Multiple sequence alignment - TraesCS7D01G423300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G423300 chr7D 100.000 4412 0 0 1 4412 543641379 543636968 0.000000e+00 8148
1 TraesCS7D01G423300 chr7D 82.117 2494 403 30 924 3394 543563710 543561237 0.000000e+00 2095
2 TraesCS7D01G423300 chr7D 81.882 2423 414 20 985 3393 543627154 543624743 0.000000e+00 2019
3 TraesCS7D01G423300 chr7D 82.161 2388 358 41 1046 3402 541966836 541964486 0.000000e+00 1988
4 TraesCS7D01G423300 chr7D 81.566 2376 380 41 1053 3402 556719538 556717195 0.000000e+00 1908
5 TraesCS7D01G423300 chr7D 87.755 735 54 19 70 784 543723369 543722651 0.000000e+00 826
6 TraesCS7D01G423300 chr7D 73.464 358 69 18 4059 4407 543607841 543607501 1.300000e-20 111
7 TraesCS7D01G423300 chr6B 96.758 3054 96 3 407 3457 694668380 694665327 0.000000e+00 5088
8 TraesCS7D01G423300 chr6B 87.607 702 67 10 3539 4222 694665328 694664629 0.000000e+00 797
9 TraesCS7D01G423300 chr6B 82.642 651 68 24 70 689 694672720 694672084 6.500000e-148 534
10 TraesCS7D01G423300 chr6B 89.720 321 32 1 1 321 694670492 694670173 4.110000e-110 409
11 TraesCS7D01G423300 chr6B 93.000 100 5 2 312 410 694668570 694668472 1.280000e-30 145
12 TraesCS7D01G423300 chr6B 96.774 62 2 0 4351 4412 694664627 694664566 2.170000e-18 104
13 TraesCS7D01G423300 chr7A 93.076 3264 206 5 208 3457 625632803 625629546 0.000000e+00 4758
14 TraesCS7D01G423300 chr7A 81.956 2444 410 24 972 3397 625535265 625532835 0.000000e+00 2041
15 TraesCS7D01G423300 chr7A 82.006 2423 411 21 985 3393 625603957 625601546 0.000000e+00 2036
16 TraesCS7D01G423300 chr7A 81.363 2377 383 43 1053 3402 642327376 642325033 0.000000e+00 1881
17 TraesCS7D01G423300 chr7A 80.424 2452 431 33 972 3399 625617241 625614815 0.000000e+00 1823
18 TraesCS7D01G423300 chr7A 88.194 576 37 13 246 800 625633931 625633366 0.000000e+00 658
19 TraesCS7D01G423300 chr7A 82.205 517 83 6 916 1428 625598435 625597924 1.880000e-118 436
20 TraesCS7D01G423300 chr7A 89.474 342 24 6 4077 4412 625629365 625629030 5.280000e-114 422
21 TraesCS7D01G423300 chr7B 82.716 2430 389 24 985 3399 586968846 586966433 0.000000e+00 2132
22 TraesCS7D01G423300 chr7B 81.389 2375 386 39 1053 3402 604100751 604098408 0.000000e+00 1886
23 TraesCS7D01G423300 chr1D 95.745 94 3 1 3452 3545 209139274 209139366 2.750000e-32 150
24 TraesCS7D01G423300 chr1D 95.556 90 2 2 3451 3540 263868012 263867925 4.600000e-30 143
25 TraesCS7D01G423300 chr2D 97.674 86 2 0 3455 3540 302248012 302248097 9.890000e-32 148
26 TraesCS7D01G423300 chr1B 95.699 93 3 1 3450 3541 406341852 406341760 9.890000e-32 148
27 TraesCS7D01G423300 chr2A 91.667 108 5 4 3443 3548 432581616 432581721 3.560000e-31 147
28 TraesCS7D01G423300 chr4D 90.265 113 7 4 3453 3563 324227849 324227739 1.280000e-30 145
29 TraesCS7D01G423300 chr2B 92.929 99 6 1 3443 3540 396927372 396927470 4.600000e-30 143
30 TraesCS7D01G423300 chrUn 92.000 100 6 2 3449 3547 3346391 3346489 5.950000e-29 139
31 TraesCS7D01G423300 chr3A 90.476 105 7 3 3456 3560 45603269 45603370 7.700000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G423300 chr7D 543636968 543641379 4411 True 8148.0 8148 100.0000 1 4412 1 chr7D.!!$R5 4411
1 TraesCS7D01G423300 chr7D 543561237 543563710 2473 True 2095.0 2095 82.1170 924 3394 1 chr7D.!!$R2 2470
2 TraesCS7D01G423300 chr7D 543624743 543627154 2411 True 2019.0 2019 81.8820 985 3393 1 chr7D.!!$R4 2408
3 TraesCS7D01G423300 chr7D 541964486 541966836 2350 True 1988.0 1988 82.1610 1046 3402 1 chr7D.!!$R1 2356
4 TraesCS7D01G423300 chr7D 556717195 556719538 2343 True 1908.0 1908 81.5660 1053 3402 1 chr7D.!!$R7 2349
5 TraesCS7D01G423300 chr7D 543722651 543723369 718 True 826.0 826 87.7550 70 784 1 chr7D.!!$R6 714
6 TraesCS7D01G423300 chr6B 694664566 694672720 8154 True 1179.5 5088 91.0835 1 4412 6 chr6B.!!$R1 4411
7 TraesCS7D01G423300 chr7A 625532835 625535265 2430 True 2041.0 2041 81.9560 972 3397 1 chr7A.!!$R1 2425
8 TraesCS7D01G423300 chr7A 625629030 625633931 4901 True 1946.0 4758 90.2480 208 4412 3 chr7A.!!$R5 4204
9 TraesCS7D01G423300 chr7A 642325033 642327376 2343 True 1881.0 1881 81.3630 1053 3402 1 chr7A.!!$R3 2349
10 TraesCS7D01G423300 chr7A 625614815 625617241 2426 True 1823.0 1823 80.4240 972 3399 1 chr7A.!!$R2 2427
11 TraesCS7D01G423300 chr7A 625597924 625603957 6033 True 1236.0 2036 82.1055 916 3393 2 chr7A.!!$R4 2477
12 TraesCS7D01G423300 chr7B 586966433 586968846 2413 True 2132.0 2132 82.7160 985 3399 1 chr7B.!!$R1 2414
13 TraesCS7D01G423300 chr7B 604098408 604100751 2343 True 1886.0 1886 81.3890 1053 3402 1 chr7B.!!$R2 2349

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.185175 ATATTTCCTTCCCCGCCACC 59.815 55.000 0.00 0.0 0.0 4.61 F
79 80 0.390472 GCAAACGGAGGAGAGGTGAG 60.390 60.000 0.00 0.0 0.0 3.51 F
136 137 1.066358 GCTTTACCCTAGTCGCCTTGT 60.066 52.381 0.00 0.0 0.0 3.16 F
911 5857 1.738350 TGTTGAAAGTTGAAACCGCGA 59.262 42.857 8.23 0.0 0.0 5.87 F
2217 7194 2.092968 TGGTGGATGTTCTATCTGGCAC 60.093 50.000 0.00 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1185 6141 1.502690 ACCATATGCCGAGGTACCAA 58.497 50.000 15.94 0.00 32.92 3.67 R
1770 6735 3.185246 ACATGGCGAGTAATCCTCTTG 57.815 47.619 0.00 0.00 38.11 3.02 R
2134 7111 4.270566 GCAAAATTGTGCACACTCATTCAA 59.729 37.500 21.56 1.85 44.29 2.69 R
2335 7315 1.811965 TGCAACTCCAATGACAATCCG 59.188 47.619 0.00 0.00 0.00 4.18 R
4114 9157 0.380378 TCACTGCCGTGAAAAACTGC 59.620 50.000 8.67 0.00 46.61 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.917329 TGTCAACTAGTCGGAGTCAAG 57.083 47.619 0.00 0.00 0.00 3.02
21 22 2.557056 TGTCAACTAGTCGGAGTCAAGG 59.443 50.000 0.00 0.00 0.00 3.61
22 23 1.544691 TCAACTAGTCGGAGTCAAGGC 59.455 52.381 0.00 0.00 0.00 4.35
23 24 1.272490 CAACTAGTCGGAGTCAAGGCA 59.728 52.381 0.00 0.00 0.00 4.75
24 25 0.889306 ACTAGTCGGAGTCAAGGCAC 59.111 55.000 0.00 0.00 0.00 5.01
25 26 0.888619 CTAGTCGGAGTCAAGGCACA 59.111 55.000 0.00 0.00 0.00 4.57
29 30 2.301870 AGTCGGAGTCAAGGCACAAATA 59.698 45.455 0.00 0.00 0.00 1.40
30 31 3.055094 AGTCGGAGTCAAGGCACAAATAT 60.055 43.478 0.00 0.00 0.00 1.28
31 32 3.689649 GTCGGAGTCAAGGCACAAATATT 59.310 43.478 0.00 0.00 0.00 1.28
39 40 4.466015 TCAAGGCACAAATATTTCCTTCCC 59.534 41.667 13.95 4.86 35.14 3.97
40 41 3.374764 AGGCACAAATATTTCCTTCCCC 58.625 45.455 0.00 0.00 0.00 4.81
41 42 2.100749 GGCACAAATATTTCCTTCCCCG 59.899 50.000 0.00 0.00 0.00 5.73
43 44 2.100749 CACAAATATTTCCTTCCCCGCC 59.899 50.000 0.00 0.00 0.00 6.13
45 46 2.067365 AATATTTCCTTCCCCGCCAC 57.933 50.000 0.00 0.00 0.00 5.01
46 47 0.185175 ATATTTCCTTCCCCGCCACC 59.815 55.000 0.00 0.00 0.00 4.61
47 48 1.208844 TATTTCCTTCCCCGCCACCA 61.209 55.000 0.00 0.00 0.00 4.17
48 49 2.499303 ATTTCCTTCCCCGCCACCAG 62.499 60.000 0.00 0.00 0.00 4.00
75 76 2.125512 CGGCAAACGGAGGAGAGG 60.126 66.667 0.00 0.00 39.42 3.69
79 80 0.390472 GCAAACGGAGGAGAGGTGAG 60.390 60.000 0.00 0.00 0.00 3.51
90 91 2.526873 AGGTGAGTCCACGGGCTT 60.527 61.111 0.00 0.00 44.09 4.35
94 95 2.743928 GAGTCCACGGGCTTGCTG 60.744 66.667 0.00 0.00 0.00 4.41
103 104 2.439156 GGCTTGCTGGCGGAGATT 60.439 61.111 0.00 0.00 0.00 2.40
136 137 1.066358 GCTTTACCCTAGTCGCCTTGT 60.066 52.381 0.00 0.00 0.00 3.16
160 161 3.178046 GAGGGGAAGGAAAGTCTCTTCT 58.822 50.000 0.00 0.00 39.30 2.85
167 168 6.943146 GGGAAGGAAAGTCTCTTCTTAATGTT 59.057 38.462 0.00 0.00 39.30 2.71
168 169 7.119992 GGGAAGGAAAGTCTCTTCTTAATGTTC 59.880 40.741 0.00 0.00 39.30 3.18
170 171 6.760291 AGGAAAGTCTCTTCTTAATGTTCGT 58.240 36.000 0.00 0.00 0.00 3.85
171 172 6.647067 AGGAAAGTCTCTTCTTAATGTTCGTG 59.353 38.462 0.00 0.00 0.00 4.35
172 173 5.847670 AAGTCTCTTCTTAATGTTCGTGC 57.152 39.130 0.00 0.00 0.00 5.34
173 174 4.246458 AGTCTCTTCTTAATGTTCGTGCC 58.754 43.478 0.00 0.00 0.00 5.01
174 175 3.994392 GTCTCTTCTTAATGTTCGTGCCA 59.006 43.478 0.00 0.00 0.00 4.92
175 176 4.451096 GTCTCTTCTTAATGTTCGTGCCAA 59.549 41.667 0.00 0.00 0.00 4.52
176 177 4.451096 TCTCTTCTTAATGTTCGTGCCAAC 59.549 41.667 0.00 0.00 0.00 3.77
177 178 4.385825 TCTTCTTAATGTTCGTGCCAACT 58.614 39.130 0.00 0.00 0.00 3.16
178 179 4.819630 TCTTCTTAATGTTCGTGCCAACTT 59.180 37.500 0.00 0.00 0.00 2.66
179 180 5.992829 TCTTCTTAATGTTCGTGCCAACTTA 59.007 36.000 0.00 0.00 0.00 2.24
180 181 6.483974 TCTTCTTAATGTTCGTGCCAACTTAA 59.516 34.615 0.00 0.00 0.00 1.85
181 182 6.621316 TCTTAATGTTCGTGCCAACTTAAA 57.379 33.333 0.00 0.00 0.00 1.52
182 183 7.209471 TCTTAATGTTCGTGCCAACTTAAAT 57.791 32.000 0.00 0.00 0.00 1.40
183 184 7.302524 TCTTAATGTTCGTGCCAACTTAAATC 58.697 34.615 0.00 0.00 0.00 2.17
184 185 5.446143 AATGTTCGTGCCAACTTAAATCA 57.554 34.783 0.00 0.00 0.00 2.57
191 192 7.851387 TCGTGCCAACTTAAATCATATACAA 57.149 32.000 0.00 0.00 0.00 2.41
193 194 8.394877 TCGTGCCAACTTAAATCATATACAAAG 58.605 33.333 0.00 0.00 0.00 2.77
194 195 7.643764 CGTGCCAACTTAAATCATATACAAAGG 59.356 37.037 0.00 0.00 0.00 3.11
195 196 8.466798 GTGCCAACTTAAATCATATACAAAGGT 58.533 33.333 0.00 0.00 0.00 3.50
196 197 9.030452 TGCCAACTTAAATCATATACAAAGGTT 57.970 29.630 0.00 0.00 0.00 3.50
197 198 9.301153 GCCAACTTAAATCATATACAAAGGTTG 57.699 33.333 0.00 0.00 0.00 3.77
206 207 8.931385 ATCATATACAAAGGTTGTTTGATTGC 57.069 30.769 4.55 0.00 42.22 3.56
208 209 9.237187 TCATATACAAAGGTTGTTTGATTGCTA 57.763 29.630 4.55 0.00 42.22 3.49
236 1161 8.558973 AGAGAAAATACACAAATCTTCCTCAG 57.441 34.615 0.00 0.00 0.00 3.35
321 1255 9.985730 CATATATTGCAATCCTACAAACCAAAT 57.014 29.630 16.86 1.45 0.00 2.32
390 5228 2.417719 CTTTGGAACTTCGAGACCCTG 58.582 52.381 0.00 0.00 0.00 4.45
655 5589 5.498393 AGAAGCTGATGTGATGTGAGAAAT 58.502 37.500 0.00 0.00 0.00 2.17
704 5638 6.391227 AGCAACTTAATAGCAACAGTTGTT 57.609 33.333 14.88 11.40 45.31 2.83
743 5677 1.883084 GAGCCGGTAACCAGATGCG 60.883 63.158 1.90 0.00 0.00 4.73
883 5829 4.479619 CATTCAACTAGCTTGGCTGTTTC 58.520 43.478 0.00 0.00 40.10 2.78
911 5857 1.738350 TGTTGAAAGTTGAAACCGCGA 59.262 42.857 8.23 0.00 0.00 5.87
944 5891 3.159213 TGACCAGACCATTGAGCAATT 57.841 42.857 0.00 0.00 0.00 2.32
957 5905 7.560991 ACCATTGAGCAATTATCCTGTATTTGA 59.439 33.333 0.00 0.00 0.00 2.69
1012 5965 3.710165 TCAGTTCATCATGCATCTCCTCT 59.290 43.478 0.00 0.00 0.00 3.69
1185 6141 4.569719 ATCCTCCGGAAACACTAACAAT 57.430 40.909 5.23 0.00 34.34 2.71
2134 7111 7.543756 TGCAAAAGTAGAAGTTGCTAAAAGTT 58.456 30.769 8.84 0.00 46.19 2.66
2217 7194 2.092968 TGGTGGATGTTCTATCTGGCAC 60.093 50.000 0.00 0.00 0.00 5.01
2335 7315 7.856556 TCAAAGTTTGGAAAACAACAGAAAAC 58.143 30.769 15.47 0.00 39.19 2.43
2889 7875 8.962884 ACTGCATCATACACTGTGATATTAAA 57.037 30.769 15.86 0.00 34.68 1.52
3126 8112 1.518572 CTCGTGCGGACCATGTACC 60.519 63.158 0.00 0.00 0.00 3.34
3145 8131 1.667236 CAGCGATGGCAACCTTGATA 58.333 50.000 1.50 0.00 43.41 2.15
3318 8311 2.648059 CCAACAATGGGAGAGGTGATC 58.352 52.381 0.00 0.00 43.51 2.92
3439 8432 4.273148 TCTCAAGGGAAACTAGCTCAAC 57.727 45.455 0.00 0.00 0.00 3.18
3457 8450 6.261826 AGCTCAACTGAATGCCTAAATGATAC 59.738 38.462 0.00 0.00 0.00 2.24
3458 8451 6.261826 GCTCAACTGAATGCCTAAATGATACT 59.738 38.462 0.00 0.00 0.00 2.12
3459 8452 7.519649 GCTCAACTGAATGCCTAAATGATACTC 60.520 40.741 0.00 0.00 0.00 2.59
3460 8453 6.767902 TCAACTGAATGCCTAAATGATACTCC 59.232 38.462 0.00 0.00 0.00 3.85
3461 8454 5.625150 ACTGAATGCCTAAATGATACTCCC 58.375 41.667 0.00 0.00 0.00 4.30
3462 8455 5.370880 ACTGAATGCCTAAATGATACTCCCT 59.629 40.000 0.00 0.00 0.00 4.20
3463 8456 5.869579 TGAATGCCTAAATGATACTCCCTC 58.130 41.667 0.00 0.00 0.00 4.30
3467 8460 3.830755 GCCTAAATGATACTCCCTCCGTA 59.169 47.826 0.00 0.00 0.00 4.02
3468 8461 4.282703 GCCTAAATGATACTCCCTCCGTAA 59.717 45.833 0.00 0.00 0.00 3.18
3469 8462 5.221581 GCCTAAATGATACTCCCTCCGTAAA 60.222 44.000 0.00 0.00 0.00 2.01
3470 8463 6.456501 CCTAAATGATACTCCCTCCGTAAAG 58.543 44.000 0.00 0.00 0.00 1.85
3471 8464 6.267014 CCTAAATGATACTCCCTCCGTAAAGA 59.733 42.308 0.00 0.00 0.00 2.52
3472 8465 6.555463 AAATGATACTCCCTCCGTAAAGAA 57.445 37.500 0.00 0.00 0.00 2.52
3473 8466 6.555463 AATGATACTCCCTCCGTAAAGAAA 57.445 37.500 0.00 0.00 0.00 2.52
3476 8469 7.850935 TGATACTCCCTCCGTAAAGAAATAT 57.149 36.000 0.00 0.00 0.00 1.28
3477 8470 8.945195 TGATACTCCCTCCGTAAAGAAATATA 57.055 34.615 0.00 0.00 0.00 0.86
3478 8471 9.370930 TGATACTCCCTCCGTAAAGAAATATAA 57.629 33.333 0.00 0.00 0.00 0.98
3479 8472 9.857957 GATACTCCCTCCGTAAAGAAATATAAG 57.142 37.037 0.00 0.00 0.00 1.73
3480 8473 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
3481 8474 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
3482 8475 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
3483 8476 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
3484 8477 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
3485 8478 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
3486 8479 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
3487 8480 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
3488 8481 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
3489 8482 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
3501 8494 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
3502 8495 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
3535 8528 8.964476 ACACACTTATATTTCATTACAGAGGG 57.036 34.615 0.00 0.00 0.00 4.30
3536 8529 8.768397 ACACACTTATATTTCATTACAGAGGGA 58.232 33.333 0.00 0.00 0.00 4.20
3537 8530 9.265901 CACACTTATATTTCATTACAGAGGGAG 57.734 37.037 0.00 0.00 0.00 4.30
3538 8531 8.993424 ACACTTATATTTCATTACAGAGGGAGT 58.007 33.333 0.00 0.00 0.00 3.85
3625 8647 7.029563 GCTGGAGATAAATTTGTGTTACTTGG 58.970 38.462 0.00 0.00 0.00 3.61
3643 8665 2.147958 TGGAAAGGTGTGATGCGTTAC 58.852 47.619 0.00 0.00 0.00 2.50
3652 8674 4.436852 GGTGTGATGCGTTACAATGTTAGG 60.437 45.833 4.93 0.00 0.00 2.69
3697 8735 5.804944 AATGACTCTGCTATGCTCTGTAT 57.195 39.130 0.00 0.00 0.00 2.29
3698 8736 6.907853 AATGACTCTGCTATGCTCTGTATA 57.092 37.500 0.00 0.00 0.00 1.47
3728 8766 2.358322 AATTGTTTGTCTCCCGGTGT 57.642 45.000 0.00 0.00 0.00 4.16
3730 8768 0.531090 TTGTTTGTCTCCCGGTGTCG 60.531 55.000 0.00 0.00 0.00 4.35
3739 8777 1.681793 CTCCCGGTGTCGATGTATCTT 59.318 52.381 0.00 0.00 39.00 2.40
3772 8810 4.163441 TGACAGGTTCCATGAGAAACAA 57.837 40.909 12.60 0.00 45.37 2.83
3776 8814 3.636300 CAGGTTCCATGAGAAACAAACCA 59.364 43.478 12.60 0.00 45.37 3.67
3778 8816 4.714308 AGGTTCCATGAGAAACAAACCAAA 59.286 37.500 12.60 0.00 45.37 3.28
3784 8822 6.098124 TCCATGAGAAACAAACCAAAATGACT 59.902 34.615 0.00 0.00 0.00 3.41
3785 8823 6.421801 CCATGAGAAACAAACCAAAATGACTC 59.578 38.462 0.00 0.00 0.00 3.36
3788 8826 5.906073 AGAAACAAACCAAAATGACTCTGG 58.094 37.500 0.00 0.00 36.24 3.86
3792 8830 3.806949 AACCAAAATGACTCTGGCCTA 57.193 42.857 3.32 0.00 33.19 3.93
3797 8835 3.567478 AAATGACTCTGGCCTATGACC 57.433 47.619 3.32 0.00 0.00 4.02
3799 8837 3.619900 ATGACTCTGGCCTATGACCTA 57.380 47.619 3.32 0.00 0.00 3.08
3800 8838 3.619900 TGACTCTGGCCTATGACCTAT 57.380 47.619 3.32 0.00 0.00 2.57
3801 8839 3.234353 TGACTCTGGCCTATGACCTATG 58.766 50.000 3.32 0.00 0.00 2.23
3802 8840 3.117131 TGACTCTGGCCTATGACCTATGA 60.117 47.826 3.32 0.00 0.00 2.15
3803 8841 3.505386 ACTCTGGCCTATGACCTATGAG 58.495 50.000 3.32 0.00 0.00 2.90
3805 8843 4.202770 ACTCTGGCCTATGACCTATGAGAT 60.203 45.833 3.32 0.00 0.00 2.75
3813 8851 6.070881 GCCTATGACCTATGAGATCATGACTT 60.071 42.308 0.00 0.00 27.69 3.01
3814 8852 7.526860 GCCTATGACCTATGAGATCATGACTTT 60.527 40.741 0.00 0.00 27.69 2.66
3822 8860 7.331440 CCTATGAGATCATGACTTTGATAGTGC 59.669 40.741 0.00 0.00 36.48 4.40
3831 8869 0.245266 TTTGATAGTGCGACAGCCGA 59.755 50.000 0.00 0.00 44.33 5.54
3835 8873 2.324332 ATAGTGCGACAGCCGACGAG 62.324 60.000 0.00 0.00 44.33 4.18
3875 8914 2.089201 GGGGTGTAAGAAATGGAACCG 58.911 52.381 0.00 0.00 0.00 4.44
3879 8918 1.810151 TGTAAGAAATGGAACCGCAGC 59.190 47.619 0.00 0.00 0.00 5.25
3884 8923 2.546645 AAATGGAACCGCAGCGCATG 62.547 55.000 11.47 6.31 0.00 4.06
3894 8933 1.513373 CAGCGCATGCATGTGTGAC 60.513 57.895 33.99 21.23 46.23 3.67
3921 8964 2.084546 GGTTGCCTTGACACTCATACC 58.915 52.381 0.00 0.00 0.00 2.73
3923 8966 3.146066 GTTGCCTTGACACTCATACCAA 58.854 45.455 0.00 0.00 0.00 3.67
3924 8967 3.057969 TGCCTTGACACTCATACCAAG 57.942 47.619 0.00 0.00 36.64 3.61
3925 8968 2.371841 TGCCTTGACACTCATACCAAGT 59.628 45.455 0.00 0.00 35.50 3.16
3926 8969 3.580895 TGCCTTGACACTCATACCAAGTA 59.419 43.478 0.00 0.00 35.50 2.24
3928 8971 5.186198 GCCTTGACACTCATACCAAGTAAT 58.814 41.667 0.00 0.00 35.50 1.89
3944 8987 0.476338 TAATGGTGGTGTGCTGGTGT 59.524 50.000 0.00 0.00 0.00 4.16
3946 8989 2.972505 GGTGGTGTGCTGGTGTCG 60.973 66.667 0.00 0.00 0.00 4.35
4003 9046 1.363885 CGGTAGTAGCAAAACGGGGC 61.364 60.000 0.00 0.00 0.00 5.80
4007 9050 3.358707 TAGCAAAACGGGGCGCAC 61.359 61.111 10.83 4.83 34.54 5.34
4040 9083 1.380302 GGTTCACAGGGGAGCACAT 59.620 57.895 0.00 0.00 0.00 3.21
4065 9108 1.688735 TCAAGGCGATGATACTGGAGG 59.311 52.381 0.00 0.00 0.00 4.30
4071 9114 2.288518 GCGATGATACTGGAGGGAAGAC 60.289 54.545 0.00 0.00 0.00 3.01
4206 9256 4.957296 TGAGGGGAAAATTAGATACGAGC 58.043 43.478 0.00 0.00 0.00 5.03
4240 9290 4.143333 ACGCGAACGGAGATGGGG 62.143 66.667 15.93 0.00 46.04 4.96
4265 9315 2.961531 TTTCCATCGGTCAGGGAAAA 57.038 45.000 2.79 0.00 45.10 2.29
4272 9322 1.906105 CGGTCAGGGAAAATCGGGGA 61.906 60.000 0.00 0.00 0.00 4.81
4305 9361 3.367743 CGTGTCGGGGGAGTCGAA 61.368 66.667 0.00 0.00 38.42 3.71
4358 9418 1.981256 TGGAAGTTGGGAAAGTGAGC 58.019 50.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.544691 GCCTTGACTCCGACTAGTTGA 59.455 52.381 12.02 3.90 0.00 3.18
3 4 1.272490 TGCCTTGACTCCGACTAGTTG 59.728 52.381 2.78 2.78 0.00 3.16
6 7 0.888619 TGTGCCTTGACTCCGACTAG 59.111 55.000 0.00 0.00 0.00 2.57
7 8 1.334160 TTGTGCCTTGACTCCGACTA 58.666 50.000 0.00 0.00 0.00 2.59
8 9 0.468226 TTTGTGCCTTGACTCCGACT 59.532 50.000 0.00 0.00 0.00 4.18
9 10 1.523758 ATTTGTGCCTTGACTCCGAC 58.476 50.000 0.00 0.00 0.00 4.79
10 11 3.627395 ATATTTGTGCCTTGACTCCGA 57.373 42.857 0.00 0.00 0.00 4.55
11 12 4.438744 GGAAATATTTGTGCCTTGACTCCG 60.439 45.833 5.17 0.00 0.00 4.63
12 13 4.706962 AGGAAATATTTGTGCCTTGACTCC 59.293 41.667 5.17 0.00 0.00 3.85
13 14 5.904362 AGGAAATATTTGTGCCTTGACTC 57.096 39.130 5.17 0.00 0.00 3.36
14 15 5.185828 GGAAGGAAATATTTGTGCCTTGACT 59.814 40.000 19.26 1.62 38.96 3.41
15 16 5.410924 GGAAGGAAATATTTGTGCCTTGAC 58.589 41.667 19.26 11.16 38.96 3.18
16 17 4.466015 GGGAAGGAAATATTTGTGCCTTGA 59.534 41.667 19.26 0.00 38.96 3.02
17 18 4.383010 GGGGAAGGAAATATTTGTGCCTTG 60.383 45.833 19.26 0.00 38.96 3.61
19 20 3.374764 GGGGAAGGAAATATTTGTGCCT 58.625 45.455 5.17 3.25 0.00 4.75
20 21 2.100749 CGGGGAAGGAAATATTTGTGCC 59.899 50.000 5.17 5.40 0.00 5.01
21 22 2.481276 GCGGGGAAGGAAATATTTGTGC 60.481 50.000 5.17 0.00 0.00 4.57
22 23 2.100749 GGCGGGGAAGGAAATATTTGTG 59.899 50.000 5.17 0.00 0.00 3.33
23 24 2.291930 TGGCGGGGAAGGAAATATTTGT 60.292 45.455 5.17 0.00 0.00 2.83
24 25 2.100749 GTGGCGGGGAAGGAAATATTTG 59.899 50.000 5.17 0.00 0.00 2.32
25 26 2.384828 GTGGCGGGGAAGGAAATATTT 58.615 47.619 0.00 0.00 0.00 1.40
29 30 2.359011 GGTGGCGGGGAAGGAAAT 59.641 61.111 0.00 0.00 0.00 2.17
30 31 3.179339 TGGTGGCGGGGAAGGAAA 61.179 61.111 0.00 0.00 0.00 3.13
31 32 3.646715 CTGGTGGCGGGGAAGGAA 61.647 66.667 0.00 0.00 0.00 3.36
54 55 4.388499 TCCTCCGTTTGCCGCTCC 62.388 66.667 0.00 0.00 34.38 4.70
55 56 2.815647 CTCCTCCGTTTGCCGCTC 60.816 66.667 0.00 0.00 34.38 5.03
57 58 2.815647 CTCTCCTCCGTTTGCCGC 60.816 66.667 0.00 0.00 34.38 6.53
58 59 2.125512 CCTCTCCTCCGTTTGCCG 60.126 66.667 0.00 0.00 0.00 5.69
59 60 1.376037 CACCTCTCCTCCGTTTGCC 60.376 63.158 0.00 0.00 0.00 4.52
60 61 0.390472 CTCACCTCTCCTCCGTTTGC 60.390 60.000 0.00 0.00 0.00 3.68
61 62 0.969894 ACTCACCTCTCCTCCGTTTG 59.030 55.000 0.00 0.00 0.00 2.93
62 63 1.258676 GACTCACCTCTCCTCCGTTT 58.741 55.000 0.00 0.00 0.00 3.60
63 64 0.612453 GGACTCACCTCTCCTCCGTT 60.612 60.000 0.00 0.00 35.41 4.44
64 65 1.000646 GGACTCACCTCTCCTCCGT 60.001 63.158 0.00 0.00 35.41 4.69
65 66 1.000771 TGGACTCACCTCTCCTCCG 60.001 63.158 0.00 0.00 39.86 4.63
66 67 1.316706 CGTGGACTCACCTCTCCTCC 61.317 65.000 0.00 0.00 40.65 4.30
67 68 1.316706 CCGTGGACTCACCTCTCCTC 61.317 65.000 0.00 0.00 40.65 3.71
75 76 3.050275 GCAAGCCCGTGGACTCAC 61.050 66.667 0.00 0.00 40.36 3.51
90 91 1.519246 CTCTCAATCTCCGCCAGCA 59.481 57.895 0.00 0.00 0.00 4.41
94 95 0.757188 TCCTCCTCTCAATCTCCGCC 60.757 60.000 0.00 0.00 0.00 6.13
97 98 1.416030 GCCTTCCTCCTCTCAATCTCC 59.584 57.143 0.00 0.00 0.00 3.71
103 104 2.188817 GGTAAAGCCTTCCTCCTCTCA 58.811 52.381 0.00 0.00 0.00 3.27
136 137 2.112691 AGAGACTTTCCTTCCCCTCTCA 59.887 50.000 0.00 0.00 0.00 3.27
160 161 6.971602 TGATTTAAGTTGGCACGAACATTAA 58.028 32.000 0.00 0.00 0.00 1.40
167 168 7.851387 TTGTATATGATTTAAGTTGGCACGA 57.149 32.000 0.00 0.00 0.00 4.35
168 169 7.643764 CCTTTGTATATGATTTAAGTTGGCACG 59.356 37.037 0.00 0.00 0.00 5.34
170 171 8.588290 ACCTTTGTATATGATTTAAGTTGGCA 57.412 30.769 0.00 0.00 0.00 4.92
171 172 9.301153 CAACCTTTGTATATGATTTAAGTTGGC 57.699 33.333 0.00 0.00 0.00 4.52
180 181 9.369904 GCAATCAAACAACCTTTGTATATGATT 57.630 29.630 15.12 15.12 44.59 2.57
181 182 8.752187 AGCAATCAAACAACCTTTGTATATGAT 58.248 29.630 8.16 8.16 44.59 2.45
182 183 8.121305 AGCAATCAAACAACCTTTGTATATGA 57.879 30.769 0.00 0.00 44.59 2.15
183 184 9.853555 TTAGCAATCAAACAACCTTTGTATATG 57.146 29.630 0.00 0.00 44.59 1.78
191 192 7.346751 TCTCTTTTAGCAATCAAACAACCTT 57.653 32.000 0.00 0.00 0.00 3.50
193 194 8.419076 TTTTCTCTTTTAGCAATCAAACAACC 57.581 30.769 0.00 0.00 0.00 3.77
210 211 8.924511 TGAGGAAGATTTGTGTATTTTCTCTT 57.075 30.769 0.00 0.00 0.00 2.85
211 212 8.378565 TCTGAGGAAGATTTGTGTATTTTCTCT 58.621 33.333 0.00 0.00 0.00 3.10
321 1255 6.433847 TTTCTCCTACATCACCTCTTTGAA 57.566 37.500 0.00 0.00 0.00 2.69
378 5216 2.558795 TCACTTTCTCAGGGTCTCGAAG 59.441 50.000 0.00 0.00 0.00 3.79
390 5228 8.660373 CAATCTTGTACCTGTTATCACTTTCTC 58.340 37.037 0.00 0.00 0.00 2.87
437 5370 2.942376 CAGCAGGCCATCACGTATTTTA 59.058 45.455 5.01 0.00 0.00 1.52
558 5491 2.096248 TGAGAAAACTGCCGTTTGGTT 58.904 42.857 7.03 0.00 42.28 3.67
625 5558 1.693606 TCACATCAGCTTCTCACCACA 59.306 47.619 0.00 0.00 0.00 4.17
655 5589 4.402829 TGTTTTCAAGCTGGCTGGTATAA 58.597 39.130 0.00 0.00 0.00 0.98
704 5638 4.580868 TCACGTCAAAGGTATTTGCCATA 58.419 39.130 0.00 0.00 44.56 2.74
743 5677 3.059352 AGGTGTGGACATGAGCTTTAC 57.941 47.619 0.00 0.00 0.00 2.01
839 5785 3.564225 GGACATTTATTCCGGTGGTGATC 59.436 47.826 0.00 0.00 0.00 2.92
883 5829 5.060446 GGTTTCAACTTTCAACAGTCAAACG 59.940 40.000 0.00 0.00 0.00 3.60
911 5857 4.225042 TGGTCTGGTCATGCAGTAAATAGT 59.775 41.667 0.00 0.00 0.00 2.12
944 5891 3.071602 GCAGAGGCCTCAAATACAGGATA 59.928 47.826 33.90 0.00 31.91 2.59
1012 5965 5.473931 GAAGAGGAGCAATGCGATATCTAA 58.526 41.667 0.00 0.00 0.00 2.10
1071 6024 4.424711 TGGCCGGCCAAGATGGTC 62.425 66.667 45.50 16.54 44.12 4.02
1185 6141 1.502690 ACCATATGCCGAGGTACCAA 58.497 50.000 15.94 0.00 32.92 3.67
1526 6485 8.454106 CGATTGAGTTCTTCCAAGAAACAATAT 58.546 33.333 22.04 11.86 45.77 1.28
1770 6735 3.185246 ACATGGCGAGTAATCCTCTTG 57.815 47.619 0.00 0.00 38.11 3.02
2134 7111 4.270566 GCAAAATTGTGCACACTCATTCAA 59.729 37.500 21.56 1.85 44.29 2.69
2217 7194 4.152223 TGTCGTATGTTGAGCAGTTCATTG 59.848 41.667 0.00 0.00 35.27 2.82
2335 7315 1.811965 TGCAACTCCAATGACAATCCG 59.188 47.619 0.00 0.00 0.00 4.18
2516 7502 6.520231 GCCTCTCCCTAACTTCTCTGTAAAAA 60.520 42.308 0.00 0.00 0.00 1.94
2889 7875 4.082571 GCATCAAGCAGTATGTTTTCTGGT 60.083 41.667 0.00 0.00 37.46 4.00
3126 8112 1.667236 TATCAAGGTTGCCATCGCTG 58.333 50.000 0.00 0.00 35.36 5.18
3145 8131 1.412343 GGCATGCACGGGGAAATAAAT 59.588 47.619 21.36 0.00 0.00 1.40
3316 8309 4.889780 ACTAGACCCTCAAGAATCTGGAT 58.110 43.478 0.00 0.00 0.00 3.41
3318 8311 4.467795 TCAACTAGACCCTCAAGAATCTGG 59.532 45.833 0.00 0.00 0.00 3.86
3408 8401 7.280428 GCTAGTTTCCCTTGAGAAATAGGTTAC 59.720 40.741 0.00 0.00 38.01 2.50
3439 8432 5.874093 AGGGAGTATCATTTAGGCATTCAG 58.126 41.667 0.00 0.00 36.25 3.02
3457 8450 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
3458 8451 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
3459 8452 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
3460 8453 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
3461 8454 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
3462 8455 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
3463 8456 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
3476 8469 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
3477 8470 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
3478 8471 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
3509 8502 9.396022 CCCTCTGTAATGAAATATAAGTGTGTT 57.604 33.333 0.00 0.00 0.00 3.32
3510 8503 8.768397 TCCCTCTGTAATGAAATATAAGTGTGT 58.232 33.333 0.00 0.00 0.00 3.72
3511 8504 9.265901 CTCCCTCTGTAATGAAATATAAGTGTG 57.734 37.037 0.00 0.00 0.00 3.82
3512 8505 8.993424 ACTCCCTCTGTAATGAAATATAAGTGT 58.007 33.333 0.00 0.00 0.00 3.55
3520 8513 9.159254 TGTATCATACTCCCTCTGTAATGAAAT 57.841 33.333 0.00 0.00 0.00 2.17
3521 8514 8.547481 TGTATCATACTCCCTCTGTAATGAAA 57.453 34.615 0.00 0.00 0.00 2.69
3522 8515 8.727100 ATGTATCATACTCCCTCTGTAATGAA 57.273 34.615 0.00 0.00 0.00 2.57
3523 8516 9.997172 ATATGTATCATACTCCCTCTGTAATGA 57.003 33.333 0.00 0.00 0.00 2.57
3525 8518 9.775539 ACATATGTATCATACTCCCTCTGTAAT 57.224 33.333 6.56 0.00 0.00 1.89
3526 8519 9.601810 AACATATGTATCATACTCCCTCTGTAA 57.398 33.333 9.21 0.00 0.00 2.41
3527 8520 9.601810 AAACATATGTATCATACTCCCTCTGTA 57.398 33.333 9.21 0.00 0.00 2.74
3528 8521 8.497910 AAACATATGTATCATACTCCCTCTGT 57.502 34.615 9.21 0.00 0.00 3.41
3564 8584 9.396022 CACATTTCCATAGTAAATACAACTCCT 57.604 33.333 0.00 0.00 0.00 3.69
3565 8585 9.391006 TCACATTTCCATAGTAAATACAACTCC 57.609 33.333 0.00 0.00 0.00 3.85
3625 8647 3.889196 TTGTAACGCATCACACCTTTC 57.111 42.857 0.00 0.00 0.00 2.62
3630 8652 4.647964 CCTAACATTGTAACGCATCACAC 58.352 43.478 0.00 0.00 0.00 3.82
3728 8766 9.302345 GTCAACTCTTATCAAAAGATACATCGA 57.698 33.333 0.00 0.00 0.00 3.59
3739 8777 5.935945 TGGAACCTGTCAACTCTTATCAAA 58.064 37.500 0.00 0.00 0.00 2.69
3772 8810 2.683211 AGGCCAGAGTCATTTTGGTT 57.317 45.000 5.01 0.00 34.43 3.67
3776 8814 3.525199 AGGTCATAGGCCAGAGTCATTTT 59.475 43.478 5.01 0.00 0.00 1.82
3778 8816 2.769209 AGGTCATAGGCCAGAGTCATT 58.231 47.619 5.01 0.00 0.00 2.57
3784 8822 3.903530 TCTCATAGGTCATAGGCCAGA 57.096 47.619 5.01 0.00 0.00 3.86
3785 8823 4.092279 TGATCTCATAGGTCATAGGCCAG 58.908 47.826 5.01 0.00 0.00 4.85
3788 8826 5.421693 AGTCATGATCTCATAGGTCATAGGC 59.578 44.000 0.00 0.65 34.26 3.93
3792 8830 7.370905 TCAAAGTCATGATCTCATAGGTCAT 57.629 36.000 0.00 0.00 34.26 3.06
3797 8835 7.062022 CGCACTATCAAAGTCATGATCTCATAG 59.938 40.741 0.00 4.66 40.44 2.23
3799 8837 5.695363 CGCACTATCAAAGTCATGATCTCAT 59.305 40.000 0.00 0.00 40.44 2.90
3800 8838 5.045872 CGCACTATCAAAGTCATGATCTCA 58.954 41.667 0.00 0.00 40.44 3.27
3801 8839 5.174761 GTCGCACTATCAAAGTCATGATCTC 59.825 44.000 0.00 0.00 40.44 2.75
3802 8840 5.046529 GTCGCACTATCAAAGTCATGATCT 58.953 41.667 0.00 0.00 40.44 2.75
3803 8841 4.805719 TGTCGCACTATCAAAGTCATGATC 59.194 41.667 0.00 0.00 40.44 2.92
3805 8843 4.176271 CTGTCGCACTATCAAAGTCATGA 58.824 43.478 0.00 0.00 35.76 3.07
3813 8851 0.457853 GTCGGCTGTCGCACTATCAA 60.458 55.000 0.00 0.00 39.05 2.57
3814 8852 1.138883 GTCGGCTGTCGCACTATCA 59.861 57.895 0.00 0.00 39.05 2.15
3845 8883 2.075355 CTTACACCCCCAAGCCACCA 62.075 60.000 0.00 0.00 0.00 4.17
3858 8897 2.414161 GCTGCGGTTCCATTTCTTACAC 60.414 50.000 0.00 0.00 0.00 2.90
3879 8918 0.587985 CATCGTCACACATGCATGCG 60.588 55.000 26.53 19.79 0.00 4.73
3884 8923 0.955428 ACCCACATCGTCACACATGC 60.955 55.000 0.00 0.00 0.00 4.06
3891 8930 0.888736 CAAGGCAACCCACATCGTCA 60.889 55.000 0.00 0.00 37.17 4.35
3892 8931 0.605319 TCAAGGCAACCCACATCGTC 60.605 55.000 0.00 0.00 37.17 4.20
3894 8933 0.888736 TGTCAAGGCAACCCACATCG 60.889 55.000 0.00 0.00 37.17 3.84
3921 8964 1.541147 CCAGCACACCACCATTACTTG 59.459 52.381 0.00 0.00 0.00 3.16
3923 8966 0.771127 ACCAGCACACCACCATTACT 59.229 50.000 0.00 0.00 0.00 2.24
3924 8967 0.881118 CACCAGCACACCACCATTAC 59.119 55.000 0.00 0.00 0.00 1.89
3925 8968 0.476338 ACACCAGCACACCACCATTA 59.524 50.000 0.00 0.00 0.00 1.90
3926 8969 0.823356 GACACCAGCACACCACCATT 60.823 55.000 0.00 0.00 0.00 3.16
3928 8971 2.191908 GACACCAGCACACCACCA 59.808 61.111 0.00 0.00 0.00 4.17
3944 8987 3.353836 GGCTTCGCCTTGCAACGA 61.354 61.111 7.96 7.96 46.69 3.85
3989 9032 3.358707 TGCGCCCCGTTTTGCTAC 61.359 61.111 4.18 0.00 0.00 3.58
4003 9046 4.459331 CATTGCCGTTCGGGTGCG 62.459 66.667 13.16 0.00 38.44 5.34
4007 9050 2.195123 GAACCACATTGCCGTTCGGG 62.195 60.000 13.16 0.00 39.58 5.14
4040 9083 4.404394 TCCAGTATCATCGCCTTGACTTTA 59.596 41.667 0.00 0.00 0.00 1.85
4065 9108 1.269998 AGTCTGTGTACAGCGTCTTCC 59.730 52.381 7.14 0.00 43.46 3.46
4071 9114 0.729478 CGGTGAGTCTGTGTACAGCG 60.729 60.000 7.14 0.00 44.78 5.18
4114 9157 0.380378 TCACTGCCGTGAAAAACTGC 59.620 50.000 8.67 0.00 46.61 4.40
4133 9176 1.716826 GAGATCGTCGCCGTCTTCCT 61.717 60.000 0.00 0.00 35.01 3.36
4230 9280 1.984288 GAAACCCTCCCCCATCTCCG 61.984 65.000 0.00 0.00 0.00 4.63
4240 9290 0.107654 CTGACCGATGGAAACCCTCC 60.108 60.000 0.00 0.00 45.64 4.30
4292 9342 2.831742 CCGATTCGACTCCCCCGA 60.832 66.667 7.83 0.00 0.00 5.14
4335 9391 1.812571 CACTTTCCCAACTTCCATCCG 59.187 52.381 0.00 0.00 0.00 4.18
4342 9402 1.543429 CCTCGCTCACTTTCCCAACTT 60.543 52.381 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.