Multiple sequence alignment - TraesCS7D01G425300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G425300 chr7D 100.000 3214 0 0 1 3214 545645908 545649121 0.000000e+00 5936.0
1 TraesCS7D01G425300 chr7D 87.359 1598 126 38 1155 2710 545622618 545621055 0.000000e+00 1762.0
2 TraesCS7D01G425300 chr7D 91.538 780 54 5 1263 2039 545650605 545651375 0.000000e+00 1064.0
3 TraesCS7D01G425300 chr7D 87.903 744 79 6 1268 2007 545619797 545619061 0.000000e+00 865.0
4 TraesCS7D01G425300 chr7D 77.568 1324 179 70 1155 2424 509573798 509572539 0.000000e+00 691.0
5 TraesCS7D01G425300 chr7D 86.094 640 61 17 2055 2686 545619081 545618462 0.000000e+00 664.0
6 TraesCS7D01G425300 chr7D 81.732 843 75 42 2163 2975 545651404 545652197 5.850000e-177 630.0
7 TraesCS7D01G425300 chr7D 96.703 91 3 0 3124 3214 546780336 546780426 5.550000e-33 152.0
8 TraesCS7D01G425300 chr7D 97.333 75 2 0 3140 3214 545652361 545652435 9.360000e-26 128.0
9 TraesCS7D01G425300 chr7D 97.368 38 1 0 649 686 545646346 545646383 7.440000e-07 65.8
10 TraesCS7D01G425300 chr7D 97.368 38 1 0 439 476 545646556 545646593 7.440000e-07 65.8
11 TraesCS7D01G425300 chr7B 87.278 1745 149 37 1034 2749 589700827 589699127 0.000000e+00 1925.0
12 TraesCS7D01G425300 chr7B 94.547 917 49 1 2298 3214 589737728 589738643 0.000000e+00 1415.0
13 TraesCS7D01G425300 chr7B 91.813 684 25 6 180 863 589701509 589700857 0.000000e+00 924.0
14 TraesCS7D01G425300 chr7B 95.021 241 11 1 2314 2554 589692308 589692069 8.420000e-101 377.0
15 TraesCS7D01G425300 chr7B 82.817 355 28 15 1905 2253 589692654 589692327 1.460000e-73 287.0
16 TraesCS7D01G425300 chr7B 84.000 175 27 1 3 177 589701744 589701571 1.980000e-37 167.0
17 TraesCS7D01G425300 chr7B 81.609 174 16 8 2854 3011 537744784 537744611 2.600000e-26 130.0
18 TraesCS7D01G425300 chr7B 97.333 75 2 0 3140 3214 589936850 589936924 9.360000e-26 128.0
19 TraesCS7D01G425300 chr7B 90.110 91 8 1 3124 3214 589922613 589922702 2.030000e-22 117.0
20 TraesCS7D01G425300 chr7B 95.122 41 2 0 439 479 589701070 589701030 7.440000e-07 65.8
21 TraesCS7D01G425300 chr7B 95.122 41 2 0 649 689 589701264 589701224 7.440000e-07 65.8
22 TraesCS7D01G425300 chr7A 87.823 1626 116 42 1155 2749 628492316 628490742 0.000000e+00 1831.0
23 TraesCS7D01G425300 chr7A 87.269 1351 103 43 1155 2469 626992646 626991329 0.000000e+00 1478.0
24 TraesCS7D01G425300 chr7A 84.183 1549 166 42 1155 2686 628488077 628486591 0.000000e+00 1430.0
25 TraesCS7D01G425300 chr7A 86.712 1189 64 28 9 1127 628519431 628520595 0.000000e+00 1234.0
26 TraesCS7D01G425300 chr7A 83.691 1165 115 43 1034 2158 628390140 628389011 0.000000e+00 1029.0
27 TraesCS7D01G425300 chr7A 97.800 409 9 0 2806 3214 628485700 628485292 0.000000e+00 706.0
28 TraesCS7D01G425300 chr7A 92.857 294 14 3 2423 2710 628521691 628521983 1.380000e-113 420.0
29 TraesCS7D01G425300 chr7A 86.181 398 39 13 2324 2710 627230231 627229839 1.780000e-112 416.0
30 TraesCS7D01G425300 chr7A 87.732 269 29 2 2445 2710 626990574 626990307 8.660000e-81 311.0
31 TraesCS7D01G425300 chr7A 85.656 244 10 8 2062 2288 628521283 628521518 1.930000e-57 233.0
32 TraesCS7D01G425300 chr7A 90.533 169 7 2 2086 2253 169957618 169957458 6.980000e-52 215.0
33 TraesCS7D01G425300 chr7A 94.505 91 4 1 3124 3214 629766091 629766002 4.320000e-29 139.0
34 TraesCS7D01G425300 chr7A 97.368 38 1 0 649 686 628519852 628519889 7.440000e-07 65.8
35 TraesCS7D01G425300 chr7A 97.368 38 1 0 439 476 628520056 628520093 7.440000e-07 65.8
36 TraesCS7D01G425300 chr5D 89.168 1034 67 20 1035 2054 331837653 331838655 0.000000e+00 1247.0
37 TraesCS7D01G425300 chr5D 87.523 1066 66 21 3 1039 331836580 331837607 0.000000e+00 1170.0
38 TraesCS7D01G425300 chr5D 89.474 798 68 10 1263 2048 289355180 289354387 0.000000e+00 994.0
39 TraesCS7D01G425300 chr5D 86.449 642 39 9 2073 2710 331838620 331839217 0.000000e+00 660.0
40 TraesCS7D01G425300 chr1B 86.908 1077 75 22 1034 2054 398840587 398839521 0.000000e+00 1147.0
41 TraesCS7D01G425300 chr1B 85.932 917 80 21 1155 2048 426496960 426496070 0.000000e+00 933.0
42 TraesCS7D01G425300 chr1B 88.514 740 69 9 1264 1991 133124010 133123275 0.000000e+00 881.0
43 TraesCS7D01G425300 chr1B 90.247 687 26 12 177 863 398841387 398840742 0.000000e+00 859.0
44 TraesCS7D01G425300 chr1B 90.278 216 18 2 1842 2054 398965154 398965369 2.440000e-71 279.0
45 TraesCS7D01G425300 chr1B 92.308 91 7 0 3124 3214 133108245 133108155 2.600000e-26 130.0
46 TraesCS7D01G425300 chr1B 90.110 91 8 1 3124 3214 398966168 398966257 2.030000e-22 117.0
47 TraesCS7D01G425300 chr1B 92.000 75 5 1 971 1045 398840703 398840630 1.580000e-18 104.0
48 TraesCS7D01G425300 chr6A 83.034 1279 128 39 1034 2257 158245687 158244443 0.000000e+00 1077.0
49 TraesCS7D01G425300 chr6A 87.037 108 8 3 1155 1262 158246049 158245948 2.030000e-22 117.0
50 TraesCS7D01G425300 chr6D 88.132 910 71 19 1155 2049 124609387 124608500 0.000000e+00 1048.0
51 TraesCS7D01G425300 chr6D 84.889 1039 86 27 1034 2029 122979446 122980456 0.000000e+00 983.0
52 TraesCS7D01G425300 chr6D 87.026 871 50 27 177 1003 122987168 122988019 0.000000e+00 924.0
53 TraesCS7D01G425300 chr6D 88.180 643 50 16 2062 2684 124608541 124607905 0.000000e+00 743.0
54 TraesCS7D01G425300 chr6D 89.005 382 28 7 2111 2483 122980461 122980837 8.120000e-126 460.0
55 TraesCS7D01G425300 chr6D 82.836 134 12 7 1034 1158 124609550 124609419 3.390000e-20 110.0
56 TraesCS7D01G425300 chr6D 97.368 38 1 0 649 686 122987424 122987461 7.440000e-07 65.8
57 TraesCS7D01G425300 chr6D 80.435 92 11 5 1097 1188 122989519 122989603 2.680000e-06 63.9
58 TraesCS7D01G425300 chr6D 97.143 35 1 0 439 473 122987627 122987661 3.460000e-05 60.2
59 TraesCS7D01G425300 chr6B 86.159 867 75 24 1155 2003 216631670 216632509 0.000000e+00 894.0
60 TraesCS7D01G425300 chr6B 84.112 107 2 3 1036 1127 216631511 216631617 4.420000e-14 89.8
61 TraesCS7D01G425300 chr2B 91.057 369 11 9 2112 2469 135466545 135466902 2.240000e-131 479.0
62 TraesCS7D01G425300 chr2B 91.597 357 10 8 2119 2466 182131097 182130752 2.900000e-130 475.0
63 TraesCS7D01G425300 chr3A 84.848 132 9 6 1155 1276 55501424 55501294 4.350000e-24 122.0
64 TraesCS7D01G425300 chr3D 84.375 128 13 3 1155 1276 43727566 43727440 5.630000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G425300 chr7D 545645908 545649121 3213 False 2022.533333 5936 98.245333 1 3214 3 chr7D.!!$F2 3213
1 TraesCS7D01G425300 chr7D 545618462 545622618 4156 True 1097.000000 1762 87.118667 1155 2710 3 chr7D.!!$R2 1555
2 TraesCS7D01G425300 chr7D 509572539 509573798 1259 True 691.000000 691 77.568000 1155 2424 1 chr7D.!!$R1 1269
3 TraesCS7D01G425300 chr7D 545650605 545652435 1830 False 607.333333 1064 90.201000 1263 3214 3 chr7D.!!$F3 1951
4 TraesCS7D01G425300 chr7B 589737728 589738643 915 False 1415.000000 1415 94.547000 2298 3214 1 chr7B.!!$F1 916
5 TraesCS7D01G425300 chr7B 589699127 589701744 2617 True 629.520000 1925 90.667000 3 2749 5 chr7B.!!$R3 2746
6 TraesCS7D01G425300 chr7B 589692069 589692654 585 True 332.000000 377 88.919000 1905 2554 2 chr7B.!!$R2 649
7 TraesCS7D01G425300 chr7A 628485292 628492316 7024 True 1322.333333 1831 89.935333 1155 3214 3 chr7A.!!$R6 2059
8 TraesCS7D01G425300 chr7A 628389011 628390140 1129 True 1029.000000 1029 83.691000 1034 2158 1 chr7A.!!$R3 1124
9 TraesCS7D01G425300 chr7A 626990307 626992646 2339 True 894.500000 1478 87.500500 1155 2710 2 chr7A.!!$R5 1555
10 TraesCS7D01G425300 chr7A 628519431 628521983 2552 False 403.720000 1234 91.992200 9 2710 5 chr7A.!!$F1 2701
11 TraesCS7D01G425300 chr5D 331836580 331839217 2637 False 1025.666667 1247 87.713333 3 2710 3 chr5D.!!$F1 2707
12 TraesCS7D01G425300 chr5D 289354387 289355180 793 True 994.000000 994 89.474000 1263 2048 1 chr5D.!!$R1 785
13 TraesCS7D01G425300 chr1B 426496070 426496960 890 True 933.000000 933 85.932000 1155 2048 1 chr1B.!!$R3 893
14 TraesCS7D01G425300 chr1B 133123275 133124010 735 True 881.000000 881 88.514000 1264 1991 1 chr1B.!!$R2 727
15 TraesCS7D01G425300 chr1B 398839521 398841387 1866 True 703.333333 1147 89.718333 177 2054 3 chr1B.!!$R4 1877
16 TraesCS7D01G425300 chr6A 158244443 158246049 1606 True 597.000000 1077 85.035500 1034 2257 2 chr6A.!!$R1 1223
17 TraesCS7D01G425300 chr6D 122979446 122980837 1391 False 721.500000 983 86.947000 1034 2483 2 chr6D.!!$F1 1449
18 TraesCS7D01G425300 chr6D 124607905 124609550 1645 True 633.666667 1048 86.382667 1034 2684 3 chr6D.!!$R1 1650
19 TraesCS7D01G425300 chr6D 122987168 122989603 2435 False 278.475000 924 90.493000 177 1188 4 chr6D.!!$F2 1011
20 TraesCS7D01G425300 chr6B 216631511 216632509 998 False 491.900000 894 85.135500 1036 2003 2 chr6B.!!$F1 967

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.179121 TTTGCGTACCGATGCGAGAT 60.179 50.0 0.0 0.0 40.8 2.75 F
1237 2925 0.470080 CCGCATCCTCTTCCTCCCTA 60.470 60.0 0.0 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1255 2943 0.171231 CGAGAGCAACGATGAGACCA 59.829 55.0 0.00 0.0 0.00 4.02 R
2864 13436 2.286654 GCGAAAAGCTGCAGATGATACC 60.287 50.0 20.43 0.0 44.04 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.179121 TTTGCGTACCGATGCGAGAT 60.179 50.000 0.00 0.00 40.80 2.75
52 53 5.319453 AGATGATGTTGGATGACAAAGTGT 58.681 37.500 0.00 0.00 41.58 3.55
94 103 1.143183 TCTACGGGCGATTTGAGGC 59.857 57.895 0.00 0.00 0.00 4.70
104 113 2.426522 CGATTTGAGGCTCCACTTTGA 58.573 47.619 12.86 0.00 0.00 2.69
114 123 1.542915 CTCCACTTTGAACATGCCCTG 59.457 52.381 0.00 0.00 0.00 4.45
116 125 1.962807 CCACTTTGAACATGCCCTGAA 59.037 47.619 0.00 0.00 0.00 3.02
257 331 4.035558 TGCAGAATTTTCTATGTCGCATCC 59.964 41.667 0.00 0.00 35.34 3.51
302 376 5.763204 GTCATGTTGAACCCTTGTCTAAAGA 59.237 40.000 0.00 0.00 0.00 2.52
303 377 5.997746 TCATGTTGAACCCTTGTCTAAAGAG 59.002 40.000 0.00 0.00 0.00 2.85
304 378 5.623956 TGTTGAACCCTTGTCTAAAGAGA 57.376 39.130 0.00 0.00 0.00 3.10
305 379 5.996644 TGTTGAACCCTTGTCTAAAGAGAA 58.003 37.500 0.00 0.00 31.96 2.87
306 380 6.055588 TGTTGAACCCTTGTCTAAAGAGAAG 58.944 40.000 9.35 9.35 42.89 2.85
314 388 7.932491 ACCCTTGTCTAAAGAGAAGAAAGTAAC 59.068 37.037 16.21 0.00 45.16 2.50
389 463 7.672983 TTTAGATGAACTGGAGTGACAATTC 57.327 36.000 0.00 0.00 0.00 2.17
390 464 4.583871 AGATGAACTGGAGTGACAATTCC 58.416 43.478 1.17 1.17 32.81 3.01
411 485 3.560025 CCTTGGACAAACTGGAGCACTAT 60.560 47.826 0.00 0.00 0.00 2.12
542 617 3.306641 GCTTTGAGACAGTCCATGAGAGT 60.307 47.826 0.00 0.00 0.00 3.24
625 701 0.536006 AGGTTCTGCTTGACACCTGC 60.536 55.000 10.60 0.00 35.98 4.85
628 704 2.674380 CTGCTTGACACCTGCCCC 60.674 66.667 0.00 0.00 0.00 5.80
818 919 1.376424 CTGAACCTGCAGCCGTGAT 60.376 57.895 8.66 0.00 0.00 3.06
863 964 5.089970 TCCTCTGATTCATGACATTCGTT 57.910 39.130 0.00 0.00 0.00 3.85
864 965 5.111989 TCCTCTGATTCATGACATTCGTTC 58.888 41.667 0.00 0.00 0.00 3.95
865 966 4.272018 CCTCTGATTCATGACATTCGTTCC 59.728 45.833 0.00 0.00 0.00 3.62
866 967 4.831107 TCTGATTCATGACATTCGTTCCA 58.169 39.130 0.00 0.00 0.00 3.53
867 968 5.244755 TCTGATTCATGACATTCGTTCCAA 58.755 37.500 0.00 0.00 0.00 3.53
868 969 5.882000 TCTGATTCATGACATTCGTTCCAAT 59.118 36.000 0.00 0.00 0.00 3.16
1132 2749 7.484035 AGCTATACTCGGATTCAAATCAAAC 57.516 36.000 5.19 0.00 37.15 2.93
1133 2750 6.483640 AGCTATACTCGGATTCAAATCAAACC 59.516 38.462 5.19 0.00 37.15 3.27
1134 2751 6.260050 GCTATACTCGGATTCAAATCAAACCA 59.740 38.462 5.19 0.00 37.15 3.67
1136 2753 5.982890 ACTCGGATTCAAATCAAACCAAT 57.017 34.783 5.19 0.00 37.15 3.16
1137 2754 6.345096 ACTCGGATTCAAATCAAACCAATT 57.655 33.333 5.19 0.00 37.15 2.32
1237 2925 0.470080 CCGCATCCTCTTCCTCCCTA 60.470 60.000 0.00 0.00 0.00 3.53
1261 2961 2.582498 CCGGATCGCGTTGGTCTC 60.582 66.667 5.77 0.00 0.00 3.36
1285 3019 2.202623 GCTCTCGCGATTCCACGT 60.203 61.111 10.36 0.00 35.59 4.49
1326 3060 2.486042 GTGCTCCCGTCGTCTCTC 59.514 66.667 0.00 0.00 0.00 3.20
1449 3201 2.264480 CGTCCCAGATCCGTGCAA 59.736 61.111 0.00 0.00 0.00 4.08
1784 3572 4.394712 CCGGCGAAAGGTGGAGCT 62.395 66.667 9.30 0.00 0.00 4.09
1965 10637 0.036952 ACGGATGAGTGCTCAAGTGG 60.037 55.000 5.95 0.00 43.58 4.00
2236 11032 7.771183 TCAATTAATGCAAGGGATTGTTCTAC 58.229 34.615 12.27 0.00 0.00 2.59
2260 11059 6.037172 ACGTAAAAGCATTGGATCTGATGTAC 59.963 38.462 0.00 0.00 0.00 2.90
2261 11060 6.258727 CGTAAAAGCATTGGATCTGATGTACT 59.741 38.462 0.00 0.00 0.00 2.73
2262 11061 7.438160 CGTAAAAGCATTGGATCTGATGTACTA 59.562 37.037 0.00 0.00 0.00 1.82
2286 11099 3.373439 GCAAGTAGCACCAGATCTCTTTG 59.627 47.826 0.00 0.00 44.79 2.77
2607 12341 3.118408 TGGTGTATATGCCAGACCAGTTC 60.118 47.826 0.00 0.00 32.81 3.01
2608 12342 3.118408 GGTGTATATGCCAGACCAGTTCA 60.118 47.826 0.00 0.00 0.00 3.18
2617 12351 3.415212 CCAGACCAGTTCAATGTCACAT 58.585 45.455 0.00 0.00 0.00 3.21
2624 12358 3.996363 CAGTTCAATGTCACATCGGAGAA 59.004 43.478 0.00 0.00 43.58 2.87
2625 12359 4.452114 CAGTTCAATGTCACATCGGAGAAA 59.548 41.667 0.00 0.00 43.58 2.52
2757 12508 5.798132 AGTACACAGCTTCATCTGAATTCA 58.202 37.500 8.12 8.12 37.51 2.57
2864 13436 4.399618 TCTTCTTCCTCATCTGTACCTTCG 59.600 45.833 0.00 0.00 0.00 3.79
3007 13579 7.292292 CCATTAATTTGTTTGCATCTTGTGTG 58.708 34.615 0.00 0.00 0.00 3.82
3057 13630 6.770303 TCAGGATGATTGTAGACACAAAACAA 59.230 34.615 0.00 0.00 42.56 2.83
3121 13696 9.958180 TCAGAGTTAATATTGATGTTTCCTTCA 57.042 29.630 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.545742 CCAACATCATCTCGCATCGGTA 60.546 50.000 0.00 0.00 0.00 4.02
32 33 4.206375 ACACACTTTGTCATCCAACATCA 58.794 39.130 0.00 0.00 29.79 3.07
94 103 1.542915 CAGGGCATGTTCAAAGTGGAG 59.457 52.381 0.00 0.00 0.00 3.86
114 123 0.521735 GGTGGAATCGTGTGCCTTTC 59.478 55.000 0.00 0.00 0.00 2.62
116 125 0.179004 TTGGTGGAATCGTGTGCCTT 60.179 50.000 0.00 0.00 0.00 4.35
184 257 7.291182 AGGGAGCATACATATTTGTACTTCTCT 59.709 37.037 14.65 9.07 41.02 3.10
191 264 8.721133 TTCTCTAGGGAGCATACATATTTGTA 57.279 34.615 0.00 0.00 39.62 2.41
306 380 9.787532 TGCAAATAGCTCATTATTGTTACTTTC 57.212 29.630 0.00 0.00 45.94 2.62
314 388 8.350722 AGAAGACATGCAAATAGCTCATTATTG 58.649 33.333 0.00 0.00 45.94 1.90
389 463 0.954452 GTGCTCCAGTTTGTCCAAGG 59.046 55.000 0.00 0.00 0.00 3.61
390 464 1.972872 AGTGCTCCAGTTTGTCCAAG 58.027 50.000 0.00 0.00 0.00 3.61
542 617 3.569701 GGCAACATCCAAACTTCTCTCAA 59.430 43.478 0.00 0.00 0.00 3.02
628 704 1.917782 TTTTCGCCCTCATTTCGCCG 61.918 55.000 0.00 0.00 0.00 6.46
887 1003 0.315886 TCGTTGCTCTGTCGGCTTAA 59.684 50.000 0.00 0.00 0.00 1.85
889 1005 1.373497 CTCGTTGCTCTGTCGGCTT 60.373 57.895 0.00 0.00 0.00 4.35
993 1123 5.924254 TCAGCGTTAGAATTATACATTCGGG 59.076 40.000 0.00 0.00 33.51 5.14
1130 2747 5.594317 GCAACCAGGAGTATATCAATTGGTT 59.406 40.000 5.42 0.44 43.61 3.67
1132 2749 4.520492 GGCAACCAGGAGTATATCAATTGG 59.480 45.833 5.42 0.00 33.79 3.16
1133 2750 4.214119 CGGCAACCAGGAGTATATCAATTG 59.786 45.833 0.00 0.00 0.00 2.32
1134 2751 4.389374 CGGCAACCAGGAGTATATCAATT 58.611 43.478 0.00 0.00 0.00 2.32
1136 2753 2.484770 GCGGCAACCAGGAGTATATCAA 60.485 50.000 0.00 0.00 0.00 2.57
1137 2754 1.070134 GCGGCAACCAGGAGTATATCA 59.930 52.381 0.00 0.00 0.00 2.15
1253 2941 1.996191 GAGAGCAACGATGAGACCAAC 59.004 52.381 0.00 0.00 0.00 3.77
1254 2942 1.402852 CGAGAGCAACGATGAGACCAA 60.403 52.381 0.00 0.00 0.00 3.67
1255 2943 0.171231 CGAGAGCAACGATGAGACCA 59.829 55.000 0.00 0.00 0.00 4.02
1256 2944 2.950877 CGAGAGCAACGATGAGACC 58.049 57.895 0.00 0.00 0.00 3.85
1965 10637 3.589988 TGATTTCTTCCTCTGCTTCGAC 58.410 45.455 0.00 0.00 0.00 4.20
2236 11032 5.490139 ACATCAGATCCAATGCTTTTACG 57.510 39.130 5.13 0.00 0.00 3.18
2311 11127 8.584157 TCACATCCAATGCTTTTACATAAAACT 58.416 29.630 0.00 0.00 32.31 2.66
2641 12384 8.887264 ATTAAATGTAGTAAACACCATTCCCA 57.113 30.769 0.00 0.00 42.09 4.37
2757 12508 7.335924 TGAAGCTGTGTACTAGTTTGAAACTTT 59.664 33.333 16.49 6.51 42.81 2.66
2864 13436 2.286654 GCGAAAAGCTGCAGATGATACC 60.287 50.000 20.43 0.00 44.04 2.73
3057 13630 6.515272 ACAAGTGACAACAAGAAACAAGAT 57.485 33.333 0.00 0.00 0.00 2.40
3121 13696 8.522542 AGTTGATCGTACTATCTTTCTAACCT 57.477 34.615 8.66 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.