Multiple sequence alignment - TraesCS7D01G424500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G424500 chr7D 100.000 3913 0 0 1 3913 544999947 544996035 0.000000e+00 7227.0
1 TraesCS7D01G424500 chr7D 90.909 275 24 1 620 893 125335104 125334830 6.180000e-98 368.0
2 TraesCS7D01G424500 chr7D 81.897 116 17 4 1984 2097 461091957 461092070 1.160000e-15 95.3
3 TraesCS7D01G424500 chr7D 84.884 86 5 6 129 207 545176261 545176177 3.240000e-11 80.5
4 TraesCS7D01G424500 chr7A 91.178 1553 82 28 898 2407 626886322 626884782 0.000000e+00 2058.0
5 TraesCS7D01G424500 chr7A 85.167 836 49 32 2876 3679 626884455 626883663 0.000000e+00 787.0
6 TraesCS7D01G424500 chr7A 92.082 341 15 5 2494 2833 626884786 626884457 1.650000e-128 470.0
7 TraesCS7D01G424500 chr7A 85.551 263 12 6 333 571 626886657 626886397 6.490000e-63 252.0
8 TraesCS7D01G424500 chr7A 83.556 225 10 6 3690 3913 626883683 626883485 6.680000e-43 185.0
9 TraesCS7D01G424500 chr7B 87.624 1406 75 47 1629 2995 588383511 588382166 0.000000e+00 1541.0
10 TraesCS7D01G424500 chr7B 90.879 603 25 10 3088 3670 588382144 588381552 0.000000e+00 782.0
11 TraesCS7D01G424500 chr7B 88.077 671 43 23 904 1551 588384650 588383994 0.000000e+00 761.0
12 TraesCS7D01G424500 chr7B 85.991 464 28 22 128 584 588385153 588384720 2.750000e-126 462.0
13 TraesCS7D01G424500 chr7B 89.686 223 9 2 3691 3913 588381563 588381355 4.980000e-69 272.0
14 TraesCS7D01G424500 chr7B 87.000 100 3 2 1 90 588385262 588385163 1.920000e-18 104.0
15 TraesCS7D01G424500 chr7B 81.897 116 17 4 1984 2097 483533501 483533614 1.160000e-15 95.3
16 TraesCS7D01G424500 chr4A 92.029 276 20 1 620 893 15128861 15128586 1.710000e-103 387.0
17 TraesCS7D01G424500 chr5A 91.636 275 22 1 620 893 584970161 584969887 2.850000e-101 379.0
18 TraesCS7D01G424500 chrUn 91.273 275 23 1 620 893 108701361 108701087 1.330000e-99 374.0
19 TraesCS7D01G424500 chr3D 90.747 281 25 1 618 897 505973687 505973407 1.330000e-99 374.0
20 TraesCS7D01G424500 chr3D 90.681 279 25 1 618 895 1327592 1327314 1.720000e-98 370.0
21 TraesCS7D01G424500 chr4B 90.909 275 24 1 620 893 673235253 673235527 6.180000e-98 368.0
22 TraesCS7D01G424500 chr4B 90.391 281 24 3 618 895 451550109 451549829 2.220000e-97 366.0
23 TraesCS7D01G424500 chr3A 90.647 278 25 1 620 896 385575342 385575065 6.180000e-98 368.0
24 TraesCS7D01G424500 chr2D 75.106 707 117 45 1309 1986 599791072 599790396 3.850000e-70 276.0
25 TraesCS7D01G424500 chr2D 92.086 139 11 0 1984 2122 599790258 599790120 3.080000e-46 196.0
26 TraesCS7D01G424500 chr2A 74.462 697 130 39 1309 1986 733518664 733517997 1.400000e-64 257.0
27 TraesCS7D01G424500 chr2A 89.209 139 15 0 1984 2122 733517886 733517748 1.450000e-39 174.0
28 TraesCS7D01G424500 chr2B 82.171 258 40 6 1309 1563 729136366 729136112 2.370000e-52 217.0
29 TraesCS7D01G424500 chr2B 90.647 139 13 0 1984 2122 729135555 729135417 6.680000e-43 185.0
30 TraesCS7D01G424500 chr6B 96.552 58 1 1 3746 3803 712054395 712054339 1.160000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G424500 chr7D 544996035 544999947 3912 True 7227.000000 7227 100.0000 1 3913 1 chr7D.!!$R2 3912
1 TraesCS7D01G424500 chr7A 626883485 626886657 3172 True 750.400000 2058 87.5068 333 3913 5 chr7A.!!$R1 3580
2 TraesCS7D01G424500 chr7B 588381355 588385262 3907 True 653.666667 1541 88.2095 1 3913 6 chr7B.!!$R1 3912
3 TraesCS7D01G424500 chr2D 599790120 599791072 952 True 236.000000 276 83.5960 1309 2122 2 chr2D.!!$R1 813
4 TraesCS7D01G424500 chr2A 733517748 733518664 916 True 215.500000 257 81.8355 1309 2122 2 chr2A.!!$R1 813
5 TraesCS7D01G424500 chr2B 729135417 729136366 949 True 201.000000 217 86.4090 1309 2122 2 chr2B.!!$R1 813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 1063 0.178958 ACACCACTTCGTCTCCCTCT 60.179 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2913 3682 0.178961 GGGGAGGTTTCACTTGCCTT 60.179 55.0 0.0 0.0 35.98 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.281656 GAACAAAACGGGCCGTCAG 59.718 57.895 34.23 25.49 39.99 3.51
100 111 4.838486 CGTGAGCTCGCTCCGGTC 62.838 72.222 24.01 4.06 42.09 4.79
101 112 3.749064 GTGAGCTCGCTCCGGTCA 61.749 66.667 20.07 0.00 42.09 4.02
102 113 3.749064 TGAGCTCGCTCCGGTCAC 61.749 66.667 15.65 0.00 42.09 3.67
103 114 3.749064 GAGCTCGCTCCGGTCACA 61.749 66.667 7.68 0.00 37.11 3.58
104 115 3.973267 GAGCTCGCTCCGGTCACAC 62.973 68.421 7.68 0.00 37.11 3.82
105 116 4.357947 GCTCGCTCCGGTCACACA 62.358 66.667 0.00 0.00 0.00 3.72
106 117 2.126307 CTCGCTCCGGTCACACAG 60.126 66.667 0.00 0.00 0.00 3.66
107 118 2.596338 TCGCTCCGGTCACACAGA 60.596 61.111 0.00 0.00 0.00 3.41
108 119 2.430921 CGCTCCGGTCACACAGAC 60.431 66.667 0.00 0.00 46.83 3.51
109 120 2.920645 CGCTCCGGTCACACAGACT 61.921 63.158 0.00 0.00 46.72 3.24
115 126 3.595691 GGTCACACAGACTGACAGG 57.404 57.895 10.08 0.00 46.72 4.00
116 127 0.601311 GGTCACACAGACTGACAGGC 60.601 60.000 10.08 3.10 46.72 4.85
117 128 0.941463 GTCACACAGACTGACAGGCG 60.941 60.000 10.08 3.02 44.09 5.52
118 129 2.029666 ACACAGACTGACAGGCGC 59.970 61.111 10.08 0.00 0.00 6.53
119 130 3.108289 CACAGACTGACAGGCGCG 61.108 66.667 10.08 0.00 0.00 6.86
139 150 1.300620 GCCAACGGCCAACCTTTTC 60.301 57.895 2.24 0.00 44.06 2.29
140 151 1.744320 GCCAACGGCCAACCTTTTCT 61.744 55.000 2.24 0.00 44.06 2.52
141 152 0.313987 CCAACGGCCAACCTTTTCTC 59.686 55.000 2.24 0.00 0.00 2.87
142 153 0.313987 CAACGGCCAACCTTTTCTCC 59.686 55.000 2.24 0.00 0.00 3.71
143 154 1.170290 AACGGCCAACCTTTTCTCCG 61.170 55.000 2.24 0.00 42.24 4.63
144 155 1.599797 CGGCCAACCTTTTCTCCGT 60.600 57.895 2.24 0.00 32.93 4.69
146 157 1.574702 GGCCAACCTTTTCTCCGTCG 61.575 60.000 0.00 0.00 0.00 5.12
147 158 0.601841 GCCAACCTTTTCTCCGTCGA 60.602 55.000 0.00 0.00 0.00 4.20
148 159 1.429463 CCAACCTTTTCTCCGTCGAG 58.571 55.000 0.00 0.00 37.48 4.04
149 160 0.790814 CAACCTTTTCTCCGTCGAGC 59.209 55.000 0.00 0.00 35.94 5.03
150 161 0.680061 AACCTTTTCTCCGTCGAGCT 59.320 50.000 0.00 0.00 35.94 4.09
207 221 2.124011 ACGCAGTTTGACAAATGCAG 57.876 45.000 23.13 19.31 37.78 4.41
208 222 0.780002 CGCAGTTTGACAAATGCAGC 59.220 50.000 23.13 15.72 38.60 5.25
209 223 0.780002 GCAGTTTGACAAATGCAGCG 59.220 50.000 20.75 4.60 38.54 5.18
210 224 1.411394 CAGTTTGACAAATGCAGCGG 58.589 50.000 3.49 0.00 0.00 5.52
226 240 3.077556 GGGCGGAAGAGCTCTCCA 61.078 66.667 18.55 0.00 34.10 3.86
235 249 3.006752 GGAAGAGCTCTCCATACCATCAG 59.993 52.174 18.55 0.00 0.00 2.90
262 276 3.815809 TCGTTGTCCACTCCATCTTTTT 58.184 40.909 0.00 0.00 0.00 1.94
291 305 3.267118 GACGCCCGTTTATCGCCC 61.267 66.667 0.00 0.00 38.35 6.13
357 371 4.492160 TAACGCGGCGGCAGAGAG 62.492 66.667 27.37 1.81 39.92 3.20
361 375 3.910490 GCGGCGGCAGAGAGAGAT 61.910 66.667 9.78 0.00 39.62 2.75
364 378 1.288752 GGCGGCAGAGAGAGATAGC 59.711 63.158 3.07 0.00 0.00 2.97
365 379 1.459455 GGCGGCAGAGAGAGATAGCA 61.459 60.000 3.07 0.00 0.00 3.49
374 396 3.392285 AGAGAGAGATAGCAGAGCAGAGA 59.608 47.826 0.00 0.00 0.00 3.10
416 438 2.391389 CGCAACGCTTCCTTCCCTC 61.391 63.158 0.00 0.00 0.00 4.30
445 472 0.607489 CAACTGCTACTGCCTTGCCT 60.607 55.000 0.00 0.00 38.71 4.75
507 534 2.590007 CCCATAGCCACGCTCAGC 60.590 66.667 0.00 0.00 40.44 4.26
508 535 2.590007 CCATAGCCACGCTCAGCC 60.590 66.667 0.00 0.00 40.44 4.85
509 536 2.187685 CATAGCCACGCTCAGCCA 59.812 61.111 0.00 0.00 40.44 4.75
528 555 3.738246 CACTGCTGCTGCTGCTGG 61.738 66.667 30.69 24.00 41.07 4.85
624 690 2.571757 CCTGTCGCGTTCAGGCTA 59.428 61.111 28.44 0.00 44.46 3.93
625 691 1.517257 CCTGTCGCGTTCAGGCTAG 60.517 63.158 28.44 13.50 44.46 3.42
626 692 2.126071 TGTCGCGTTCAGGCTAGC 60.126 61.111 6.04 6.04 0.00 3.42
631 697 2.802683 GCGTTCAGGCTAGCGATAG 58.197 57.895 9.00 2.61 0.00 2.08
646 712 3.655276 CGATAGCGGGGTAACATAACT 57.345 47.619 0.00 0.00 39.74 2.24
647 713 4.771590 CGATAGCGGGGTAACATAACTA 57.228 45.455 0.00 0.00 39.74 2.24
648 714 4.730657 CGATAGCGGGGTAACATAACTAG 58.269 47.826 0.00 0.00 39.74 2.57
649 715 4.217118 CGATAGCGGGGTAACATAACTAGT 59.783 45.833 0.00 0.00 39.74 2.57
650 716 5.412594 CGATAGCGGGGTAACATAACTAGTA 59.587 44.000 0.00 0.00 39.74 1.82
651 717 6.094603 CGATAGCGGGGTAACATAACTAGTAT 59.905 42.308 0.00 0.00 39.74 2.12
652 718 5.718724 AGCGGGGTAACATAACTAGTATC 57.281 43.478 0.00 0.00 39.74 2.24
653 719 5.142639 AGCGGGGTAACATAACTAGTATCA 58.857 41.667 0.00 0.00 39.74 2.15
654 720 5.778750 AGCGGGGTAACATAACTAGTATCAT 59.221 40.000 0.00 0.00 39.74 2.45
655 721 6.950041 AGCGGGGTAACATAACTAGTATCATA 59.050 38.462 0.00 0.00 39.74 2.15
656 722 7.618512 AGCGGGGTAACATAACTAGTATCATAT 59.381 37.037 0.00 0.00 39.74 1.78
657 723 8.906867 GCGGGGTAACATAACTAGTATCATATA 58.093 37.037 0.00 0.00 39.74 0.86
689 755 4.735662 GTAAACATGTTTACGTGGCAGA 57.264 40.909 33.98 12.00 43.42 4.26
690 756 5.098218 GTAAACATGTTTACGTGGCAGAA 57.902 39.130 33.98 11.36 43.42 3.02
691 757 4.640789 AAACATGTTTACGTGGCAGAAA 57.359 36.364 22.10 0.00 37.19 2.52
692 758 4.640789 AACATGTTTACGTGGCAGAAAA 57.359 36.364 4.92 0.00 37.19 2.29
693 759 4.846779 ACATGTTTACGTGGCAGAAAAT 57.153 36.364 0.00 0.00 37.19 1.82
694 760 5.195001 ACATGTTTACGTGGCAGAAAATT 57.805 34.783 0.00 0.00 37.19 1.82
695 761 6.320494 ACATGTTTACGTGGCAGAAAATTA 57.680 33.333 0.00 0.00 37.19 1.40
696 762 6.740110 ACATGTTTACGTGGCAGAAAATTAA 58.260 32.000 0.00 0.00 37.19 1.40
697 763 7.203910 ACATGTTTACGTGGCAGAAAATTAAA 58.796 30.769 0.00 0.00 37.19 1.52
698 764 7.381139 ACATGTTTACGTGGCAGAAAATTAAAG 59.619 33.333 0.00 0.00 37.19 1.85
699 765 7.028926 TGTTTACGTGGCAGAAAATTAAAGA 57.971 32.000 0.00 0.00 0.00 2.52
700 766 7.481642 TGTTTACGTGGCAGAAAATTAAAGAA 58.518 30.769 0.00 0.00 0.00 2.52
701 767 7.974501 TGTTTACGTGGCAGAAAATTAAAGAAA 59.025 29.630 0.00 0.00 0.00 2.52
702 768 8.809478 GTTTACGTGGCAGAAAATTAAAGAAAA 58.191 29.630 0.00 0.00 0.00 2.29
703 769 8.568732 TTACGTGGCAGAAAATTAAAGAAAAG 57.431 30.769 0.00 0.00 0.00 2.27
704 770 6.801575 ACGTGGCAGAAAATTAAAGAAAAGA 58.198 32.000 0.00 0.00 0.00 2.52
705 771 6.918022 ACGTGGCAGAAAATTAAAGAAAAGAG 59.082 34.615 0.00 0.00 0.00 2.85
706 772 7.138736 CGTGGCAGAAAATTAAAGAAAAGAGA 58.861 34.615 0.00 0.00 0.00 3.10
707 773 7.324616 CGTGGCAGAAAATTAAAGAAAAGAGAG 59.675 37.037 0.00 0.00 0.00 3.20
708 774 8.352942 GTGGCAGAAAATTAAAGAAAAGAGAGA 58.647 33.333 0.00 0.00 0.00 3.10
709 775 8.571336 TGGCAGAAAATTAAAGAAAAGAGAGAG 58.429 33.333 0.00 0.00 0.00 3.20
710 776 8.026026 GGCAGAAAATTAAAGAAAAGAGAGAGG 58.974 37.037 0.00 0.00 0.00 3.69
711 777 8.787852 GCAGAAAATTAAAGAAAAGAGAGAGGA 58.212 33.333 0.00 0.00 0.00 3.71
722 788 8.830915 AGAAAAGAGAGAGGATCATAGTAACA 57.169 34.615 0.00 0.00 37.82 2.41
723 789 9.432982 AGAAAAGAGAGAGGATCATAGTAACAT 57.567 33.333 0.00 0.00 37.82 2.71
770 836 9.154847 TGAATATTATGCTACTATGTGTCATGC 57.845 33.333 0.00 0.00 0.00 4.06
771 837 9.154847 GAATATTATGCTACTATGTGTCATGCA 57.845 33.333 0.00 0.00 35.34 3.96
772 838 9.676861 AATATTATGCTACTATGTGTCATGCAT 57.323 29.630 0.00 0.00 40.50 3.96
773 839 6.790285 TTATGCTACTATGTGTCATGCATG 57.210 37.500 21.07 21.07 39.07 4.06
774 840 3.469739 TGCTACTATGTGTCATGCATGG 58.530 45.455 25.97 10.76 0.00 3.66
775 841 2.225019 GCTACTATGTGTCATGCATGGC 59.775 50.000 24.40 24.40 0.00 4.40
776 842 2.423446 ACTATGTGTCATGCATGGCA 57.577 45.000 29.45 29.45 44.86 4.92
777 843 2.725637 ACTATGTGTCATGCATGGCAA 58.274 42.857 34.01 23.37 44.94 4.52
778 844 3.293337 ACTATGTGTCATGCATGGCAAT 58.707 40.909 34.01 27.34 44.94 3.56
779 845 4.463070 ACTATGTGTCATGCATGGCAATA 58.537 39.130 34.01 27.05 44.94 1.90
780 846 4.888823 ACTATGTGTCATGCATGGCAATAA 59.111 37.500 34.01 22.53 44.94 1.40
781 847 4.739587 ATGTGTCATGCATGGCAATAAA 57.260 36.364 34.01 20.14 44.94 1.40
782 848 4.739587 TGTGTCATGCATGGCAATAAAT 57.260 36.364 34.01 0.00 44.94 1.40
783 849 4.434520 TGTGTCATGCATGGCAATAAATG 58.565 39.130 34.01 2.58 44.94 2.32
784 850 4.159879 TGTGTCATGCATGGCAATAAATGA 59.840 37.500 34.01 7.61 44.94 2.57
785 851 4.743151 GTGTCATGCATGGCAATAAATGAG 59.257 41.667 34.01 0.13 44.94 2.90
786 852 4.645588 TGTCATGCATGGCAATAAATGAGA 59.354 37.500 30.82 3.91 43.62 3.27
787 853 4.980434 GTCATGCATGGCAATAAATGAGAC 59.020 41.667 26.04 8.36 43.62 3.36
788 854 4.038282 TCATGCATGGCAATAAATGAGACC 59.962 41.667 25.97 0.00 43.62 3.85
789 855 3.363627 TGCATGGCAATAAATGAGACCA 58.636 40.909 0.00 0.00 34.76 4.02
790 856 3.962063 TGCATGGCAATAAATGAGACCAT 59.038 39.130 0.00 0.00 38.42 3.55
791 857 4.038282 TGCATGGCAATAAATGAGACCATC 59.962 41.667 0.00 0.00 35.76 3.51
792 858 4.280174 GCATGGCAATAAATGAGACCATCT 59.720 41.667 0.00 0.00 35.76 2.90
793 859 5.474532 GCATGGCAATAAATGAGACCATCTA 59.525 40.000 0.00 0.00 35.76 1.98
794 860 6.152323 GCATGGCAATAAATGAGACCATCTAT 59.848 38.462 0.00 0.00 35.76 1.98
795 861 7.535997 CATGGCAATAAATGAGACCATCTATG 58.464 38.462 0.00 0.00 35.76 2.23
796 862 6.840527 TGGCAATAAATGAGACCATCTATGA 58.159 36.000 0.00 0.00 31.40 2.15
797 863 7.464273 TGGCAATAAATGAGACCATCTATGAT 58.536 34.615 0.00 0.00 31.40 2.45
798 864 8.605065 TGGCAATAAATGAGACCATCTATGATA 58.395 33.333 0.00 0.00 31.40 2.15
799 865 8.887717 GGCAATAAATGAGACCATCTATGATAC 58.112 37.037 0.00 0.00 31.40 2.24
800 866 9.664332 GCAATAAATGAGACCATCTATGATACT 57.336 33.333 0.00 0.00 31.40 2.12
835 901 9.700831 ATACTATGCACTATGGATGTAGTATCA 57.299 33.333 0.00 0.00 29.62 2.15
836 902 8.601047 ACTATGCACTATGGATGTAGTATCAT 57.399 34.615 0.00 0.00 33.29 2.45
837 903 9.700831 ACTATGCACTATGGATGTAGTATCATA 57.299 33.333 0.00 0.00 33.29 2.15
838 904 9.958234 CTATGCACTATGGATGTAGTATCATAC 57.042 37.037 0.00 0.00 33.29 2.39
839 905 7.775053 TGCACTATGGATGTAGTATCATACA 57.225 36.000 0.00 0.00 41.99 2.29
840 906 7.602753 TGCACTATGGATGTAGTATCATACAC 58.397 38.462 0.00 0.00 40.81 2.90
841 907 7.451566 TGCACTATGGATGTAGTATCATACACT 59.548 37.037 0.00 0.00 40.81 3.55
842 908 8.957466 GCACTATGGATGTAGTATCATACACTA 58.043 37.037 0.00 0.00 40.81 2.74
877 943 8.182227 TGCATGATACTACTATATGTTACTCGC 58.818 37.037 0.00 0.00 0.00 5.03
878 944 7.644551 GCATGATACTACTATATGTTACTCGCC 59.355 40.741 0.00 0.00 0.00 5.54
879 945 8.674607 CATGATACTACTATATGTTACTCGCCA 58.325 37.037 0.00 0.00 0.00 5.69
880 946 8.803397 TGATACTACTATATGTTACTCGCCAT 57.197 34.615 0.00 0.00 0.00 4.40
881 947 9.239551 TGATACTACTATATGTTACTCGCCATT 57.760 33.333 0.00 0.00 0.00 3.16
885 951 9.239551 ACTACTATATGTTACTCGCCATTATGA 57.760 33.333 0.00 0.00 0.00 2.15
886 952 9.504710 CTACTATATGTTACTCGCCATTATGAC 57.495 37.037 0.00 0.00 0.00 3.06
887 953 7.892609 ACTATATGTTACTCGCCATTATGACA 58.107 34.615 0.00 0.00 0.00 3.58
888 954 8.364894 ACTATATGTTACTCGCCATTATGACAA 58.635 33.333 0.00 0.00 0.00 3.18
889 955 5.991328 ATGTTACTCGCCATTATGACAAG 57.009 39.130 0.00 0.00 0.00 3.16
890 956 3.621268 TGTTACTCGCCATTATGACAAGC 59.379 43.478 0.00 0.00 0.00 4.01
891 957 1.668419 ACTCGCCATTATGACAAGCC 58.332 50.000 0.00 0.00 0.00 4.35
961 1040 2.511452 CCCGATCCCCTAGCCACTG 61.511 68.421 0.00 0.00 0.00 3.66
984 1063 0.178958 ACACCACTTCGTCTCCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
985 1064 0.528470 CACCACTTCGTCTCCCTCTC 59.472 60.000 0.00 0.00 0.00 3.20
986 1065 0.406361 ACCACTTCGTCTCCCTCTCT 59.594 55.000 0.00 0.00 0.00 3.10
987 1066 1.634459 ACCACTTCGTCTCCCTCTCTA 59.366 52.381 0.00 0.00 0.00 2.43
988 1067 2.294074 CCACTTCGTCTCCCTCTCTAG 58.706 57.143 0.00 0.00 0.00 2.43
991 1070 0.464013 TTCGTCTCCCTCTCTAGCCG 60.464 60.000 0.00 0.00 0.00 5.52
992 1071 1.146485 CGTCTCCCTCTCTAGCCGA 59.854 63.158 0.00 0.00 0.00 5.54
993 1072 0.882927 CGTCTCCCTCTCTAGCCGAG 60.883 65.000 2.82 2.82 41.30 4.63
994 1073 0.470766 GTCTCCCTCTCTAGCCGAGA 59.529 60.000 9.62 3.59 46.32 4.04
996 1075 0.536460 CTCCCTCTCTAGCCGAGACC 60.536 65.000 9.62 0.00 43.72 3.85
998 1077 1.894756 CCTCTCTAGCCGAGACCCG 60.895 68.421 9.62 0.00 43.72 5.28
999 1078 1.146485 CTCTCTAGCCGAGACCCGA 59.854 63.158 0.00 0.00 43.72 5.14
1000 1079 0.882927 CTCTCTAGCCGAGACCCGAG 60.883 65.000 0.00 0.00 43.72 4.63
1006 1096 2.675423 CCGAGACCCGAGACACCA 60.675 66.667 0.00 0.00 41.76 4.17
1010 1100 1.939769 GAGACCCGAGACACCAGAGC 61.940 65.000 0.00 0.00 0.00 4.09
1011 1101 2.203640 ACCCGAGACACCAGAGCA 60.204 61.111 0.00 0.00 0.00 4.26
1013 1103 2.262915 CCGAGACACCAGAGCACC 59.737 66.667 0.00 0.00 0.00 5.01
1201 1299 3.834799 CCCCCGACGTAGAGCACC 61.835 72.222 0.00 0.00 0.00 5.01
1203 1301 4.189188 CCCGACGTAGAGCACCCG 62.189 72.222 0.00 0.00 0.00 5.28
1579 1680 3.864686 GTACGCGCGTCCTCCGTA 61.865 66.667 41.35 18.15 39.32 4.02
1613 2138 7.718272 AATGTCAACAATGTTTCTTGAATGG 57.282 32.000 0.00 0.00 0.00 3.16
1615 2140 7.053316 TGTCAACAATGTTTCTTGAATGGAT 57.947 32.000 0.00 0.00 0.00 3.41
1623 2148 3.433306 TTCTTGAATGGATCGTGGGTT 57.567 42.857 0.00 0.00 0.00 4.11
1765 2291 4.545706 GGCGGCGGATCATCCACA 62.546 66.667 9.78 0.00 35.91 4.17
1812 2338 4.052229 ACCGACGACTTCCAGCCG 62.052 66.667 0.00 0.00 0.00 5.52
1828 2354 2.126307 CGCAGGTCAGTCACTCGG 60.126 66.667 0.00 0.00 0.00 4.63
1829 2355 2.920645 CGCAGGTCAGTCACTCGGT 61.921 63.158 0.00 0.00 0.00 4.69
1862 2403 2.261037 GATCGATCGATCCTCTGCTG 57.739 55.000 36.97 3.96 43.71 4.41
1894 2450 0.445436 CCTGACGCATGCAGAGAAAC 59.555 55.000 19.57 1.00 35.39 2.78
1897 2453 0.790207 GACGCATGCAGAGAAACGAA 59.210 50.000 19.57 0.00 0.00 3.85
1898 2454 0.512952 ACGCATGCAGAGAAACGAAC 59.487 50.000 19.57 0.00 0.00 3.95
2409 3145 3.491104 CCATGACCGAGGTAAGCTTACTC 60.491 52.174 30.36 23.68 34.16 2.59
2414 3150 2.481449 CCGAGGTAAGCTTACTCGCAAT 60.481 50.000 31.36 17.20 35.24 3.56
2416 3152 3.243177 CGAGGTAAGCTTACTCGCAATTC 59.757 47.826 30.36 14.80 32.27 2.17
2418 3154 4.833390 AGGTAAGCTTACTCGCAATTCTT 58.167 39.130 30.36 0.68 34.16 2.52
2419 3155 4.631813 AGGTAAGCTTACTCGCAATTCTTG 59.368 41.667 30.36 0.00 34.16 3.02
2420 3156 4.392138 GGTAAGCTTACTCGCAATTCTTGT 59.608 41.667 30.36 0.00 34.16 3.16
2421 3157 4.670227 AAGCTTACTCGCAATTCTTGTC 57.330 40.909 0.00 0.00 0.00 3.18
2422 3158 3.003480 AGCTTACTCGCAATTCTTGTCC 58.997 45.455 0.00 0.00 0.00 4.02
2428 3172 0.453282 CGCAATTCTTGTCCTGCACG 60.453 55.000 0.00 0.00 34.39 5.34
2429 3173 0.874390 GCAATTCTTGTCCTGCACGA 59.126 50.000 0.00 0.00 34.87 4.35
2456 3222 1.114627 TGGCTAGCACATGTCTCGAT 58.885 50.000 18.24 0.00 0.00 3.59
2507 3273 0.109504 TCGTTGCTTAATTTGCGGGC 60.110 50.000 0.00 0.00 0.00 6.13
2508 3274 0.387878 CGTTGCTTAATTTGCGGGCA 60.388 50.000 0.00 0.00 0.00 5.36
2509 3275 1.789506 GTTGCTTAATTTGCGGGCAA 58.210 45.000 1.21 1.21 39.99 4.52
2524 3293 2.545731 GGGCAAAACAACGTTGACAAT 58.454 42.857 33.66 14.02 35.56 2.71
2543 3312 4.856487 ACAATTTGAAAATGTATGCGACGG 59.144 37.500 2.79 0.00 0.00 4.79
2554 3323 4.485163 TGTATGCGACGGATAATCTGATG 58.515 43.478 10.84 0.00 0.00 3.07
2583 3352 1.163420 TGCATTGCGACGAACAGGTT 61.163 50.000 0.00 0.00 0.00 3.50
2706 3475 4.018796 GACGACGACGACGAAGAC 57.981 61.111 25.15 10.08 42.66 3.01
2780 3549 1.134098 GCACAGGCCAGGCTAAGATTA 60.134 52.381 12.43 0.00 0.00 1.75
2781 3550 2.487986 GCACAGGCCAGGCTAAGATTAT 60.488 50.000 12.43 0.00 0.00 1.28
2833 3602 4.608514 TCCTTCCCACCTGCCCCA 62.609 66.667 0.00 0.00 0.00 4.96
2855 3624 4.434354 GCCGGGCCCCACATTGTA 62.434 66.667 18.66 0.00 0.00 2.41
2856 3625 2.357056 CCGGGCCCCACATTGTAA 59.643 61.111 18.66 0.00 0.00 2.41
2857 3626 1.304547 CCGGGCCCCACATTGTAAA 60.305 57.895 18.66 0.00 0.00 2.01
2858 3627 0.686112 CCGGGCCCCACATTGTAAAT 60.686 55.000 18.66 0.00 0.00 1.40
2859 3628 0.459489 CGGGCCCCACATTGTAAATG 59.541 55.000 18.66 0.00 0.00 2.32
2860 3629 1.859302 GGGCCCCACATTGTAAATGA 58.141 50.000 12.23 0.00 0.00 2.57
2861 3630 1.480545 GGGCCCCACATTGTAAATGAC 59.519 52.381 12.23 0.00 0.00 3.06
2862 3631 2.175202 GGCCCCACATTGTAAATGACA 58.825 47.619 6.96 0.00 35.78 3.58
2863 3632 2.094234 GGCCCCACATTGTAAATGACAC 60.094 50.000 6.96 0.00 37.96 3.67
2864 3633 2.094234 GCCCCACATTGTAAATGACACC 60.094 50.000 6.96 0.00 37.96 4.16
2865 3634 3.161067 CCCCACATTGTAAATGACACCA 58.839 45.455 6.96 0.00 37.96 4.17
2866 3635 3.056891 CCCCACATTGTAAATGACACCAC 60.057 47.826 6.96 0.00 37.96 4.16
2913 3682 8.684386 TTGTGAATACAAAGGTTATCTGTGAA 57.316 30.769 0.00 0.00 43.47 3.18
2922 3691 4.074970 AGGTTATCTGTGAAAGGCAAGTG 58.925 43.478 0.00 0.00 0.00 3.16
2926 3695 4.574599 ATCTGTGAAAGGCAAGTGAAAC 57.425 40.909 0.00 0.00 0.00 2.78
2928 3697 2.689983 CTGTGAAAGGCAAGTGAAACCT 59.310 45.455 0.00 0.00 37.80 3.50
2929 3698 2.687935 TGTGAAAGGCAAGTGAAACCTC 59.312 45.455 0.00 0.00 37.80 3.85
2934 3703 1.971695 GCAAGTGAAACCTCCCCCG 60.972 63.158 0.00 0.00 37.80 5.73
2935 3704 1.454539 CAAGTGAAACCTCCCCCGT 59.545 57.895 0.00 0.00 37.80 5.28
2936 3705 0.889186 CAAGTGAAACCTCCCCCGTG 60.889 60.000 0.00 0.00 37.80 4.94
2937 3706 1.350310 AAGTGAAACCTCCCCCGTGT 61.350 55.000 0.00 0.00 37.80 4.49
2938 3707 1.599797 GTGAAACCTCCCCCGTGTG 60.600 63.158 0.00 0.00 0.00 3.82
2939 3708 2.073716 TGAAACCTCCCCCGTGTGT 61.074 57.895 0.00 0.00 0.00 3.72
2940 3709 1.302271 GAAACCTCCCCCGTGTGTC 60.302 63.158 0.00 0.00 0.00 3.67
2941 3710 3.173167 AAACCTCCCCCGTGTGTCG 62.173 63.158 0.00 0.00 39.52 4.35
2942 3711 4.608774 ACCTCCCCCGTGTGTCGA 62.609 66.667 0.00 0.00 42.86 4.20
2944 3713 4.415332 CTCCCCCGTGTGTCGACG 62.415 72.222 11.62 0.00 42.86 5.12
2950 3719 2.257371 CGTGTGTCGACGGACCAT 59.743 61.111 11.62 0.00 42.73 3.55
2958 3727 1.800315 CGACGGACCATGACACGAC 60.800 63.158 9.30 3.43 0.00 4.34
2959 3728 1.800315 GACGGACCATGACACGACG 60.800 63.158 9.30 0.00 0.00 5.12
2960 3729 2.191354 GACGGACCATGACACGACGA 62.191 60.000 0.00 0.00 0.00 4.20
3003 3775 2.373540 TACGTAATGCAAAGCGGACT 57.626 45.000 10.89 0.00 0.00 3.85
3021 3793 1.515521 CTGAGGGTTTTGTCGGGCAC 61.516 60.000 0.00 0.00 0.00 5.01
3024 3796 4.337060 GGTTTTGTCGGGCACGGC 62.337 66.667 5.70 5.70 46.87 5.68
3058 3830 4.988716 ACCGACCGACCTGCCTGA 62.989 66.667 0.00 0.00 0.00 3.86
3059 3831 4.436998 CCGACCGACCTGCCTGAC 62.437 72.222 0.00 0.00 0.00 3.51
3060 3832 4.436998 CGACCGACCTGCCTGACC 62.437 72.222 0.00 0.00 0.00 4.02
3061 3833 2.997897 GACCGACCTGCCTGACCT 60.998 66.667 0.00 0.00 0.00 3.85
3062 3834 1.681327 GACCGACCTGCCTGACCTA 60.681 63.158 0.00 0.00 0.00 3.08
3063 3835 1.946475 GACCGACCTGCCTGACCTAC 61.946 65.000 0.00 0.00 0.00 3.18
3064 3836 2.722201 CCGACCTGCCTGACCTACC 61.722 68.421 0.00 0.00 0.00 3.18
3065 3837 1.982395 CGACCTGCCTGACCTACCA 60.982 63.158 0.00 0.00 0.00 3.25
3066 3838 1.541310 CGACCTGCCTGACCTACCAA 61.541 60.000 0.00 0.00 0.00 3.67
3067 3839 0.250513 GACCTGCCTGACCTACCAAG 59.749 60.000 0.00 0.00 0.00 3.61
3068 3840 0.178903 ACCTGCCTGACCTACCAAGA 60.179 55.000 0.00 0.00 0.00 3.02
3069 3841 0.539051 CCTGCCTGACCTACCAAGAG 59.461 60.000 0.00 0.00 0.00 2.85
3070 3842 1.270907 CTGCCTGACCTACCAAGAGT 58.729 55.000 0.00 0.00 0.00 3.24
3071 3843 2.457598 CTGCCTGACCTACCAAGAGTA 58.542 52.381 0.00 0.00 0.00 2.59
3072 3844 2.428890 CTGCCTGACCTACCAAGAGTAG 59.571 54.545 0.00 0.00 46.99 2.57
3073 3845 2.225293 TGCCTGACCTACCAAGAGTAGT 60.225 50.000 0.00 0.00 46.15 2.73
3074 3846 3.010920 TGCCTGACCTACCAAGAGTAGTA 59.989 47.826 0.00 0.00 46.15 1.82
3075 3847 3.380954 GCCTGACCTACCAAGAGTAGTAC 59.619 52.174 0.00 0.00 46.15 2.73
3076 3848 4.857679 CCTGACCTACCAAGAGTAGTACT 58.142 47.826 1.37 1.37 46.15 2.73
3077 3849 5.631009 GCCTGACCTACCAAGAGTAGTACTA 60.631 48.000 1.88 0.00 46.15 1.82
3078 3850 5.821995 CCTGACCTACCAAGAGTAGTACTAC 59.178 48.000 23.03 23.03 46.15 2.73
3079 3851 5.749462 TGACCTACCAAGAGTAGTACTACC 58.251 45.833 25.97 18.10 46.15 3.18
3080 3852 5.490357 TGACCTACCAAGAGTAGTACTACCT 59.510 44.000 25.97 19.75 46.15 3.08
3081 3853 5.753716 ACCTACCAAGAGTAGTACTACCTG 58.246 45.833 25.97 20.07 46.15 4.00
3082 3854 5.131784 CCTACCAAGAGTAGTACTACCTGG 58.868 50.000 28.43 28.43 46.15 4.45
3083 3855 3.363627 ACCAAGAGTAGTACTACCTGGC 58.636 50.000 29.25 18.60 35.70 4.85
3084 3856 3.011482 ACCAAGAGTAGTACTACCTGGCT 59.989 47.826 29.25 19.95 35.70 4.75
3085 3857 3.381908 CCAAGAGTAGTACTACCTGGCTG 59.618 52.174 25.97 17.07 36.75 4.85
3086 3858 3.300239 AGAGTAGTACTACCTGGCTGG 57.700 52.381 25.97 9.11 42.93 4.85
3087 3859 1.682323 GAGTAGTACTACCTGGCTGGC 59.318 57.143 25.97 1.72 40.22 4.85
3088 3860 1.288335 AGTAGTACTACCTGGCTGGCT 59.712 52.381 25.97 4.81 40.22 4.75
3089 3861 1.409427 GTAGTACTACCTGGCTGGCTG 59.591 57.143 20.47 6.05 40.22 4.85
3090 3862 0.978146 AGTACTACCTGGCTGGCTGG 60.978 60.000 22.70 22.70 40.22 4.85
3091 3863 2.367202 TACTACCTGGCTGGCTGGC 61.367 63.158 23.92 11.09 40.22 4.85
3092 3864 2.822643 TACTACCTGGCTGGCTGGCT 62.823 60.000 23.92 14.70 42.34 4.75
3093 3865 3.694058 CTACCTGGCTGGCTGGCTG 62.694 68.421 23.92 16.89 42.34 4.85
3113 3915 2.358984 CCGGTTGGGTTGGGTACG 60.359 66.667 0.00 0.00 0.00 3.67
3179 3981 0.094730 GTGTACGTGCCGCTTTCATC 59.905 55.000 0.00 0.00 0.00 2.92
3180 3982 1.343821 GTACGTGCCGCTTTCATCG 59.656 57.895 0.00 0.00 0.00 3.84
3185 3987 2.102438 TGCCGCTTTCATCGCTCTG 61.102 57.895 0.00 0.00 0.00 3.35
3188 3990 1.150567 CCGCTTTCATCGCTCTGGAG 61.151 60.000 0.00 0.00 0.00 3.86
3189 3991 0.179127 CGCTTTCATCGCTCTGGAGA 60.179 55.000 1.35 0.00 0.00 3.71
3190 3992 1.737029 CGCTTTCATCGCTCTGGAGAA 60.737 52.381 1.35 0.00 0.00 2.87
3191 3993 1.932511 GCTTTCATCGCTCTGGAGAAG 59.067 52.381 1.35 0.00 0.00 2.85
3192 3994 2.676463 GCTTTCATCGCTCTGGAGAAGT 60.676 50.000 1.35 0.00 0.00 3.01
3333 4149 1.762957 CTCCTCATAAAAGGCGAGGGA 59.237 52.381 4.92 0.00 45.40 4.20
3454 4282 9.231297 ACAACTTGCTTATCAGTAACATGTATT 57.769 29.630 0.00 0.00 0.00 1.89
3485 4313 4.572985 TTGGTTGACAAGCAATCTCTTG 57.427 40.909 24.90 2.33 43.27 3.02
3642 4474 2.125753 GCGTGCTCCTCACTCCTG 60.126 66.667 0.00 0.00 43.46 3.86
3658 4490 0.107017 CCTGAATACTGGCCAGGTGG 60.107 60.000 35.42 21.81 41.81 4.61
3659 4491 0.620556 CTGAATACTGGCCAGGTGGT 59.379 55.000 35.42 18.69 37.57 4.16
3660 4492 1.837439 CTGAATACTGGCCAGGTGGTA 59.163 52.381 35.42 20.29 37.57 3.25
3661 4493 2.439507 CTGAATACTGGCCAGGTGGTAT 59.560 50.000 35.42 21.59 37.57 2.73
3662 4494 3.646162 CTGAATACTGGCCAGGTGGTATA 59.354 47.826 35.42 18.43 37.57 1.47
3663 4495 4.041464 TGAATACTGGCCAGGTGGTATAA 58.959 43.478 35.42 14.11 37.57 0.98
3664 4496 4.663120 TGAATACTGGCCAGGTGGTATAAT 59.337 41.667 35.42 14.48 37.57 1.28
3665 4497 5.847265 TGAATACTGGCCAGGTGGTATAATA 59.153 40.000 35.42 16.23 37.57 0.98
3666 4498 6.013725 TGAATACTGGCCAGGTGGTATAATAG 60.014 42.308 35.42 8.01 37.57 1.73
3667 4499 3.665443 ACTGGCCAGGTGGTATAATAGT 58.335 45.455 35.42 8.72 37.57 2.12
3668 4500 4.823107 ACTGGCCAGGTGGTATAATAGTA 58.177 43.478 35.42 0.00 37.57 1.82
3669 4501 4.838986 ACTGGCCAGGTGGTATAATAGTAG 59.161 45.833 35.42 6.41 37.57 2.57
3670 4502 4.164981 TGGCCAGGTGGTATAATAGTAGG 58.835 47.826 0.00 0.00 37.57 3.18
3671 4503 4.165760 GGCCAGGTGGTATAATAGTAGGT 58.834 47.826 0.00 0.00 37.57 3.08
3672 4504 4.020485 GGCCAGGTGGTATAATAGTAGGTG 60.020 50.000 0.00 0.00 37.57 4.00
3673 4505 4.591924 GCCAGGTGGTATAATAGTAGGTGT 59.408 45.833 0.00 0.00 37.57 4.16
3674 4506 5.071384 GCCAGGTGGTATAATAGTAGGTGTT 59.929 44.000 0.00 0.00 37.57 3.32
3675 4507 6.408891 GCCAGGTGGTATAATAGTAGGTGTTT 60.409 42.308 0.00 0.00 37.57 2.83
3676 4508 7.571025 CCAGGTGGTATAATAGTAGGTGTTTT 58.429 38.462 0.00 0.00 0.00 2.43
3677 4509 8.050930 CCAGGTGGTATAATAGTAGGTGTTTTT 58.949 37.037 0.00 0.00 0.00 1.94
3799 4632 1.308069 CCGCCAACACCATTCTGGAG 61.308 60.000 0.00 0.00 40.96 3.86
3800 4633 0.606401 CGCCAACACCATTCTGGAGT 60.606 55.000 0.00 0.00 43.22 3.85
3801 4634 1.168714 GCCAACACCATTCTGGAGTC 58.831 55.000 0.00 0.00 40.48 3.36
3802 4635 1.271597 GCCAACACCATTCTGGAGTCT 60.272 52.381 0.00 0.00 40.48 3.24
3803 4636 2.430465 CCAACACCATTCTGGAGTCTG 58.570 52.381 0.00 0.82 40.48 3.51
3804 4637 2.430465 CAACACCATTCTGGAGTCTGG 58.570 52.381 0.00 0.00 40.48 3.86
3805 4638 0.987294 ACACCATTCTGGAGTCTGGG 59.013 55.000 0.00 0.00 36.61 4.45
3806 4639 0.393537 CACCATTCTGGAGTCTGGGC 60.394 60.000 0.00 0.00 40.96 5.36
3807 4640 0.548682 ACCATTCTGGAGTCTGGGCT 60.549 55.000 0.00 0.00 40.96 5.19
3808 4641 0.107312 CCATTCTGGAGTCTGGGCTG 60.107 60.000 0.00 0.00 40.96 4.85
3809 4642 0.907486 CATTCTGGAGTCTGGGCTGA 59.093 55.000 0.00 0.00 0.00 4.26
3810 4643 1.134461 CATTCTGGAGTCTGGGCTGAG 60.134 57.143 0.00 0.00 0.00 3.35
3811 4644 1.548357 TTCTGGAGTCTGGGCTGAGC 61.548 60.000 0.00 0.00 0.00 4.26
3812 4645 1.988956 CTGGAGTCTGGGCTGAGCT 60.989 63.158 3.72 0.00 0.00 4.09
3889 4722 1.227527 CACCTGTTGCGACTGACCA 60.228 57.895 12.31 0.00 0.00 4.02
3890 4723 1.227556 ACCTGTTGCGACTGACCAC 60.228 57.895 12.31 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.990295 GTTTTGTTCGACGCTTCGGC 60.990 55.000 13.04 6.92 45.90 5.54
90 101 2.596338 TCTGTGTGACCGGAGCGA 60.596 61.111 9.46 0.00 0.00 4.93
92 103 1.373497 CAGTCTGTGTGACCGGAGC 60.373 63.158 9.46 0.00 46.46 4.70
95 106 0.319040 CTGTCAGTCTGTGTGACCGG 60.319 60.000 0.00 0.00 46.46 5.28
96 107 0.319040 CCTGTCAGTCTGTGTGACCG 60.319 60.000 0.00 4.12 46.46 4.79
97 108 0.601311 GCCTGTCAGTCTGTGTGACC 60.601 60.000 0.00 0.00 46.46 4.02
98 109 0.941463 CGCCTGTCAGTCTGTGTGAC 60.941 60.000 0.00 5.54 43.97 3.67
99 110 1.363807 CGCCTGTCAGTCTGTGTGA 59.636 57.895 0.00 0.00 0.00 3.58
100 111 2.313172 GCGCCTGTCAGTCTGTGTG 61.313 63.158 0.00 0.00 0.00 3.82
101 112 2.029666 GCGCCTGTCAGTCTGTGT 59.970 61.111 0.00 0.00 0.00 3.72
102 113 3.108289 CGCGCCTGTCAGTCTGTG 61.108 66.667 0.00 0.00 0.00 3.66
122 133 0.313987 GAGAAAAGGTTGGCCGTTGG 59.686 55.000 0.00 0.00 36.60 3.77
123 134 0.313987 GGAGAAAAGGTTGGCCGTTG 59.686 55.000 0.00 0.00 36.60 4.10
124 135 1.170290 CGGAGAAAAGGTTGGCCGTT 61.170 55.000 0.00 0.00 40.50 4.44
125 136 1.599797 CGGAGAAAAGGTTGGCCGT 60.600 57.895 0.00 0.00 40.50 5.68
126 137 1.574702 GACGGAGAAAAGGTTGGCCG 61.575 60.000 0.00 0.00 43.95 6.13
164 178 4.547905 CGATCGCCCGTACGTGCT 62.548 66.667 20.19 2.46 0.00 4.40
194 208 1.006337 GCCCGCTGCATTTGTCAAA 60.006 52.632 0.00 0.00 40.77 2.69
207 221 4.882396 GAGAGCTCTTCCGCCCGC 62.882 72.222 19.36 0.00 0.00 6.13
208 222 4.214327 GGAGAGCTCTTCCGCCCG 62.214 72.222 19.36 0.00 0.00 6.13
209 223 1.115930 TATGGAGAGCTCTTCCGCCC 61.116 60.000 19.74 14.85 0.00 6.13
210 224 0.032815 GTATGGAGAGCTCTTCCGCC 59.967 60.000 19.74 15.23 0.00 6.13
226 240 0.106708 AACGATGCGGCTGATGGTAT 59.893 50.000 0.00 0.00 0.00 2.73
235 249 2.740714 GAGTGGACAACGATGCGGC 61.741 63.158 0.00 0.00 0.00 6.53
291 305 4.170062 TCTTACCGCCGCGTCGAG 62.170 66.667 12.69 3.43 0.00 4.04
305 319 2.295885 CGTACCCCTATGTCTCGTCTT 58.704 52.381 0.00 0.00 0.00 3.01
354 368 3.480470 GTCTCTGCTCTGCTATCTCTCT 58.520 50.000 0.00 0.00 0.00 3.10
355 369 2.554032 GGTCTCTGCTCTGCTATCTCTC 59.446 54.545 0.00 0.00 0.00 3.20
357 371 1.613437 GGGTCTCTGCTCTGCTATCTC 59.387 57.143 0.00 0.00 0.00 2.75
361 375 1.479709 GAAGGGTCTCTGCTCTGCTA 58.520 55.000 0.00 0.00 0.00 3.49
364 378 0.617249 AGGGAAGGGTCTCTGCTCTG 60.617 60.000 0.00 0.00 31.32 3.35
365 379 0.118144 AAGGGAAGGGTCTCTGCTCT 59.882 55.000 0.00 0.00 33.59 4.09
374 396 2.941583 GCAGGGGAAGGGAAGGGT 60.942 66.667 0.00 0.00 0.00 4.34
433 455 1.774894 AACGGGAAGGCAAGGCAGTA 61.775 55.000 0.00 0.00 0.00 2.74
434 456 3.133365 AACGGGAAGGCAAGGCAGT 62.133 57.895 0.00 0.00 0.00 4.40
494 521 2.358372 TGATGGCTGAGCGTGGCTA 61.358 57.895 0.00 0.00 39.88 3.93
507 534 3.052620 GCAGCAGCAGCAGTGATGG 62.053 63.158 10.93 0.00 45.49 3.51
508 535 2.041115 AGCAGCAGCAGCAGTGATG 61.041 57.895 12.92 3.40 45.49 3.07
509 536 2.041115 CAGCAGCAGCAGCAGTGAT 61.041 57.895 12.92 0.00 45.49 3.06
609 675 2.126071 GCTAGCCTGAACGCGACA 60.126 61.111 15.93 11.98 0.00 4.35
616 682 1.660355 CCGCTATCGCTAGCCTGAA 59.340 57.895 12.39 0.00 46.41 3.02
617 683 2.268802 CCCGCTATCGCTAGCCTGA 61.269 63.158 12.39 1.39 46.41 3.86
618 684 2.259818 CCCGCTATCGCTAGCCTG 59.740 66.667 12.39 4.38 46.41 4.85
619 685 2.421923 TACCCCGCTATCGCTAGCCT 62.422 60.000 12.39 0.00 46.41 4.58
620 686 1.530013 TTACCCCGCTATCGCTAGCC 61.530 60.000 12.39 0.00 46.41 3.93
621 687 0.388263 GTTACCCCGCTATCGCTAGC 60.388 60.000 8.22 8.22 45.79 3.42
622 688 0.956633 TGTTACCCCGCTATCGCTAG 59.043 55.000 0.00 0.00 0.00 3.42
623 689 1.624336 ATGTTACCCCGCTATCGCTA 58.376 50.000 0.00 0.00 0.00 4.26
624 690 1.624336 TATGTTACCCCGCTATCGCT 58.376 50.000 0.00 0.00 0.00 4.93
625 691 2.064014 GTTATGTTACCCCGCTATCGC 58.936 52.381 0.00 0.00 0.00 4.58
626 692 3.655276 AGTTATGTTACCCCGCTATCG 57.345 47.619 0.00 0.00 0.00 2.92
627 693 5.718724 ACTAGTTATGTTACCCCGCTATC 57.281 43.478 0.00 0.00 0.00 2.08
628 694 6.950041 TGATACTAGTTATGTTACCCCGCTAT 59.050 38.462 0.00 0.00 0.00 2.97
629 695 6.306199 TGATACTAGTTATGTTACCCCGCTA 58.694 40.000 0.00 0.00 0.00 4.26
630 696 5.142639 TGATACTAGTTATGTTACCCCGCT 58.857 41.667 0.00 0.00 0.00 5.52
631 697 5.458041 TGATACTAGTTATGTTACCCCGC 57.542 43.478 0.00 0.00 0.00 6.13
668 734 4.735662 TCTGCCACGTAAACATGTTTAC 57.264 40.909 35.89 35.89 46.85 2.01
669 735 5.752892 TTTCTGCCACGTAAACATGTTTA 57.247 34.783 23.91 23.91 34.23 2.01
670 736 4.640789 TTTCTGCCACGTAAACATGTTT 57.359 36.364 25.99 25.99 36.63 2.83
671 737 4.640789 TTTTCTGCCACGTAAACATGTT 57.359 36.364 4.92 4.92 0.00 2.71
672 738 4.846779 ATTTTCTGCCACGTAAACATGT 57.153 36.364 0.00 0.00 0.00 3.21
673 739 7.593273 TCTTTAATTTTCTGCCACGTAAACATG 59.407 33.333 0.00 0.00 0.00 3.21
674 740 7.653647 TCTTTAATTTTCTGCCACGTAAACAT 58.346 30.769 0.00 0.00 0.00 2.71
675 741 7.028926 TCTTTAATTTTCTGCCACGTAAACA 57.971 32.000 0.00 0.00 0.00 2.83
676 742 7.917720 TTCTTTAATTTTCTGCCACGTAAAC 57.082 32.000 0.00 0.00 0.00 2.01
677 743 8.928270 TTTTCTTTAATTTTCTGCCACGTAAA 57.072 26.923 0.00 0.00 0.00 2.01
678 744 8.407064 TCTTTTCTTTAATTTTCTGCCACGTAA 58.593 29.630 0.00 0.00 0.00 3.18
679 745 7.932335 TCTTTTCTTTAATTTTCTGCCACGTA 58.068 30.769 0.00 0.00 0.00 3.57
680 746 6.801575 TCTTTTCTTTAATTTTCTGCCACGT 58.198 32.000 0.00 0.00 0.00 4.49
681 747 7.138736 TCTCTTTTCTTTAATTTTCTGCCACG 58.861 34.615 0.00 0.00 0.00 4.94
682 748 8.352942 TCTCTCTTTTCTTTAATTTTCTGCCAC 58.647 33.333 0.00 0.00 0.00 5.01
683 749 8.463930 TCTCTCTTTTCTTTAATTTTCTGCCA 57.536 30.769 0.00 0.00 0.00 4.92
684 750 8.026026 CCTCTCTCTTTTCTTTAATTTTCTGCC 58.974 37.037 0.00 0.00 0.00 4.85
685 751 8.787852 TCCTCTCTCTTTTCTTTAATTTTCTGC 58.212 33.333 0.00 0.00 0.00 4.26
696 762 9.261035 TGTTACTATGATCCTCTCTCTTTTCTT 57.739 33.333 0.00 0.00 0.00 2.52
697 763 8.830915 TGTTACTATGATCCTCTCTCTTTTCT 57.169 34.615 0.00 0.00 0.00 2.52
744 810 9.154847 GCATGACACATAGTAGCATAATATTCA 57.845 33.333 0.00 0.00 27.89 2.57
745 811 9.154847 TGCATGACACATAGTAGCATAATATTC 57.845 33.333 0.00 0.00 27.89 1.75
746 812 9.676861 ATGCATGACACATAGTAGCATAATATT 57.323 29.630 0.00 0.00 39.80 1.28
747 813 9.106070 CATGCATGACACATAGTAGCATAATAT 57.894 33.333 22.59 0.00 39.67 1.28
748 814 7.550196 CCATGCATGACACATAGTAGCATAATA 59.450 37.037 28.31 0.00 39.67 0.98
749 815 6.373495 CCATGCATGACACATAGTAGCATAAT 59.627 38.462 28.31 0.00 39.67 1.28
750 816 5.702209 CCATGCATGACACATAGTAGCATAA 59.298 40.000 28.31 0.00 39.67 1.90
751 817 5.240121 CCATGCATGACACATAGTAGCATA 58.760 41.667 28.31 0.00 39.67 3.14
752 818 4.070009 CCATGCATGACACATAGTAGCAT 58.930 43.478 28.31 0.00 41.24 3.79
753 819 3.469739 CCATGCATGACACATAGTAGCA 58.530 45.455 28.31 0.00 37.13 3.49
754 820 2.225019 GCCATGCATGACACATAGTAGC 59.775 50.000 28.31 14.15 0.00 3.58
755 821 3.469739 TGCCATGCATGACACATAGTAG 58.530 45.455 28.31 8.01 31.71 2.57
756 822 3.557228 TGCCATGCATGACACATAGTA 57.443 42.857 28.31 5.91 31.71 1.82
757 823 2.423446 TGCCATGCATGACACATAGT 57.577 45.000 28.31 0.00 31.71 2.12
758 824 5.441709 TTATTGCCATGCATGACACATAG 57.558 39.130 28.31 10.23 38.76 2.23
759 825 5.848833 TTTATTGCCATGCATGACACATA 57.151 34.783 28.31 17.78 38.76 2.29
760 826 4.739587 TTTATTGCCATGCATGACACAT 57.260 36.364 28.31 18.68 38.76 3.21
761 827 4.159879 TCATTTATTGCCATGCATGACACA 59.840 37.500 28.31 18.81 38.76 3.72
762 828 4.684877 TCATTTATTGCCATGCATGACAC 58.315 39.130 28.31 16.49 38.76 3.67
763 829 4.645588 TCTCATTTATTGCCATGCATGACA 59.354 37.500 28.31 20.53 38.76 3.58
764 830 4.980434 GTCTCATTTATTGCCATGCATGAC 59.020 41.667 28.31 17.77 38.76 3.06
765 831 4.038282 GGTCTCATTTATTGCCATGCATGA 59.962 41.667 28.31 8.76 38.76 3.07
766 832 4.202172 TGGTCTCATTTATTGCCATGCATG 60.202 41.667 20.19 20.19 38.76 4.06
767 833 3.962063 TGGTCTCATTTATTGCCATGCAT 59.038 39.130 0.00 0.00 38.76 3.96
768 834 3.363627 TGGTCTCATTTATTGCCATGCA 58.636 40.909 0.00 0.00 36.47 3.96
769 835 4.280174 AGATGGTCTCATTTATTGCCATGC 59.720 41.667 0.00 0.00 36.91 4.06
770 836 7.392393 TCATAGATGGTCTCATTTATTGCCATG 59.608 37.037 0.00 0.00 36.91 3.66
771 837 7.464273 TCATAGATGGTCTCATTTATTGCCAT 58.536 34.615 0.00 0.00 39.17 4.40
772 838 6.840527 TCATAGATGGTCTCATTTATTGCCA 58.159 36.000 0.00 0.00 30.94 4.92
773 839 7.934855 ATCATAGATGGTCTCATTTATTGCC 57.065 36.000 0.00 0.00 30.94 4.52
774 840 9.664332 AGTATCATAGATGGTCTCATTTATTGC 57.336 33.333 0.00 0.00 30.94 3.56
809 875 9.700831 TGATACTACATCCATAGTGCATAGTAT 57.299 33.333 9.49 9.49 37.18 2.12
810 876 9.700831 ATGATACTACATCCATAGTGCATAGTA 57.299 33.333 0.00 0.00 36.09 1.82
811 877 8.601047 ATGATACTACATCCATAGTGCATAGT 57.399 34.615 0.00 0.00 36.09 2.12
812 878 9.958234 GTATGATACTACATCCATAGTGCATAG 57.042 37.037 0.00 0.00 36.05 2.23
813 879 9.474313 TGTATGATACTACATCCATAGTGCATA 57.526 33.333 4.03 0.00 36.09 3.14
814 880 8.253810 GTGTATGATACTACATCCATAGTGCAT 58.746 37.037 4.03 0.00 36.09 3.96
815 881 7.451566 AGTGTATGATACTACATCCATAGTGCA 59.548 37.037 4.03 0.00 36.09 4.57
816 882 7.831753 AGTGTATGATACTACATCCATAGTGC 58.168 38.462 4.03 0.00 36.09 4.40
851 917 8.182227 GCGAGTAACATATAGTAGTATCATGCA 58.818 37.037 0.00 0.00 0.00 3.96
852 918 7.644551 GGCGAGTAACATATAGTAGTATCATGC 59.355 40.741 0.00 0.00 0.00 4.06
853 919 8.674607 TGGCGAGTAACATATAGTAGTATCATG 58.325 37.037 0.00 0.00 0.00 3.07
854 920 8.803397 TGGCGAGTAACATATAGTAGTATCAT 57.197 34.615 0.00 0.00 0.00 2.45
855 921 8.803397 ATGGCGAGTAACATATAGTAGTATCA 57.197 34.615 0.00 0.00 0.00 2.15
859 925 9.239551 TCATAATGGCGAGTAACATATAGTAGT 57.760 33.333 0.00 0.00 0.00 2.73
860 926 9.504710 GTCATAATGGCGAGTAACATATAGTAG 57.495 37.037 0.00 0.00 0.00 2.57
861 927 9.016438 TGTCATAATGGCGAGTAACATATAGTA 57.984 33.333 0.00 0.00 0.00 1.82
862 928 7.892609 TGTCATAATGGCGAGTAACATATAGT 58.107 34.615 0.00 0.00 0.00 2.12
863 929 8.757164 TTGTCATAATGGCGAGTAACATATAG 57.243 34.615 0.00 0.00 0.00 1.31
864 930 7.330946 GCTTGTCATAATGGCGAGTAACATATA 59.669 37.037 0.00 0.00 35.91 0.86
865 931 6.147821 GCTTGTCATAATGGCGAGTAACATAT 59.852 38.462 0.00 0.00 35.91 1.78
866 932 5.465390 GCTTGTCATAATGGCGAGTAACATA 59.535 40.000 0.00 0.00 35.91 2.29
867 933 4.273480 GCTTGTCATAATGGCGAGTAACAT 59.727 41.667 0.00 0.00 35.91 2.71
868 934 3.621268 GCTTGTCATAATGGCGAGTAACA 59.379 43.478 0.00 0.00 35.91 2.41
869 935 3.002348 GGCTTGTCATAATGGCGAGTAAC 59.998 47.826 0.00 0.00 35.91 2.50
870 936 3.118408 AGGCTTGTCATAATGGCGAGTAA 60.118 43.478 0.00 0.00 35.91 2.24
871 937 2.434336 AGGCTTGTCATAATGGCGAGTA 59.566 45.455 0.00 0.00 35.91 2.59
872 938 1.210478 AGGCTTGTCATAATGGCGAGT 59.790 47.619 0.00 0.00 35.91 4.18
873 939 1.869767 GAGGCTTGTCATAATGGCGAG 59.130 52.381 0.00 0.00 36.57 5.03
874 940 1.209261 TGAGGCTTGTCATAATGGCGA 59.791 47.619 0.00 0.00 0.00 5.54
875 941 1.667236 TGAGGCTTGTCATAATGGCG 58.333 50.000 0.00 0.00 0.00 5.69
876 942 4.380233 GCATATGAGGCTTGTCATAATGGC 60.380 45.833 6.97 8.19 41.63 4.40
877 943 4.157289 GGCATATGAGGCTTGTCATAATGG 59.843 45.833 6.97 3.82 41.63 3.16
878 944 4.157289 GGGCATATGAGGCTTGTCATAATG 59.843 45.833 6.97 7.88 41.63 1.90
879 945 4.202599 TGGGCATATGAGGCTTGTCATAAT 60.203 41.667 6.97 0.00 41.63 1.28
880 946 3.138098 TGGGCATATGAGGCTTGTCATAA 59.862 43.478 6.97 0.00 41.63 1.90
881 947 2.710471 TGGGCATATGAGGCTTGTCATA 59.290 45.455 6.97 6.47 42.33 2.15
882 948 1.496001 TGGGCATATGAGGCTTGTCAT 59.504 47.619 6.97 0.00 40.40 3.06
883 949 0.918258 TGGGCATATGAGGCTTGTCA 59.082 50.000 6.97 0.00 0.00 3.58
884 950 1.312815 GTGGGCATATGAGGCTTGTC 58.687 55.000 6.97 0.00 0.00 3.18
885 951 0.464373 CGTGGGCATATGAGGCTTGT 60.464 55.000 6.97 0.00 0.00 3.16
886 952 0.179048 TCGTGGGCATATGAGGCTTG 60.179 55.000 6.97 0.00 0.00 4.01
887 953 0.179045 GTCGTGGGCATATGAGGCTT 60.179 55.000 6.97 0.00 0.00 4.35
888 954 1.447643 GTCGTGGGCATATGAGGCT 59.552 57.895 6.97 0.00 0.00 4.58
889 955 1.598130 GGTCGTGGGCATATGAGGC 60.598 63.158 6.97 0.00 0.00 4.70
890 956 1.071471 GGGTCGTGGGCATATGAGG 59.929 63.158 6.97 0.00 0.00 3.86
891 957 1.071471 GGGGTCGTGGGCATATGAG 59.929 63.158 6.97 0.00 0.00 2.90
984 1063 1.153208 GTCTCGGGTCTCGGCTAGA 60.153 63.158 0.00 0.00 39.77 2.43
985 1064 1.451567 TGTCTCGGGTCTCGGCTAG 60.452 63.158 0.00 0.00 39.77 3.42
986 1065 1.748122 GTGTCTCGGGTCTCGGCTA 60.748 63.158 0.00 0.00 39.77 3.93
987 1066 3.063084 GTGTCTCGGGTCTCGGCT 61.063 66.667 0.00 0.00 39.77 5.52
988 1067 4.131088 GGTGTCTCGGGTCTCGGC 62.131 72.222 0.00 0.00 39.77 5.54
991 1070 1.939769 GCTCTGGTGTCTCGGGTCTC 61.940 65.000 0.00 0.00 0.00 3.36
992 1071 1.979693 GCTCTGGTGTCTCGGGTCT 60.980 63.158 0.00 0.00 0.00 3.85
993 1072 2.276116 TGCTCTGGTGTCTCGGGTC 61.276 63.158 0.00 0.00 0.00 4.46
994 1073 2.203640 TGCTCTGGTGTCTCGGGT 60.204 61.111 0.00 0.00 0.00 5.28
996 1075 2.262915 GGTGCTCTGGTGTCTCGG 59.737 66.667 0.00 0.00 0.00 4.63
998 1077 1.214062 CTCGGTGCTCTGGTGTCTC 59.786 63.158 0.00 0.00 0.00 3.36
999 1078 2.936912 GCTCGGTGCTCTGGTGTCT 61.937 63.158 0.00 0.00 38.95 3.41
1000 1079 2.433318 GCTCGGTGCTCTGGTGTC 60.433 66.667 0.00 0.00 38.95 3.67
1034 1128 0.320247 CTTCTTGTCTGACTGGCGCT 60.320 55.000 7.64 0.00 0.00 5.92
1040 1134 1.373497 CGCGGCTTCTTGTCTGACT 60.373 57.895 9.51 0.00 0.00 3.41
1041 1135 3.016474 GCGCGGCTTCTTGTCTGAC 62.016 63.158 8.83 0.00 0.00 3.51
1046 1140 4.012895 CGTTGCGCGGCTTCTTGT 62.013 61.111 8.83 0.00 36.85 3.16
1577 1678 4.688511 TGTTGACATTAATGGCCGTTAC 57.311 40.909 18.75 11.39 33.92 2.50
1579 1680 4.021544 ACATTGTTGACATTAATGGCCGTT 60.022 37.500 18.75 16.02 36.41 4.44
1613 2138 6.618287 TTCATCAATAATCAACCCACGATC 57.382 37.500 0.00 0.00 0.00 3.69
1615 2140 6.118852 TCATTCATCAATAATCAACCCACGA 58.881 36.000 0.00 0.00 0.00 4.35
1623 2148 7.666623 AGCATGCATTCATTCATCAATAATCA 58.333 30.769 21.98 0.00 0.00 2.57
1765 2291 0.846427 TTGGAGGCCTTGATGTCCCT 60.846 55.000 6.77 0.00 0.00 4.20
1812 2338 1.080434 GACCGAGTGACTGACCTGC 60.080 63.158 0.00 0.00 0.00 4.85
1827 2353 1.400371 CGATCGACGATGGAGATGACC 60.400 57.143 16.49 0.00 45.77 4.02
1828 2354 1.531578 TCGATCGACGATGGAGATGAC 59.468 52.381 16.49 0.00 46.45 3.06
1829 2355 1.878953 TCGATCGACGATGGAGATGA 58.121 50.000 16.49 0.64 46.45 2.92
1894 2450 0.727970 AGTCGGAGATCTGTCGTTCG 59.272 55.000 0.00 0.00 40.67 3.95
1897 2453 0.727970 CGAAGTCGGAGATCTGTCGT 59.272 55.000 0.00 0.00 40.67 4.34
1898 2454 3.518017 CGAAGTCGGAGATCTGTCG 57.482 57.895 0.00 4.17 40.67 4.35
2129 2860 3.446310 AAATGTTTGGTTGGTCGGTTC 57.554 42.857 0.00 0.00 0.00 3.62
2216 2949 1.070038 CATTCGCATTGTTTGGGCAC 58.930 50.000 0.00 0.00 38.14 5.01
2219 2952 3.511182 TGCATTCGCATTGTTTGGG 57.489 47.368 0.00 0.00 45.36 4.12
2247 2980 0.179032 TCTTGCCCTCGTTGAGCAAA 60.179 50.000 0.00 0.00 45.20 3.68
2248 2981 0.884704 GTCTTGCCCTCGTTGAGCAA 60.885 55.000 0.00 0.00 43.83 3.91
2394 3130 2.273370 TTGCGAGTAAGCTTACCTCG 57.727 50.000 31.82 31.82 37.36 4.63
2416 3152 1.511850 TGTGATTCGTGCAGGACAAG 58.488 50.000 8.96 0.00 0.00 3.16
2418 3154 1.805943 CATTGTGATTCGTGCAGGACA 59.194 47.619 8.96 1.88 0.00 4.02
2419 3155 1.131126 CCATTGTGATTCGTGCAGGAC 59.869 52.381 8.96 0.00 0.00 3.85
2420 3156 1.452110 CCATTGTGATTCGTGCAGGA 58.548 50.000 4.68 4.68 0.00 3.86
2421 3157 0.179156 GCCATTGTGATTCGTGCAGG 60.179 55.000 0.00 0.00 0.00 4.85
2422 3158 0.806868 AGCCATTGTGATTCGTGCAG 59.193 50.000 0.00 0.00 0.00 4.41
2428 3172 3.379372 ACATGTGCTAGCCATTGTGATTC 59.621 43.478 13.29 0.00 0.00 2.52
2429 3173 3.359033 ACATGTGCTAGCCATTGTGATT 58.641 40.909 13.29 0.00 0.00 2.57
2477 3243 7.359765 GCAAATTAAGCAACGAACAGAGTAGTA 60.360 37.037 0.00 0.00 0.00 1.82
2478 3244 6.565999 GCAAATTAAGCAACGAACAGAGTAGT 60.566 38.462 0.00 0.00 0.00 2.73
2479 3245 5.790495 GCAAATTAAGCAACGAACAGAGTAG 59.210 40.000 0.00 0.00 0.00 2.57
2507 3273 8.565583 CATTTTCAAATTGTCAACGTTGTTTTG 58.434 29.630 26.47 25.61 0.00 2.44
2508 3274 8.286097 ACATTTTCAAATTGTCAACGTTGTTTT 58.714 25.926 26.47 17.99 0.00 2.43
2509 3275 7.801752 ACATTTTCAAATTGTCAACGTTGTTT 58.198 26.923 26.47 16.79 0.00 2.83
2524 3293 4.955925 ATCCGTCGCATACATTTTCAAA 57.044 36.364 0.00 0.00 0.00 2.69
2543 3312 3.213206 TGCCACCACCATCAGATTATC 57.787 47.619 0.00 0.00 0.00 1.75
2583 3352 2.686470 CCCTCCAGCAGCTCCAGA 60.686 66.667 0.00 0.00 0.00 3.86
2703 3472 2.893398 GTGCCGGATTCCTCGTCT 59.107 61.111 5.05 0.00 0.00 4.18
2704 3473 2.582498 CGTGCCGGATTCCTCGTC 60.582 66.667 5.05 0.00 0.00 4.20
2705 3474 4.814294 GCGTGCCGGATTCCTCGT 62.814 66.667 5.05 0.00 0.00 4.18
2764 3533 3.048600 TCACATAATCTTAGCCTGGCCT 58.951 45.455 16.57 5.44 0.00 5.19
2765 3534 3.071602 TCTCACATAATCTTAGCCTGGCC 59.928 47.826 16.57 0.00 0.00 5.36
2766 3535 4.061596 GTCTCACATAATCTTAGCCTGGC 58.938 47.826 11.65 11.65 0.00 4.85
2767 3536 4.038042 TCGTCTCACATAATCTTAGCCTGG 59.962 45.833 0.00 0.00 0.00 4.45
2768 3537 4.979197 GTCGTCTCACATAATCTTAGCCTG 59.021 45.833 0.00 0.00 0.00 4.85
2769 3538 4.038162 GGTCGTCTCACATAATCTTAGCCT 59.962 45.833 0.00 0.00 0.00 4.58
2780 3549 0.458543 GCATCACGGTCGTCTCACAT 60.459 55.000 0.00 0.00 0.00 3.21
2781 3550 1.080772 GCATCACGGTCGTCTCACA 60.081 57.895 0.00 0.00 0.00 3.58
2838 3607 3.948004 TTACAATGTGGGGCCCGGC 62.948 63.158 19.83 14.19 0.00 6.13
2840 3609 0.459489 CATTTACAATGTGGGGCCCG 59.541 55.000 19.83 5.32 0.00 6.13
2841 3610 1.480545 GTCATTTACAATGTGGGGCCC 59.519 52.381 18.17 18.17 0.00 5.80
2843 3612 2.094234 GGTGTCATTTACAATGTGGGGC 60.094 50.000 0.00 0.00 40.63 5.80
2844 3613 3.056891 GTGGTGTCATTTACAATGTGGGG 60.057 47.826 0.00 0.00 40.63 4.96
2845 3614 3.571828 TGTGGTGTCATTTACAATGTGGG 59.428 43.478 0.00 0.00 40.63 4.61
2846 3615 4.844998 TGTGGTGTCATTTACAATGTGG 57.155 40.909 0.00 0.00 40.63 4.17
2847 3616 5.691305 CCTTTGTGGTGTCATTTACAATGTG 59.309 40.000 0.00 0.00 40.63 3.21
2848 3617 5.738783 GCCTTTGTGGTGTCATTTACAATGT 60.739 40.000 0.00 0.00 40.63 2.71
2849 3618 4.685628 GCCTTTGTGGTGTCATTTACAATG 59.314 41.667 0.00 0.00 40.63 2.82
2850 3619 4.588528 AGCCTTTGTGGTGTCATTTACAAT 59.411 37.500 0.00 0.00 40.63 2.71
2851 3620 3.957497 AGCCTTTGTGGTGTCATTTACAA 59.043 39.130 0.00 0.00 40.63 2.41
2852 3621 3.561143 AGCCTTTGTGGTGTCATTTACA 58.439 40.909 0.00 0.00 38.35 2.41
2853 3622 4.584327 AAGCCTTTGTGGTGTCATTTAC 57.416 40.909 0.00 0.00 38.35 2.01
2854 3623 5.596845 GAAAAGCCTTTGTGGTGTCATTTA 58.403 37.500 0.00 0.00 38.35 1.40
2855 3624 4.441792 GAAAAGCCTTTGTGGTGTCATTT 58.558 39.130 0.00 0.00 38.35 2.32
2856 3625 3.490761 CGAAAAGCCTTTGTGGTGTCATT 60.491 43.478 0.00 0.00 38.35 2.57
2857 3626 2.034558 CGAAAAGCCTTTGTGGTGTCAT 59.965 45.455 0.00 0.00 38.35 3.06
2858 3627 1.403679 CGAAAAGCCTTTGTGGTGTCA 59.596 47.619 0.00 0.00 38.35 3.58
2859 3628 1.404035 ACGAAAAGCCTTTGTGGTGTC 59.596 47.619 0.00 0.00 38.35 3.67
2860 3629 1.470051 ACGAAAAGCCTTTGTGGTGT 58.530 45.000 0.00 0.00 38.35 4.16
2861 3630 2.192624 CAACGAAAAGCCTTTGTGGTG 58.807 47.619 0.00 0.00 38.35 4.17
2862 3631 1.822371 ACAACGAAAAGCCTTTGTGGT 59.178 42.857 0.00 0.00 38.35 4.16
2863 3632 2.459934 GACAACGAAAAGCCTTTGTGG 58.540 47.619 0.00 0.00 32.34 4.17
2864 3633 2.108700 CGACAACGAAAAGCCTTTGTG 58.891 47.619 0.00 0.00 42.66 3.33
2865 3634 2.011222 TCGACAACGAAAAGCCTTTGT 58.989 42.857 0.00 0.00 45.74 2.83
2866 3635 2.748461 TCGACAACGAAAAGCCTTTG 57.252 45.000 0.00 0.00 45.74 2.77
2913 3682 0.178961 GGGGAGGTTTCACTTGCCTT 60.179 55.000 0.00 0.00 35.98 4.35
2922 3691 1.302271 GACACACGGGGGAGGTTTC 60.302 63.158 0.00 0.00 0.00 2.78
2926 3695 4.065281 GTCGACACACGGGGGAGG 62.065 72.222 11.55 0.00 42.82 4.30
2934 3703 1.007336 GTCATGGTCCGTCGACACAC 61.007 60.000 17.16 10.72 41.13 3.82
2935 3704 1.287815 GTCATGGTCCGTCGACACA 59.712 57.895 17.16 8.92 41.13 3.72
2936 3705 1.287815 TGTCATGGTCCGTCGACAC 59.712 57.895 17.16 6.94 41.13 3.67
2937 3706 1.287815 GTGTCATGGTCCGTCGACA 59.712 57.895 17.16 10.55 41.13 4.35
2938 3707 1.800315 CGTGTCATGGTCCGTCGAC 60.800 63.158 5.18 5.18 38.38 4.20
2939 3708 1.967494 TCGTGTCATGGTCCGTCGA 60.967 57.895 0.00 0.00 0.00 4.20
2940 3709 1.800315 GTCGTGTCATGGTCCGTCG 60.800 63.158 0.00 0.00 0.00 5.12
2941 3710 1.800315 CGTCGTGTCATGGTCCGTC 60.800 63.158 0.00 0.00 0.00 4.79
2942 3711 2.196382 CTCGTCGTGTCATGGTCCGT 62.196 60.000 0.00 0.00 0.00 4.69
2944 3713 0.242825 TTCTCGTCGTGTCATGGTCC 59.757 55.000 0.00 0.00 0.00 4.46
2950 3719 2.100252 ACCTTCTTTTCTCGTCGTGTCA 59.900 45.455 0.00 0.00 0.00 3.58
2958 3727 1.398960 CGCAAGCACCTTCTTTTCTCG 60.399 52.381 0.00 0.00 0.00 4.04
2959 3728 1.604278 ACGCAAGCACCTTCTTTTCTC 59.396 47.619 0.00 0.00 45.62 2.87
2960 3729 1.334869 CACGCAAGCACCTTCTTTTCT 59.665 47.619 0.00 0.00 45.62 2.52
2999 3771 0.605589 CCCGACAAAACCCTCAGTCC 60.606 60.000 0.00 0.00 0.00 3.85
3003 3775 1.527380 GTGCCCGACAAAACCCTCA 60.527 57.895 0.00 0.00 0.00 3.86
3021 3793 0.249489 CGGTCTCTTTCCCTATGCCG 60.249 60.000 0.00 0.00 0.00 5.69
3024 3796 1.067212 CGGTCGGTCTCTTTCCCTATG 59.933 57.143 0.00 0.00 0.00 2.23
3025 3797 1.064166 TCGGTCGGTCTCTTTCCCTAT 60.064 52.381 0.00 0.00 0.00 2.57
3026 3798 0.329261 TCGGTCGGTCTCTTTCCCTA 59.671 55.000 0.00 0.00 0.00 3.53
3061 3833 4.229123 AGCCAGGTAGTACTACTCTTGGTA 59.771 45.833 30.30 3.71 35.97 3.25
3062 3834 3.011482 AGCCAGGTAGTACTACTCTTGGT 59.989 47.826 30.30 23.42 35.97 3.67
3063 3835 3.381908 CAGCCAGGTAGTACTACTCTTGG 59.618 52.174 28.38 28.38 36.29 3.61
3064 3836 3.381908 CCAGCCAGGTAGTACTACTCTTG 59.618 52.174 27.71 22.10 36.36 3.02
3065 3837 3.633418 CCAGCCAGGTAGTACTACTCTT 58.367 50.000 27.71 14.07 36.36 2.85
3066 3838 2.687314 GCCAGCCAGGTAGTACTACTCT 60.687 54.545 27.71 20.73 40.61 3.24
3067 3839 1.682323 GCCAGCCAGGTAGTACTACTC 59.318 57.143 27.71 19.13 40.61 2.59
3068 3840 1.288335 AGCCAGCCAGGTAGTACTACT 59.712 52.381 27.71 14.14 40.61 2.57
3069 3841 1.409427 CAGCCAGCCAGGTAGTACTAC 59.591 57.143 22.53 22.53 40.61 2.73
3070 3842 1.688311 CCAGCCAGCCAGGTAGTACTA 60.688 57.143 0.00 0.00 40.61 1.82
3071 3843 0.978146 CCAGCCAGCCAGGTAGTACT 60.978 60.000 0.00 0.00 40.61 2.73
3072 3844 1.522569 CCAGCCAGCCAGGTAGTAC 59.477 63.158 0.00 0.00 40.61 2.73
3073 3845 2.367202 GCCAGCCAGCCAGGTAGTA 61.367 63.158 0.00 0.00 40.61 1.82
3074 3846 3.721706 GCCAGCCAGCCAGGTAGT 61.722 66.667 0.00 0.00 40.61 2.73
3075 3847 3.406200 AGCCAGCCAGCCAGGTAG 61.406 66.667 0.00 0.00 40.61 3.18
3076 3848 3.720601 CAGCCAGCCAGCCAGGTA 61.721 66.667 0.00 0.00 40.61 3.08
3089 3861 4.660938 AACCCAACCGGAGCAGCC 62.661 66.667 9.46 0.00 34.64 4.85
3090 3862 3.365265 CAACCCAACCGGAGCAGC 61.365 66.667 9.46 0.00 34.64 5.25
3091 3863 2.672996 CCAACCCAACCGGAGCAG 60.673 66.667 9.46 0.00 34.64 4.24
3092 3864 4.278513 CCCAACCCAACCGGAGCA 62.279 66.667 9.46 0.00 34.64 4.26
3093 3865 2.897762 TACCCAACCCAACCGGAGC 61.898 63.158 9.46 0.00 34.64 4.70
3113 3915 2.936498 CGTCCATACAACTGGAATCCAC 59.064 50.000 0.00 0.00 46.66 4.02
3179 3981 1.005340 GAATGCACTTCTCCAGAGCG 58.995 55.000 0.00 0.00 41.79 5.03
3180 3982 1.005340 CGAATGCACTTCTCCAGAGC 58.995 55.000 0.00 0.00 39.45 4.09
3185 3987 1.079503 GGACACGAATGCACTTCTCC 58.920 55.000 0.00 0.00 0.00 3.71
3251 4058 1.968540 GGGTCACAGCTCAACCTGC 60.969 63.158 8.24 0.00 36.29 4.85
3333 4149 1.191535 TGATCGATCGGTCCCTGTTT 58.808 50.000 24.86 0.00 0.00 2.83
3454 4282 1.070786 GTCAACCAACCTCGCCTCA 59.929 57.895 0.00 0.00 0.00 3.86
3552 4380 7.542025 ACTGTATCCCACTTTAGTACTTTACG 58.458 38.462 0.00 0.00 0.00 3.18
3642 4474 4.699925 TTATACCACCTGGCCAGTATTC 57.300 45.455 30.63 0.00 39.32 1.75
3686 4518 8.453498 TGAATAAACCCTACTATTATACCCCC 57.547 38.462 0.00 0.00 0.00 5.40
3687 4519 8.546322 CCTGAATAAACCCTACTATTATACCCC 58.454 40.741 0.00 0.00 0.00 4.95
3688 4520 9.330220 TCCTGAATAAACCCTACTATTATACCC 57.670 37.037 0.00 0.00 0.00 3.69
3799 4632 1.516892 CTCAGAGCTCAGCCCAGAC 59.483 63.158 17.77 0.00 0.00 3.51
3800 4633 2.357575 GCTCAGAGCTCAGCCCAGA 61.358 63.158 17.77 2.93 38.45 3.86
3801 4634 2.187424 GCTCAGAGCTCAGCCCAG 59.813 66.667 17.77 2.63 38.45 4.45
3810 4643 1.818060 TCAGAGTTCAGAGCTCAGAGC 59.182 52.381 17.77 15.25 42.84 4.09
3811 4644 3.674138 GCTTCAGAGTTCAGAGCTCAGAG 60.674 52.174 17.77 10.85 35.55 3.35
3812 4645 2.230992 GCTTCAGAGTTCAGAGCTCAGA 59.769 50.000 17.77 11.16 35.55 3.27
3860 4693 3.558418 TCGCAACAGGTGTAGAAAGAAAC 59.442 43.478 0.00 0.00 0.00 2.78
3862 4695 3.128349 GTCGCAACAGGTGTAGAAAGAA 58.872 45.455 0.00 0.00 0.00 2.52
3864 4697 2.476619 CAGTCGCAACAGGTGTAGAAAG 59.523 50.000 0.00 0.00 0.00 2.62
3889 4722 1.299976 GTGAGCAAATCCCTCCCGT 59.700 57.895 0.00 0.00 0.00 5.28
3890 4723 1.815421 CGTGAGCAAATCCCTCCCG 60.815 63.158 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.