59.596	47.619	0.00	0.00	0.00	4.68
616	660	1.403679	CAACACCAACTTCCAAAGCGA	59.596	47.619	0.00	0.00	0.00	4.93
655	699	9.817809	CTAGACAAGGATATACAACAGCTAAAA	57.182	33.333	0.00	0.00	0.00	1.52
657	701	9.113838	AGACAAGGATATACAACAGCTAAAATG	57.886	33.333	0.00	0.00	0.00	2.32
658	702	8.807948	ACAAGGATATACAACAGCTAAAATGT	57.192	30.769	0.00	0.00	0.00	2.71
659	703	9.899661	ACAAGGATATACAACAGCTAAAATGTA	57.100	29.630	0.00	0.00	33.24	2.29
824	875	2.885502	CAAACGTGCAAAAGGAGCC	58.114	52.632	0.00	0.00	0.00	4.70
872	924	3.092301	GCCTCACCTTAGCCATTTTCTT	58.908	45.455	0.00	0.00	0.00	2.52
878	930	2.356069	CCTTAGCCATTTTCTTCGAGGC	59.644	50.000	1.53	1.53	45.54	4.70
944	999	2.120909	CCATCGCCCATGGTGGTTC	61.121	63.158	11.73	0.00	46.72	3.62
975	1030	1.375013	GGGTCCGAGTAGCGCAAAA	60.375	57.895	11.47	0.00	39.11	2.44
1069	1125	3.346315	CAGCAGATACACCACCAAATCA	58.654	45.455	0.00	0.00	0.00	2.57
1073	1129	4.525996	CAGATACACCACCAAATCATCCA	58.474	43.478	0.00	0.00	0.00	3.41
1123	1179	0.109551	TTCTGCTCTGCTTCGTCTCG	60.110	55.000	0.00	0.00	0.00	4.04
1126	1182	2.568612	CTCTGCTTCGTCTCGCCA	59.431	61.111	0.00	0.00	0.00	5.69
1291	1347	1.512926	GCACGGTCACAGATGTCTTT	58.487	50.000	0.00	0.00	0.00	2.52
1292	1348	1.195448	GCACGGTCACAGATGTCTTTG	59.805	52.381	0.00	0.00	0.00	2.77
1343	1399	1.301244	CCATCCCTCGGCGATCTTG	60.301	63.158	11.27	6.18	0.00	3.02
1352	1408	2.124983	GCGATCTTGCTGGCCTCA	60.125	61.111	3.32	0.00	0.00	3.86
1353	1409	1.746615	GCGATCTTGCTGGCCTCAA	60.747	57.895	3.32	7.59	0.00	3.02
1491	1547	2.408271	CTGCAAGCCTCAGATACCAA	57.592	50.000	0.00	0.00	33.54	3.67
1501	1557	3.133721	CCTCAGATACCAACCTTCCTCTG	59.866	52.174	0.00	0.00	33.16	3.35
1532	1588	7.329962	TGCTGAATATCTCAAGCAATTTGTTTG	59.670	33.333	17.03	17.03	39.49	2.93
1533	1589	7.201496	GCTGAATATCTCAAGCAATTTGTTTGG	60.201	37.037	21.13	13.92	38.79	3.28
1537	1593	3.062042	CTCAAGCAATTTGTTTGGAGGC	58.938	45.455	21.13	0.00	38.79	4.70
1560	1616	2.899256	AGTTTCCATCAACAACATGGGG	59.101	45.455	0.00	0.00	41.25	4.96
1582	1638	1.303309	CGATGAGGAATCTGGTTGCC	58.697	55.000	0.00	0.00	32.61	4.52
2170	7510	1.069049	ACCAACCTAGTTGCGTTACGT	59.931	47.619	6.63	0.00	41.62	3.57
2188	7528	4.425577	ACGTCTGGCTTTCAATCAATTC	57.574	40.909	0.00	0.00	0.00	2.17
3167	9926	0.108138	GCTGGGACGTCTGCTTATGT	60.108	55.000	16.46	0.00	0.00	2.29
3241	10000	5.812642	CGACATAGAGGCAAGTTCATTTACT	59.187	40.000	0.00	0.00	0.00	2.24
3469	10228	1.126846	CTCAACGGCGAAATGTGTCTC	59.873	52.381	16.62	0.00	0.00	3.36
4129	10891	4.574421	TGCAAGTGTATCAACCATAATCCG	59.426	41.667	0.00	0.00	0.00	4.18
4221	10983	9.538508	GGAAGTGTAGTTAAAAGTAGAACAGAA	57.461	33.333	0.00	0.00	0.00	3.02
4260	11022	5.046591	TGTGCTTTGCTAGACTAGGTGTAAT	60.047	40.000	11.48	0.00	0.00	1.89
4308	11070	4.381863	CAGATTGTACAGTCGTGTGTGTAC	59.618	45.833	12.18	5.82	46.20	2.90
4415	11181	1.986631	TCCAAACTCGGTTCCCCAATA	59.013	47.619	0.00	0.00	0.00	1.90
4509	11275	7.737972	AATTGTACAGTTATGTGTGTAAGCA	57.262	32.000	1.14	0.00	40.79	3.91
4516	11282	5.807520	CAGTTATGTGTGTAAGCAGAGTAGG	59.192	44.000	0.00	0.00	0.00	3.18
4590	11358	3.181440	TGGAAACATTTCAGCTCCAGACT	60.181	43.478	6.68	0.00	38.92	3.24
4592	11360	4.322567	GAAACATTTCAGCTCCAGACTCT	58.677	43.478	0.00	0.00	37.15	3.24
4654	11423	3.243068	GGCGCTGTTTGAGAAAAGAGAAA	60.243	43.478	7.64	0.00	0.00	2.52
4748	11518	2.472816	CAAAACACAGTGGGAACATGC	58.527	47.619	0.00	0.00	46.14	4.06
4792	11562	1.325943	GATTTCTCTGAGAAAGGCGCG	59.674	52.381	29.91	0.00	46.15	6.86
4858	11633	9.642327	TTGTTCCTATGACATTGAATTCATTTG	57.358	29.630	9.40	12.42	34.28	2.32
4867	11642	6.684686	ACATTGAATTCATTTGTGAGACCAG	58.315	36.000	18.60	1.37	0.00	4.00
4888	11663	0.308684	ATCACGCGCATATGGCTTTG	59.691	50.000	5.73	6.59	41.67	2.77
5079	11878	0.258774	AGGCGGGTTTGCTAATGGAT	59.741	50.000	0.00	0.00	34.52	3.41
5098	11897	2.106844	GGGCACCGAAAGCTAATGG	58.893	57.895	0.00	0.00	40.86	3.16
5100	11899	1.680338	GGCACCGAAAGCTAATGGAT	58.320	50.000	5.15	0.00	0.00	3.41
5102	11901	1.334869	GCACCGAAAGCTAATGGATGG	59.665	52.381	5.15	0.00	0.00	3.51
5103	11902	1.949525	CACCGAAAGCTAATGGATGGG	59.050	52.381	5.15	0.00	0.00	4.00
5104	11903	0.954452	CCGAAAGCTAATGGATGGGC	59.046	55.000	0.00	0.00	0.00	5.36
5105	11904	1.679139	CGAAAGCTAATGGATGGGCA	58.321	50.000	0.00	0.00	0.00	5.36
5148	11949	4.439253	AATTCCTAGGGTATCAAGTGGC	57.561	45.455	9.46	0.00	0.00	5.01
5153	11954	2.570386	AGGGTATCAAGTGGCTACCT	57.430	50.000	0.00	0.00	36.09	3.08

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.198827	AATGGCGAGATTTGGTGTGA	57.801	45.000	0.00	0.00	0.00	3.58
1	2	3.003689	GGATAATGGCGAGATTTGGTGTG	59.996	47.826	0.00	0.00	0.00	3.82
2	3	3.214328	GGATAATGGCGAGATTTGGTGT	58.786	45.455	0.00	0.00	0.00	4.16
14	15	1.680338	ACTCAAAGGCGGATAATGGC	58.320	50.000	0.00	0.00	0.00	4.40
21	22	0.179032	TTGCTCAACTCAAAGGCGGA	60.179	50.000	0.00	0.00	0.00	5.54
135	145	3.384467	AGAGAGCACTTGGAGCTTATCTC	59.616	47.826	0.00	0.00	43.58	2.75
158	168	2.029623	CCGCTAGTGGTAGGTACATGT	58.970	52.381	14.58	2.69	0.00	3.21
176	186	3.142174	AGGCACTTCTCTTCTTTTTCCG	58.858	45.455	0.00	0.00	27.25	4.30
304	319	2.214216	TGCCCTTACACGTGGAGCT	61.214	57.895	21.57	0.32	0.00	4.09
403	421	2.223829	CCGTTGATAGATTCTCACCGCT	60.224	50.000	0.00	0.00	28.48	5.52
431	449	2.159430	CGAAAATCGACAGCCATTGACA	59.841	45.455	0.00	0.00	43.74	3.58
512	552	1.082117	CATTGGTACGACCCTGACGC	61.082	60.000	0.00	0.00	37.50	5.19
514	554	1.739371	GCTCATTGGTACGACCCTGAC	60.739	57.143	0.00	0.00	37.50	3.51
524	564	5.065914	GCATATCTTTCTGGCTCATTGGTA	58.934	41.667	0.00	0.00	0.00	3.25
529	569	6.370186	TCTATGCATATCTTTCTGGCTCAT	57.630	37.500	6.92	0.00	0.00	2.90
615	659	2.920524	TGTCTAGGATCTCGTCACCTC	58.079	52.381	0.00	0.00	35.52	3.85
616	660	3.283751	CTTGTCTAGGATCTCGTCACCT	58.716	50.000	0.00	0.00	37.76	4.00
654	698	7.476540	TCCCTATGCAATACGACTATACATT	57.523	36.000	0.00	0.00	0.00	2.71
655	699	7.178628	ACTTCCCTATGCAATACGACTATACAT	59.821	37.037	0.00	0.00	0.00	2.29
656	700	6.492429	ACTTCCCTATGCAATACGACTATACA	59.508	38.462	0.00	0.00	0.00	2.29
657	701	6.921914	ACTTCCCTATGCAATACGACTATAC	58.078	40.000	0.00	0.00	0.00	1.47
658	702	7.375834	CAACTTCCCTATGCAATACGACTATA	58.624	38.462	0.00	0.00	0.00	1.31
659	703	6.223852	CAACTTCCCTATGCAATACGACTAT	58.776	40.000	0.00	0.00	0.00	2.12
660	704	5.452776	CCAACTTCCCTATGCAATACGACTA	60.453	44.000	0.00	0.00	0.00	2.59
661	705	4.442706	CAACTTCCCTATGCAATACGACT	58.557	43.478	0.00	0.00	0.00	4.18
662	706	3.560068	CCAACTTCCCTATGCAATACGAC	59.440	47.826	0.00	0.00	0.00	4.34
663	707	3.452990	TCCAACTTCCCTATGCAATACGA	59.547	43.478	0.00	0.00	0.00	3.43
664	708	3.560068	GTCCAACTTCCCTATGCAATACG	59.440	47.826	0.00	0.00	0.00	3.06
730	778	2.076863	CCGTTCCTCATGTTTGACCTC	58.923	52.381	0.00	0.00	0.00	3.85
824	875	2.476619	GGACGCATTCACATCCTAATCG	59.523	50.000	0.00	0.00	0.00	3.34
878	930	2.192608	GAAGAAGCTGCCTGCCGTTG	62.193	60.000	0.00	0.00	44.23	4.10
987	1042	2.168521	CCCTCTCATGAAACTCGGCTAA	59.831	50.000	0.00	0.00	0.00	3.09
1098	1154	2.513026	GAAGCAGAGCAGAAGGGCGA	62.513	60.000	0.00	0.00	39.27	5.54
1123	1179	3.368571	GTGCAGGAGCTGGTTGGC	61.369	66.667	0.00	0.00	42.74	4.52
1126	1182	3.241530	TCCGTGCAGGAGCTGGTT	61.242	61.111	8.24	0.00	45.98	3.67
1291	1347	0.471780	TGAGACCTCTGGAAGCCACA	60.472	55.000	0.00	0.00	0.00	4.17
1292	1348	0.248843	CTGAGACCTCTGGAAGCCAC	59.751	60.000	0.00	0.00	0.00	5.01
1352	1408	2.032681	GGACAGGTTGAGGCGCTT	59.967	61.111	7.64	0.00	0.00	4.68
1353	1409	4.021925	GGGACAGGTTGAGGCGCT	62.022	66.667	7.64	0.00	0.00	5.92
1478	1534	1.840635	AGGAAGGTTGGTATCTGAGGC	59.159	52.381	0.00	0.00	0.00	4.70
1501	1557	2.290093	GCTTGAGATATTCAGCACCTGC	59.710	50.000	0.00	0.00	37.07	4.85
1532	1588	1.177401	GTTGATGGAAACTGGCCTCC	58.823	55.000	3.32	2.38	0.00	4.30
1533	1589	1.909700	TGTTGATGGAAACTGGCCTC	58.090	50.000	3.32	0.00	0.00	4.70
1537	1593	3.306225	CCCATGTTGTTGATGGAAACTGG	60.306	47.826	0.00	0.00	42.81	4.00
1560	1616	0.181350	AACCAGATTCCTCATCGCCC	59.819	55.000	0.00	0.00	36.93	6.13
1582	1638	2.584791	GTGTTGTTGCTCGCATTAAGG	58.415	47.619	0.00	0.00	0.00	2.69
2170	7510	4.160814	CCATGGAATTGATTGAAAGCCAGA	59.839	41.667	5.56	0.00	0.00	3.86
2188	7528	0.251297	TTGGTGAGAACTGGCCATGG	60.251	55.000	5.51	7.63	0.00	3.66
2345	7689	2.722094	TGTTTCATCCTGTGGTATGGC	58.278	47.619	0.00	0.00	0.00	4.40
3167	9926	3.711704	ACAGAGTTTGTTCTTCTGAGGGA	59.288	43.478	7.64	0.00	36.31	4.20
3241	10000	2.745821	GCACAAGTCATCTGATGCAGAA	59.254	45.455	12.78	0.00	44.04	3.02
3469	10228	2.749076	TGCGGTGAATTCTCTTTCCATG	59.251	45.455	7.05	0.00	0.00	3.66
4221	10983	3.508845	AGCACAAGATTACCACCTGTT	57.491	42.857	0.00	0.00	0.00	3.16
4260	11022	8.647796	TGTTAGAAAACAATCCTTCTACTCAGA	58.352	33.333	0.00	0.00	42.60	3.27
4415	11181	4.261031	GCGCAAGAATACCATTTTCCGTAT	60.261	41.667	0.30	0.00	43.02	3.06
4509	11275	4.087907	ACTACGAGCCTTTTTCCTACTCT	58.912	43.478	0.00	0.00	0.00	3.24
4590	11358	3.006110	ACTTTCCGTAATCGTGGAACAGA	59.994	43.478	0.00	0.00	43.68	3.41
4592	11360	3.061322	CACTTTCCGTAATCGTGGAACA	58.939	45.455	0.00	0.00	43.68	3.18
4634	11402	5.162000	ACTTTCTCTTTTCTCAAACAGCG	57.838	39.130	0.00	0.00	0.00	5.18
4654	11423	0.601311	GCAACAGCTCTGAACCGACT	60.601	55.000	3.60	0.00	0.00	4.18
4748	11518	7.087007	TCGAAACTATTCTGCTAGCATATCAG	58.913	38.462	19.72	15.18	36.20	2.90
4767	11537	4.434857	CGCCTTTCTCAGAGAAATCGAAAC	60.435	45.833	27.20	14.42	42.66	2.78
4792	11562	3.665745	AATGTTGGACTTCCATGTTGC	57.334	42.857	0.00	0.00	46.97	4.17
4858	11633	1.687494	GCGCGTGATTCTGGTCTCAC	61.687	60.000	8.43	0.00	38.69	3.51
4867	11642	4.826600	GCCATATGCGCGTGATTC	57.173	55.556	13.61	0.00	0.00	2.52
4888	11663	1.308783	GGCAGCAGTTAGGACTTGGC	61.309	60.000	0.00	0.00	33.71	4.52
5079	11878	0.679640	CCATTAGCTTTCGGTGCCCA	60.680	55.000	0.00	0.00	0.00	5.36
5092	11891	1.898574	GGCGGTGCCCATCCATTAG	60.899	63.158	0.00	0.00	44.06	1.73
5093	11892	2.194597	GGCGGTGCCCATCCATTA	59.805	61.111	0.00	0.00	44.06	1.90
5103	11902	4.645921	GGTTGTTGCTGGCGGTGC	62.646	66.667	0.00	0.00	0.00	5.01
5104	11903	2.290122	TTTGGTTGTTGCTGGCGGTG	62.290	55.000	0.00	0.00	0.00	4.94
5105	11904	1.398958	ATTTGGTTGTTGCTGGCGGT	61.399	50.000	0.00	0.00	0.00	5.68

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.