Multiple sequence alignment - TraesCS7D01G424100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G424100 chr7D 100.000 5115 0 0 1 5115 544777167 544782281 0.000000e+00 9446.0
1 TraesCS7D01G424100 chr7D 100.000 2587 0 0 5680 8266 544782846 544785432 0.000000e+00 4778.0
2 TraesCS7D01G424100 chr7D 96.172 1280 47 1 925 2202 544849323 544850602 0.000000e+00 2091.0
3 TraesCS7D01G424100 chr7D 87.508 1585 178 14 993 2570 486241587 486240016 0.000000e+00 1812.0
4 TraesCS7D01G424100 chr7D 92.632 190 12 2 2622 2810 486239884 486239696 1.060000e-68 272.0
5 TraesCS7D01G424100 chr7D 100.000 37 0 0 5680 5716 595686982 595687018 1.490000e-07 69.4
6 TraesCS7D01G424100 chr7B 93.949 2099 88 9 542 2614 588083827 588085912 0.000000e+00 3136.0
7 TraesCS7D01G424100 chr7B 95.804 1692 68 2 925 2614 588239419 588241109 0.000000e+00 2728.0
8 TraesCS7D01G424100 chr7B 95.567 1692 72 2 925 2614 588252770 588254460 0.000000e+00 2706.0
9 TraesCS7D01G424100 chr7B 95.272 1692 73 4 925 2614 588261926 588263612 0.000000e+00 2675.0
10 TraesCS7D01G424100 chr7B 89.964 1923 95 36 6389 8266 588256750 588258619 0.000000e+00 2392.0
11 TraesCS7D01G424100 chr7B 95.843 1299 42 7 2622 3909 588086016 588087313 0.000000e+00 2089.0
12 TraesCS7D01G424100 chr7B 95.077 1300 50 8 2622 3909 588254564 588255861 0.000000e+00 2034.0
13 TraesCS7D01G424100 chr7B 94.094 1270 56 10 6389 7644 588281552 588282816 0.000000e+00 1912.0
14 TraesCS7D01G424100 chr7B 93.457 1299 42 9 2622 3909 588242039 588243305 0.000000e+00 1888.0
15 TraesCS7D01G424100 chr7B 87.475 1493 165 15 993 2478 514062892 514061415 0.000000e+00 1701.0
16 TraesCS7D01G424100 chr7B 93.345 1097 57 13 6551 7643 588244341 588245425 0.000000e+00 1607.0
17 TraesCS7D01G424100 chr7B 94.559 974 45 6 6551 7523 588088508 588089474 0.000000e+00 1498.0
18 TraesCS7D01G424100 chr7B 95.845 698 25 3 2622 3318 588263716 588264410 0.000000e+00 1125.0
19 TraesCS7D01G424100 chr7B 97.083 617 15 2 5776 6392 588280651 588281264 0.000000e+00 1037.0
20 TraesCS7D01G424100 chr7B 95.861 604 12 4 5759 6355 588255848 588256445 0.000000e+00 965.0
21 TraesCS7D01G424100 chr7B 81.121 1213 204 16 1001 2208 443327535 443326343 0.000000e+00 948.0
22 TraesCS7D01G424100 chr7B 94.463 614 26 5 5776 6389 588243316 588243921 0.000000e+00 939.0
23 TraesCS7D01G424100 chr7B 94.719 606 23 4 3313 3909 588280035 588280640 0.000000e+00 933.0
24 TraesCS7D01G424100 chr7B 84.498 658 48 17 7644 8266 588236263 588236901 1.190000e-167 601.0
25 TraesCS7D01G424100 chr7B 95.858 338 10 2 6055 6392 588087759 588088092 2.030000e-150 544.0
26 TraesCS7D01G424100 chr7B 84.264 591 52 17 7646 8213 588282864 588283436 9.440000e-149 538.0
27 TraesCS7D01G424100 chr7B 81.599 663 51 23 7646 8266 588245473 588246106 4.490000e-132 483.0
28 TraesCS7D01G424100 chr7B 92.734 289 6 3 5776 6064 588087324 588087597 3.590000e-108 403.0
29 TraesCS7D01G424100 chr7B 92.444 225 14 3 1 222 615182372 615182596 1.340000e-82 318.0
30 TraesCS7D01G424100 chr7B 98.519 135 2 0 6389 6523 588244213 588244347 1.070000e-58 239.0
31 TraesCS7D01G424100 chr7B 96.296 135 5 0 6389 6523 588088380 588088514 1.080000e-53 222.0
32 TraesCS7D01G424100 chr7B 94.118 85 3 1 469 551 588082322 588082406 2.420000e-25 128.0
33 TraesCS7D01G424100 chr7B 79.803 203 18 13 264 458 588082059 588082246 8.710000e-25 126.0
34 TraesCS7D01G424100 chr7B 100.000 30 0 0 3115 3144 514061374 514061403 1.000000e-03 56.5
35 TraesCS7D01G424100 chr3D 96.940 1209 35 2 3908 5115 94804952 94803745 0.000000e+00 2026.0
36 TraesCS7D01G424100 chr3D 96.361 1209 43 1 3908 5115 582096275 582097483 0.000000e+00 1988.0
37 TraesCS7D01G424100 chr3D 94.338 1201 66 2 3908 5106 319047421 319046221 0.000000e+00 1840.0
38 TraesCS7D01G424100 chr3D 93.274 223 13 2 2 222 236667134 236666912 2.220000e-85 327.0
39 TraesCS7D01G424100 chr3D 96.970 165 5 0 6036 6200 91102922 91102758 2.270000e-70 278.0
40 TraesCS7D01G424100 chr3D 100.000 40 0 0 5680 5719 73727249 73727288 3.200000e-09 75.0
41 TraesCS7D01G424100 chr5A 96.523 1208 41 1 3909 5115 71471861 71473068 0.000000e+00 1997.0
42 TraesCS7D01G424100 chr5A 95.349 172 7 1 6024 6195 261823709 261823539 1.060000e-68 272.0
43 TraesCS7D01G424100 chr5A 83.590 195 20 8 8023 8213 697618667 697618481 1.100000e-38 172.0
44 TraesCS7D01G424100 chr1D 96.832 1168 36 1 3909 5075 292525842 292524675 0.000000e+00 1951.0
45 TraesCS7D01G424100 chr1D 92.511 227 14 3 2 225 336628235 336628461 1.030000e-83 322.0
46 TraesCS7D01G424100 chr1D 96.970 165 5 0 6036 6200 345944076 345944240 2.270000e-70 278.0
47 TraesCS7D01G424100 chr1D 100.000 39 0 0 5680 5718 351407379 351407417 1.150000e-08 73.1
48 TraesCS7D01G424100 chr7A 95.652 1219 33 7 1396 2614 626603284 626604482 0.000000e+00 1940.0
49 TraesCS7D01G424100 chr7A 95.324 1219 37 7 1396 2614 626572330 626573528 0.000000e+00 1917.0
50 TraesCS7D01G424100 chr7A 96.142 648 15 5 3272 3909 626605782 626606429 0.000000e+00 1050.0
51 TraesCS7D01G424100 chr7A 95.138 617 19 3 5776 6392 626606440 626607045 0.000000e+00 963.0
52 TraesCS7D01G424100 chr7A 95.956 544 11 5 6389 6926 626607334 626607872 0.000000e+00 872.0
53 TraesCS7D01G424100 chr7A 88.117 749 62 14 6918 7644 626608519 626609262 0.000000e+00 865.0
54 TraesCS7D01G424100 chr7A 86.633 793 67 11 630 1398 626597334 626598111 0.000000e+00 841.0
55 TraesCS7D01G424100 chr7A 87.865 651 59 12 6880 7523 554855699 554855062 0.000000e+00 747.0
56 TraesCS7D01G424100 chr7A 86.083 697 64 13 720 1398 626566460 626567141 0.000000e+00 719.0
57 TraesCS7D01G424100 chr7A 95.561 383 17 0 2622 3004 626573632 626574014 1.520000e-171 614.0
58 TraesCS7D01G424100 chr7A 95.561 383 17 0 2622 3004 626604586 626604968 1.520000e-171 614.0
59 TraesCS7D01G424100 chr7A 95.789 285 10 2 2996 3278 626605085 626605369 7.560000e-125 459.0
60 TraesCS7D01G424100 chr7A 97.561 41 1 0 630 670 626566404 626566444 4.140000e-08 71.3
61 TraesCS7D01G424100 chr2A 95.383 1213 54 2 3905 5115 598624086 598625298 0.000000e+00 1929.0
62 TraesCS7D01G424100 chr2D 95.289 1210 56 1 3907 5115 476317584 476316375 0.000000e+00 1917.0
63 TraesCS7D01G424100 chr2D 92.952 227 13 3 2 225 627064743 627064517 2.220000e-85 327.0
64 TraesCS7D01G424100 chr2D 80.383 209 27 9 8025 8230 27471515 27471712 6.690000e-31 147.0
65 TraesCS7D01G424100 chr3A 94.872 1209 59 3 3908 5115 690719078 690717872 0.000000e+00 1886.0
66 TraesCS7D01G424100 chr6A 94.267 1221 61 9 3900 5115 596508969 596510185 0.000000e+00 1858.0
67 TraesCS7D01G424100 chr4D 92.920 226 14 2 2 225 49950143 49949918 2.220000e-85 327.0
68 TraesCS7D01G424100 chr4D 92.511 227 14 3 2 225 364375318 364375544 1.030000e-83 322.0
69 TraesCS7D01G424100 chr4D 96.970 165 5 0 6036 6200 407093025 407092861 2.270000e-70 278.0
70 TraesCS7D01G424100 chr4D 96.970 165 5 0 6036 6200 446013910 446013746 2.270000e-70 278.0
71 TraesCS7D01G424100 chr6D 92.576 229 12 5 2 225 75644011 75643783 2.880000e-84 324.0
72 TraesCS7D01G424100 chr3B 92.793 222 15 1 2 222 354033947 354033726 3.720000e-83 320.0
73 TraesCS7D01G424100 chr5D 91.518 224 17 2 1 222 95536983 95537206 2.900000e-79 307.0
74 TraesCS7D01G424100 chrUn 85.629 167 20 4 8023 8188 182870105 182869942 1.100000e-38 172.0
75 TraesCS7D01G424100 chr5B 85.629 167 20 4 8023 8188 676057761 676057598 1.100000e-38 172.0
76 TraesCS7D01G424100 chr4A 79.661 236 38 7 8032 8258 732202758 732202524 2.390000e-35 161.0
77 TraesCS7D01G424100 chr4B 82.682 179 20 10 8024 8199 670830636 670830466 1.860000e-31 148.0
78 TraesCS7D01G424100 chr1B 80.702 114 17 5 8156 8265 480985394 480985506 5.320000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G424100 chr7D 544777167 544785432 8265 False 7112.000000 9446 100.000000 1 8266 2 chr7D.!!$F3 8265
1 TraesCS7D01G424100 chr7D 544849323 544850602 1279 False 2091.000000 2091 96.172000 925 2202 1 chr7D.!!$F1 1277
2 TraesCS7D01G424100 chr7D 486239696 486241587 1891 True 1042.000000 1812 90.070000 993 2810 2 chr7D.!!$R1 1817
3 TraesCS7D01G424100 chr7B 588252770 588264410 11640 False 1982.833333 2706 94.597667 925 8266 6 chr7B.!!$F5 7341
4 TraesCS7D01G424100 chr7B 514061415 514062892 1477 True 1701.000000 1701 87.475000 993 2478 1 chr7B.!!$R2 1485
5 TraesCS7D01G424100 chr7B 588236263 588246106 9843 False 1212.142857 2728 91.669286 925 8266 7 chr7B.!!$F4 7341
6 TraesCS7D01G424100 chr7B 588280035 588283436 3401 False 1105.000000 1912 92.540000 3313 8213 4 chr7B.!!$F6 4900
7 TraesCS7D01G424100 chr7B 588082059 588089474 7415 False 1018.250000 3136 92.895000 264 7523 8 chr7B.!!$F3 7259
8 TraesCS7D01G424100 chr7B 443326343 443327535 1192 True 948.000000 948 81.121000 1001 2208 1 chr7B.!!$R1 1207
9 TraesCS7D01G424100 chr3D 94803745 94804952 1207 True 2026.000000 2026 96.940000 3908 5115 1 chr3D.!!$R2 1207
10 TraesCS7D01G424100 chr3D 582096275 582097483 1208 False 1988.000000 1988 96.361000 3908 5115 1 chr3D.!!$F2 1207
11 TraesCS7D01G424100 chr3D 319046221 319047421 1200 True 1840.000000 1840 94.338000 3908 5106 1 chr3D.!!$R4 1198
12 TraesCS7D01G424100 chr5A 71471861 71473068 1207 False 1997.000000 1997 96.523000 3909 5115 1 chr5A.!!$F1 1206
13 TraesCS7D01G424100 chr1D 292524675 292525842 1167 True 1951.000000 1951 96.832000 3909 5075 1 chr1D.!!$R1 1166
14 TraesCS7D01G424100 chr7A 626572330 626574014 1684 False 1265.500000 1917 95.442500 1396 3004 2 chr7A.!!$F3 1608
15 TraesCS7D01G424100 chr7A 626603284 626609262 5978 False 966.142857 1940 94.622143 1396 7644 7 chr7A.!!$F4 6248
16 TraesCS7D01G424100 chr7A 626597334 626598111 777 False 841.000000 841 86.633000 630 1398 1 chr7A.!!$F1 768
17 TraesCS7D01G424100 chr7A 554855062 554855699 637 True 747.000000 747 87.865000 6880 7523 1 chr7A.!!$R1 643
18 TraesCS7D01G424100 chr7A 626566404 626567141 737 False 395.150000 719 91.822000 630 1398 2 chr7A.!!$F2 768
19 TraesCS7D01G424100 chr2A 598624086 598625298 1212 False 1929.000000 1929 95.383000 3905 5115 1 chr2A.!!$F1 1210
20 TraesCS7D01G424100 chr2D 476316375 476317584 1209 True 1917.000000 1917 95.289000 3907 5115 1 chr2D.!!$R1 1208
21 TraesCS7D01G424100 chr3A 690717872 690719078 1206 True 1886.000000 1886 94.872000 3908 5115 1 chr3A.!!$R1 1207
22 TraesCS7D01G424100 chr6A 596508969 596510185 1216 False 1858.000000 1858 94.267000 3900 5115 1 chr6A.!!$F1 1215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 198 0.036105 CAGGCACACCAGCATCACTA 60.036 55.000 0.00 0.00 39.06 2.74 F
324 325 0.168788 TACTTACAAGTCGGACGGCG 59.831 55.000 4.80 4.80 40.37 6.46 F
1045 3280 0.249489 CGGGCTACCAGCTGACATAC 60.249 60.000 17.39 2.02 41.99 2.39 F
1249 3484 0.529992 CGAACGGAATGCCTACTCCC 60.530 60.000 0.00 0.00 0.00 4.30 F
2738 5901 2.170166 TCCTGTGAAAATGGGCATGTC 58.830 47.619 0.00 0.00 0.00 3.06 F
3004 6305 0.310854 GAAAGTTTGCACGGAGGTGG 59.689 55.000 0.00 0.00 44.54 4.61 F
4471 8205 0.883370 AACAAAAGGGACGAGCGGAC 60.883 55.000 0.00 0.00 0.00 4.79 F
5702 9441 2.798364 GGAGGAACCCTAGCGGAGC 61.798 68.421 4.45 0.00 46.23 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1407 3643 0.318614 GAACCCCGTCGTCGTTTACA 60.319 55.000 0.71 0.00 35.01 2.41 R
1842 4078 3.319137 TGTTCAGGATCCAAACTCTCG 57.681 47.619 23.05 1.37 0.00 4.04 R
2620 4860 0.180642 TGTAAAGGGTGGACGCACAA 59.819 50.000 0.00 0.00 0.00 3.33 R
2978 6142 2.031191 TCCGTGCAAACTTTCTCGAAAC 59.969 45.455 0.00 0.00 0.00 2.78 R
4455 8189 1.004918 CTGTCCGCTCGTCCCTTTT 60.005 57.895 0.00 0.00 0.00 2.27 R
5684 9423 2.798364 GCTCCGCTAGGGTTCCTCC 61.798 68.421 6.02 0.00 38.33 4.30 R
5726 9465 0.321671 TAGCTGGTTGTGAGAGCCAC 59.678 55.000 0.00 0.00 45.88 5.01 R
7889 12866 0.322456 TTGGTACATGTCCAGGCTGC 60.322 55.000 9.56 0.00 39.30 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.078891 GATTGTTCCAGAGGCTTCCTT 57.921 47.619 0.00 0.00 31.76 3.36
21 22 3.425659 GATTGTTCCAGAGGCTTCCTTT 58.574 45.455 0.00 0.00 31.76 3.11
57 58 9.993454 TCAACAATGAGATTATGAGAGATAAGG 57.007 33.333 0.00 0.00 0.00 2.69
58 59 9.993454 CAACAATGAGATTATGAGAGATAAGGA 57.007 33.333 0.00 0.00 0.00 3.36
65 66 8.642935 AGATTATGAGAGATAAGGATGAACGA 57.357 34.615 0.00 0.00 0.00 3.85
66 67 8.739039 AGATTATGAGAGATAAGGATGAACGAG 58.261 37.037 0.00 0.00 0.00 4.18
67 68 5.720371 ATGAGAGATAAGGATGAACGAGG 57.280 43.478 0.00 0.00 0.00 4.63
68 69 3.891977 TGAGAGATAAGGATGAACGAGGG 59.108 47.826 0.00 0.00 0.00 4.30
71 72 4.586841 AGAGATAAGGATGAACGAGGGAAG 59.413 45.833 0.00 0.00 0.00 3.46
72 73 3.643792 AGATAAGGATGAACGAGGGAAGG 59.356 47.826 0.00 0.00 0.00 3.46
73 74 0.253327 AAGGATGAACGAGGGAAGGC 59.747 55.000 0.00 0.00 0.00 4.35
74 75 1.153147 GGATGAACGAGGGAAGGCC 60.153 63.158 0.00 0.00 0.00 5.19
75 76 1.627297 GGATGAACGAGGGAAGGCCT 61.627 60.000 0.00 0.00 0.00 5.19
76 77 1.120530 GATGAACGAGGGAAGGCCTA 58.879 55.000 5.16 0.00 0.00 3.93
77 78 1.485066 GATGAACGAGGGAAGGCCTAA 59.515 52.381 5.16 0.00 0.00 2.69
79 80 1.485066 TGAACGAGGGAAGGCCTAATC 59.515 52.381 5.16 0.00 0.00 1.75
80 81 1.763545 GAACGAGGGAAGGCCTAATCT 59.236 52.381 5.16 3.05 0.00 2.40
81 82 1.123928 ACGAGGGAAGGCCTAATCTG 58.876 55.000 5.16 0.00 0.00 2.90
84 85 1.212935 GAGGGAAGGCCTAATCTGCAA 59.787 52.381 5.16 0.00 0.00 4.08
89 90 3.181483 GGAAGGCCTAATCTGCAAATGTG 60.181 47.826 5.16 0.00 0.00 3.21
90 91 2.381911 AGGCCTAATCTGCAAATGTGG 58.618 47.619 1.29 0.00 0.00 4.17
91 92 2.025037 AGGCCTAATCTGCAAATGTGGA 60.025 45.455 1.29 0.00 0.00 4.02
94 95 2.954318 CCTAATCTGCAAATGTGGAGGG 59.046 50.000 4.35 0.00 43.13 4.30
95 96 2.905415 AATCTGCAAATGTGGAGGGA 57.095 45.000 4.35 0.00 43.13 4.20
96 97 2.431954 ATCTGCAAATGTGGAGGGAG 57.568 50.000 4.35 0.00 43.13 4.30
97 98 0.329261 TCTGCAAATGTGGAGGGAGG 59.671 55.000 4.35 0.00 43.13 4.30
98 99 0.038744 CTGCAAATGTGGAGGGAGGT 59.961 55.000 0.00 0.00 39.43 3.85
99 100 0.251297 TGCAAATGTGGAGGGAGGTG 60.251 55.000 0.00 0.00 0.00 4.00
100 101 1.598701 GCAAATGTGGAGGGAGGTGC 61.599 60.000 0.00 0.00 0.00 5.01
101 102 1.002134 AAATGTGGAGGGAGGTGCG 60.002 57.895 0.00 0.00 0.00 5.34
102 103 2.484287 AAATGTGGAGGGAGGTGCGG 62.484 60.000 0.00 0.00 0.00 5.69
106 107 2.446036 GGAGGGAGGTGCGGGTAT 60.446 66.667 0.00 0.00 0.00 2.73
107 108 2.508751 GGAGGGAGGTGCGGGTATC 61.509 68.421 0.00 0.00 0.00 2.24
108 109 1.457831 GAGGGAGGTGCGGGTATCT 60.458 63.158 0.00 0.00 0.00 1.98
110 111 0.620700 AGGGAGGTGCGGGTATCTTT 60.621 55.000 0.00 0.00 0.00 2.52
112 113 1.379527 GGAGGTGCGGGTATCTTTTG 58.620 55.000 0.00 0.00 0.00 2.44
113 114 0.733150 GAGGTGCGGGTATCTTTTGC 59.267 55.000 0.00 0.00 0.00 3.68
114 115 0.037590 AGGTGCGGGTATCTTTTGCA 59.962 50.000 0.00 0.00 0.00 4.08
118 119 3.584834 GTGCGGGTATCTTTTGCAAAAT 58.415 40.909 24.06 13.48 37.30 1.82
120 121 3.993081 TGCGGGTATCTTTTGCAAAATTG 59.007 39.130 24.06 14.06 31.69 2.32
122 123 3.370672 CGGGTATCTTTTGCAAAATTGGC 59.629 43.478 24.06 14.48 0.00 4.52
123 124 4.322567 GGGTATCTTTTGCAAAATTGGCA 58.677 39.130 24.06 7.45 40.00 4.92
124 125 4.943093 GGGTATCTTTTGCAAAATTGGCAT 59.057 37.500 24.06 13.27 41.58 4.40
125 126 6.112058 GGGTATCTTTTGCAAAATTGGCATA 58.888 36.000 24.06 12.43 41.58 3.14
126 127 6.258507 GGGTATCTTTTGCAAAATTGGCATAG 59.741 38.462 24.06 10.59 41.58 2.23
127 128 6.818142 GGTATCTTTTGCAAAATTGGCATAGT 59.182 34.615 24.06 6.29 41.58 2.12
128 129 7.334171 GGTATCTTTTGCAAAATTGGCATAGTT 59.666 33.333 24.06 8.25 41.58 2.24
129 130 7.748691 ATCTTTTGCAAAATTGGCATAGTTT 57.251 28.000 24.06 1.36 41.58 2.66
130 131 6.957150 TCTTTTGCAAAATTGGCATAGTTTG 58.043 32.000 24.06 8.57 41.58 2.93
144 145 5.794687 CATAGTTTGCTTTGTATCCGTCA 57.205 39.130 0.00 0.00 0.00 4.35
145 146 5.799960 CATAGTTTGCTTTGTATCCGTCAG 58.200 41.667 0.00 0.00 0.00 3.51
146 147 4.002906 AGTTTGCTTTGTATCCGTCAGA 57.997 40.909 0.00 0.00 0.00 3.27
147 148 4.579869 AGTTTGCTTTGTATCCGTCAGAT 58.420 39.130 0.00 0.00 39.15 2.90
148 149 5.730550 AGTTTGCTTTGTATCCGTCAGATA 58.269 37.500 0.00 0.00 36.33 1.98
150 151 7.497595 AGTTTGCTTTGTATCCGTCAGATATA 58.502 34.615 0.00 0.00 39.66 0.86
151 152 7.653713 AGTTTGCTTTGTATCCGTCAGATATAG 59.346 37.037 0.00 0.00 39.66 1.31
152 153 6.894339 TGCTTTGTATCCGTCAGATATAGA 57.106 37.500 0.00 0.00 39.66 1.98
154 155 7.539436 TGCTTTGTATCCGTCAGATATAGATC 58.461 38.462 0.00 0.00 39.66 2.75
155 156 6.689241 GCTTTGTATCCGTCAGATATAGATCG 59.311 42.308 0.00 0.00 39.66 3.69
156 157 6.679327 TTGTATCCGTCAGATATAGATCGG 57.321 41.667 0.00 0.00 39.66 4.18
162 163 4.603231 GTCAGATATAGATCGGACGGTC 57.397 50.000 13.57 0.00 44.04 4.79
164 165 5.417811 GTCAGATATAGATCGGACGGTCTA 58.582 45.833 16.04 16.04 44.04 2.59
165 166 6.050432 GTCAGATATAGATCGGACGGTCTAT 58.950 44.000 25.24 25.24 44.04 1.98
167 168 7.874016 GTCAGATATAGATCGGACGGTCTATAT 59.126 40.741 31.81 31.81 46.01 0.86
168 169 8.430431 TCAGATATAGATCGGACGGTCTATATT 58.570 37.037 31.81 23.25 44.58 1.28
170 171 9.709495 AGATATAGATCGGACGGTCTATATTAC 57.291 37.037 31.81 24.40 44.58 1.89
171 172 9.486497 GATATAGATCGGACGGTCTATATTACA 57.514 37.037 31.81 17.64 44.58 2.41
172 173 9.842775 ATATAGATCGGACGGTCTATATTACAA 57.157 33.333 28.56 14.88 43.21 2.41
173 174 6.497785 AGATCGGACGGTCTATATTACAAG 57.502 41.667 5.58 0.00 0.00 3.16
174 175 6.236409 AGATCGGACGGTCTATATTACAAGA 58.764 40.000 5.58 0.00 0.00 3.02
175 176 6.885376 AGATCGGACGGTCTATATTACAAGAT 59.115 38.462 5.58 0.00 0.00 2.40
176 177 6.250344 TCGGACGGTCTATATTACAAGATG 57.750 41.667 8.23 0.00 0.00 2.90
177 178 5.182570 TCGGACGGTCTATATTACAAGATGG 59.817 44.000 8.23 0.00 0.00 3.51
178 179 5.169295 GGACGGTCTATATTACAAGATGGC 58.831 45.833 8.23 0.00 0.00 4.40
180 181 5.784177 ACGGTCTATATTACAAGATGGCAG 58.216 41.667 0.00 0.00 0.00 4.85
181 182 5.171476 CGGTCTATATTACAAGATGGCAGG 58.829 45.833 0.00 0.00 0.00 4.85
182 183 4.938226 GGTCTATATTACAAGATGGCAGGC 59.062 45.833 0.00 0.00 0.00 4.85
183 184 5.513094 GGTCTATATTACAAGATGGCAGGCA 60.513 44.000 0.00 0.00 0.00 4.75
184 185 5.409826 GTCTATATTACAAGATGGCAGGCAC 59.590 44.000 0.00 0.00 0.00 5.01
187 188 0.322456 TACAAGATGGCAGGCACACC 60.322 55.000 0.00 0.00 0.00 4.16
188 189 1.604308 CAAGATGGCAGGCACACCA 60.604 57.895 0.00 0.00 41.01 4.17
189 190 1.303888 AAGATGGCAGGCACACCAG 60.304 57.895 0.00 0.00 40.12 4.00
196 197 1.303074 CAGGCACACCAGCATCACT 60.303 57.895 0.00 0.00 39.06 3.41
197 198 0.036105 CAGGCACACCAGCATCACTA 60.036 55.000 0.00 0.00 39.06 2.74
199 200 0.804989 GGCACACCAGCATCACTAAC 59.195 55.000 0.00 0.00 35.83 2.34
200 201 1.611673 GGCACACCAGCATCACTAACT 60.612 52.381 0.00 0.00 35.83 2.24
201 202 1.734465 GCACACCAGCATCACTAACTC 59.266 52.381 0.00 0.00 0.00 3.01
202 203 1.995484 CACACCAGCATCACTAACTCG 59.005 52.381 0.00 0.00 0.00 4.18
204 205 2.497675 ACACCAGCATCACTAACTCGAT 59.502 45.455 0.00 0.00 0.00 3.59
205 206 3.055819 ACACCAGCATCACTAACTCGATT 60.056 43.478 0.00 0.00 0.00 3.34
206 207 3.935203 CACCAGCATCACTAACTCGATTT 59.065 43.478 0.00 0.00 0.00 2.17
207 208 4.393062 CACCAGCATCACTAACTCGATTTT 59.607 41.667 0.00 0.00 0.00 1.82
208 209 5.003804 ACCAGCATCACTAACTCGATTTTT 58.996 37.500 0.00 0.00 0.00 1.94
231 232 6.423776 TTTAAGGGTAGAGAAAACTTCGGA 57.576 37.500 0.00 0.00 34.02 4.55
236 237 6.304624 AGGGTAGAGAAAACTTCGGAAAAAT 58.695 36.000 0.00 0.00 34.02 1.82
237 238 6.430308 AGGGTAGAGAAAACTTCGGAAAAATC 59.570 38.462 0.00 0.00 34.02 2.17
238 239 6.430308 GGGTAGAGAAAACTTCGGAAAAATCT 59.570 38.462 0.00 0.00 34.02 2.40
239 240 7.605309 GGGTAGAGAAAACTTCGGAAAAATCTA 59.395 37.037 0.00 0.00 34.02 1.98
240 241 8.996271 GGTAGAGAAAACTTCGGAAAAATCTAA 58.004 33.333 0.00 0.00 34.02 2.10
320 321 7.474398 AAAGAAAACTACTTACAAGTCGGAC 57.526 36.000 0.00 0.00 40.37 4.79
323 324 1.200948 ACTACTTACAAGTCGGACGGC 59.799 52.381 1.89 0.00 40.37 5.68
324 325 0.168788 TACTTACAAGTCGGACGGCG 59.831 55.000 4.80 4.80 40.37 6.46
325 326 1.080974 CTTACAAGTCGGACGGCGT 60.081 57.895 14.65 14.65 0.00 5.68
327 328 3.902162 TACAAGTCGGACGGCGTGC 62.902 63.158 21.19 21.74 32.70 5.34
345 351 3.617824 CGCATCGGATCGTTCCAG 58.382 61.111 12.88 5.82 42.74 3.86
347 353 2.589492 GCATCGGATCGTTCCAGCG 61.589 63.158 12.88 1.19 42.74 5.18
355 361 1.087202 ATCGTTCCAGCGCGCAATTA 61.087 50.000 35.10 12.88 0.00 1.40
381 387 2.270850 GTGCCATGCCCGGTCTTA 59.729 61.111 0.00 0.00 0.00 2.10
382 388 1.377987 GTGCCATGCCCGGTCTTAA 60.378 57.895 0.00 0.00 0.00 1.85
383 389 1.077787 TGCCATGCCCGGTCTTAAG 60.078 57.895 0.00 0.00 0.00 1.85
384 390 1.823899 GCCATGCCCGGTCTTAAGG 60.824 63.158 0.00 0.00 0.00 2.69
386 392 1.823899 CATGCCCGGTCTTAAGGCC 60.824 63.158 16.60 16.60 46.55 5.19
387 393 2.001269 ATGCCCGGTCTTAAGGCCT 61.001 57.895 23.35 0.00 46.55 5.19
388 394 0.693092 ATGCCCGGTCTTAAGGCCTA 60.693 55.000 23.35 7.96 46.55 3.93
389 395 1.145598 GCCCGGTCTTAAGGCCTAC 59.854 63.158 23.35 9.11 41.00 3.18
390 396 1.335882 GCCCGGTCTTAAGGCCTACT 61.336 60.000 23.35 0.00 41.00 2.57
392 398 1.962100 CCCGGTCTTAAGGCCTACTAG 59.038 57.143 23.35 7.70 0.00 2.57
393 399 1.340568 CCGGTCTTAAGGCCTACTAGC 59.659 57.143 23.35 0.60 0.00 3.42
394 400 2.308690 CGGTCTTAAGGCCTACTAGCT 58.691 52.381 23.35 0.00 0.00 3.32
396 402 3.132467 CGGTCTTAAGGCCTACTAGCTTT 59.868 47.826 23.35 0.00 35.97 3.51
397 403 4.695396 GGTCTTAAGGCCTACTAGCTTTC 58.305 47.826 19.23 0.00 33.62 2.62
404 410 2.236395 GGCCTACTAGCTTTCAAGGTCA 59.764 50.000 0.00 0.00 37.92 4.02
459 466 2.580589 CCCTTTTAATCGCGTGTTGTG 58.419 47.619 5.77 0.00 0.00 3.33
460 467 2.031508 CCCTTTTAATCGCGTGTTGTGT 60.032 45.455 5.77 0.00 0.00 3.72
462 469 2.563670 TTTAATCGCGTGTTGTGTCG 57.436 45.000 5.77 0.00 0.00 4.35
463 470 1.768510 TTAATCGCGTGTTGTGTCGA 58.231 45.000 5.77 0.00 35.34 4.20
464 471 1.054574 TAATCGCGTGTTGTGTCGAC 58.945 50.000 9.11 9.11 33.59 4.20
465 472 1.554042 AATCGCGTGTTGTGTCGACC 61.554 55.000 14.12 5.06 33.59 4.79
467 474 2.927618 CGCGTGTTGTGTCGACCTG 61.928 63.158 14.12 0.00 0.00 4.00
468 475 1.881252 GCGTGTTGTGTCGACCTGT 60.881 57.895 14.12 0.00 0.00 4.00
469 476 1.818221 GCGTGTTGTGTCGACCTGTC 61.818 60.000 14.12 2.14 0.00 3.51
495 569 2.047443 TACCGGGCCAAAATTCCGC 61.047 57.895 6.32 0.00 42.18 5.54
545 619 4.394712 CACACCCAGAGACCCCGC 62.395 72.222 0.00 0.00 0.00 6.13
989 3222 5.284861 TCTAAAGCTGTGGTGTTTGTCTA 57.715 39.130 0.00 0.00 0.00 2.59
1022 3257 2.376518 TGGAAGTTCCAGCTCCAGATTT 59.623 45.455 21.05 0.00 42.67 2.17
1045 3280 0.249489 CGGGCTACCAGCTGACATAC 60.249 60.000 17.39 2.02 41.99 2.39
1187 3422 6.027482 AGACCCCCTGTTTACTCTATTGTAA 58.973 40.000 0.00 0.00 0.00 2.41
1239 3474 1.546961 ACAGTCTCTCCGAACGGAAT 58.453 50.000 16.56 0.00 44.66 3.01
1249 3484 0.529992 CGAACGGAATGCCTACTCCC 60.530 60.000 0.00 0.00 0.00 4.30
1407 3643 3.511146 CCATGGAGCATGTTAAACCTGTT 59.489 43.478 5.56 0.00 39.94 3.16
1959 4195 3.511540 TGAGAGGGATAGGTGAATATGCG 59.488 47.826 0.00 0.00 0.00 4.73
2281 4517 6.315891 GCTTCTCACAGAATAAGAGAATTGCT 59.684 38.462 0.00 0.00 44.62 3.91
2610 4850 5.578727 AGTCTTGAGACGAATGCAAGATAAC 59.421 40.000 14.18 6.32 46.55 1.89
2611 4851 5.578727 GTCTTGAGACGAATGCAAGATAACT 59.421 40.000 14.18 0.00 46.55 2.24
2612 4852 5.807520 TCTTGAGACGAATGCAAGATAACTC 59.192 40.000 0.00 0.00 42.03 3.01
2613 4853 5.330455 TGAGACGAATGCAAGATAACTCT 57.670 39.130 0.00 0.00 0.00 3.24
2614 4854 5.344066 TGAGACGAATGCAAGATAACTCTC 58.656 41.667 0.00 0.00 0.00 3.20
2615 4855 5.126222 TGAGACGAATGCAAGATAACTCTCT 59.874 40.000 0.00 0.00 0.00 3.10
2617 4857 7.101652 AGACGAATGCAAGATAACTCTCTTA 57.898 36.000 0.00 0.00 33.73 2.10
2618 4858 6.975772 AGACGAATGCAAGATAACTCTCTTAC 59.024 38.462 0.00 0.00 33.73 2.34
2619 4859 6.868622 ACGAATGCAAGATAACTCTCTTACT 58.131 36.000 0.00 0.00 33.73 2.24
2620 4860 7.324178 ACGAATGCAAGATAACTCTCTTACTT 58.676 34.615 0.00 0.00 33.73 2.24
2687 5849 8.475331 ACTCCACACGATAACTATAAAACAAG 57.525 34.615 0.00 0.00 0.00 3.16
2695 5857 9.880157 ACGATAACTATAAAACAAGCTAGGAAA 57.120 29.630 0.00 0.00 0.00 3.13
2738 5901 2.170166 TCCTGTGAAAATGGGCATGTC 58.830 47.619 0.00 0.00 0.00 3.06
2891 6055 3.311322 TGTGTGCTACAGAAAGGAAAACG 59.689 43.478 0.00 0.00 33.42 3.60
2978 6142 8.865001 TGTTTTGTTTTCGTAAAAGGATTTCTG 58.135 29.630 0.00 0.00 37.28 3.02
3004 6305 0.310854 GAAAGTTTGCACGGAGGTGG 59.689 55.000 0.00 0.00 44.54 4.61
3068 6369 9.915629 TCGTATGTGCTTTTTAAATGGTATTTT 57.084 25.926 0.00 0.00 0.00 1.82
3187 6488 7.540745 CCGGGTAAGAAATTCATGTAACAAAAG 59.459 37.037 0.00 0.00 0.00 2.27
3320 7042 5.871524 TGCTGTTTCAATTTGTGCAGTTTTA 59.128 32.000 14.12 3.23 0.00 1.52
3378 7100 7.704472 ACAATATTATACGCATTTTGGTGTTGG 59.296 33.333 0.00 0.00 32.89 3.77
3657 7382 5.450592 TGCATTAATTCTTGTGAACTGCA 57.549 34.783 0.00 0.00 35.90 4.41
3822 7553 8.121305 TGTTTAACATGGAGCTGAATTATTGT 57.879 30.769 0.00 0.00 0.00 2.71
3891 7624 5.186409 AGGAATGCTTGCAATCATTGTAACT 59.814 36.000 28.03 18.15 33.49 2.24
3965 7698 2.733026 GCATCAAACCACAAGCATTCAC 59.267 45.455 0.00 0.00 0.00 3.18
3966 7699 3.319755 CATCAAACCACAAGCATTCACC 58.680 45.455 0.00 0.00 0.00 4.02
3967 7700 1.336440 TCAAACCACAAGCATTCACCG 59.664 47.619 0.00 0.00 0.00 4.94
4007 7741 1.675972 AACACACGCACACACCCAA 60.676 52.632 0.00 0.00 0.00 4.12
4471 8205 0.883370 AACAAAAGGGACGAGCGGAC 60.883 55.000 0.00 0.00 0.00 4.79
4514 8248 4.760047 CAACCCCCAGCGTCGAGG 62.760 72.222 0.00 0.00 0.00 4.63
5701 9440 3.539842 GGAGGAACCCTAGCGGAG 58.460 66.667 4.45 0.00 31.76 4.63
5702 9441 2.798364 GGAGGAACCCTAGCGGAGC 61.798 68.421 4.45 0.00 46.23 4.70
5725 9464 4.404098 GCTCGGGGGAGCCGAAAA 62.404 66.667 4.78 0.00 42.05 2.29
5726 9465 2.125106 CTCGGGGGAGCCGAAAAG 60.125 66.667 0.00 0.00 39.23 2.27
5727 9466 2.926242 TCGGGGGAGCCGAAAAGT 60.926 61.111 0.00 0.00 36.73 2.66
5728 9467 2.746277 CGGGGGAGCCGAAAAGTG 60.746 66.667 0.00 0.00 0.00 3.16
5729 9468 2.361230 GGGGGAGCCGAAAAGTGG 60.361 66.667 0.00 0.00 0.00 4.00
5743 9482 3.660621 GTGGCTCTCACAACCAGC 58.339 61.111 0.00 0.00 45.39 4.85
5744 9483 1.072159 GTGGCTCTCACAACCAGCT 59.928 57.895 0.00 0.00 45.39 4.24
5745 9484 0.321671 GTGGCTCTCACAACCAGCTA 59.678 55.000 0.00 0.00 45.39 3.32
5746 9485 0.321671 TGGCTCTCACAACCAGCTAC 59.678 55.000 0.00 0.00 33.38 3.58
5747 9486 0.610687 GGCTCTCACAACCAGCTACT 59.389 55.000 0.00 0.00 33.38 2.57
5748 9487 1.674221 GGCTCTCACAACCAGCTACTG 60.674 57.143 0.00 0.00 33.38 2.74
5759 9498 4.663444 GCTACTGGCTATGCTCGG 57.337 61.111 0.00 0.00 38.06 4.63
5760 9499 1.666234 GCTACTGGCTATGCTCGGC 60.666 63.158 0.00 0.00 38.06 5.54
5761 9500 1.742146 CTACTGGCTATGCTCGGCA 59.258 57.895 1.01 1.01 44.86 5.69
5774 9513 4.811555 TGCTCGGCATATGTTTATTGTC 57.188 40.909 4.29 0.00 31.71 3.18
5955 9698 9.667107 TTATATTCTGGTCACTTTTCTGGTTAG 57.333 33.333 0.00 0.00 0.00 2.34
5956 9699 5.367945 TTCTGGTCACTTTTCTGGTTAGT 57.632 39.130 0.00 0.00 0.00 2.24
5957 9700 5.367945 TCTGGTCACTTTTCTGGTTAGTT 57.632 39.130 0.00 0.00 0.00 2.24
5976 9719 3.084786 GTTGCTAGCTCATTTCCCTGTT 58.915 45.455 17.23 0.00 0.00 3.16
6090 10004 5.641209 CCTTTTCACATGAGAGGTAAGAGTG 59.359 44.000 0.00 0.00 0.00 3.51
6176 10090 2.620627 CCCATGTGAAAAGAGGGGGTAC 60.621 54.545 0.00 0.00 35.83 3.34
6181 10095 0.107800 GAAAAGAGGGGGTACGAGGC 60.108 60.000 0.00 0.00 0.00 4.70
6226 10140 8.354711 TCTCATGTTACATATATGACCCTCTC 57.645 38.462 19.63 3.55 0.00 3.20
6227 10141 8.173412 TCTCATGTTACATATATGACCCTCTCT 58.827 37.037 19.63 0.00 0.00 3.10
6238 10154 4.982241 TGACCCTCTCTCTCATTTTTGT 57.018 40.909 0.00 0.00 0.00 2.83
6967 11841 1.072159 GAGCCTCCCATGGAATCCG 59.928 63.158 15.22 0.00 0.00 4.18
6991 11865 3.119245 CCTTGTTCCATGCTGAATTCTGG 60.119 47.826 13.50 9.38 0.00 3.86
7010 11884 4.053295 CTGGTTGCATTTTTCTGTTCTGG 58.947 43.478 0.00 0.00 0.00 3.86
7146 12031 8.472007 AGTCATTTGTAATTTAACCCTGTGAA 57.528 30.769 0.00 0.00 0.00 3.18
7246 12137 3.067601 TCGACTTCTGCAAGTACAAGTGA 59.932 43.478 0.00 0.00 43.37 3.41
7294 12185 8.310382 CCAAAGAAGAAGATCAAGAACTAGAGA 58.690 37.037 0.00 0.00 0.00 3.10
7315 12206 1.818674 GCCACCAGTCAGTTTAATGGG 59.181 52.381 0.00 0.00 37.13 4.00
7342 12233 2.010145 AAATCCATCGTCGTGTCAGG 57.990 50.000 0.00 0.00 0.00 3.86
7367 12261 3.784701 ATGCTTCGTTATCGTCTCTGT 57.215 42.857 0.00 0.00 38.33 3.41
7541 12451 4.335400 TGTCTGTGCAGAAGAATGTGTA 57.665 40.909 3.19 0.00 39.48 2.90
7581 12493 6.994421 AGAGTTTTTATCCACCACCAAATT 57.006 33.333 0.00 0.00 0.00 1.82
7597 12509 0.332972 AATTGAAGTCCTCCTGGGCC 59.667 55.000 0.00 0.00 39.18 5.80
7598 12510 0.551131 ATTGAAGTCCTCCTGGGCCT 60.551 55.000 4.53 0.00 39.18 5.19
7634 12547 4.407621 TCCACGATCCCAACAACTACATAT 59.592 41.667 0.00 0.00 0.00 1.78
7635 12548 5.599242 TCCACGATCCCAACAACTACATATA 59.401 40.000 0.00 0.00 0.00 0.86
7644 12557 8.713971 TCCCAACAACTACATATACTCATGATT 58.286 33.333 0.00 0.00 0.00 2.57
7645 12558 8.777413 CCCAACAACTACATATACTCATGATTG 58.223 37.037 0.00 0.00 0.00 2.67
7646 12559 9.330063 CCAACAACTACATATACTCATGATTGT 57.670 33.333 0.00 0.00 34.54 2.71
7648 12561 8.370493 ACAACTACATATACTCATGATTGTGC 57.630 34.615 0.00 0.00 33.24 4.57
7649 12562 8.206867 ACAACTACATATACTCATGATTGTGCT 58.793 33.333 0.00 0.00 33.24 4.40
7795 12755 6.015772 GCAGGGACATGTACCTTTTTCTTTTA 60.016 38.462 28.13 0.00 42.68 1.52
7834 12810 1.612463 GGTACAGCCGGGACATAGTAG 59.388 57.143 2.18 0.00 0.00 2.57
7835 12811 2.579873 GTACAGCCGGGACATAGTAGA 58.420 52.381 2.18 0.00 0.00 2.59
7836 12812 2.154567 ACAGCCGGGACATAGTAGAA 57.845 50.000 2.18 0.00 0.00 2.10
7837 12813 2.032620 ACAGCCGGGACATAGTAGAAG 58.967 52.381 2.18 0.00 0.00 2.85
7857 12833 7.497925 AGAAGAAAAAGAAATAGCTGACGTT 57.502 32.000 0.00 0.00 0.00 3.99
7859 12835 5.452777 AGAAAAAGAAATAGCTGACGTTGC 58.547 37.500 0.00 6.40 0.00 4.17
7867 12843 2.169832 AGCTGACGTTGCACATAGTT 57.830 45.000 15.09 0.00 0.00 2.24
7872 12848 5.008217 AGCTGACGTTGCACATAGTTAAAAA 59.992 36.000 15.09 0.00 0.00 1.94
7895 12872 5.488262 AATCTTAAAATTTGGTGCAGCCT 57.512 34.783 14.36 0.00 38.35 4.58
7986 12963 9.180678 GACATCTACACAGGTTTAACATTTTTG 57.819 33.333 0.00 0.00 0.00 2.44
7994 12971 9.260002 CACAGGTTTAACATTTTTGAGCTTAAT 57.740 29.630 0.00 0.00 0.00 1.40
8005 12982 9.868389 CATTTTTGAGCTTAATCAAACCTTTTC 57.132 29.630 4.15 0.00 46.12 2.29
8007 12984 6.723298 TTGAGCTTAATCAAACCTTTTCCA 57.277 33.333 0.00 0.00 36.28 3.53
8100 13084 6.212235 TCAAGCGCTTGATTAACATTTTTCA 58.788 32.000 41.19 19.49 43.90 2.69
8153 13138 9.139174 CATGGTCAACATTTTTCCTATAAACAC 57.861 33.333 0.00 0.00 37.84 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.797177 AGGAAGCCTCTGGAACAATC 57.203 50.000 0.00 0.00 38.70 2.67
32 33 9.993454 TCCTTATCTCTCATAATCTCATTGTTG 57.007 33.333 0.00 0.00 0.00 3.33
39 40 8.735315 TCGTTCATCCTTATCTCTCATAATCTC 58.265 37.037 0.00 0.00 0.00 2.75
40 41 8.642935 TCGTTCATCCTTATCTCTCATAATCT 57.357 34.615 0.00 0.00 0.00 2.40
41 42 7.973388 CCTCGTTCATCCTTATCTCTCATAATC 59.027 40.741 0.00 0.00 0.00 1.75
42 43 7.093552 CCCTCGTTCATCCTTATCTCTCATAAT 60.094 40.741 0.00 0.00 0.00 1.28
45 46 4.526262 CCCTCGTTCATCCTTATCTCTCAT 59.474 45.833 0.00 0.00 0.00 2.90
47 48 4.145807 TCCCTCGTTCATCCTTATCTCTC 58.854 47.826 0.00 0.00 0.00 3.20
48 49 4.186077 TCCCTCGTTCATCCTTATCTCT 57.814 45.455 0.00 0.00 0.00 3.10
52 53 2.104963 GCCTTCCCTCGTTCATCCTTAT 59.895 50.000 0.00 0.00 0.00 1.73
53 54 1.485066 GCCTTCCCTCGTTCATCCTTA 59.515 52.381 0.00 0.00 0.00 2.69
54 55 0.253327 GCCTTCCCTCGTTCATCCTT 59.747 55.000 0.00 0.00 0.00 3.36
55 56 1.627297 GGCCTTCCCTCGTTCATCCT 61.627 60.000 0.00 0.00 0.00 3.24
56 57 1.153147 GGCCTTCCCTCGTTCATCC 60.153 63.158 0.00 0.00 0.00 3.51
57 58 1.120530 TAGGCCTTCCCTCGTTCATC 58.879 55.000 12.58 0.00 44.96 2.92
58 59 1.580059 TTAGGCCTTCCCTCGTTCAT 58.420 50.000 12.58 0.00 44.96 2.57
60 61 1.763545 AGATTAGGCCTTCCCTCGTTC 59.236 52.381 12.58 0.00 44.96 3.95
62 63 1.123928 CAGATTAGGCCTTCCCTCGT 58.876 55.000 12.58 0.00 44.96 4.18
63 64 0.250081 GCAGATTAGGCCTTCCCTCG 60.250 60.000 12.58 0.00 44.96 4.63
66 67 2.143876 TTTGCAGATTAGGCCTTCCC 57.856 50.000 12.58 0.00 0.00 3.97
67 68 3.026694 ACATTTGCAGATTAGGCCTTCC 58.973 45.455 12.58 0.00 0.00 3.46
68 69 3.181483 CCACATTTGCAGATTAGGCCTTC 60.181 47.826 12.58 2.55 0.00 3.46
71 72 2.360165 CTCCACATTTGCAGATTAGGCC 59.640 50.000 0.00 0.00 0.00 5.19
72 73 2.360165 CCTCCACATTTGCAGATTAGGC 59.640 50.000 0.00 0.00 0.00 3.93
73 74 2.954318 CCCTCCACATTTGCAGATTAGG 59.046 50.000 0.00 0.00 0.00 2.69
74 75 3.881688 CTCCCTCCACATTTGCAGATTAG 59.118 47.826 0.00 0.00 0.00 1.73
75 76 3.371917 CCTCCCTCCACATTTGCAGATTA 60.372 47.826 0.00 0.00 0.00 1.75
76 77 2.622452 CCTCCCTCCACATTTGCAGATT 60.622 50.000 0.00 0.00 0.00 2.40
77 78 1.064166 CCTCCCTCCACATTTGCAGAT 60.064 52.381 0.00 0.00 0.00 2.90
79 80 0.038744 ACCTCCCTCCACATTTGCAG 59.961 55.000 0.00 0.00 0.00 4.41
80 81 0.251297 CACCTCCCTCCACATTTGCA 60.251 55.000 0.00 0.00 0.00 4.08
81 82 1.598701 GCACCTCCCTCCACATTTGC 61.599 60.000 0.00 0.00 0.00 3.68
84 85 2.671070 CGCACCTCCCTCCACATT 59.329 61.111 0.00 0.00 0.00 2.71
89 90 2.446036 ATACCCGCACCTCCCTCC 60.446 66.667 0.00 0.00 0.00 4.30
90 91 1.049289 AAGATACCCGCACCTCCCTC 61.049 60.000 0.00 0.00 0.00 4.30
91 92 0.620700 AAAGATACCCGCACCTCCCT 60.621 55.000 0.00 0.00 0.00 4.20
94 95 0.733150 GCAAAAGATACCCGCACCTC 59.267 55.000 0.00 0.00 0.00 3.85
95 96 0.037590 TGCAAAAGATACCCGCACCT 59.962 50.000 0.00 0.00 0.00 4.00
96 97 0.885196 TTGCAAAAGATACCCGCACC 59.115 50.000 0.00 0.00 31.10 5.01
97 98 2.715737 TTTGCAAAAGATACCCGCAC 57.284 45.000 10.02 0.00 31.10 5.34
98 99 3.951775 ATTTTGCAAAAGATACCCGCA 57.048 38.095 27.08 3.15 0.00 5.69
99 100 3.370672 CCAATTTTGCAAAAGATACCCGC 59.629 43.478 27.08 0.00 0.00 6.13
100 101 3.370672 GCCAATTTTGCAAAAGATACCCG 59.629 43.478 27.08 12.35 0.00 5.28
101 102 4.322567 TGCCAATTTTGCAAAAGATACCC 58.677 39.130 27.08 14.39 35.40 3.69
102 103 6.818142 ACTATGCCAATTTTGCAAAAGATACC 59.182 34.615 27.08 15.28 42.92 2.73
103 104 7.832503 ACTATGCCAATTTTGCAAAAGATAC 57.167 32.000 27.08 17.50 42.92 2.24
104 105 8.719648 CAAACTATGCCAATTTTGCAAAAGATA 58.280 29.630 27.08 16.21 42.92 1.98
106 107 6.957150 CAAACTATGCCAATTTTGCAAAAGA 58.043 32.000 27.08 8.37 42.92 2.52
122 123 5.580691 TCTGACGGATACAAAGCAAACTATG 59.419 40.000 0.00 0.00 0.00 2.23
123 124 5.730550 TCTGACGGATACAAAGCAAACTAT 58.269 37.500 0.00 0.00 0.00 2.12
124 125 5.142061 TCTGACGGATACAAAGCAAACTA 57.858 39.130 0.00 0.00 0.00 2.24
125 126 4.002906 TCTGACGGATACAAAGCAAACT 57.997 40.909 0.00 0.00 0.00 2.66
126 127 4.946784 ATCTGACGGATACAAAGCAAAC 57.053 40.909 0.00 0.00 32.04 2.93
127 128 7.722363 TCTATATCTGACGGATACAAAGCAAA 58.278 34.615 6.12 0.00 39.43 3.68
128 129 7.284919 TCTATATCTGACGGATACAAAGCAA 57.715 36.000 6.12 0.00 39.43 3.91
129 130 6.894339 TCTATATCTGACGGATACAAAGCA 57.106 37.500 6.12 0.00 39.43 3.91
130 131 6.689241 CGATCTATATCTGACGGATACAAAGC 59.311 42.308 6.12 0.00 39.43 3.51
131 132 7.065923 TCCGATCTATATCTGACGGATACAAAG 59.934 40.741 6.12 5.26 43.30 2.77
132 133 6.882678 TCCGATCTATATCTGACGGATACAAA 59.117 38.462 6.12 0.00 43.30 2.83
133 134 6.412214 TCCGATCTATATCTGACGGATACAA 58.588 40.000 6.12 0.00 43.30 2.41
134 135 5.985911 TCCGATCTATATCTGACGGATACA 58.014 41.667 6.12 0.00 43.30 2.29
141 142 4.255301 AGACCGTCCGATCTATATCTGAC 58.745 47.826 0.00 3.47 40.83 3.51
143 144 8.610248 AATATAGACCGTCCGATCTATATCTG 57.390 38.462 19.07 0.00 44.71 2.90
144 145 9.709495 GTAATATAGACCGTCCGATCTATATCT 57.291 37.037 19.07 13.40 44.71 1.98
145 146 9.486497 TGTAATATAGACCGTCCGATCTATATC 57.514 37.037 19.07 11.25 44.71 1.63
146 147 9.842775 TTGTAATATAGACCGTCCGATCTATAT 57.157 33.333 14.93 14.93 46.24 0.86
147 148 9.322773 CTTGTAATATAGACCGTCCGATCTATA 57.677 37.037 12.02 12.02 42.05 1.31
148 149 8.045507 TCTTGTAATATAGACCGTCCGATCTAT 58.954 37.037 8.53 8.53 40.47 1.98
150 151 6.236409 TCTTGTAATATAGACCGTCCGATCT 58.764 40.000 0.00 0.00 0.00 2.75
151 152 6.492007 TCTTGTAATATAGACCGTCCGATC 57.508 41.667 0.00 0.00 0.00 3.69
152 153 6.127703 CCATCTTGTAATATAGACCGTCCGAT 60.128 42.308 0.00 0.00 0.00 4.18
154 155 5.399858 CCATCTTGTAATATAGACCGTCCG 58.600 45.833 0.00 0.00 0.00 4.79
155 156 5.169295 GCCATCTTGTAATATAGACCGTCC 58.831 45.833 0.00 0.00 0.00 4.79
156 157 5.779922 TGCCATCTTGTAATATAGACCGTC 58.220 41.667 0.00 0.00 0.00 4.79
157 158 5.279506 CCTGCCATCTTGTAATATAGACCGT 60.280 44.000 0.00 0.00 0.00 4.83
158 159 5.171476 CCTGCCATCTTGTAATATAGACCG 58.829 45.833 0.00 0.00 0.00 4.79
159 160 4.938226 GCCTGCCATCTTGTAATATAGACC 59.062 45.833 0.00 0.00 0.00 3.85
162 163 5.180117 GTGTGCCTGCCATCTTGTAATATAG 59.820 44.000 0.00 0.00 0.00 1.31
164 165 3.885297 GTGTGCCTGCCATCTTGTAATAT 59.115 43.478 0.00 0.00 0.00 1.28
165 166 3.278574 GTGTGCCTGCCATCTTGTAATA 58.721 45.455 0.00 0.00 0.00 0.98
167 168 1.533625 GTGTGCCTGCCATCTTGTAA 58.466 50.000 0.00 0.00 0.00 2.41
168 169 0.322456 GGTGTGCCTGCCATCTTGTA 60.322 55.000 0.00 0.00 0.00 2.41
170 171 1.592400 CTGGTGTGCCTGCCATCTTG 61.592 60.000 0.00 0.00 33.84 3.02
171 172 1.303888 CTGGTGTGCCTGCCATCTT 60.304 57.895 0.00 0.00 33.84 2.40
172 173 2.353958 CTGGTGTGCCTGCCATCT 59.646 61.111 0.00 0.00 33.84 2.90
178 179 0.036105 TAGTGATGCTGGTGTGCCTG 60.036 55.000 0.00 0.00 36.86 4.85
180 181 0.804989 GTTAGTGATGCTGGTGTGCC 59.195 55.000 0.00 0.00 0.00 5.01
181 182 1.734465 GAGTTAGTGATGCTGGTGTGC 59.266 52.381 0.00 0.00 0.00 4.57
182 183 1.995484 CGAGTTAGTGATGCTGGTGTG 59.005 52.381 0.00 0.00 0.00 3.82
183 184 1.893137 TCGAGTTAGTGATGCTGGTGT 59.107 47.619 0.00 0.00 0.00 4.16
184 185 2.654749 TCGAGTTAGTGATGCTGGTG 57.345 50.000 0.00 0.00 0.00 4.17
206 207 7.281841 TCCGAAGTTTTCTCTACCCTTAAAAA 58.718 34.615 0.00 0.00 0.00 1.94
207 208 6.829849 TCCGAAGTTTTCTCTACCCTTAAAA 58.170 36.000 0.00 0.00 0.00 1.52
208 209 6.423776 TCCGAAGTTTTCTCTACCCTTAAA 57.576 37.500 0.00 0.00 0.00 1.52
209 210 6.423776 TTCCGAAGTTTTCTCTACCCTTAA 57.576 37.500 0.00 0.00 0.00 1.85
210 211 6.423776 TTTCCGAAGTTTTCTCTACCCTTA 57.576 37.500 0.00 0.00 0.00 2.69
212 213 4.968971 TTTCCGAAGTTTTCTCTACCCT 57.031 40.909 0.00 0.00 0.00 4.34
213 214 6.430308 AGATTTTTCCGAAGTTTTCTCTACCC 59.570 38.462 0.00 0.00 0.00 3.69
292 293 9.252962 CCGACTTGTAAGTAGTTTTCTTTTCTA 57.747 33.333 0.00 0.00 39.88 2.10
294 295 8.060679 GTCCGACTTGTAAGTAGTTTTCTTTTC 58.939 37.037 0.00 0.00 39.88 2.29
299 300 4.383948 CCGTCCGACTTGTAAGTAGTTTTC 59.616 45.833 0.00 0.00 39.88 2.29
300 301 4.301628 CCGTCCGACTTGTAAGTAGTTTT 58.698 43.478 0.00 0.00 39.88 2.43
303 304 1.200948 GCCGTCCGACTTGTAAGTAGT 59.799 52.381 0.00 0.00 39.88 2.73
304 305 1.792993 CGCCGTCCGACTTGTAAGTAG 60.793 57.143 0.00 0.00 39.88 2.57
307 308 1.080974 ACGCCGTCCGACTTGTAAG 60.081 57.895 0.00 0.00 41.02 2.34
335 336 2.309764 AATTGCGCGCTGGAACGATC 62.310 55.000 33.29 0.00 34.06 3.69
336 337 1.087202 TAATTGCGCGCTGGAACGAT 61.087 50.000 33.29 11.27 34.06 3.73
339 345 1.648681 CTTTTAATTGCGCGCTGGAAC 59.351 47.619 33.29 1.73 0.00 3.62
345 351 2.164663 GCCCCTTTTAATTGCGCGC 61.165 57.895 27.26 27.26 0.00 6.86
347 353 4.086860 CGCCCCTTTTAATTGCGC 57.913 55.556 0.00 0.00 38.69 6.09
355 361 3.694538 GCATGGCACGCCCCTTTT 61.695 61.111 5.42 0.00 34.56 2.27
377 383 5.104900 CCTTGAAAGCTAGTAGGCCTTAAGA 60.105 44.000 12.58 0.00 0.00 2.10
381 387 2.913617 ACCTTGAAAGCTAGTAGGCCTT 59.086 45.455 12.58 0.00 0.00 4.35
382 388 2.502130 GACCTTGAAAGCTAGTAGGCCT 59.498 50.000 11.78 11.78 0.00 5.19
383 389 2.236395 TGACCTTGAAAGCTAGTAGGCC 59.764 50.000 0.00 0.00 0.00 5.19
384 390 3.526534 CTGACCTTGAAAGCTAGTAGGC 58.473 50.000 0.00 0.00 0.00 3.93
385 391 3.196685 AGCTGACCTTGAAAGCTAGTAGG 59.803 47.826 0.00 0.00 45.26 3.18
386 392 4.464069 AGCTGACCTTGAAAGCTAGTAG 57.536 45.455 0.00 0.00 45.26 2.57
387 393 4.891992 AAGCTGACCTTGAAAGCTAGTA 57.108 40.909 0.00 0.00 46.36 1.82
388 394 3.778954 AAGCTGACCTTGAAAGCTAGT 57.221 42.857 0.00 0.00 46.36 2.57
389 395 3.817647 ACAAAGCTGACCTTGAAAGCTAG 59.182 43.478 2.92 0.00 46.36 3.42
390 396 3.820557 ACAAAGCTGACCTTGAAAGCTA 58.179 40.909 2.92 0.00 46.36 3.32
392 398 3.375642 GAACAAAGCTGACCTTGAAAGC 58.624 45.455 2.92 0.00 37.20 3.51
393 399 3.381272 TGGAACAAAGCTGACCTTGAAAG 59.619 43.478 2.92 0.00 33.01 2.62
394 400 3.360867 TGGAACAAAGCTGACCTTGAAA 58.639 40.909 2.92 0.00 33.01 2.69
396 402 2.727123 TGGAACAAAGCTGACCTTGA 57.273 45.000 2.92 0.00 33.01 3.02
441 448 2.894000 CGACACAACACGCGATTAAAAG 59.106 45.455 15.93 0.00 0.00 2.27
462 469 2.126189 GTACGTGCCCGACAGGTC 60.126 66.667 0.00 0.00 43.79 3.85
545 619 2.283532 TTGGATTTGGGCGGGTGG 60.284 61.111 0.00 0.00 0.00 4.61
551 625 0.671472 GCTTGTGCTTGGATTTGGGC 60.671 55.000 0.00 0.00 36.03 5.36
659 2169 2.281070 AGCTCGTGGTGCTGGTTG 60.281 61.111 0.00 0.00 39.56 3.77
898 2426 3.952628 CTTCGTCCCCTGCGTTCCC 62.953 68.421 0.00 0.00 0.00 3.97
899 2427 2.434359 CTTCGTCCCCTGCGTTCC 60.434 66.667 0.00 0.00 0.00 3.62
900 2428 2.027625 CACTTCGTCCCCTGCGTTC 61.028 63.158 0.00 0.00 0.00 3.95
901 2429 2.030562 CACTTCGTCCCCTGCGTT 59.969 61.111 0.00 0.00 0.00 4.84
902 2430 4.003788 CCACTTCGTCCCCTGCGT 62.004 66.667 0.00 0.00 0.00 5.24
903 2431 4.003788 ACCACTTCGTCCCCTGCG 62.004 66.667 0.00 0.00 0.00 5.18
904 2432 2.358737 CACCACTTCGTCCCCTGC 60.359 66.667 0.00 0.00 0.00 4.85
905 2433 2.347490 CCACCACTTCGTCCCCTG 59.653 66.667 0.00 0.00 0.00 4.45
923 2451 3.123620 GCCGGAGCTGCAAGTCAG 61.124 66.667 5.05 0.00 45.62 3.51
1007 3242 1.339055 CGGACAAATCTGGAGCTGGAA 60.339 52.381 0.00 0.00 0.00 3.53
1022 3257 3.390521 CAGCTGGTAGCCCGGACA 61.391 66.667 0.73 0.00 43.77 4.02
1045 3280 4.485024 GCAACTGGAATATGCTGATCAG 57.515 45.455 18.84 18.84 37.12 2.90
1202 3437 0.322456 GTACATGCCAAGTGCCCTCA 60.322 55.000 0.00 0.00 40.16 3.86
1209 3444 2.234908 GGAGAGACTGTACATGCCAAGT 59.765 50.000 0.00 0.00 0.00 3.16
1239 3474 4.024984 AGGGGCAGGGAGTAGGCA 62.025 66.667 0.00 0.00 0.00 4.75
1249 3484 2.612115 AGGTTCAGGGAGGGGCAG 60.612 66.667 0.00 0.00 0.00 4.85
1407 3643 0.318614 GAACCCCGTCGTCGTTTACA 60.319 55.000 0.71 0.00 35.01 2.41
1842 4078 3.319137 TGTTCAGGATCCAAACTCTCG 57.681 47.619 23.05 1.37 0.00 4.04
1959 4195 4.379339 TGTGCTTTTCCCAGTAAACAAC 57.621 40.909 0.00 0.00 0.00 3.32
2281 4517 4.457466 GGAACACACTTAAGGTTGGAAGA 58.543 43.478 7.53 0.00 0.00 2.87
2405 4641 7.159437 TGTTTCATGTCATTTAGCAAAAACG 57.841 32.000 0.00 0.00 32.17 3.60
2610 4850 2.731976 GTGGACGCACAAAGTAAGAGAG 59.268 50.000 0.00 0.00 0.00 3.20
2611 4851 2.547218 GGTGGACGCACAAAGTAAGAGA 60.547 50.000 0.00 0.00 0.00 3.10
2612 4852 1.798813 GGTGGACGCACAAAGTAAGAG 59.201 52.381 0.00 0.00 0.00 2.85
2613 4853 1.541670 GGGTGGACGCACAAAGTAAGA 60.542 52.381 0.00 0.00 0.00 2.10
2614 4854 0.872388 GGGTGGACGCACAAAGTAAG 59.128 55.000 0.00 0.00 0.00 2.34
2615 4855 0.470766 AGGGTGGACGCACAAAGTAA 59.529 50.000 0.00 0.00 0.00 2.24
2617 4857 0.395173 AAAGGGTGGACGCACAAAGT 60.395 50.000 0.00 0.00 0.00 2.66
2618 4858 1.265905 GTAAAGGGTGGACGCACAAAG 59.734 52.381 0.00 0.00 0.00 2.77
2619 4859 1.310904 GTAAAGGGTGGACGCACAAA 58.689 50.000 0.00 0.00 0.00 2.83
2620 4860 0.180642 TGTAAAGGGTGGACGCACAA 59.819 50.000 0.00 0.00 0.00 3.33
2687 5849 8.465273 ACCACCATCTTTATATTTTTCCTAGC 57.535 34.615 0.00 0.00 0.00 3.42
2695 5857 8.877195 AGGATACGTACCACCATCTTTATATTT 58.123 33.333 14.11 0.00 46.39 1.40
2815 5979 5.331902 CATGAATGTACAAAACGCCCTTAG 58.668 41.667 0.00 0.00 0.00 2.18
2884 6048 5.622770 ACACTATTCACATTCCGTTTTCC 57.377 39.130 0.00 0.00 0.00 3.13
2978 6142 2.031191 TCCGTGCAAACTTTCTCGAAAC 59.969 45.455 0.00 0.00 0.00 2.78
3004 6305 8.361139 AGTGTACTATTGTGGAAGAGCATATAC 58.639 37.037 0.00 0.00 0.00 1.47
3320 7042 2.489938 TAAGAACGGCAAGAAGGCAT 57.510 45.000 0.00 0.00 44.47 4.40
3378 7100 5.510671 TGAAATTTGCACTCTTTTCTCGAC 58.489 37.500 0.00 0.00 0.00 4.20
3544 7267 5.352284 ACATTCGGTTGCAATTTTTGTACA 58.648 33.333 0.59 0.00 0.00 2.90
3636 7361 6.617105 GCTTTGCAGTTCACAAGAATTAATGC 60.617 38.462 0.00 0.00 35.92 3.56
3657 7382 9.846248 GTTAATAGTCAACAAATGATCAGCTTT 57.154 29.630 0.09 0.00 40.97 3.51
3700 7425 5.073691 AGTGCATTTATAAGCCCTGATAGGT 59.926 40.000 0.00 0.00 31.93 3.08
3810 7541 3.876914 TCGGATCCACACAATAATTCAGC 59.123 43.478 13.41 0.00 0.00 4.26
3822 7553 2.500229 GTGGTTCTTTTCGGATCCACA 58.500 47.619 13.41 0.00 46.84 4.17
3891 7624 8.693120 TTTTCGGTAATAAACATATGCCCATA 57.307 30.769 1.58 0.00 0.00 2.74
4007 7741 1.615883 CAGCGCCTATGTATCCTGTCT 59.384 52.381 2.29 0.00 0.00 3.41
4327 8061 3.567579 CTGCCCGGTCACCATGGTT 62.568 63.158 16.84 0.00 0.00 3.67
4455 8189 1.004918 CTGTCCGCTCGTCCCTTTT 60.005 57.895 0.00 0.00 0.00 2.27
5684 9423 2.798364 GCTCCGCTAGGGTTCCTCC 61.798 68.421 6.02 0.00 38.33 4.30
5685 9424 2.816012 GCTCCGCTAGGGTTCCTC 59.184 66.667 6.02 0.00 38.33 3.71
5686 9425 3.148279 CGCTCCGCTAGGGTTCCT 61.148 66.667 6.02 0.00 38.33 3.36
5687 9426 4.222847 CCGCTCCGCTAGGGTTCC 62.223 72.222 6.02 0.00 36.43 3.62
5688 9427 4.222847 CCCGCTCCGCTAGGGTTC 62.223 72.222 6.02 0.00 40.27 3.62
5712 9451 2.361230 CCACTTTTCGGCTCCCCC 60.361 66.667 0.00 0.00 0.00 5.40
5713 9452 3.062466 GCCACTTTTCGGCTCCCC 61.062 66.667 0.00 0.00 46.56 4.81
5719 9458 1.264288 GTTGTGAGAGCCACTTTTCGG 59.736 52.381 0.00 0.00 45.86 4.30
5720 9459 1.264288 GGTTGTGAGAGCCACTTTTCG 59.736 52.381 0.00 0.00 45.86 3.46
5721 9460 2.291741 CTGGTTGTGAGAGCCACTTTTC 59.708 50.000 0.00 0.00 45.86 2.29
5722 9461 2.301346 CTGGTTGTGAGAGCCACTTTT 58.699 47.619 0.00 0.00 45.86 2.27
5723 9462 1.972872 CTGGTTGTGAGAGCCACTTT 58.027 50.000 0.00 0.00 45.86 2.66
5724 9463 0.536006 GCTGGTTGTGAGAGCCACTT 60.536 55.000 0.00 0.00 45.86 3.16
5725 9464 1.072159 GCTGGTTGTGAGAGCCACT 59.928 57.895 0.00 0.00 45.86 4.00
5726 9465 0.321671 TAGCTGGTTGTGAGAGCCAC 59.678 55.000 0.00 0.00 45.88 5.01
5727 9466 0.321671 GTAGCTGGTTGTGAGAGCCA 59.678 55.000 0.00 0.00 32.86 4.75
5728 9467 0.610687 AGTAGCTGGTTGTGAGAGCC 59.389 55.000 0.00 0.00 32.86 4.70
5729 9468 1.674221 CCAGTAGCTGGTTGTGAGAGC 60.674 57.143 6.99 0.00 45.82 4.09
5730 9469 2.376808 CCAGTAGCTGGTTGTGAGAG 57.623 55.000 6.99 0.00 45.82 3.20
5742 9481 1.666234 GCCGAGCATAGCCAGTAGC 60.666 63.158 0.00 0.00 44.25 3.58
5743 9482 1.742146 TGCCGAGCATAGCCAGTAG 59.258 57.895 0.00 0.00 31.71 2.57
5744 9483 3.948702 TGCCGAGCATAGCCAGTA 58.051 55.556 0.00 0.00 31.71 2.74
5753 9492 3.247411 CGACAATAAACATATGCCGAGCA 59.753 43.478 1.58 1.01 44.86 4.26
5754 9493 3.247648 ACGACAATAAACATATGCCGAGC 59.752 43.478 1.58 0.00 0.00 5.03
5755 9494 4.270084 ACACGACAATAAACATATGCCGAG 59.730 41.667 1.58 0.00 0.00 4.63
5756 9495 4.185394 ACACGACAATAAACATATGCCGA 58.815 39.130 1.58 0.00 0.00 5.54
5757 9496 4.530094 ACACGACAATAAACATATGCCG 57.470 40.909 1.58 0.00 0.00 5.69
5758 9497 7.011828 AGTAACACGACAATAAACATATGCC 57.988 36.000 1.58 0.00 0.00 4.40
5759 9498 8.785101 CAAAGTAACACGACAATAAACATATGC 58.215 33.333 1.58 0.00 0.00 3.14
5760 9499 8.785101 GCAAAGTAACACGACAATAAACATATG 58.215 33.333 0.00 0.00 0.00 1.78
5761 9500 8.508062 TGCAAAGTAACACGACAATAAACATAT 58.492 29.630 0.00 0.00 0.00 1.78
5762 9501 7.862648 TGCAAAGTAACACGACAATAAACATA 58.137 30.769 0.00 0.00 0.00 2.29
5763 9502 6.730175 TGCAAAGTAACACGACAATAAACAT 58.270 32.000 0.00 0.00 0.00 2.71
5764 9503 6.120378 TGCAAAGTAACACGACAATAAACA 57.880 33.333 0.00 0.00 0.00 2.83
5765 9504 8.013378 ACTATGCAAAGTAACACGACAATAAAC 58.987 33.333 0.00 0.00 0.00 2.01
5766 9505 8.090250 ACTATGCAAAGTAACACGACAATAAA 57.910 30.769 0.00 0.00 0.00 1.40
5767 9506 7.148540 GGACTATGCAAAGTAACACGACAATAA 60.149 37.037 0.00 0.00 0.00 1.40
5768 9507 6.311935 GGACTATGCAAAGTAACACGACAATA 59.688 38.462 0.00 0.00 0.00 1.90
5769 9508 5.121768 GGACTATGCAAAGTAACACGACAAT 59.878 40.000 0.00 0.00 0.00 2.71
5770 9509 4.449743 GGACTATGCAAAGTAACACGACAA 59.550 41.667 0.00 0.00 0.00 3.18
5771 9510 3.991773 GGACTATGCAAAGTAACACGACA 59.008 43.478 0.00 0.00 0.00 4.35
5772 9511 3.991773 TGGACTATGCAAAGTAACACGAC 59.008 43.478 0.00 0.00 0.00 4.34
5773 9512 4.260139 TGGACTATGCAAAGTAACACGA 57.740 40.909 0.00 0.00 0.00 4.35
5774 9513 4.391830 ACATGGACTATGCAAAGTAACACG 59.608 41.667 0.00 0.00 40.59 4.49
5887 9626 8.774586 GCACTTCTCTCAAATTTTAGTGTTAGA 58.225 33.333 0.00 0.00 35.25 2.10
5888 9627 8.778358 AGCACTTCTCTCAAATTTTAGTGTTAG 58.222 33.333 0.00 3.29 35.25 2.34
5954 9697 2.307098 ACAGGGAAATGAGCTAGCAACT 59.693 45.455 18.83 0.00 0.00 3.16
5955 9698 2.716217 ACAGGGAAATGAGCTAGCAAC 58.284 47.619 18.83 11.11 0.00 4.17
5956 9699 3.439857 AACAGGGAAATGAGCTAGCAA 57.560 42.857 18.83 4.87 0.00 3.91
5957 9700 3.774766 TCTAACAGGGAAATGAGCTAGCA 59.225 43.478 18.83 0.00 0.00 3.49
6090 10004 8.922676 CAAATCAATGGCTCAGATTTATTATGC 58.077 33.333 9.89 0.00 39.28 3.14
6176 10090 5.065218 AGAGTAATTTTAACATGCTGCCTCG 59.935 40.000 0.00 0.00 0.00 4.63
6181 10095 9.499585 CATGAGAAGAGTAATTTTAACATGCTG 57.500 33.333 0.00 0.00 0.00 4.41
6226 10140 6.680810 TGTGGCTAAATCACAAAAATGAGAG 58.319 36.000 0.00 0.00 41.50 3.20
6227 10141 6.647334 TGTGGCTAAATCACAAAAATGAGA 57.353 33.333 0.00 0.00 41.50 3.27
6238 10154 6.237901 ACTAACAGAACATGTGGCTAAATCA 58.762 36.000 0.00 0.00 43.00 2.57
6991 11865 3.456280 TGCCAGAACAGAAAAATGCAAC 58.544 40.909 0.00 0.00 0.00 4.17
7010 11884 1.541588 CAAAAAGACCTACAGCCCTGC 59.458 52.381 0.00 0.00 0.00 4.85
7294 12185 2.555227 CCCATTAAACTGACTGGTGGCT 60.555 50.000 0.00 0.00 0.00 4.75
7315 12206 2.676342 ACGACGATGGATTTTAACAGGC 59.324 45.455 0.00 0.00 0.00 4.85
7342 12233 5.041940 AGAGACGATAACGAAGCATAAACC 58.958 41.667 0.00 0.00 42.66 3.27
7367 12261 9.235537 GCAAAGTAAATAAGGTTTAACGACAAA 57.764 29.630 0.00 0.00 0.00 2.83
7449 12350 6.543465 TGGAGCAACATCATCTACCTTTTATG 59.457 38.462 0.00 0.00 0.00 1.90
7452 12353 4.922206 TGGAGCAACATCATCTACCTTTT 58.078 39.130 0.00 0.00 0.00 2.27
7541 12451 4.815533 ACTCTATGTCAGCAGTGTGATT 57.184 40.909 0.00 0.00 0.00 2.57
7634 12547 2.797491 CGTCGAGCACAATCATGAGTA 58.203 47.619 0.09 0.00 0.00 2.59
7635 12548 1.633561 CGTCGAGCACAATCATGAGT 58.366 50.000 0.09 0.00 0.00 3.41
7660 12619 1.897560 GGTTAAGCCTGTGAAGCAGT 58.102 50.000 0.00 0.00 43.55 4.40
7697 12656 5.006386 AGGTTTGATTAAGCCTGTGAAGAG 58.994 41.667 4.75 0.00 44.70 2.85
7765 12725 2.111384 AGGTACATGTCCCTGCTGTAG 58.889 52.381 9.54 0.00 0.00 2.74
7772 12732 7.947890 TCATAAAAGAAAAAGGTACATGTCCCT 59.052 33.333 3.70 3.70 0.00 4.20
7834 12810 6.086896 GCAACGTCAGCTATTTCTTTTTCTTC 59.913 38.462 5.76 0.00 0.00 2.87
7835 12811 5.915196 GCAACGTCAGCTATTTCTTTTTCTT 59.085 36.000 5.76 0.00 0.00 2.52
7836 12812 5.008613 TGCAACGTCAGCTATTTCTTTTTCT 59.991 36.000 13.19 0.00 0.00 2.52
7837 12813 5.115622 GTGCAACGTCAGCTATTTCTTTTTC 59.884 40.000 13.19 0.00 0.00 2.29
7872 12848 5.702209 CAGGCTGCACCAAATTTTAAGATTT 59.298 36.000 0.00 0.00 43.14 2.17
7873 12849 5.240121 CAGGCTGCACCAAATTTTAAGATT 58.760 37.500 0.00 0.00 43.14 2.40
7889 12866 0.322456 TTGGTACATGTCCAGGCTGC 60.322 55.000 9.56 0.00 39.30 5.25
7986 12963 8.607441 AAAATGGAAAAGGTTTGATTAAGCTC 57.393 30.769 0.00 0.00 43.54 4.09
7994 12971 9.762933 CAAATCTAGAAAATGGAAAAGGTTTGA 57.237 29.630 0.00 0.00 37.27 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.