Multiple sequence alignment - TraesCS7D01G421900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G421900 chr7D 100.000 3452 0 0 1 3452 541493741 541497192 0.000000e+00 6375.0
1 TraesCS7D01G421900 chr7D 86.952 1824 148 45 994 2786 540716451 540714687 0.000000e+00 1967.0
2 TraesCS7D01G421900 chr7D 86.790 1302 117 31 938 2211 540793575 540792301 0.000000e+00 1400.0
3 TraesCS7D01G421900 chr7D 88.704 540 26 6 2207 2734 540792230 540791714 8.130000e-176 627.0
4 TraesCS7D01G421900 chr7D 85.271 387 50 5 2839 3225 540714687 540714308 3.230000e-105 392.0
5 TraesCS7D01G421900 chr7D 80.142 141 20 7 2235 2368 421790101 421789962 7.880000e-17 99.0
6 TraesCS7D01G421900 chr7A 90.131 2908 164 66 572 3425 624806903 624809741 0.000000e+00 3666.0
7 TraesCS7D01G421900 chr7A 86.816 1828 152 36 984 2786 622373504 622371741 0.000000e+00 1958.0
8 TraesCS7D01G421900 chr7A 86.231 1300 125 35 938 2211 623323413 623322142 0.000000e+00 1360.0
9 TraesCS7D01G421900 chr7A 85.894 397 48 8 2839 3229 622371741 622371347 1.920000e-112 416.0
10 TraesCS7D01G421900 chr7A 90.604 298 26 2 2207 2502 623322071 623321774 8.980000e-106 394.0
11 TraesCS7D01G421900 chr7A 89.286 252 15 5 2494 2734 623321666 623321416 4.330000e-79 305.0
12 TraesCS7D01G421900 chr7A 81.746 252 21 8 2926 3154 623297967 623297718 1.640000e-43 187.0
13 TraesCS7D01G421900 chr7A 100.000 30 0 0 2911 2940 623320844 623320815 4.810000e-04 56.5
14 TraesCS7D01G421900 chr7B 90.619 2132 146 24 1344 3452 585487200 585489300 0.000000e+00 2780.0
15 TraesCS7D01G421900 chr7B 86.024 1245 106 28 1362 2574 584036600 584035392 0.000000e+00 1273.0
16 TraesCS7D01G421900 chr7B 83.022 1178 118 58 1088 2211 584270297 584269148 0.000000e+00 992.0
17 TraesCS7D01G421900 chr7B 87.636 736 65 16 547 1264 585486426 585487153 0.000000e+00 832.0
18 TraesCS7D01G421900 chr7B 90.959 542 33 7 2207 2734 584269077 584268538 0.000000e+00 715.0
19 TraesCS7D01G421900 chr7B 86.181 398 45 7 2839 3229 584035231 584034837 4.120000e-114 422.0
20 TraesCS7D01G421900 chr7B 89.825 285 23 3 984 1265 584036973 584036692 9.110000e-96 361.0
21 TraesCS7D01G421900 chr7B 87.043 301 32 6 2927 3225 584262750 584262455 1.990000e-87 333.0
22 TraesCS7D01G421900 chr7B 93.243 148 9 1 2634 2780 584035386 584035239 2.090000e-52 217.0
23 TraesCS7D01G421900 chr3D 76.129 155 29 8 1100 1250 93361268 93361118 1.330000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G421900 chr7D 541493741 541497192 3451 False 6375.000 6375 100.00000 1 3452 1 chr7D.!!$F1 3451
1 TraesCS7D01G421900 chr7D 540714308 540716451 2143 True 1179.500 1967 86.11150 994 3225 2 chr7D.!!$R2 2231
2 TraesCS7D01G421900 chr7D 540791714 540793575 1861 True 1013.500 1400 87.74700 938 2734 2 chr7D.!!$R3 1796
3 TraesCS7D01G421900 chr7A 624806903 624809741 2838 False 3666.000 3666 90.13100 572 3425 1 chr7A.!!$F1 2853
4 TraesCS7D01G421900 chr7A 622371347 622373504 2157 True 1187.000 1958 86.35500 984 3229 2 chr7A.!!$R2 2245
5 TraesCS7D01G421900 chr7A 623320815 623323413 2598 True 528.875 1360 91.53025 938 2940 4 chr7A.!!$R3 2002
6 TraesCS7D01G421900 chr7B 585486426 585489300 2874 False 1806.000 2780 89.12750 547 3452 2 chr7B.!!$F1 2905
7 TraesCS7D01G421900 chr7B 584268538 584270297 1759 True 853.500 992 86.99050 1088 2734 2 chr7B.!!$R3 1646
8 TraesCS7D01G421900 chr7B 584034837 584036973 2136 True 568.250 1273 88.81825 984 3229 4 chr7B.!!$R2 2245

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 290 0.036732 GTGTGAATGAGGAGTGGGCA 59.963 55.0 0.0 0.0 0.00 5.36 F
315 316 0.042731 CCAGAGGGTGAGGGGAGTTA 59.957 60.0 0.0 0.0 0.00 2.24 F
421 422 0.107214 TTTCCTGCGAATAGGCCCAG 60.107 55.0 0.0 0.0 37.76 4.45 F
1036 1106 0.107606 TCTCCTCCTCCTCTTCGTCG 60.108 60.0 0.0 0.0 0.00 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 1987 1.009829 GTGGCGTTGATGATGGTCTC 58.990 55.000 0.00 0.0 0.0 3.36 R
2120 2309 2.728817 GGTATGACGCCCGGAGAG 59.271 66.667 0.73 0.0 0.0 3.20 R
2429 2694 0.620556 TGTCTGCCCATTCTTCTCCC 59.379 55.000 0.00 0.0 0.0 4.30 R
2610 3060 0.322456 TGTACCCTGCTCAACATGCC 60.322 55.000 0.00 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.038080 GGCGCAACCGAACCCAAG 62.038 66.667 10.83 0.00 36.29 3.61
18 19 2.975799 GCGCAACCGAACCCAAGA 60.976 61.111 0.30 0.00 36.29 3.02
19 20 2.943653 CGCAACCGAACCCAAGAC 59.056 61.111 0.00 0.00 36.29 3.01
20 21 1.597027 CGCAACCGAACCCAAGACT 60.597 57.895 0.00 0.00 36.29 3.24
21 22 0.320073 CGCAACCGAACCCAAGACTA 60.320 55.000 0.00 0.00 36.29 2.59
22 23 1.154197 GCAACCGAACCCAAGACTAC 58.846 55.000 0.00 0.00 0.00 2.73
23 24 1.804601 CAACCGAACCCAAGACTACC 58.195 55.000 0.00 0.00 0.00 3.18
24 25 1.071071 CAACCGAACCCAAGACTACCA 59.929 52.381 0.00 0.00 0.00 3.25
25 26 0.974383 ACCGAACCCAAGACTACCAG 59.026 55.000 0.00 0.00 0.00 4.00
26 27 0.249398 CCGAACCCAAGACTACCAGG 59.751 60.000 0.00 0.00 0.00 4.45
27 28 0.974383 CGAACCCAAGACTACCAGGT 59.026 55.000 0.00 0.00 0.00 4.00
28 29 1.067071 CGAACCCAAGACTACCAGGTC 60.067 57.143 0.00 0.00 36.56 3.85
30 31 1.645710 ACCCAAGACTACCAGGTCTG 58.354 55.000 0.00 0.00 44.67 3.51
43 44 3.123157 CAGGTCTGGATATGAAGGCAG 57.877 52.381 0.00 0.00 0.00 4.85
44 45 2.702478 CAGGTCTGGATATGAAGGCAGA 59.298 50.000 0.00 0.00 0.00 4.26
45 46 2.971330 AGGTCTGGATATGAAGGCAGAG 59.029 50.000 0.00 0.00 0.00 3.35
46 47 2.549778 GGTCTGGATATGAAGGCAGAGC 60.550 54.545 0.00 0.00 0.00 4.09
75 76 4.776322 TCACCGCATTGGCCCGAG 62.776 66.667 0.00 0.00 43.94 4.63
80 81 3.797353 GCATTGGCCCGAGGAGGA 61.797 66.667 0.00 0.00 45.00 3.71
81 82 2.507944 CATTGGCCCGAGGAGGAG 59.492 66.667 0.00 0.00 45.00 3.69
82 83 2.770048 ATTGGCCCGAGGAGGAGG 60.770 66.667 0.00 0.00 45.00 4.30
88 89 4.787280 CCGAGGAGGAGGCCTGGT 62.787 72.222 12.00 0.00 45.00 4.00
89 90 3.465403 CGAGGAGGAGGCCTGGTG 61.465 72.222 12.00 0.00 38.73 4.17
90 91 3.791586 GAGGAGGAGGCCTGGTGC 61.792 72.222 12.00 1.08 38.73 5.01
91 92 4.664267 AGGAGGAGGCCTGGTGCA 62.664 66.667 12.00 0.00 43.89 4.57
92 93 4.106925 GGAGGAGGCCTGGTGCAG 62.107 72.222 12.00 0.00 43.89 4.41
93 94 3.005539 GAGGAGGCCTGGTGCAGA 61.006 66.667 12.00 0.00 43.89 4.26
94 95 2.530151 AGGAGGCCTGGTGCAGAA 60.530 61.111 12.00 0.00 43.89 3.02
95 96 2.045536 GGAGGCCTGGTGCAGAAG 60.046 66.667 12.00 0.00 43.89 2.85
96 97 2.045536 GAGGCCTGGTGCAGAAGG 60.046 66.667 12.00 9.83 43.89 3.46
97 98 3.635268 GAGGCCTGGTGCAGAAGGG 62.635 68.421 12.00 4.05 43.89 3.95
98 99 4.748144 GGCCTGGTGCAGAAGGGG 62.748 72.222 14.89 2.43 43.89 4.79
99 100 4.748144 GCCTGGTGCAGAAGGGGG 62.748 72.222 14.89 1.15 40.77 5.40
100 101 2.935481 CCTGGTGCAGAAGGGGGA 60.935 66.667 6.70 0.00 32.44 4.81
101 102 2.352805 CTGGTGCAGAAGGGGGAC 59.647 66.667 0.00 0.00 32.44 4.46
102 103 3.612247 CTGGTGCAGAAGGGGGACG 62.612 68.421 0.00 0.00 32.44 4.79
103 104 3.319198 GGTGCAGAAGGGGGACGA 61.319 66.667 0.00 0.00 0.00 4.20
104 105 2.047179 GTGCAGAAGGGGGACGAC 60.047 66.667 0.00 0.00 0.00 4.34
105 106 3.691342 TGCAGAAGGGGGACGACG 61.691 66.667 0.00 0.00 0.00 5.12
107 108 4.796231 CAGAAGGGGGACGACGCG 62.796 72.222 3.53 3.53 0.00 6.01
129 130 4.776322 CGGCCGCCATCAGGTCAA 62.776 66.667 14.67 0.00 37.19 3.18
130 131 2.124151 GGCCGCCATCAGGTCAAT 60.124 61.111 3.91 0.00 37.19 2.57
131 132 2.484062 GGCCGCCATCAGGTCAATG 61.484 63.158 3.91 0.00 37.19 2.82
132 133 3.113745 CCGCCATCAGGTCAATGC 58.886 61.111 0.00 0.00 37.19 3.56
133 134 2.484062 CCGCCATCAGGTCAATGCC 61.484 63.158 0.00 0.00 37.19 4.40
134 135 2.827051 CGCCATCAGGTCAATGCCG 61.827 63.158 0.00 0.00 37.19 5.69
135 136 1.451927 GCCATCAGGTCAATGCCGA 60.452 57.895 0.00 0.00 37.19 5.54
136 137 0.820891 GCCATCAGGTCAATGCCGAT 60.821 55.000 0.00 0.00 37.19 4.18
137 138 0.949397 CCATCAGGTCAATGCCGATG 59.051 55.000 14.55 14.55 38.28 3.84
138 139 1.671979 CATCAGGTCAATGCCGATGT 58.328 50.000 13.91 0.00 36.15 3.06
139 140 2.019249 CATCAGGTCAATGCCGATGTT 58.981 47.619 13.91 0.00 36.15 2.71
140 141 1.452110 TCAGGTCAATGCCGATGTTG 58.548 50.000 0.00 0.00 0.00 3.33
141 142 0.452987 CAGGTCAATGCCGATGTTGG 59.547 55.000 0.00 0.00 0.00 3.77
160 161 4.729918 GAGGCCTGCCACCCACTG 62.730 72.222 12.00 0.00 38.92 3.66
164 165 3.252284 CCTGCCACCCACTGGTCT 61.252 66.667 0.00 0.00 45.57 3.85
165 166 2.833913 CCTGCCACCCACTGGTCTT 61.834 63.158 0.00 0.00 45.57 3.01
166 167 1.601759 CTGCCACCCACTGGTCTTG 60.602 63.158 0.00 0.00 45.57 3.02
167 168 2.282462 GCCACCCACTGGTCTTGG 60.282 66.667 0.00 0.00 45.57 3.61
168 169 2.829384 GCCACCCACTGGTCTTGGA 61.829 63.158 10.55 0.00 45.57 3.53
169 170 2.078452 CCACCCACTGGTCTTGGAT 58.922 57.895 2.56 0.00 45.57 3.41
170 171 0.405585 CCACCCACTGGTCTTGGATT 59.594 55.000 2.56 0.00 45.57 3.01
171 172 1.614317 CCACCCACTGGTCTTGGATTC 60.614 57.143 2.56 0.00 45.57 2.52
172 173 0.324943 ACCCACTGGTCTTGGATTCG 59.675 55.000 0.00 0.00 43.06 3.34
173 174 0.392998 CCCACTGGTCTTGGATTCGG 60.393 60.000 0.00 0.00 36.02 4.30
174 175 0.324943 CCACTGGTCTTGGATTCGGT 59.675 55.000 0.00 0.00 36.02 4.69
175 176 1.271379 CCACTGGTCTTGGATTCGGTT 60.271 52.381 0.00 0.00 36.02 4.44
176 177 1.806542 CACTGGTCTTGGATTCGGTTG 59.193 52.381 0.00 0.00 0.00 3.77
177 178 0.804989 CTGGTCTTGGATTCGGTTGC 59.195 55.000 0.00 0.00 0.00 4.17
178 179 0.400213 TGGTCTTGGATTCGGTTGCT 59.600 50.000 0.00 0.00 0.00 3.91
179 180 0.804989 GGTCTTGGATTCGGTTGCTG 59.195 55.000 0.00 0.00 0.00 4.41
180 181 1.523758 GTCTTGGATTCGGTTGCTGT 58.476 50.000 0.00 0.00 0.00 4.40
181 182 2.614481 GGTCTTGGATTCGGTTGCTGTA 60.614 50.000 0.00 0.00 0.00 2.74
182 183 2.673368 GTCTTGGATTCGGTTGCTGTAG 59.327 50.000 0.00 0.00 0.00 2.74
183 184 2.009774 CTTGGATTCGGTTGCTGTAGG 58.990 52.381 0.00 0.00 0.00 3.18
184 185 0.392461 TGGATTCGGTTGCTGTAGGC 60.392 55.000 0.00 0.00 42.22 3.93
185 186 1.429148 GGATTCGGTTGCTGTAGGCG 61.429 60.000 0.00 0.00 45.43 5.52
186 187 2.036764 GATTCGGTTGCTGTAGGCGC 62.037 60.000 0.00 0.00 45.43 6.53
187 188 2.521958 ATTCGGTTGCTGTAGGCGCT 62.522 55.000 7.64 0.00 45.43 5.92
188 189 3.490759 CGGTTGCTGTAGGCGCTG 61.491 66.667 7.64 0.00 45.43 5.18
189 190 3.804193 GGTTGCTGTAGGCGCTGC 61.804 66.667 7.64 5.16 45.43 5.25
190 191 2.743928 GTTGCTGTAGGCGCTGCT 60.744 61.111 7.64 0.00 45.43 4.24
191 192 2.743538 TTGCTGTAGGCGCTGCTG 60.744 61.111 7.64 2.50 45.43 4.41
192 193 4.765449 TGCTGTAGGCGCTGCTGG 62.765 66.667 7.64 0.00 45.43 4.85
194 195 4.845580 CTGTAGGCGCTGCTGGGG 62.846 72.222 7.64 0.23 0.00 4.96
225 226 4.508128 CAGCGGCGGACGTACCAT 62.508 66.667 9.78 0.00 46.52 3.55
226 227 3.766691 AGCGGCGGACGTACCATT 61.767 61.111 9.78 0.00 46.52 3.16
227 228 3.560278 GCGGCGGACGTACCATTG 61.560 66.667 9.78 0.00 46.52 2.82
228 229 2.182284 CGGCGGACGTACCATTGA 59.818 61.111 0.00 0.00 38.90 2.57
229 230 1.446445 CGGCGGACGTACCATTGAA 60.446 57.895 0.00 0.00 38.90 2.69
230 231 1.418342 CGGCGGACGTACCATTGAAG 61.418 60.000 0.00 0.00 38.90 3.02
231 232 0.108520 GGCGGACGTACCATTGAAGA 60.109 55.000 0.00 0.00 38.90 2.87
232 233 1.673626 GGCGGACGTACCATTGAAGAA 60.674 52.381 0.00 0.00 38.90 2.52
233 234 2.277084 GCGGACGTACCATTGAAGAAT 58.723 47.619 0.00 0.00 38.90 2.40
234 235 3.450578 GCGGACGTACCATTGAAGAATA 58.549 45.455 0.00 0.00 38.90 1.75
235 236 3.489785 GCGGACGTACCATTGAAGAATAG 59.510 47.826 0.00 0.00 38.90 1.73
236 237 3.489785 CGGACGTACCATTGAAGAATAGC 59.510 47.826 0.00 0.00 38.90 2.97
237 238 4.439057 GGACGTACCATTGAAGAATAGCA 58.561 43.478 0.00 0.00 38.79 3.49
238 239 4.270325 GGACGTACCATTGAAGAATAGCAC 59.730 45.833 0.00 0.00 38.79 4.40
239 240 4.189231 ACGTACCATTGAAGAATAGCACC 58.811 43.478 0.00 0.00 0.00 5.01
240 241 4.188462 CGTACCATTGAAGAATAGCACCA 58.812 43.478 0.00 0.00 0.00 4.17
241 242 4.634004 CGTACCATTGAAGAATAGCACCAA 59.366 41.667 0.00 0.00 0.00 3.67
242 243 5.220662 CGTACCATTGAAGAATAGCACCAAG 60.221 44.000 0.00 0.00 0.00 3.61
243 244 4.019174 ACCATTGAAGAATAGCACCAAGG 58.981 43.478 0.00 0.00 0.00 3.61
244 245 3.382546 CCATTGAAGAATAGCACCAAGGG 59.617 47.826 0.00 0.00 33.36 3.95
245 246 4.272489 CATTGAAGAATAGCACCAAGGGA 58.728 43.478 0.00 0.00 0.00 4.20
246 247 3.350219 TGAAGAATAGCACCAAGGGAC 57.650 47.619 0.00 0.00 0.00 4.46
247 248 2.280628 GAAGAATAGCACCAAGGGACG 58.719 52.381 0.00 0.00 0.00 4.79
248 249 0.541863 AGAATAGCACCAAGGGACGG 59.458 55.000 0.00 0.00 0.00 4.79
249 250 0.252197 GAATAGCACCAAGGGACGGT 59.748 55.000 0.00 0.00 37.16 4.83
254 255 2.446994 ACCAAGGGACGGTGTGGA 60.447 61.111 0.00 0.00 34.69 4.02
255 256 2.347490 CCAAGGGACGGTGTGGAG 59.653 66.667 0.00 0.00 32.54 3.86
256 257 2.214216 CCAAGGGACGGTGTGGAGA 61.214 63.158 0.00 0.00 32.54 3.71
257 258 1.293498 CAAGGGACGGTGTGGAGAG 59.707 63.158 0.00 0.00 0.00 3.20
258 259 1.152312 AAGGGACGGTGTGGAGAGT 60.152 57.895 0.00 0.00 0.00 3.24
259 260 1.472662 AAGGGACGGTGTGGAGAGTG 61.473 60.000 0.00 0.00 0.00 3.51
260 261 1.906824 GGGACGGTGTGGAGAGTGA 60.907 63.158 0.00 0.00 0.00 3.41
261 262 1.587054 GGACGGTGTGGAGAGTGAG 59.413 63.158 0.00 0.00 0.00 3.51
262 263 0.894184 GGACGGTGTGGAGAGTGAGA 60.894 60.000 0.00 0.00 0.00 3.27
263 264 0.523966 GACGGTGTGGAGAGTGAGAG 59.476 60.000 0.00 0.00 0.00 3.20
264 265 0.110678 ACGGTGTGGAGAGTGAGAGA 59.889 55.000 0.00 0.00 0.00 3.10
265 266 1.272203 ACGGTGTGGAGAGTGAGAGAT 60.272 52.381 0.00 0.00 0.00 2.75
266 267 2.026169 ACGGTGTGGAGAGTGAGAGATA 60.026 50.000 0.00 0.00 0.00 1.98
267 268 2.616376 CGGTGTGGAGAGTGAGAGATAG 59.384 54.545 0.00 0.00 0.00 2.08
268 269 3.626930 GGTGTGGAGAGTGAGAGATAGT 58.373 50.000 0.00 0.00 0.00 2.12
269 270 3.380004 GGTGTGGAGAGTGAGAGATAGTG 59.620 52.174 0.00 0.00 0.00 2.74
270 271 3.380004 GTGTGGAGAGTGAGAGATAGTGG 59.620 52.174 0.00 0.00 0.00 4.00
271 272 3.010696 TGTGGAGAGTGAGAGATAGTGGT 59.989 47.826 0.00 0.00 0.00 4.16
272 273 3.380004 GTGGAGAGTGAGAGATAGTGGTG 59.620 52.174 0.00 0.00 0.00 4.17
273 274 3.010696 TGGAGAGTGAGAGATAGTGGTGT 59.989 47.826 0.00 0.00 0.00 4.16
274 275 3.380004 GGAGAGTGAGAGATAGTGGTGTG 59.620 52.174 0.00 0.00 0.00 3.82
275 276 4.265893 GAGAGTGAGAGATAGTGGTGTGA 58.734 47.826 0.00 0.00 0.00 3.58
276 277 4.667573 AGAGTGAGAGATAGTGGTGTGAA 58.332 43.478 0.00 0.00 0.00 3.18
277 278 5.268387 AGAGTGAGAGATAGTGGTGTGAAT 58.732 41.667 0.00 0.00 0.00 2.57
278 279 5.126869 AGAGTGAGAGATAGTGGTGTGAATG 59.873 44.000 0.00 0.00 0.00 2.67
279 280 5.019470 AGTGAGAGATAGTGGTGTGAATGA 58.981 41.667 0.00 0.00 0.00 2.57
280 281 5.126869 AGTGAGAGATAGTGGTGTGAATGAG 59.873 44.000 0.00 0.00 0.00 2.90
281 282 4.403752 TGAGAGATAGTGGTGTGAATGAGG 59.596 45.833 0.00 0.00 0.00 3.86
282 283 4.614475 AGAGATAGTGGTGTGAATGAGGA 58.386 43.478 0.00 0.00 0.00 3.71
283 284 4.648762 AGAGATAGTGGTGTGAATGAGGAG 59.351 45.833 0.00 0.00 0.00 3.69
284 285 4.357325 AGATAGTGGTGTGAATGAGGAGT 58.643 43.478 0.00 0.00 0.00 3.85
285 286 2.847327 AGTGGTGTGAATGAGGAGTG 57.153 50.000 0.00 0.00 0.00 3.51
286 287 1.349026 AGTGGTGTGAATGAGGAGTGG 59.651 52.381 0.00 0.00 0.00 4.00
287 288 0.692476 TGGTGTGAATGAGGAGTGGG 59.308 55.000 0.00 0.00 0.00 4.61
288 289 0.678048 GGTGTGAATGAGGAGTGGGC 60.678 60.000 0.00 0.00 0.00 5.36
289 290 0.036732 GTGTGAATGAGGAGTGGGCA 59.963 55.000 0.00 0.00 0.00 5.36
290 291 0.325933 TGTGAATGAGGAGTGGGCAG 59.674 55.000 0.00 0.00 0.00 4.85
291 292 0.326264 GTGAATGAGGAGTGGGCAGT 59.674 55.000 0.00 0.00 0.00 4.40
292 293 0.325933 TGAATGAGGAGTGGGCAGTG 59.674 55.000 0.00 0.00 0.00 3.66
293 294 0.615331 GAATGAGGAGTGGGCAGTGA 59.385 55.000 0.00 0.00 0.00 3.41
294 295 0.326264 AATGAGGAGTGGGCAGTGAC 59.674 55.000 0.00 0.00 0.00 3.67
295 296 0.837691 ATGAGGAGTGGGCAGTGACA 60.838 55.000 0.00 0.00 0.00 3.58
296 297 1.004440 GAGGAGTGGGCAGTGACAC 60.004 63.158 0.00 4.18 37.86 3.67
297 298 2.032681 GGAGTGGGCAGTGACACC 59.967 66.667 12.93 3.87 38.34 4.16
298 299 2.818169 GGAGTGGGCAGTGACACCA 61.818 63.158 12.93 6.23 38.34 4.17
299 300 1.302033 GAGTGGGCAGTGACACCAG 60.302 63.158 12.93 0.00 38.34 4.00
300 301 1.758440 GAGTGGGCAGTGACACCAGA 61.758 60.000 12.93 0.00 38.34 3.86
301 302 1.302033 GTGGGCAGTGACACCAGAG 60.302 63.158 0.00 0.00 34.39 3.35
302 303 2.348998 GGGCAGTGACACCAGAGG 59.651 66.667 0.00 0.00 0.00 3.69
303 304 2.348998 GGCAGTGACACCAGAGGG 59.651 66.667 0.84 0.00 41.29 4.30
313 314 2.452114 CCAGAGGGTGAGGGGAGT 59.548 66.667 0.00 0.00 0.00 3.85
314 315 1.229658 CCAGAGGGTGAGGGGAGTT 60.230 63.158 0.00 0.00 0.00 3.01
315 316 0.042731 CCAGAGGGTGAGGGGAGTTA 59.957 60.000 0.00 0.00 0.00 2.24
316 317 1.344496 CCAGAGGGTGAGGGGAGTTAT 60.344 57.143 0.00 0.00 0.00 1.89
317 318 1.765314 CAGAGGGTGAGGGGAGTTATG 59.235 57.143 0.00 0.00 0.00 1.90
318 319 1.651770 AGAGGGTGAGGGGAGTTATGA 59.348 52.381 0.00 0.00 0.00 2.15
319 320 2.043227 GAGGGTGAGGGGAGTTATGAG 58.957 57.143 0.00 0.00 0.00 2.90
320 321 1.651770 AGGGTGAGGGGAGTTATGAGA 59.348 52.381 0.00 0.00 0.00 3.27
321 322 1.763545 GGGTGAGGGGAGTTATGAGAC 59.236 57.143 0.00 0.00 0.00 3.36
322 323 2.467880 GGTGAGGGGAGTTATGAGACA 58.532 52.381 0.00 0.00 0.00 3.41
323 324 3.041946 GGTGAGGGGAGTTATGAGACAT 58.958 50.000 0.00 0.00 0.00 3.06
324 325 3.070302 GGTGAGGGGAGTTATGAGACATC 59.930 52.174 0.00 0.00 0.00 3.06
325 326 3.070302 GTGAGGGGAGTTATGAGACATCC 59.930 52.174 0.00 0.00 0.00 3.51
326 327 3.051803 TGAGGGGAGTTATGAGACATCCT 60.052 47.826 0.00 0.00 0.00 3.24
327 328 4.170053 TGAGGGGAGTTATGAGACATCCTA 59.830 45.833 0.00 0.00 0.00 2.94
328 329 5.162826 TGAGGGGAGTTATGAGACATCCTAT 60.163 44.000 0.00 0.00 0.00 2.57
329 330 5.337788 AGGGGAGTTATGAGACATCCTATC 58.662 45.833 0.00 0.00 0.00 2.08
330 331 4.468153 GGGGAGTTATGAGACATCCTATCC 59.532 50.000 0.00 0.00 0.00 2.59
331 332 4.158764 GGGAGTTATGAGACATCCTATCCG 59.841 50.000 0.00 0.00 0.00 4.18
332 333 4.767928 GGAGTTATGAGACATCCTATCCGT 59.232 45.833 0.00 0.00 0.00 4.69
333 334 5.106078 GGAGTTATGAGACATCCTATCCGTC 60.106 48.000 0.00 0.00 0.00 4.79
334 335 5.636123 AGTTATGAGACATCCTATCCGTCT 58.364 41.667 0.00 0.00 42.58 4.18
337 338 2.164338 GAGACATCCTATCCGTCTCCC 58.836 57.143 7.40 0.00 46.48 4.30
338 339 1.499438 AGACATCCTATCCGTCTCCCA 59.501 52.381 0.00 0.00 35.02 4.37
339 340 1.614413 GACATCCTATCCGTCTCCCAC 59.386 57.143 0.00 0.00 0.00 4.61
347 348 2.431942 CGTCTCCCACGTTTCCCG 60.432 66.667 0.00 0.00 44.07 5.14
348 349 2.922950 CGTCTCCCACGTTTCCCGA 61.923 63.158 0.00 0.00 44.07 5.14
349 350 1.080025 GTCTCCCACGTTTCCCGAG 60.080 63.158 0.00 0.00 40.70 4.63
350 351 2.264794 CTCCCACGTTTCCCGAGG 59.735 66.667 0.00 0.00 45.66 4.63
351 352 3.952628 CTCCCACGTTTCCCGAGGC 62.953 68.421 0.00 0.00 44.85 4.70
352 353 4.323477 CCCACGTTTCCCGAGGCA 62.323 66.667 0.00 0.00 44.85 4.75
353 354 2.046314 CCACGTTTCCCGAGGCAT 60.046 61.111 0.00 0.00 40.43 4.40
354 355 2.398554 CCACGTTTCCCGAGGCATG 61.399 63.158 0.00 0.00 40.43 4.06
355 356 2.746277 ACGTTTCCCGAGGCATGC 60.746 61.111 9.90 9.90 40.70 4.06
356 357 2.745884 CGTTTCCCGAGGCATGCA 60.746 61.111 21.36 0.00 39.56 3.96
357 358 2.753966 CGTTTCCCGAGGCATGCAG 61.754 63.158 21.36 10.01 39.56 4.41
358 359 2.751436 TTTCCCGAGGCATGCAGC 60.751 61.111 21.36 9.54 44.65 5.25
368 369 3.818787 CATGCAGCGAAGGGGCAC 61.819 66.667 0.00 0.00 40.83 5.01
383 384 3.334751 CACGCGTGGCTCGACAAA 61.335 61.111 31.15 0.00 42.86 2.83
384 385 2.586635 ACGCGTGGCTCGACAAAA 60.587 55.556 12.93 0.00 42.86 2.44
385 386 2.174969 ACGCGTGGCTCGACAAAAA 61.175 52.632 12.93 0.00 42.86 1.94
386 387 1.721133 CGCGTGGCTCGACAAAAAC 60.721 57.895 13.77 0.00 42.86 2.43
387 388 1.647084 GCGTGGCTCGACAAAAACT 59.353 52.632 13.77 0.00 42.86 2.66
388 389 0.657368 GCGTGGCTCGACAAAAACTG 60.657 55.000 13.77 0.00 42.86 3.16
389 390 0.657368 CGTGGCTCGACAAAAACTGC 60.657 55.000 2.21 0.00 42.86 4.40
390 391 0.317854 GTGGCTCGACAAAAACTGCC 60.318 55.000 1.35 1.35 40.62 4.85
391 392 1.082104 GGCTCGACAAAAACTGCCG 60.082 57.895 0.00 0.00 31.20 5.69
392 393 1.503818 GGCTCGACAAAAACTGCCGA 61.504 55.000 0.00 0.00 37.61 5.54
393 394 0.517316 GCTCGACAAAAACTGCCGAT 59.483 50.000 0.00 0.00 39.34 4.18
394 395 1.069227 GCTCGACAAAAACTGCCGATT 60.069 47.619 0.00 0.00 39.34 3.34
395 396 2.839474 CTCGACAAAAACTGCCGATTC 58.161 47.619 0.00 0.00 39.34 2.52
396 397 1.193650 TCGACAAAAACTGCCGATTCG 59.806 47.619 0.00 0.00 34.74 3.34
406 407 2.789249 CCGATTCGGCCGTTTTCC 59.211 61.111 27.15 10.12 41.17 3.13
407 408 1.743995 CCGATTCGGCCGTTTTCCT 60.744 57.895 27.15 4.25 41.17 3.36
408 409 1.423845 CGATTCGGCCGTTTTCCTG 59.576 57.895 27.15 6.06 0.00 3.86
409 410 1.136774 GATTCGGCCGTTTTCCTGC 59.863 57.895 27.15 3.46 0.00 4.85
410 411 2.577763 GATTCGGCCGTTTTCCTGCG 62.578 60.000 27.15 0.00 0.00 5.18
411 412 3.811118 TTCGGCCGTTTTCCTGCGA 62.811 57.895 27.15 0.00 0.00 5.10
412 413 3.350612 CGGCCGTTTTCCTGCGAA 61.351 61.111 19.50 0.00 0.00 4.70
413 414 2.686816 CGGCCGTTTTCCTGCGAAT 61.687 57.895 19.50 0.00 0.00 3.34
414 415 1.363145 CGGCCGTTTTCCTGCGAATA 61.363 55.000 19.50 0.00 0.00 1.75
415 416 0.377203 GGCCGTTTTCCTGCGAATAG 59.623 55.000 0.00 0.00 0.00 1.73
416 417 0.377203 GCCGTTTTCCTGCGAATAGG 59.623 55.000 0.00 0.00 39.29 2.57
417 418 0.377203 CCGTTTTCCTGCGAATAGGC 59.623 55.000 0.00 0.00 37.76 3.93
418 419 0.377203 CGTTTTCCTGCGAATAGGCC 59.623 55.000 0.00 0.00 37.76 5.19
419 420 0.738975 GTTTTCCTGCGAATAGGCCC 59.261 55.000 0.00 0.00 37.76 5.80
420 421 0.329931 TTTTCCTGCGAATAGGCCCA 59.670 50.000 0.00 0.00 37.76 5.36
421 422 0.107214 TTTCCTGCGAATAGGCCCAG 60.107 55.000 0.00 0.00 37.76 4.45
422 423 0.980754 TTCCTGCGAATAGGCCCAGA 60.981 55.000 0.00 0.00 37.76 3.86
423 424 0.980754 TCCTGCGAATAGGCCCAGAA 60.981 55.000 0.00 0.00 37.76 3.02
424 425 0.107214 CCTGCGAATAGGCCCAGAAA 60.107 55.000 0.00 0.00 0.00 2.52
425 426 1.477558 CCTGCGAATAGGCCCAGAAAT 60.478 52.381 0.00 0.00 0.00 2.17
426 427 1.605710 CTGCGAATAGGCCCAGAAATG 59.394 52.381 0.00 0.00 0.00 2.32
427 428 0.312102 GCGAATAGGCCCAGAAATGC 59.688 55.000 0.00 0.00 0.00 3.56
428 429 1.972872 CGAATAGGCCCAGAAATGCT 58.027 50.000 0.00 0.00 0.00 3.79
429 430 2.301346 CGAATAGGCCCAGAAATGCTT 58.699 47.619 0.00 0.00 0.00 3.91
430 431 2.689983 CGAATAGGCCCAGAAATGCTTT 59.310 45.455 0.00 0.00 0.00 3.51
431 432 3.882888 CGAATAGGCCCAGAAATGCTTTA 59.117 43.478 0.00 0.00 0.00 1.85
432 433 4.338118 CGAATAGGCCCAGAAATGCTTTAA 59.662 41.667 0.00 0.00 0.00 1.52
433 434 5.506317 CGAATAGGCCCAGAAATGCTTTAAG 60.506 44.000 0.00 0.00 0.00 1.85
434 435 3.175438 AGGCCCAGAAATGCTTTAAGT 57.825 42.857 0.00 0.00 0.00 2.24
435 436 3.510459 AGGCCCAGAAATGCTTTAAGTT 58.490 40.909 0.00 0.00 0.00 2.66
436 437 3.511540 AGGCCCAGAAATGCTTTAAGTTC 59.488 43.478 0.00 0.00 0.00 3.01
437 438 3.368427 GGCCCAGAAATGCTTTAAGTTCC 60.368 47.826 0.00 0.00 0.00 3.62
438 439 3.673323 GCCCAGAAATGCTTTAAGTTCCG 60.673 47.826 0.00 0.00 0.00 4.30
439 440 3.506067 CCCAGAAATGCTTTAAGTTCCGT 59.494 43.478 0.00 0.00 0.00 4.69
440 441 4.475944 CCAGAAATGCTTTAAGTTCCGTG 58.524 43.478 0.00 0.00 0.00 4.94
441 442 3.914364 CAGAAATGCTTTAAGTTCCGTGC 59.086 43.478 0.00 0.00 0.00 5.34
442 443 2.611974 AATGCTTTAAGTTCCGTGCG 57.388 45.000 0.00 0.00 0.00 5.34
443 444 0.802494 ATGCTTTAAGTTCCGTGCGG 59.198 50.000 3.94 3.94 0.00 5.69
444 445 1.154282 GCTTTAAGTTCCGTGCGGC 60.154 57.895 5.64 0.00 34.68 6.53
445 446 1.500396 CTTTAAGTTCCGTGCGGCC 59.500 57.895 5.64 0.00 34.68 6.13
446 447 0.953960 CTTTAAGTTCCGTGCGGCCT 60.954 55.000 5.64 1.47 34.68 5.19
447 448 1.231958 TTTAAGTTCCGTGCGGCCTG 61.232 55.000 5.64 0.00 34.68 4.85
448 449 2.102109 TTAAGTTCCGTGCGGCCTGA 62.102 55.000 5.64 0.00 34.68 3.86
449 450 2.501223 TAAGTTCCGTGCGGCCTGAG 62.501 60.000 5.64 0.00 34.68 3.35
450 451 4.373116 GTTCCGTGCGGCCTGAGA 62.373 66.667 5.64 0.00 34.68 3.27
451 452 3.621805 TTCCGTGCGGCCTGAGAA 61.622 61.111 5.64 0.00 34.68 2.87
452 453 3.589654 TTCCGTGCGGCCTGAGAAG 62.590 63.158 5.64 0.00 34.68 2.85
453 454 4.379243 CCGTGCGGCCTGAGAAGT 62.379 66.667 0.00 0.00 0.00 3.01
454 455 3.114616 CGTGCGGCCTGAGAAGTG 61.115 66.667 0.00 0.00 0.00 3.16
455 456 2.743928 GTGCGGCCTGAGAAGTGG 60.744 66.667 0.00 0.00 0.00 4.00
456 457 2.922503 TGCGGCCTGAGAAGTGGA 60.923 61.111 0.00 0.00 0.00 4.02
457 458 2.293318 TGCGGCCTGAGAAGTGGAT 61.293 57.895 0.00 0.00 0.00 3.41
458 459 1.817099 GCGGCCTGAGAAGTGGATG 60.817 63.158 0.00 0.00 0.00 3.51
459 460 1.817099 CGGCCTGAGAAGTGGATGC 60.817 63.158 0.00 0.00 0.00 3.91
460 461 1.300963 GGCCTGAGAAGTGGATGCA 59.699 57.895 0.00 0.00 0.00 3.96
461 462 0.322816 GGCCTGAGAAGTGGATGCAA 60.323 55.000 0.00 0.00 0.00 4.08
462 463 1.093159 GCCTGAGAAGTGGATGCAAG 58.907 55.000 0.00 0.00 0.00 4.01
463 464 1.612726 GCCTGAGAAGTGGATGCAAGT 60.613 52.381 0.00 0.00 0.00 3.16
464 465 2.354259 CCTGAGAAGTGGATGCAAGTC 58.646 52.381 0.00 0.00 0.00 3.01
465 466 2.289882 CCTGAGAAGTGGATGCAAGTCA 60.290 50.000 0.00 0.00 0.00 3.41
466 467 2.740981 CTGAGAAGTGGATGCAAGTCAC 59.259 50.000 8.73 8.73 0.00 3.67
467 468 1.728971 GAGAAGTGGATGCAAGTCACG 59.271 52.381 0.00 0.00 36.60 4.35
468 469 0.166814 GAAGTGGATGCAAGTCACGC 59.833 55.000 0.00 0.00 36.60 5.34
469 470 0.534877 AAGTGGATGCAAGTCACGCA 60.535 50.000 0.00 0.00 44.94 5.24
470 471 0.534877 AGTGGATGCAAGTCACGCAA 60.535 50.000 0.00 0.00 43.84 4.85
471 472 0.385974 GTGGATGCAAGTCACGCAAC 60.386 55.000 0.00 0.00 43.84 4.17
472 473 1.210155 GGATGCAAGTCACGCAACC 59.790 57.895 0.00 0.00 43.83 3.77
473 474 1.948508 GATGCAAGTCACGCAACCA 59.051 52.632 0.00 0.00 43.84 3.67
474 475 0.310543 GATGCAAGTCACGCAACCAA 59.689 50.000 0.00 0.00 43.84 3.67
475 476 0.743688 ATGCAAGTCACGCAACCAAA 59.256 45.000 0.00 0.00 43.84 3.28
476 477 0.179150 TGCAAGTCACGCAACCAAAC 60.179 50.000 0.00 0.00 36.17 2.93
477 478 0.179150 GCAAGTCACGCAACCAAACA 60.179 50.000 0.00 0.00 0.00 2.83
478 479 1.535860 GCAAGTCACGCAACCAAACAT 60.536 47.619 0.00 0.00 0.00 2.71
479 480 2.287308 GCAAGTCACGCAACCAAACATA 60.287 45.455 0.00 0.00 0.00 2.29
480 481 3.296628 CAAGTCACGCAACCAAACATAC 58.703 45.455 0.00 0.00 0.00 2.39
481 482 1.877443 AGTCACGCAACCAAACATACC 59.123 47.619 0.00 0.00 0.00 2.73
482 483 1.604755 GTCACGCAACCAAACATACCA 59.395 47.619 0.00 0.00 0.00 3.25
483 484 2.227865 GTCACGCAACCAAACATACCAT 59.772 45.455 0.00 0.00 0.00 3.55
484 485 2.887783 TCACGCAACCAAACATACCATT 59.112 40.909 0.00 0.00 0.00 3.16
485 486 3.319405 TCACGCAACCAAACATACCATTT 59.681 39.130 0.00 0.00 0.00 2.32
486 487 4.054671 CACGCAACCAAACATACCATTTT 58.945 39.130 0.00 0.00 0.00 1.82
487 488 4.509600 CACGCAACCAAACATACCATTTTT 59.490 37.500 0.00 0.00 0.00 1.94
488 489 5.692204 CACGCAACCAAACATACCATTTTTA 59.308 36.000 0.00 0.00 0.00 1.52
489 490 6.367422 CACGCAACCAAACATACCATTTTTAT 59.633 34.615 0.00 0.00 0.00 1.40
490 491 6.931840 ACGCAACCAAACATACCATTTTTATT 59.068 30.769 0.00 0.00 0.00 1.40
491 492 7.117092 ACGCAACCAAACATACCATTTTTATTC 59.883 33.333 0.00 0.00 0.00 1.75
492 493 7.412455 CGCAACCAAACATACCATTTTTATTCC 60.412 37.037 0.00 0.00 0.00 3.01
493 494 7.412455 GCAACCAAACATACCATTTTTATTCCG 60.412 37.037 0.00 0.00 0.00 4.30
494 495 6.103330 ACCAAACATACCATTTTTATTCCGC 58.897 36.000 0.00 0.00 0.00 5.54
495 496 6.102663 CCAAACATACCATTTTTATTCCGCA 58.897 36.000 0.00 0.00 0.00 5.69
496 497 6.035542 CCAAACATACCATTTTTATTCCGCAC 59.964 38.462 0.00 0.00 0.00 5.34
497 498 4.915704 ACATACCATTTTTATTCCGCACG 58.084 39.130 0.00 0.00 0.00 5.34
498 499 4.396790 ACATACCATTTTTATTCCGCACGT 59.603 37.500 0.00 0.00 0.00 4.49
499 500 3.210358 ACCATTTTTATTCCGCACGTG 57.790 42.857 12.28 12.28 0.00 4.49
500 501 2.554893 ACCATTTTTATTCCGCACGTGT 59.445 40.909 18.38 0.00 0.00 4.49
501 502 3.168193 CCATTTTTATTCCGCACGTGTC 58.832 45.455 18.38 8.63 0.00 3.67
502 503 3.119990 CCATTTTTATTCCGCACGTGTCT 60.120 43.478 18.38 0.26 0.00 3.41
503 504 3.529634 TTTTTATTCCGCACGTGTCTG 57.470 42.857 18.38 7.49 0.00 3.51
504 505 1.434555 TTTATTCCGCACGTGTCTGG 58.565 50.000 18.38 16.34 0.00 3.86
505 506 0.319083 TTATTCCGCACGTGTCTGGT 59.681 50.000 18.38 3.87 0.00 4.00
506 507 0.319083 TATTCCGCACGTGTCTGGTT 59.681 50.000 18.38 11.01 0.00 3.67
507 508 1.227999 ATTCCGCACGTGTCTGGTTG 61.228 55.000 18.38 0.00 0.00 3.77
508 509 3.345808 CCGCACGTGTCTGGTTGG 61.346 66.667 18.38 4.35 0.00 3.77
509 510 2.279851 CGCACGTGTCTGGTTGGA 60.280 61.111 18.38 0.00 0.00 3.53
510 511 1.667830 CGCACGTGTCTGGTTGGAT 60.668 57.895 18.38 0.00 0.00 3.41
511 512 1.626654 CGCACGTGTCTGGTTGGATC 61.627 60.000 18.38 0.00 0.00 3.36
512 513 0.320771 GCACGTGTCTGGTTGGATCT 60.321 55.000 18.38 0.00 0.00 2.75
513 514 1.067142 GCACGTGTCTGGTTGGATCTA 60.067 52.381 18.38 0.00 0.00 1.98
514 515 2.881074 CACGTGTCTGGTTGGATCTAG 58.119 52.381 7.58 0.00 0.00 2.43
515 516 1.204941 ACGTGTCTGGTTGGATCTAGC 59.795 52.381 0.00 0.00 0.00 3.42
516 517 1.799181 CGTGTCTGGTTGGATCTAGCG 60.799 57.143 0.00 0.00 0.00 4.26
517 518 0.175760 TGTCTGGTTGGATCTAGCGC 59.824 55.000 0.00 0.00 0.00 5.92
518 519 0.872021 GTCTGGTTGGATCTAGCGCG 60.872 60.000 0.00 0.00 0.00 6.86
519 520 1.592669 CTGGTTGGATCTAGCGCGG 60.593 63.158 8.83 0.00 0.00 6.46
520 521 2.280186 GGTTGGATCTAGCGCGGG 60.280 66.667 8.83 0.00 0.00 6.13
521 522 2.967615 GTTGGATCTAGCGCGGGC 60.968 66.667 17.92 17.92 40.37 6.13
522 523 3.466314 TTGGATCTAGCGCGGGCA 61.466 61.111 27.20 11.49 43.41 5.36
523 524 3.025189 TTGGATCTAGCGCGGGCAA 62.025 57.895 27.20 11.81 43.41 4.52
524 525 2.967615 GGATCTAGCGCGGGCAAC 60.968 66.667 27.20 11.74 43.41 4.17
536 537 2.978010 GGCAACCAGACACACCCG 60.978 66.667 0.00 0.00 0.00 5.28
537 538 2.203153 GCAACCAGACACACCCGT 60.203 61.111 0.00 0.00 0.00 5.28
538 539 1.822186 GCAACCAGACACACCCGTT 60.822 57.895 0.00 0.00 0.00 4.44
539 540 2.021722 CAACCAGACACACCCGTTG 58.978 57.895 0.00 0.00 0.00 4.10
540 541 0.746563 CAACCAGACACACCCGTTGT 60.747 55.000 0.00 0.00 39.97 3.32
556 557 2.284912 CGTTGTGTTTTACGTACGTGCA 60.285 45.455 30.25 19.17 36.09 4.57
557 558 3.602038 CGTTGTGTTTTACGTACGTGCAT 60.602 43.478 30.25 6.24 36.09 3.96
563 564 1.072116 TTACGTACGTGCATGGCGAC 61.072 55.000 30.25 13.01 0.00 5.19
565 566 2.433491 GTACGTGCATGGCGACCA 60.433 61.111 11.36 1.01 38.19 4.02
655 656 3.944055 TGACTCTAGTCCAAAGCAGAC 57.056 47.619 7.63 0.00 44.15 3.51
702 703 1.170919 CGGATCCGACCCTACGTGAT 61.171 60.000 30.62 0.00 42.83 3.06
740 741 1.352156 GCGACGGACACACAGAATCC 61.352 60.000 0.00 0.00 0.00 3.01
860 882 2.432628 CACCGCTCCTCCGTCAAC 60.433 66.667 0.00 0.00 0.00 3.18
888 910 3.148279 CTCTAGAACGCCCGGCCT 61.148 66.667 3.10 0.00 0.00 5.19
904 957 2.729028 GCCTGTATAAAAGGAGGCCA 57.271 50.000 5.01 0.00 44.54 5.36
970 1034 2.277057 TCGAGATACGCACGCACG 60.277 61.111 0.00 0.00 42.26 5.34
972 1036 2.878991 GAGATACGCACGCACGCA 60.879 61.111 0.00 0.00 36.19 5.24
973 1037 3.126722 GAGATACGCACGCACGCAC 62.127 63.158 0.00 0.00 36.19 5.34
974 1038 3.179265 GATACGCACGCACGCACT 61.179 61.111 0.00 0.00 36.19 4.40
975 1039 3.126722 GATACGCACGCACGCACTC 62.127 63.158 0.00 0.00 36.19 3.51
976 1040 3.626680 ATACGCACGCACGCACTCT 62.627 57.895 0.00 0.00 36.19 3.24
1030 1097 1.226262 GCGTCTCTCCTCCTCCTCT 59.774 63.158 0.00 0.00 0.00 3.69
1034 1104 1.064979 GTCTCTCCTCCTCCTCTTCGT 60.065 57.143 0.00 0.00 0.00 3.85
1035 1105 1.210967 TCTCTCCTCCTCCTCTTCGTC 59.789 57.143 0.00 0.00 0.00 4.20
1036 1106 0.107606 TCTCCTCCTCCTCTTCGTCG 60.108 60.000 0.00 0.00 0.00 5.12
1037 1107 0.393267 CTCCTCCTCCTCTTCGTCGT 60.393 60.000 0.00 0.00 0.00 4.34
1038 1108 0.392729 TCCTCCTCCTCTTCGTCGTC 60.393 60.000 0.00 0.00 0.00 4.20
1039 1109 1.707239 CCTCCTCCTCTTCGTCGTCG 61.707 65.000 0.00 0.00 38.55 5.12
1040 1110 2.100603 CCTCCTCTTCGTCGTCGC 59.899 66.667 0.00 0.00 36.96 5.19
1041 1111 2.100603 CTCCTCTTCGTCGTCGCC 59.899 66.667 0.00 0.00 36.96 5.54
1242 1318 2.833582 TCCGACGGCCTCCTCATC 60.834 66.667 9.66 0.00 0.00 2.92
1286 1380 5.822519 ACAACAATGTTTCTCAAGCTCTGTA 59.177 36.000 0.00 0.00 35.91 2.74
1317 1430 1.887198 AGAGTGAACAGGAGTGGTACG 59.113 52.381 0.00 0.00 0.00 3.67
1586 1715 0.319641 GTCCACCTTCGACACTGACC 60.320 60.000 0.00 0.00 0.00 4.02
1624 1763 5.607119 TTTCCTTCAATCTTGTTACTCGC 57.393 39.130 0.00 0.00 0.00 5.03
1625 1764 4.265904 TCCTTCAATCTTGTTACTCGCA 57.734 40.909 0.00 0.00 0.00 5.10
1626 1765 4.245660 TCCTTCAATCTTGTTACTCGCAG 58.754 43.478 0.00 0.00 0.00 5.18
1627 1766 3.997021 CCTTCAATCTTGTTACTCGCAGT 59.003 43.478 0.00 0.00 0.00 4.40
1628 1767 5.047590 TCCTTCAATCTTGTTACTCGCAGTA 60.048 40.000 0.00 0.00 0.00 2.74
1629 1768 5.062308 CCTTCAATCTTGTTACTCGCAGTAC 59.938 44.000 0.00 0.00 28.93 2.73
1630 1769 5.386958 TCAATCTTGTTACTCGCAGTACT 57.613 39.130 0.00 0.00 28.93 2.73
1631 1770 5.779922 TCAATCTTGTTACTCGCAGTACTT 58.220 37.500 0.00 0.00 28.93 2.24
1632 1771 6.220930 TCAATCTTGTTACTCGCAGTACTTT 58.779 36.000 0.00 0.00 28.93 2.66
1633 1772 6.704493 TCAATCTTGTTACTCGCAGTACTTTT 59.296 34.615 0.00 0.00 28.93 2.27
1787 1950 1.347320 CCTTCTACGCGAACAAGTCC 58.653 55.000 15.93 0.00 0.00 3.85
1824 1987 1.843368 AATGATCCCAGCTGTGGTTG 58.157 50.000 13.81 0.00 43.23 3.77
1862 2037 3.255642 CCACCAAGGTACCATCAAAACAG 59.744 47.826 15.94 0.00 0.00 3.16
1956 2145 3.364441 GTGCTTGACATGGGCGCA 61.364 61.111 10.83 5.70 36.61 6.09
2016 2205 3.449227 CCGAGCTACCTCACCGCA 61.449 66.667 0.00 0.00 38.00 5.69
2024 2213 1.920734 TACCTCACCGCAATGGCCAT 61.921 55.000 14.09 14.09 43.94 4.40
2139 2328 2.838225 CTCCGGGCGTCATACCCT 60.838 66.667 0.00 0.00 46.04 4.34
2151 2340 2.742116 ATACCCTGACGCGGCCATT 61.742 57.895 10.82 0.00 0.00 3.16
2429 2694 1.804372 GCCACAGATACTCAGCTTCCG 60.804 57.143 0.00 0.00 0.00 4.30
2450 2718 2.439507 GGGAGAAGAATGGGCAGACATA 59.560 50.000 0.00 0.00 0.00 2.29
2695 3147 6.680874 TTTTACGTGTTGATTTGGTACACT 57.319 33.333 0.00 0.00 39.29 3.55
2946 3864 6.540995 ACAGCCTTGATTTGATCTATGCTAT 58.459 36.000 0.00 0.00 34.90 2.97
2947 3865 7.002879 ACAGCCTTGATTTGATCTATGCTATT 58.997 34.615 0.00 0.00 34.90 1.73
3002 3920 4.100653 TCAGAATTCTGGCGAATGATCTCT 59.899 41.667 30.33 3.06 43.91 3.10
3133 4051 5.500234 TCTTACCATGAGAAGACCAAATGG 58.500 41.667 0.00 0.00 42.88 3.16
3157 4075 5.697633 GCAGATCTCAGAGGAAGAAATGATC 59.302 44.000 0.00 0.00 0.00 2.92
3173 4104 7.778083 AGAAATGATCAAATGCAGCAATAAGA 58.222 30.769 0.00 0.00 0.00 2.10
3175 4106 8.420374 AAATGATCAAATGCAGCAATAAGAAG 57.580 30.769 0.00 0.00 0.00 2.85
3176 4107 6.519679 TGATCAAATGCAGCAATAAGAAGT 57.480 33.333 0.00 0.00 0.00 3.01
3181 4117 8.109705 TCAAATGCAGCAATAAGAAGTAGAAA 57.890 30.769 0.00 0.00 0.00 2.52
3207 4143 1.474330 ATCAAATTGGAGTTCGGGCC 58.526 50.000 0.00 0.00 0.00 5.80
3208 4144 0.111446 TCAAATTGGAGTTCGGGCCA 59.889 50.000 4.39 0.00 0.00 5.36
3251 4187 3.429492 TCAGATAACAGCAATTTGCCCA 58.571 40.909 17.51 1.40 46.52 5.36
3260 4196 2.775384 AGCAATTTGCCCATGAATCCAT 59.225 40.909 17.51 0.00 46.52 3.41
3281 4217 0.593128 CGGCAGAAACCAACAGAAGG 59.407 55.000 0.00 0.00 0.00 3.46
3285 4221 3.253432 GGCAGAAACCAACAGAAGGTAAG 59.747 47.826 0.00 0.00 38.76 2.34
3288 4224 4.520492 CAGAAACCAACAGAAGGTAAGCAT 59.480 41.667 0.00 0.00 38.76 3.79
3291 4227 4.853924 ACCAACAGAAGGTAAGCATTTG 57.146 40.909 0.00 0.00 37.67 2.32
3292 4228 4.469657 ACCAACAGAAGGTAAGCATTTGA 58.530 39.130 0.00 0.00 37.67 2.69
3294 4230 5.539955 ACCAACAGAAGGTAAGCATTTGATT 59.460 36.000 0.00 0.00 37.67 2.57
3297 4233 5.574188 ACAGAAGGTAAGCATTTGATTCCT 58.426 37.500 0.00 0.00 0.00 3.36
3299 4235 4.400567 AGAAGGTAAGCATTTGATTCCTGC 59.599 41.667 0.00 0.00 36.15 4.85
3312 4248 3.181451 TGATTCCTGCACAGAAACTGACT 60.181 43.478 5.76 0.00 35.18 3.41
3315 4251 1.002033 CCTGCACAGAAACTGACTTGC 60.002 52.381 5.76 5.95 35.18 4.01
3320 4256 3.111098 CACAGAAACTGACTTGCTTTGC 58.889 45.455 5.76 0.00 35.18 3.68
3321 4257 2.754552 ACAGAAACTGACTTGCTTTGCA 59.245 40.909 5.76 0.00 35.18 4.08
3333 4271 3.287312 TGCTTTGCATGCACTCTAAAC 57.713 42.857 22.58 8.09 35.31 2.01
3338 4276 5.450592 TTTGCATGCACTCTAAACATCAA 57.549 34.783 22.58 4.23 0.00 2.57
3360 4298 9.911788 ATCAAAATACTTTACTCTGATCACCAT 57.088 29.630 0.00 0.00 0.00 3.55
3374 4312 7.674120 TCTGATCACCATTCCAGTATCATAAG 58.326 38.462 0.00 0.00 0.00 1.73
3435 4374 6.180472 AGTATTGTTCCAACTAGTCCATTGG 58.820 40.000 5.12 5.12 45.78 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.038080 CTTGGGTTCGGTTGCGCC 62.038 66.667 4.18 0.00 0.00 6.53
1 2 2.975799 TCTTGGGTTCGGTTGCGC 60.976 61.111 0.00 0.00 0.00 6.09
2 3 0.320073 TAGTCTTGGGTTCGGTTGCG 60.320 55.000 0.00 0.00 0.00 4.85
5 6 1.346722 CTGGTAGTCTTGGGTTCGGTT 59.653 52.381 0.00 0.00 0.00 4.44
6 7 0.974383 CTGGTAGTCTTGGGTTCGGT 59.026 55.000 0.00 0.00 0.00 4.69
7 8 0.249398 CCTGGTAGTCTTGGGTTCGG 59.751 60.000 0.00 0.00 0.00 4.30
8 9 0.974383 ACCTGGTAGTCTTGGGTTCG 59.026 55.000 0.00 0.00 0.00 3.95
9 10 2.028020 CAGACCTGGTAGTCTTGGGTTC 60.028 54.545 0.00 0.00 44.83 3.62
10 11 1.978580 CAGACCTGGTAGTCTTGGGTT 59.021 52.381 0.00 0.00 44.83 4.11
11 12 1.645710 CAGACCTGGTAGTCTTGGGT 58.354 55.000 0.00 0.00 44.83 4.51
12 13 0.905357 CCAGACCTGGTAGTCTTGGG 59.095 60.000 0.00 0.00 44.83 4.12
23 24 2.702478 TCTGCCTTCATATCCAGACCTG 59.298 50.000 0.00 0.00 30.00 4.00
24 25 2.971330 CTCTGCCTTCATATCCAGACCT 59.029 50.000 0.00 0.00 31.60 3.85
25 26 2.549778 GCTCTGCCTTCATATCCAGACC 60.550 54.545 0.00 0.00 31.60 3.85
26 27 2.549778 GGCTCTGCCTTCATATCCAGAC 60.550 54.545 0.73 0.00 46.69 3.51
27 28 1.696336 GGCTCTGCCTTCATATCCAGA 59.304 52.381 0.73 0.00 46.69 3.86
28 29 2.181954 GGCTCTGCCTTCATATCCAG 57.818 55.000 0.73 0.00 46.69 3.86
58 59 4.776322 CTCGGGCCAATGCGGTGA 62.776 66.667 4.39 0.00 38.85 4.02
63 64 3.764160 CTCCTCCTCGGGCCAATGC 62.764 68.421 4.39 0.00 0.00 3.56
64 65 2.507944 CTCCTCCTCGGGCCAATG 59.492 66.667 4.39 0.00 0.00 2.82
65 66 2.770048 CCTCCTCCTCGGGCCAAT 60.770 66.667 4.39 0.00 0.00 3.16
71 72 4.787280 ACCAGGCCTCCTCCTCGG 62.787 72.222 0.00 0.72 33.25 4.63
72 73 3.465403 CACCAGGCCTCCTCCTCG 61.465 72.222 0.00 0.00 33.25 4.63
73 74 3.791586 GCACCAGGCCTCCTCCTC 61.792 72.222 0.00 0.00 33.25 3.71
74 75 4.664267 TGCACCAGGCCTCCTCCT 62.664 66.667 0.00 0.00 43.89 3.69
75 76 4.106925 CTGCACCAGGCCTCCTCC 62.107 72.222 0.00 0.00 43.89 4.30
76 77 2.533974 CTTCTGCACCAGGCCTCCTC 62.534 65.000 0.00 0.00 43.89 3.71
77 78 2.530151 TTCTGCACCAGGCCTCCT 60.530 61.111 0.00 0.00 43.89 3.69
78 79 2.045536 CTTCTGCACCAGGCCTCC 60.046 66.667 0.00 0.00 43.89 4.30
79 80 2.045536 CCTTCTGCACCAGGCCTC 60.046 66.667 0.00 0.00 43.89 4.70
80 81 3.655211 CCCTTCTGCACCAGGCCT 61.655 66.667 0.00 0.00 43.89 5.19
81 82 4.748144 CCCCTTCTGCACCAGGCC 62.748 72.222 0.00 0.00 43.89 5.19
82 83 4.748144 CCCCCTTCTGCACCAGGC 62.748 72.222 1.26 0.00 45.13 4.85
83 84 2.935481 TCCCCCTTCTGCACCAGG 60.935 66.667 0.00 0.00 31.51 4.45
84 85 2.352805 GTCCCCCTTCTGCACCAG 59.647 66.667 0.00 0.00 0.00 4.00
85 86 3.636231 CGTCCCCCTTCTGCACCA 61.636 66.667 0.00 0.00 0.00 4.17
86 87 3.319198 TCGTCCCCCTTCTGCACC 61.319 66.667 0.00 0.00 0.00 5.01
87 88 2.047179 GTCGTCCCCCTTCTGCAC 60.047 66.667 0.00 0.00 0.00 4.57
88 89 3.691342 CGTCGTCCCCCTTCTGCA 61.691 66.667 0.00 0.00 0.00 4.41
90 91 4.796231 CGCGTCGTCCCCCTTCTG 62.796 72.222 0.00 0.00 0.00 3.02
112 113 4.776322 TTGACCTGATGGCGGCCG 62.776 66.667 24.05 24.05 36.63 6.13
113 114 2.124151 ATTGACCTGATGGCGGCC 60.124 61.111 13.32 13.32 36.63 6.13
114 115 3.113745 CATTGACCTGATGGCGGC 58.886 61.111 0.00 0.00 36.63 6.53
115 116 2.484062 GGCATTGACCTGATGGCGG 61.484 63.158 0.00 0.00 39.73 6.13
116 117 3.113745 GGCATTGACCTGATGGCG 58.886 61.111 0.00 0.00 39.73 5.69
117 118 0.820891 ATCGGCATTGACCTGATGGC 60.821 55.000 1.07 1.07 44.09 4.40
118 119 0.949397 CATCGGCATTGACCTGATGG 59.051 55.000 15.44 0.00 37.22 3.51
119 120 1.671979 ACATCGGCATTGACCTGATG 58.328 50.000 18.36 18.36 41.92 3.07
120 121 2.019249 CAACATCGGCATTGACCTGAT 58.981 47.619 0.00 0.00 0.00 2.90
121 122 1.452110 CAACATCGGCATTGACCTGA 58.548 50.000 0.00 0.00 0.00 3.86
122 123 0.452987 CCAACATCGGCATTGACCTG 59.547 55.000 0.00 0.00 0.00 4.00
123 124 2.872408 CCAACATCGGCATTGACCT 58.128 52.632 0.00 0.00 0.00 3.85
143 144 4.729918 CAGTGGGTGGCAGGCCTC 62.730 72.222 0.00 7.88 36.94 4.70
154 155 0.392998 CCGAATCCAAGACCAGTGGG 60.393 60.000 15.21 0.00 36.73 4.61
155 156 0.324943 ACCGAATCCAAGACCAGTGG 59.675 55.000 7.91 7.91 37.51 4.00
156 157 1.806542 CAACCGAATCCAAGACCAGTG 59.193 52.381 0.00 0.00 0.00 3.66
157 158 1.882352 GCAACCGAATCCAAGACCAGT 60.882 52.381 0.00 0.00 0.00 4.00
158 159 0.804989 GCAACCGAATCCAAGACCAG 59.195 55.000 0.00 0.00 0.00 4.00
159 160 0.400213 AGCAACCGAATCCAAGACCA 59.600 50.000 0.00 0.00 0.00 4.02
160 161 0.804989 CAGCAACCGAATCCAAGACC 59.195 55.000 0.00 0.00 0.00 3.85
161 162 1.523758 ACAGCAACCGAATCCAAGAC 58.476 50.000 0.00 0.00 0.00 3.01
162 163 2.354704 CCTACAGCAACCGAATCCAAGA 60.355 50.000 0.00 0.00 0.00 3.02
163 164 2.009774 CCTACAGCAACCGAATCCAAG 58.990 52.381 0.00 0.00 0.00 3.61
164 165 1.948611 GCCTACAGCAACCGAATCCAA 60.949 52.381 0.00 0.00 42.97 3.53
165 166 0.392461 GCCTACAGCAACCGAATCCA 60.392 55.000 0.00 0.00 42.97 3.41
166 167 1.429148 CGCCTACAGCAACCGAATCC 61.429 60.000 0.00 0.00 44.04 3.01
167 168 2.006772 CGCCTACAGCAACCGAATC 58.993 57.895 0.00 0.00 44.04 2.52
168 169 2.106683 GCGCCTACAGCAACCGAAT 61.107 57.895 0.00 0.00 44.04 3.34
169 170 2.740826 GCGCCTACAGCAACCGAA 60.741 61.111 0.00 0.00 44.04 4.30
170 171 3.691342 AGCGCCTACAGCAACCGA 61.691 61.111 2.29 0.00 44.04 4.69
171 172 3.490759 CAGCGCCTACAGCAACCG 61.491 66.667 2.29 0.00 44.04 4.44
172 173 3.804193 GCAGCGCCTACAGCAACC 61.804 66.667 2.29 0.00 44.04 3.77
173 174 2.743928 AGCAGCGCCTACAGCAAC 60.744 61.111 2.29 0.00 44.04 4.17
174 175 2.743538 CAGCAGCGCCTACAGCAA 60.744 61.111 2.29 0.00 44.04 3.91
175 176 4.765449 CCAGCAGCGCCTACAGCA 62.765 66.667 2.29 0.00 44.04 4.41
177 178 4.845580 CCCCAGCAGCGCCTACAG 62.846 72.222 2.29 0.00 0.00 2.74
208 209 4.508128 ATGGTACGTCCGCCGCTG 62.508 66.667 0.00 0.00 41.42 5.18
209 210 3.766691 AATGGTACGTCCGCCGCT 61.767 61.111 0.00 0.00 41.42 5.52
210 211 3.560278 CAATGGTACGTCCGCCGC 61.560 66.667 0.00 0.00 41.42 6.53
211 212 1.418342 CTTCAATGGTACGTCCGCCG 61.418 60.000 0.00 0.00 44.03 6.46
212 213 0.108520 TCTTCAATGGTACGTCCGCC 60.109 55.000 0.00 0.00 39.52 6.13
213 214 1.717194 TTCTTCAATGGTACGTCCGC 58.283 50.000 0.00 0.00 39.52 5.54
214 215 3.489785 GCTATTCTTCAATGGTACGTCCG 59.510 47.826 0.00 0.00 39.52 4.79
215 216 4.270325 GTGCTATTCTTCAATGGTACGTCC 59.730 45.833 0.00 0.00 28.93 4.79
216 217 4.270325 GGTGCTATTCTTCAATGGTACGTC 59.730 45.833 0.00 0.00 37.08 4.34
217 218 4.189231 GGTGCTATTCTTCAATGGTACGT 58.811 43.478 0.00 0.00 37.08 3.57
218 219 4.188462 TGGTGCTATTCTTCAATGGTACG 58.812 43.478 0.00 0.00 37.08 3.67
219 220 5.066505 CCTTGGTGCTATTCTTCAATGGTAC 59.933 44.000 0.00 0.00 35.97 3.34
220 221 5.192927 CCTTGGTGCTATTCTTCAATGGTA 58.807 41.667 0.00 0.00 0.00 3.25
221 222 4.019174 CCTTGGTGCTATTCTTCAATGGT 58.981 43.478 0.00 0.00 0.00 3.55
222 223 3.382546 CCCTTGGTGCTATTCTTCAATGG 59.617 47.826 0.00 0.00 0.00 3.16
223 224 4.096984 GTCCCTTGGTGCTATTCTTCAATG 59.903 45.833 0.00 0.00 0.00 2.82
224 225 4.273318 GTCCCTTGGTGCTATTCTTCAAT 58.727 43.478 0.00 0.00 0.00 2.57
225 226 3.686016 GTCCCTTGGTGCTATTCTTCAA 58.314 45.455 0.00 0.00 0.00 2.69
226 227 2.354704 CGTCCCTTGGTGCTATTCTTCA 60.355 50.000 0.00 0.00 0.00 3.02
227 228 2.280628 CGTCCCTTGGTGCTATTCTTC 58.719 52.381 0.00 0.00 0.00 2.87
228 229 1.065418 CCGTCCCTTGGTGCTATTCTT 60.065 52.381 0.00 0.00 0.00 2.52
229 230 0.541863 CCGTCCCTTGGTGCTATTCT 59.458 55.000 0.00 0.00 0.00 2.40
230 231 0.252197 ACCGTCCCTTGGTGCTATTC 59.748 55.000 0.00 0.00 38.60 1.75
231 232 2.383608 ACCGTCCCTTGGTGCTATT 58.616 52.632 0.00 0.00 38.60 1.73
232 233 4.147135 ACCGTCCCTTGGTGCTAT 57.853 55.556 0.00 0.00 38.60 2.97
237 238 2.446994 TCCACACCGTCCCTTGGT 60.447 61.111 0.00 0.00 41.47 3.67
238 239 2.172483 CTCTCCACACCGTCCCTTGG 62.172 65.000 0.00 0.00 0.00 3.61
239 240 1.293498 CTCTCCACACCGTCCCTTG 59.707 63.158 0.00 0.00 0.00 3.61
240 241 1.152312 ACTCTCCACACCGTCCCTT 60.152 57.895 0.00 0.00 0.00 3.95
241 242 1.908793 CACTCTCCACACCGTCCCT 60.909 63.158 0.00 0.00 0.00 4.20
242 243 1.878656 CTCACTCTCCACACCGTCCC 61.879 65.000 0.00 0.00 0.00 4.46
243 244 0.894184 TCTCACTCTCCACACCGTCC 60.894 60.000 0.00 0.00 0.00 4.79
244 245 0.523966 CTCTCACTCTCCACACCGTC 59.476 60.000 0.00 0.00 0.00 4.79
245 246 0.110678 TCTCTCACTCTCCACACCGT 59.889 55.000 0.00 0.00 0.00 4.83
246 247 1.468985 ATCTCTCACTCTCCACACCG 58.531 55.000 0.00 0.00 0.00 4.94
247 248 3.380004 CACTATCTCTCACTCTCCACACC 59.620 52.174 0.00 0.00 0.00 4.16
248 249 3.380004 CCACTATCTCTCACTCTCCACAC 59.620 52.174 0.00 0.00 0.00 3.82
249 250 3.010696 ACCACTATCTCTCACTCTCCACA 59.989 47.826 0.00 0.00 0.00 4.17
250 251 3.380004 CACCACTATCTCTCACTCTCCAC 59.620 52.174 0.00 0.00 0.00 4.02
251 252 3.010696 ACACCACTATCTCTCACTCTCCA 59.989 47.826 0.00 0.00 0.00 3.86
252 253 3.380004 CACACCACTATCTCTCACTCTCC 59.620 52.174 0.00 0.00 0.00 3.71
253 254 4.265893 TCACACCACTATCTCTCACTCTC 58.734 47.826 0.00 0.00 0.00 3.20
254 255 4.308526 TCACACCACTATCTCTCACTCT 57.691 45.455 0.00 0.00 0.00 3.24
255 256 5.126222 TCATTCACACCACTATCTCTCACTC 59.874 44.000 0.00 0.00 0.00 3.51
256 257 5.019470 TCATTCACACCACTATCTCTCACT 58.981 41.667 0.00 0.00 0.00 3.41
257 258 5.330455 TCATTCACACCACTATCTCTCAC 57.670 43.478 0.00 0.00 0.00 3.51
258 259 4.403752 CCTCATTCACACCACTATCTCTCA 59.596 45.833 0.00 0.00 0.00 3.27
259 260 4.646945 TCCTCATTCACACCACTATCTCTC 59.353 45.833 0.00 0.00 0.00 3.20
260 261 4.614475 TCCTCATTCACACCACTATCTCT 58.386 43.478 0.00 0.00 0.00 3.10
261 262 4.404073 ACTCCTCATTCACACCACTATCTC 59.596 45.833 0.00 0.00 0.00 2.75
262 263 4.161189 CACTCCTCATTCACACCACTATCT 59.839 45.833 0.00 0.00 0.00 1.98
263 264 4.437239 CACTCCTCATTCACACCACTATC 58.563 47.826 0.00 0.00 0.00 2.08
264 265 3.198635 CCACTCCTCATTCACACCACTAT 59.801 47.826 0.00 0.00 0.00 2.12
265 266 2.567169 CCACTCCTCATTCACACCACTA 59.433 50.000 0.00 0.00 0.00 2.74
266 267 1.349026 CCACTCCTCATTCACACCACT 59.651 52.381 0.00 0.00 0.00 4.00
267 268 1.611673 CCCACTCCTCATTCACACCAC 60.612 57.143 0.00 0.00 0.00 4.16
268 269 0.692476 CCCACTCCTCATTCACACCA 59.308 55.000 0.00 0.00 0.00 4.17
269 270 0.678048 GCCCACTCCTCATTCACACC 60.678 60.000 0.00 0.00 0.00 4.16
270 271 0.036732 TGCCCACTCCTCATTCACAC 59.963 55.000 0.00 0.00 0.00 3.82
271 272 0.325933 CTGCCCACTCCTCATTCACA 59.674 55.000 0.00 0.00 0.00 3.58
272 273 0.326264 ACTGCCCACTCCTCATTCAC 59.674 55.000 0.00 0.00 0.00 3.18
273 274 0.325933 CACTGCCCACTCCTCATTCA 59.674 55.000 0.00 0.00 0.00 2.57
274 275 0.615331 TCACTGCCCACTCCTCATTC 59.385 55.000 0.00 0.00 0.00 2.67
275 276 0.326264 GTCACTGCCCACTCCTCATT 59.674 55.000 0.00 0.00 0.00 2.57
276 277 0.837691 TGTCACTGCCCACTCCTCAT 60.838 55.000 0.00 0.00 0.00 2.90
277 278 1.459348 TGTCACTGCCCACTCCTCA 60.459 57.895 0.00 0.00 0.00 3.86
278 279 1.004440 GTGTCACTGCCCACTCCTC 60.004 63.158 0.00 0.00 0.00 3.71
279 280 2.520536 GGTGTCACTGCCCACTCCT 61.521 63.158 2.35 0.00 0.00 3.69
280 281 2.032681 GGTGTCACTGCCCACTCC 59.967 66.667 2.35 0.00 0.00 3.85
281 282 1.302033 CTGGTGTCACTGCCCACTC 60.302 63.158 2.35 0.00 0.00 3.51
282 283 1.762522 CTCTGGTGTCACTGCCCACT 61.763 60.000 2.35 0.00 0.00 4.00
283 284 1.302033 CTCTGGTGTCACTGCCCAC 60.302 63.158 2.35 0.00 0.00 4.61
284 285 2.519622 CCTCTGGTGTCACTGCCCA 61.520 63.158 2.35 0.00 0.00 5.36
285 286 2.348998 CCTCTGGTGTCACTGCCC 59.651 66.667 2.35 0.00 0.00 5.36
286 287 2.348998 CCCTCTGGTGTCACTGCC 59.651 66.667 2.35 0.00 0.00 4.85
287 288 3.151906 ACCCTCTGGTGTCACTGC 58.848 61.111 2.35 0.00 45.58 4.40
296 297 0.042731 TAACTCCCCTCACCCTCTGG 59.957 60.000 0.00 0.00 37.80 3.86
297 298 1.765314 CATAACTCCCCTCACCCTCTG 59.235 57.143 0.00 0.00 0.00 3.35
298 299 1.651770 TCATAACTCCCCTCACCCTCT 59.348 52.381 0.00 0.00 0.00 3.69
299 300 2.043227 CTCATAACTCCCCTCACCCTC 58.957 57.143 0.00 0.00 0.00 4.30
300 301 1.651770 TCTCATAACTCCCCTCACCCT 59.348 52.381 0.00 0.00 0.00 4.34
301 302 1.763545 GTCTCATAACTCCCCTCACCC 59.236 57.143 0.00 0.00 0.00 4.61
302 303 2.467880 TGTCTCATAACTCCCCTCACC 58.532 52.381 0.00 0.00 0.00 4.02
303 304 3.070302 GGATGTCTCATAACTCCCCTCAC 59.930 52.174 0.00 0.00 0.00 3.51
304 305 3.051803 AGGATGTCTCATAACTCCCCTCA 60.052 47.826 0.00 0.00 0.00 3.86
305 306 3.582164 AGGATGTCTCATAACTCCCCTC 58.418 50.000 0.00 0.00 0.00 4.30
306 307 3.715648 AGGATGTCTCATAACTCCCCT 57.284 47.619 0.00 0.00 0.00 4.79
307 308 4.468153 GGATAGGATGTCTCATAACTCCCC 59.532 50.000 0.00 0.00 0.00 4.81
308 309 4.158764 CGGATAGGATGTCTCATAACTCCC 59.841 50.000 0.00 0.00 0.00 4.30
309 310 4.767928 ACGGATAGGATGTCTCATAACTCC 59.232 45.833 0.00 0.00 0.00 3.85
310 311 5.708230 AGACGGATAGGATGTCTCATAACTC 59.292 44.000 0.00 0.00 38.55 3.01
311 312 5.636123 AGACGGATAGGATGTCTCATAACT 58.364 41.667 0.00 0.00 38.55 2.24
312 313 5.968528 AGACGGATAGGATGTCTCATAAC 57.031 43.478 0.00 0.00 38.55 1.89
318 319 1.499438 TGGGAGACGGATAGGATGTCT 59.501 52.381 0.00 0.00 45.18 3.41
319 320 1.614413 GTGGGAGACGGATAGGATGTC 59.386 57.143 0.00 0.00 0.00 3.06
320 321 1.705873 GTGGGAGACGGATAGGATGT 58.294 55.000 0.00 0.00 0.00 3.06
321 322 0.598562 CGTGGGAGACGGATAGGATG 59.401 60.000 0.00 0.00 44.85 3.51
322 323 3.037941 CGTGGGAGACGGATAGGAT 57.962 57.895 0.00 0.00 44.85 3.24
323 324 4.573210 CGTGGGAGACGGATAGGA 57.427 61.111 0.00 0.00 44.85 2.94
331 332 1.080025 CTCGGGAAACGTGGGAGAC 60.080 63.158 0.00 0.00 44.69 3.36
332 333 3.373226 CTCGGGAAACGTGGGAGA 58.627 61.111 0.00 0.00 44.69 3.71
337 338 3.039202 GCATGCCTCGGGAAACGTG 62.039 63.158 6.36 0.00 44.69 4.49
338 339 2.746277 GCATGCCTCGGGAAACGT 60.746 61.111 6.36 0.00 44.69 3.99
339 340 2.745884 TGCATGCCTCGGGAAACG 60.746 61.111 16.68 0.00 46.11 3.60
340 341 3.056313 GCTGCATGCCTCGGGAAAC 62.056 63.158 16.68 0.00 35.15 2.78
341 342 2.751436 GCTGCATGCCTCGGGAAA 60.751 61.111 16.68 0.00 35.15 3.13
345 346 3.570638 CTTCGCTGCATGCCTCGG 61.571 66.667 22.65 9.88 38.78 4.63
346 347 3.570638 CCTTCGCTGCATGCCTCG 61.571 66.667 16.68 17.95 38.78 4.63
347 348 3.207669 CCCTTCGCTGCATGCCTC 61.208 66.667 16.68 5.69 38.78 4.70
348 349 4.809496 CCCCTTCGCTGCATGCCT 62.809 66.667 16.68 0.00 38.78 4.75
351 352 3.818787 GTGCCCCTTCGCTGCATG 61.819 66.667 0.00 0.00 37.34 4.06
366 367 2.368131 TTTTTGTCGAGCCACGCGTG 62.368 55.000 31.77 31.77 42.26 5.34
367 368 2.174969 TTTTTGTCGAGCCACGCGT 61.175 52.632 5.58 5.58 42.26 6.01
368 369 1.721133 GTTTTTGTCGAGCCACGCG 60.721 57.895 3.53 3.53 42.26 6.01
369 370 0.657368 CAGTTTTTGTCGAGCCACGC 60.657 55.000 0.00 0.00 42.26 5.34
370 371 0.657368 GCAGTTTTTGTCGAGCCACG 60.657 55.000 0.00 0.00 44.09 4.94
371 372 0.317854 GGCAGTTTTTGTCGAGCCAC 60.318 55.000 3.40 0.00 41.63 5.01
372 373 2.029743 GGCAGTTTTTGTCGAGCCA 58.970 52.632 3.40 0.00 41.63 4.75
373 374 4.944249 GGCAGTTTTTGTCGAGCC 57.056 55.556 0.00 0.00 34.71 4.70
378 379 1.963747 CCGAATCGGCAGTTTTTGTC 58.036 50.000 9.39 0.00 41.17 3.18
390 391 1.423845 CAGGAAAACGGCCGAATCG 59.576 57.895 35.90 4.58 0.00 3.34
391 392 1.136774 GCAGGAAAACGGCCGAATC 59.863 57.895 35.90 24.52 33.91 2.52
392 393 2.686816 CGCAGGAAAACGGCCGAAT 61.687 57.895 35.90 18.04 36.92 3.34
393 394 3.350612 CGCAGGAAAACGGCCGAA 61.351 61.111 35.90 0.00 36.92 4.30
394 395 3.696173 TATTCGCAGGAAAACGGCCGA 62.696 52.381 35.90 4.26 36.92 5.54
395 396 1.363145 TATTCGCAGGAAAACGGCCG 61.363 55.000 26.86 26.86 36.92 6.13
396 397 0.377203 CTATTCGCAGGAAAACGGCC 59.623 55.000 0.00 0.00 36.92 6.13
397 398 0.377203 CCTATTCGCAGGAAAACGGC 59.623 55.000 0.00 0.00 38.00 5.68
398 399 0.377203 GCCTATTCGCAGGAAAACGG 59.623 55.000 2.13 0.00 38.00 4.44
399 400 0.377203 GGCCTATTCGCAGGAAAACG 59.623 55.000 0.00 0.00 38.00 3.60
400 401 0.738975 GGGCCTATTCGCAGGAAAAC 59.261 55.000 0.84 0.00 38.00 2.43
401 402 0.329931 TGGGCCTATTCGCAGGAAAA 59.670 50.000 4.53 0.00 38.00 2.29
402 403 0.107214 CTGGGCCTATTCGCAGGAAA 60.107 55.000 4.53 0.00 41.57 3.13
403 404 0.980754 TCTGGGCCTATTCGCAGGAA 60.981 55.000 4.53 0.00 44.27 3.36
404 405 0.980754 TTCTGGGCCTATTCGCAGGA 60.981 55.000 4.53 0.00 44.27 3.86
405 406 0.107214 TTTCTGGGCCTATTCGCAGG 60.107 55.000 4.53 0.00 44.27 4.85
406 407 1.605710 CATTTCTGGGCCTATTCGCAG 59.394 52.381 4.53 0.00 45.13 5.18
407 408 1.679139 CATTTCTGGGCCTATTCGCA 58.321 50.000 4.53 0.00 0.00 5.10
408 409 0.312102 GCATTTCTGGGCCTATTCGC 59.688 55.000 4.53 0.00 0.00 4.70
409 410 1.972872 AGCATTTCTGGGCCTATTCG 58.027 50.000 4.53 0.00 0.00 3.34
410 411 5.360999 ACTTAAAGCATTTCTGGGCCTATTC 59.639 40.000 4.53 0.00 40.09 1.75
411 412 5.272402 ACTTAAAGCATTTCTGGGCCTATT 58.728 37.500 4.53 0.00 40.09 1.73
412 413 4.871822 ACTTAAAGCATTTCTGGGCCTAT 58.128 39.130 4.53 0.00 40.09 2.57
413 414 4.316025 ACTTAAAGCATTTCTGGGCCTA 57.684 40.909 4.53 0.00 40.09 3.93
414 415 3.175438 ACTTAAAGCATTTCTGGGCCT 57.825 42.857 4.53 0.00 40.09 5.19
415 416 3.368427 GGAACTTAAAGCATTTCTGGGCC 60.368 47.826 0.00 0.00 40.09 5.80
416 417 3.673323 CGGAACTTAAAGCATTTCTGGGC 60.673 47.826 0.00 0.00 40.09 5.36
417 418 3.506067 ACGGAACTTAAAGCATTTCTGGG 59.494 43.478 0.00 0.00 40.09 4.45
418 419 4.475944 CACGGAACTTAAAGCATTTCTGG 58.524 43.478 0.00 0.00 40.09 3.86
419 420 3.914364 GCACGGAACTTAAAGCATTTCTG 59.086 43.478 0.00 0.00 40.09 3.02
420 421 3.364964 CGCACGGAACTTAAAGCATTTCT 60.365 43.478 0.00 0.00 40.09 2.52
421 422 2.908626 CGCACGGAACTTAAAGCATTTC 59.091 45.455 0.00 0.00 40.09 2.17
422 423 2.351350 CCGCACGGAACTTAAAGCATTT 60.351 45.455 2.01 0.00 38.88 2.32
423 424 1.199097 CCGCACGGAACTTAAAGCATT 59.801 47.619 2.01 0.00 37.50 3.56
424 425 0.802494 CCGCACGGAACTTAAAGCAT 59.198 50.000 2.01 0.00 37.50 3.79
425 426 1.847890 GCCGCACGGAACTTAAAGCA 61.848 55.000 14.43 0.00 37.50 3.91
426 427 1.154282 GCCGCACGGAACTTAAAGC 60.154 57.895 14.43 0.00 37.50 3.51
427 428 0.953960 AGGCCGCACGGAACTTAAAG 60.954 55.000 14.43 0.00 37.50 1.85
428 429 1.071814 AGGCCGCACGGAACTTAAA 59.928 52.632 14.43 0.00 37.50 1.52
429 430 1.669760 CAGGCCGCACGGAACTTAA 60.670 57.895 14.43 0.00 37.50 1.85
430 431 2.047655 CAGGCCGCACGGAACTTA 60.048 61.111 14.43 0.00 37.50 2.24
431 432 3.883744 CTCAGGCCGCACGGAACTT 62.884 63.158 14.43 0.00 37.50 2.66
432 433 4.379243 CTCAGGCCGCACGGAACT 62.379 66.667 14.43 7.09 37.50 3.01
433 434 3.876589 TTCTCAGGCCGCACGGAAC 62.877 63.158 14.43 4.61 37.50 3.62
434 435 3.589654 CTTCTCAGGCCGCACGGAA 62.590 63.158 14.43 0.00 37.50 4.30
435 436 4.069232 CTTCTCAGGCCGCACGGA 62.069 66.667 14.43 0.00 37.50 4.69
436 437 4.379243 ACTTCTCAGGCCGCACGG 62.379 66.667 4.30 4.30 38.57 4.94
437 438 3.114616 CACTTCTCAGGCCGCACG 61.115 66.667 0.00 0.00 0.00 5.34
438 439 2.527951 ATCCACTTCTCAGGCCGCAC 62.528 60.000 0.00 0.00 0.00 5.34
439 440 2.293318 ATCCACTTCTCAGGCCGCA 61.293 57.895 0.00 0.00 0.00 5.69
440 441 1.817099 CATCCACTTCTCAGGCCGC 60.817 63.158 0.00 0.00 0.00 6.53
441 442 1.817099 GCATCCACTTCTCAGGCCG 60.817 63.158 0.00 0.00 0.00 6.13
442 443 0.322816 TTGCATCCACTTCTCAGGCC 60.323 55.000 0.00 0.00 0.00 5.19
443 444 1.093159 CTTGCATCCACTTCTCAGGC 58.907 55.000 0.00 0.00 0.00 4.85
444 445 2.289882 TGACTTGCATCCACTTCTCAGG 60.290 50.000 0.00 0.00 0.00 3.86
445 446 2.740981 GTGACTTGCATCCACTTCTCAG 59.259 50.000 0.00 0.00 0.00 3.35
446 447 2.771089 GTGACTTGCATCCACTTCTCA 58.229 47.619 0.00 0.00 0.00 3.27
447 448 1.728971 CGTGACTTGCATCCACTTCTC 59.271 52.381 10.51 0.00 0.00 2.87
448 449 1.800805 CGTGACTTGCATCCACTTCT 58.199 50.000 10.51 0.00 0.00 2.85
449 450 0.166814 GCGTGACTTGCATCCACTTC 59.833 55.000 10.51 1.69 0.00 3.01
450 451 0.534877 TGCGTGACTTGCATCCACTT 60.535 50.000 10.51 0.00 37.44 3.16
451 452 0.534877 TTGCGTGACTTGCATCCACT 60.535 50.000 10.51 0.00 42.84 4.00
452 453 0.385974 GTTGCGTGACTTGCATCCAC 60.386 55.000 0.00 0.00 42.84 4.02
453 454 1.514678 GGTTGCGTGACTTGCATCCA 61.515 55.000 9.53 0.00 46.62 3.41
454 455 1.210155 GGTTGCGTGACTTGCATCC 59.790 57.895 0.00 0.00 42.84 3.51
455 456 0.310543 TTGGTTGCGTGACTTGCATC 59.689 50.000 0.00 0.00 42.84 3.91
456 457 0.743688 TTTGGTTGCGTGACTTGCAT 59.256 45.000 0.00 0.00 42.84 3.96
457 458 0.179150 GTTTGGTTGCGTGACTTGCA 60.179 50.000 0.00 0.00 41.38 4.08
458 459 0.179150 TGTTTGGTTGCGTGACTTGC 60.179 50.000 0.00 0.00 0.00 4.01
459 460 2.490328 ATGTTTGGTTGCGTGACTTG 57.510 45.000 0.00 0.00 0.00 3.16
460 461 2.292292 GGTATGTTTGGTTGCGTGACTT 59.708 45.455 0.00 0.00 0.00 3.01
461 462 1.877443 GGTATGTTTGGTTGCGTGACT 59.123 47.619 0.00 0.00 0.00 3.41
462 463 1.604755 TGGTATGTTTGGTTGCGTGAC 59.395 47.619 0.00 0.00 0.00 3.67
463 464 1.968704 TGGTATGTTTGGTTGCGTGA 58.031 45.000 0.00 0.00 0.00 4.35
464 465 3.296322 AATGGTATGTTTGGTTGCGTG 57.704 42.857 0.00 0.00 0.00 5.34
465 466 4.329462 AAAATGGTATGTTTGGTTGCGT 57.671 36.364 0.00 0.00 0.00 5.24
466 467 6.959671 ATAAAAATGGTATGTTTGGTTGCG 57.040 33.333 0.00 0.00 0.00 4.85
467 468 7.412455 CGGAATAAAAATGGTATGTTTGGTTGC 60.412 37.037 0.00 0.00 0.00 4.17
468 469 7.412455 GCGGAATAAAAATGGTATGTTTGGTTG 60.412 37.037 0.00 0.00 0.00 3.77
469 470 6.592220 GCGGAATAAAAATGGTATGTTTGGTT 59.408 34.615 0.00 0.00 0.00 3.67
470 471 6.103330 GCGGAATAAAAATGGTATGTTTGGT 58.897 36.000 0.00 0.00 0.00 3.67
471 472 6.035542 GTGCGGAATAAAAATGGTATGTTTGG 59.964 38.462 0.00 0.00 0.00 3.28
472 473 6.237437 CGTGCGGAATAAAAATGGTATGTTTG 60.237 38.462 0.00 0.00 0.00 2.93
473 474 5.802956 CGTGCGGAATAAAAATGGTATGTTT 59.197 36.000 0.00 0.00 0.00 2.83
474 475 5.106078 ACGTGCGGAATAAAAATGGTATGTT 60.106 36.000 0.00 0.00 0.00 2.71
475 476 4.396790 ACGTGCGGAATAAAAATGGTATGT 59.603 37.500 0.00 0.00 0.00 2.29
476 477 4.732923 CACGTGCGGAATAAAAATGGTATG 59.267 41.667 0.82 0.00 0.00 2.39
477 478 4.396790 ACACGTGCGGAATAAAAATGGTAT 59.603 37.500 17.22 0.00 0.00 2.73
478 479 3.752222 ACACGTGCGGAATAAAAATGGTA 59.248 39.130 17.22 0.00 0.00 3.25
479 480 2.554893 ACACGTGCGGAATAAAAATGGT 59.445 40.909 17.22 0.00 0.00 3.55
480 481 3.119990 AGACACGTGCGGAATAAAAATGG 60.120 43.478 17.22 0.00 0.00 3.16
481 482 3.845775 CAGACACGTGCGGAATAAAAATG 59.154 43.478 17.22 0.00 0.00 2.32
482 483 3.119990 CCAGACACGTGCGGAATAAAAAT 60.120 43.478 17.22 0.00 0.00 1.82
483 484 2.224549 CCAGACACGTGCGGAATAAAAA 59.775 45.455 17.22 0.00 0.00 1.94
484 485 1.801771 CCAGACACGTGCGGAATAAAA 59.198 47.619 17.22 0.00 0.00 1.52
485 486 1.270412 ACCAGACACGTGCGGAATAAA 60.270 47.619 22.06 0.00 0.00 1.40
486 487 0.319083 ACCAGACACGTGCGGAATAA 59.681 50.000 22.06 0.00 0.00 1.40
487 488 0.319083 AACCAGACACGTGCGGAATA 59.681 50.000 22.06 0.00 0.00 1.75
488 489 1.070786 AACCAGACACGTGCGGAAT 59.929 52.632 22.06 10.19 0.00 3.01
489 490 1.885388 CAACCAGACACGTGCGGAA 60.885 57.895 22.06 0.00 0.00 4.30
490 491 2.279851 CAACCAGACACGTGCGGA 60.280 61.111 22.06 0.00 0.00 5.54
491 492 3.345808 CCAACCAGACACGTGCGG 61.346 66.667 17.22 16.24 0.00 5.69
492 493 1.626654 GATCCAACCAGACACGTGCG 61.627 60.000 17.22 4.18 0.00 5.34
493 494 0.320771 AGATCCAACCAGACACGTGC 60.321 55.000 17.22 8.74 0.00 5.34
494 495 2.881074 CTAGATCCAACCAGACACGTG 58.119 52.381 15.48 15.48 0.00 4.49
495 496 1.204941 GCTAGATCCAACCAGACACGT 59.795 52.381 0.00 0.00 0.00 4.49
496 497 1.799181 CGCTAGATCCAACCAGACACG 60.799 57.143 0.00 0.00 0.00 4.49
497 498 1.927895 CGCTAGATCCAACCAGACAC 58.072 55.000 0.00 0.00 0.00 3.67
498 499 0.175760 GCGCTAGATCCAACCAGACA 59.824 55.000 0.00 0.00 0.00 3.41
499 500 0.872021 CGCGCTAGATCCAACCAGAC 60.872 60.000 5.56 0.00 0.00 3.51
500 501 1.437573 CGCGCTAGATCCAACCAGA 59.562 57.895 5.56 0.00 0.00 3.86
501 502 1.592669 CCGCGCTAGATCCAACCAG 60.593 63.158 5.56 0.00 0.00 4.00
502 503 2.499205 CCGCGCTAGATCCAACCA 59.501 61.111 5.56 0.00 0.00 3.67
503 504 2.280186 CCCGCGCTAGATCCAACC 60.280 66.667 5.56 0.00 0.00 3.77
504 505 2.967615 GCCCGCGCTAGATCCAAC 60.968 66.667 5.56 0.00 0.00 3.77
505 506 3.025189 TTGCCCGCGCTAGATCCAA 62.025 57.895 5.56 0.00 35.36 3.53
506 507 3.466314 TTGCCCGCGCTAGATCCA 61.466 61.111 5.56 0.00 35.36 3.41
507 508 2.967615 GTTGCCCGCGCTAGATCC 60.968 66.667 5.56 0.00 35.36 3.36
508 509 2.967615 GGTTGCCCGCGCTAGATC 60.968 66.667 5.56 0.00 35.36 2.75
509 510 3.740128 CTGGTTGCCCGCGCTAGAT 62.740 63.158 5.56 0.00 35.36 1.98
510 511 4.451150 CTGGTTGCCCGCGCTAGA 62.451 66.667 5.56 0.00 35.36 2.43
511 512 4.451150 TCTGGTTGCCCGCGCTAG 62.451 66.667 5.56 0.00 35.36 3.42
512 513 4.752879 GTCTGGTTGCCCGCGCTA 62.753 66.667 5.56 0.00 35.36 4.26
516 517 3.660111 GTGTGTCTGGTTGCCCGC 61.660 66.667 0.00 0.00 0.00 6.13
517 518 2.978010 GGTGTGTCTGGTTGCCCG 60.978 66.667 0.00 0.00 0.00 6.13
518 519 2.597510 GGGTGTGTCTGGTTGCCC 60.598 66.667 0.00 0.00 0.00 5.36
519 520 2.978010 CGGGTGTGTCTGGTTGCC 60.978 66.667 0.00 0.00 0.00 4.52
520 521 1.822186 AACGGGTGTGTCTGGTTGC 60.822 57.895 0.00 0.00 0.00 4.17
521 522 0.746563 ACAACGGGTGTGTCTGGTTG 60.747 55.000 0.00 1.08 39.72 3.77
522 523 1.605453 ACAACGGGTGTGTCTGGTT 59.395 52.632 0.00 0.00 39.72 3.67
523 524 3.316029 ACAACGGGTGTGTCTGGT 58.684 55.556 0.00 0.00 39.72 4.00
532 533 1.857837 CGTACGTAAAACACAACGGGT 59.142 47.619 7.22 0.00 43.25 5.28
533 534 1.857837 ACGTACGTAAAACACAACGGG 59.142 47.619 21.41 0.00 43.25 5.28
534 535 2.878042 CACGTACGTAAAACACAACGG 58.122 47.619 22.34 0.00 43.25 4.44
535 536 2.280258 GCACGTACGTAAAACACAACG 58.720 47.619 22.34 5.62 44.47 4.10
536 537 3.301432 TGCACGTACGTAAAACACAAC 57.699 42.857 22.34 3.00 0.00 3.32
537 538 3.303197 CCATGCACGTACGTAAAACACAA 60.303 43.478 22.34 1.01 0.00 3.33
538 539 2.221286 CCATGCACGTACGTAAAACACA 59.779 45.455 22.34 12.44 0.00 3.72
539 540 2.829928 CCATGCACGTACGTAAAACAC 58.170 47.619 22.34 7.13 0.00 3.32
540 541 1.194997 GCCATGCACGTACGTAAAACA 59.805 47.619 22.34 16.62 0.00 2.83
541 542 1.784115 CGCCATGCACGTACGTAAAAC 60.784 52.381 22.34 11.41 0.00 2.43
542 543 0.439214 CGCCATGCACGTACGTAAAA 59.561 50.000 22.34 9.93 0.00 1.52
543 544 0.388263 TCGCCATGCACGTACGTAAA 60.388 50.000 22.34 12.64 0.00 2.01
544 545 1.072116 GTCGCCATGCACGTACGTAA 61.072 55.000 22.34 13.03 0.00 3.18
545 546 1.514657 GTCGCCATGCACGTACGTA 60.515 57.895 22.34 7.01 0.00 3.57
556 557 2.440796 CCTGCCATTGGTCGCCAT 60.441 61.111 4.26 0.00 31.53 4.40
563 564 2.263540 GCAACAGCCTGCCATTGG 59.736 61.111 0.00 0.00 36.25 3.16
702 703 2.086869 GCTTTGCTGCTGACAAGGATA 58.913 47.619 0.00 0.00 0.00 2.59
756 757 9.987272 ACATTCTTTCTTTTTCTAGGGAATTTG 57.013 29.630 0.00 0.00 0.00 2.32
839 861 3.644399 GACGGAGGAGCGGTGGTTC 62.644 68.421 0.00 0.00 0.00 3.62
860 882 1.736032 CGTTCTAGAGAAAGGCGTGGG 60.736 57.143 0.00 0.00 35.58 4.61
888 910 5.381184 TTGCTATGGCCTCCTTTTATACA 57.619 39.130 3.32 0.00 37.74 2.29
904 957 3.118629 TCGATGAGTTCCTGCTTTGCTAT 60.119 43.478 0.00 0.00 0.00 2.97
933 987 1.112315 CAGGACTCGGAGCTGGCTAT 61.112 60.000 4.58 0.00 0.00 2.97
970 1034 5.869753 ACAGTTGTAAATGATCAGAGTGC 57.130 39.130 0.09 0.00 0.00 4.40
972 1036 8.562892 CAGAAAACAGTTGTAAATGATCAGAGT 58.437 33.333 0.09 0.00 0.00 3.24
973 1037 7.536622 GCAGAAAACAGTTGTAAATGATCAGAG 59.463 37.037 0.09 0.00 0.00 3.35
974 1038 7.013178 TGCAGAAAACAGTTGTAAATGATCAGA 59.987 33.333 0.09 0.00 0.00 3.27
975 1039 7.140705 TGCAGAAAACAGTTGTAAATGATCAG 58.859 34.615 0.09 0.00 0.00 2.90
976 1040 7.036996 TGCAGAAAACAGTTGTAAATGATCA 57.963 32.000 0.00 0.00 0.00 2.92
977 1041 7.062605 CCATGCAGAAAACAGTTGTAAATGATC 59.937 37.037 0.00 0.00 0.00 2.92
1242 1318 3.873361 TGTACGTACCTAGGAAGTCGATG 59.127 47.826 22.43 1.41 0.00 3.84
1481 1610 2.280592 GCGGTTGAACAGGTCGGT 60.281 61.111 0.00 0.00 0.00 4.69
1545 1674 4.392940 CTTCATGAAGTCCTTGAACCACT 58.607 43.478 24.65 0.00 35.01 4.00
1610 1740 7.225931 TGAAAAAGTACTGCGAGTAACAAGATT 59.774 33.333 0.00 0.00 31.62 2.40
1611 1741 6.704493 TGAAAAAGTACTGCGAGTAACAAGAT 59.296 34.615 0.00 0.00 31.62 2.40
1616 1746 5.564127 GCATTGAAAAAGTACTGCGAGTAAC 59.436 40.000 0.00 0.00 31.62 2.50
1624 1763 5.911280 CAGAGTGTGCATTGAAAAAGTACTG 59.089 40.000 0.00 0.00 31.40 2.74
1625 1764 5.590259 ACAGAGTGTGCATTGAAAAAGTACT 59.410 36.000 0.00 0.00 31.40 2.73
1626 1765 5.821204 ACAGAGTGTGCATTGAAAAAGTAC 58.179 37.500 0.00 0.00 30.75 2.73
1627 1766 6.449635 AACAGAGTGTGCATTGAAAAAGTA 57.550 33.333 0.00 0.00 0.00 2.24
1628 1767 4.989279 ACAGAGTGTGCATTGAAAAAGT 57.011 36.364 0.00 0.00 0.00 2.66
1629 1768 6.310956 TGAAAACAGAGTGTGCATTGAAAAAG 59.689 34.615 0.00 0.00 0.00 2.27
1630 1769 6.162079 TGAAAACAGAGTGTGCATTGAAAAA 58.838 32.000 0.00 0.00 0.00 1.94
1631 1770 5.718146 TGAAAACAGAGTGTGCATTGAAAA 58.282 33.333 0.00 0.00 0.00 2.29
1632 1771 5.321959 TGAAAACAGAGTGTGCATTGAAA 57.678 34.783 0.00 0.00 0.00 2.69
1633 1772 4.979943 TGAAAACAGAGTGTGCATTGAA 57.020 36.364 0.00 0.00 0.00 2.69
1689 1852 4.393062 CCTCTTGCGAATTTCTGTACACAT 59.607 41.667 0.00 0.00 0.00 3.21
1787 1950 2.526304 TTTTCTCCACCTCACTGACG 57.474 50.000 0.00 0.00 0.00 4.35
1824 1987 1.009829 GTGGCGTTGATGATGGTCTC 58.990 55.000 0.00 0.00 0.00 3.36
1862 2037 5.005779 CGTTGGATGTACTTGTGATAGAAGC 59.994 44.000 0.00 0.00 0.00 3.86
2120 2309 2.728817 GGTATGACGCCCGGAGAG 59.271 66.667 0.73 0.00 0.00 3.20
2429 2694 0.620556 TGTCTGCCCATTCTTCTCCC 59.379 55.000 0.00 0.00 0.00 4.30
2450 2718 5.003096 AGGGGAGAATCAAACAGTTCATT 57.997 39.130 0.00 0.00 36.25 2.57
2610 3060 0.322456 TGTACCCTGCTCAACATGCC 60.322 55.000 0.00 0.00 0.00 4.40
2946 3864 9.599866 CTGGTATTCTCAATGTACATAGTTGAA 57.400 33.333 9.21 11.39 32.08 2.69
2947 3865 8.758829 ACTGGTATTCTCAATGTACATAGTTGA 58.241 33.333 9.21 9.34 0.00 3.18
3002 3920 2.989840 CGTTTCAAACAACTTTGCACCA 59.010 40.909 0.22 0.00 37.31 4.17
3096 4014 5.365605 TCATGGTAAGATGTACCCTTGTAGG 59.634 44.000 7.60 0.00 36.79 3.18
3133 4051 5.021033 TCATTTCTTCCTCTGAGATCTGC 57.979 43.478 6.17 0.00 0.00 4.26
3157 4075 8.746922 TTTTCTACTTCTTATTGCTGCATTTG 57.253 30.769 1.84 0.00 0.00 2.32
3181 4117 6.593770 GCCCGAACTCCAATTTGATTTATTTT 59.406 34.615 0.00 0.00 0.00 1.82
3185 4121 3.445805 GGCCCGAACTCCAATTTGATTTA 59.554 43.478 0.00 0.00 0.00 1.40
3188 4124 1.272425 TGGCCCGAACTCCAATTTGAT 60.272 47.619 0.00 0.00 0.00 2.57
3193 4129 1.507140 TATCTGGCCCGAACTCCAAT 58.493 50.000 0.00 0.00 30.98 3.16
3195 4131 0.758734 CATATCTGGCCCGAACTCCA 59.241 55.000 0.00 0.00 0.00 3.86
3231 4167 3.872511 TGGGCAAATTGCTGTTATCTG 57.127 42.857 18.04 0.00 44.28 2.90
3251 4187 1.406539 GTTTCTGCCGCATGGATTCAT 59.593 47.619 0.00 0.00 37.49 2.57
3260 4196 0.749818 TTCTGTTGGTTTCTGCCGCA 60.750 50.000 0.00 0.00 0.00 5.69
3281 4217 4.156556 TCTGTGCAGGAATCAAATGCTTAC 59.843 41.667 0.00 0.00 40.62 2.34
3285 4221 3.581024 TTCTGTGCAGGAATCAAATGC 57.419 42.857 0.00 0.00 40.40 3.56
3288 4224 4.036734 GTCAGTTTCTGTGCAGGAATCAAA 59.963 41.667 10.88 0.00 32.61 2.69
3291 4227 3.406764 AGTCAGTTTCTGTGCAGGAATC 58.593 45.455 3.34 3.45 32.61 2.52
3292 4228 3.498774 AGTCAGTTTCTGTGCAGGAAT 57.501 42.857 3.34 0.00 32.61 3.01
3294 4230 2.564771 CAAGTCAGTTTCTGTGCAGGA 58.435 47.619 0.00 0.00 32.61 3.86
3297 4233 2.042686 AGCAAGTCAGTTTCTGTGCA 57.957 45.000 11.37 0.00 32.61 4.57
3299 4235 3.111098 GCAAAGCAAGTCAGTTTCTGTG 58.889 45.455 0.00 0.00 32.61 3.66
3312 4248 3.067883 TGTTTAGAGTGCATGCAAAGCAA 59.932 39.130 24.58 11.73 44.64 3.91
3315 4251 5.050644 TGATGTTTAGAGTGCATGCAAAG 57.949 39.130 24.58 0.00 0.00 2.77
3320 4256 9.630098 AAAGTATTTTGATGTTTAGAGTGCATG 57.370 29.630 0.00 0.00 31.62 4.06
3333 4271 9.166173 TGGTGATCAGAGTAAAGTATTTTGATG 57.834 33.333 0.00 0.00 40.09 3.07
3338 4276 8.328758 TGGAATGGTGATCAGAGTAAAGTATTT 58.671 33.333 0.00 0.00 43.42 1.40
3351 4289 7.616528 TCTTATGATACTGGAATGGTGATCA 57.383 36.000 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.