Multiple sequence alignment - TraesCS7D01G421600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G421600 chr7D 100.000 3452 0 0 1 3452 540856852 540853401 0.000000e+00 6375.0
1 TraesCS7D01G421600 chr7B 91.794 3217 155 43 293 3452 584315550 584312386 0.000000e+00 4377.0
2 TraesCS7D01G421600 chr7B 89.535 86 9 0 16 101 584315704 584315619 3.640000e-20 110.0
3 TraesCS7D01G421600 chr7A 96.585 2606 72 7 860 3452 623459300 623456699 0.000000e+00 4303.0
4 TraesCS7D01G421600 chr7A 96.970 66 2 0 217 282 211364372 211364307 1.010000e-20 111.0
5 TraesCS7D01G421600 chr1B 82.550 149 8 5 134 282 600727785 600727655 7.830000e-22 115.0
6 TraesCS7D01G421600 chr3D 96.970 66 2 0 217 282 501886045 501886110 1.010000e-20 111.0
7 TraesCS7D01G421600 chrUn 96.923 65 2 0 217 281 171008341 171008405 3.640000e-20 110.0
8 TraesCS7D01G421600 chrUn 96.923 65 2 0 217 281 432742409 432742473 3.640000e-20 110.0
9 TraesCS7D01G421600 chrUn 100.000 41 0 0 134 174 171008298 171008338 3.690000e-10 76.8
10 TraesCS7D01G421600 chrUn 100.000 41 0 0 134 174 432742366 432742406 3.690000e-10 76.8
11 TraesCS7D01G421600 chr6D 96.923 65 2 0 217 281 57938994 57938930 3.640000e-20 110.0
12 TraesCS7D01G421600 chr6D 100.000 41 0 0 134 174 57939037 57938997 3.690000e-10 76.8
13 TraesCS7D01G421600 chr4D 96.923 65 2 0 217 281 123401574 123401638 3.640000e-20 110.0
14 TraesCS7D01G421600 chr4D 100.000 41 0 0 134 174 123401531 123401571 3.690000e-10 76.8
15 TraesCS7D01G421600 chr4D 100.000 41 0 0 134 174 134963025 134963065 3.690000e-10 76.8
16 TraesCS7D01G421600 chr1D 96.923 65 2 0 217 281 212444662 212444598 3.640000e-20 110.0
17 TraesCS7D01G421600 chr1D 100.000 41 0 0 134 174 212444705 212444665 3.690000e-10 76.8
18 TraesCS7D01G421600 chr1D 100.000 41 0 0 134 174 275786577 275786537 3.690000e-10 76.8
19 TraesCS7D01G421600 chr1A 96.923 65 2 0 217 281 94663886 94663822 3.640000e-20 110.0
20 TraesCS7D01G421600 chr1A 100.000 41 0 0 134 174 94580907 94580947 3.690000e-10 76.8
21 TraesCS7D01G421600 chr1A 100.000 41 0 0 134 174 94663929 94663889 3.690000e-10 76.8
22 TraesCS7D01G421600 chr3B 94.030 67 4 0 216 282 368806672 368806606 6.100000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G421600 chr7D 540853401 540856852 3451 True 6375.0 6375 100.0000 1 3452 1 chr7D.!!$R1 3451
1 TraesCS7D01G421600 chr7B 584312386 584315704 3318 True 2243.5 4377 90.6645 16 3452 2 chr7B.!!$R1 3436
2 TraesCS7D01G421600 chr7A 623456699 623459300 2601 True 4303.0 4303 96.5850 860 3452 1 chr7A.!!$R2 2592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 497 0.033109 AACAAATAGGAGCAGGGCCC 60.033 55.0 16.46 16.46 0.0 5.80 F
491 500 0.033109 AAATAGGAGCAGGGCCCAAC 60.033 55.0 27.56 16.07 0.0 3.77 F
1827 1927 0.671796 TCACCACGCTGATATACGGG 59.328 55.0 0.00 0.00 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 1960 1.067142 TCCATTTCGTCGAACAGGAGG 60.067 52.381 18.72 11.71 0.00 4.30 R
2322 2422 1.244019 AAACCCTGAATGCACGCTCC 61.244 55.000 0.00 0.00 0.00 4.70 R
2942 3042 3.067106 GAGAAGAAAACTCATGTCGCCA 58.933 45.455 0.00 0.00 34.87 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 0.532573 CCGTGTACTCTGCCACATCT 59.467 55.000 0.00 0.00 0.00 2.90
60 61 5.121105 TCTGCCACATCTGTTGAAGATATG 58.879 41.667 0.00 0.00 44.24 1.78
63 64 3.567164 CCACATCTGTTGAAGATATGCCC 59.433 47.826 0.00 0.00 44.24 5.36
66 67 4.079558 ACATCTGTTGAAGATATGCCCCTT 60.080 41.667 0.00 0.00 44.24 3.95
67 68 4.156455 TCTGTTGAAGATATGCCCCTTC 57.844 45.455 0.00 0.00 39.26 3.46
96 97 6.087555 CGATTATGTTGTTGAAGAAAAACCCG 59.912 38.462 0.00 0.00 0.00 5.28
101 102 5.165676 GTTGTTGAAGAAAAACCCGTTCTT 58.834 37.500 0.00 0.00 45.72 2.52
103 104 5.404096 TGTTGAAGAAAAACCCGTTCTTTC 58.596 37.500 1.29 6.93 43.65 2.62
104 105 4.281525 TGAAGAAAAACCCGTTCTTTCG 57.718 40.909 1.29 0.00 43.65 3.46
105 106 2.768833 AGAAAAACCCGTTCTTTCGC 57.231 45.000 8.34 0.00 34.85 4.70
106 107 2.018515 AGAAAAACCCGTTCTTTCGCA 58.981 42.857 0.00 0.00 34.85 5.10
107 108 2.032924 AGAAAAACCCGTTCTTTCGCAG 59.967 45.455 0.00 0.00 34.85 5.18
110 111 1.507141 AACCCGTTCTTTCGCAGCTG 61.507 55.000 10.11 10.11 0.00 4.24
112 113 1.493311 CCGTTCTTTCGCAGCTGAC 59.507 57.895 20.43 8.06 0.00 3.51
113 114 0.946221 CCGTTCTTTCGCAGCTGACT 60.946 55.000 20.43 0.00 0.00 3.41
131 132 8.579682 AGCTGACTGAAAATACAATTTTTGAC 57.420 30.769 0.00 0.00 0.00 3.18
134 135 9.299963 CTGACTGAAAATACAATTTTTGACACA 57.700 29.630 0.00 0.00 0.00 3.72
135 136 9.645059 TGACTGAAAATACAATTTTTGACACAA 57.355 25.926 0.00 0.00 0.00 3.33
140 141 9.914923 GAAAATACAATTTTTGACACAAGTTCC 57.085 29.630 0.00 0.00 0.00 3.62
141 142 9.442047 AAAATACAATTTTTGACACAAGTTCCA 57.558 25.926 0.00 0.00 0.00 3.53
142 143 9.612066 AAATACAATTTTTGACACAAGTTCCAT 57.388 25.926 0.00 0.00 0.00 3.41
143 144 9.612066 AATACAATTTTTGACACAAGTTCCATT 57.388 25.926 0.00 0.00 0.00 3.16
144 145 7.920160 ACAATTTTTGACACAAGTTCCATTT 57.080 28.000 0.00 0.00 0.00 2.32
145 146 7.973601 ACAATTTTTGACACAAGTTCCATTTC 58.026 30.769 0.00 0.00 0.00 2.17
148 149 7.593875 TTTTTGACACAAGTTCCATTTCAAG 57.406 32.000 0.00 0.00 0.00 3.02
149 150 4.916983 TGACACAAGTTCCATTTCAAGG 57.083 40.909 0.00 0.00 0.00 3.61
150 151 3.636300 TGACACAAGTTCCATTTCAAGGG 59.364 43.478 0.00 0.00 0.00 3.95
151 152 3.888930 GACACAAGTTCCATTTCAAGGGA 59.111 43.478 0.00 0.00 37.04 4.20
152 153 3.891366 ACACAAGTTCCATTTCAAGGGAG 59.109 43.478 0.00 0.00 40.36 4.30
153 154 3.256631 CACAAGTTCCATTTCAAGGGAGG 59.743 47.826 0.00 0.00 40.36 4.30
154 155 3.140144 ACAAGTTCCATTTCAAGGGAGGA 59.860 43.478 0.00 0.00 40.36 3.71
155 156 3.441500 AGTTCCATTTCAAGGGAGGAC 57.558 47.619 0.00 0.00 40.36 3.85
156 157 2.084546 GTTCCATTTCAAGGGAGGACG 58.915 52.381 0.00 0.00 40.36 4.79
158 159 1.278127 TCCATTTCAAGGGAGGACGAC 59.722 52.381 0.00 0.00 33.26 4.34
159 160 1.359848 CATTTCAAGGGAGGACGACG 58.640 55.000 0.00 0.00 0.00 5.12
160 161 0.974383 ATTTCAAGGGAGGACGACGT 59.026 50.000 0.00 0.00 0.00 4.34
163 164 0.962356 TCAAGGGAGGACGACGTACC 60.962 60.000 6.59 7.45 35.31 3.34
165 166 0.324091 AAGGGAGGACGACGTACCAT 60.324 55.000 6.59 3.17 37.36 3.55
166 167 1.035932 AGGGAGGACGACGTACCATG 61.036 60.000 6.59 0.00 37.36 3.66
167 168 1.033746 GGGAGGACGACGTACCATGA 61.034 60.000 6.59 0.00 35.20 3.07
168 169 1.030457 GGAGGACGACGTACCATGAT 58.970 55.000 6.59 0.00 0.00 2.45
169 170 2.224606 GGAGGACGACGTACCATGATA 58.775 52.381 6.59 0.00 0.00 2.15
170 171 2.031333 GGAGGACGACGTACCATGATAC 60.031 54.545 6.59 0.00 0.00 2.24
171 172 2.877168 GAGGACGACGTACCATGATACT 59.123 50.000 6.59 0.00 0.00 2.12
172 173 3.285484 AGGACGACGTACCATGATACTT 58.715 45.455 6.59 0.00 0.00 2.24
173 174 3.698040 AGGACGACGTACCATGATACTTT 59.302 43.478 6.59 0.00 0.00 2.66
174 175 4.159135 AGGACGACGTACCATGATACTTTT 59.841 41.667 6.59 0.00 0.00 2.27
175 176 4.501921 GGACGACGTACCATGATACTTTTC 59.498 45.833 0.00 0.00 0.00 2.29
176 177 4.100529 ACGACGTACCATGATACTTTTCG 58.899 43.478 0.00 9.88 0.00 3.46
177 178 4.142622 ACGACGTACCATGATACTTTTCGA 60.143 41.667 15.74 0.00 0.00 3.71
178 179 4.974275 CGACGTACCATGATACTTTTCGAT 59.026 41.667 6.85 0.00 0.00 3.59
179 180 6.138088 CGACGTACCATGATACTTTTCGATA 58.862 40.000 6.85 0.00 0.00 2.92
180 181 6.085979 CGACGTACCATGATACTTTTCGATAC 59.914 42.308 6.85 0.00 0.00 2.24
181 182 6.211515 ACGTACCATGATACTTTTCGATACC 58.788 40.000 0.00 0.00 0.00 2.73
182 183 6.040166 ACGTACCATGATACTTTTCGATACCT 59.960 38.462 0.00 0.00 0.00 3.08
183 184 7.229306 ACGTACCATGATACTTTTCGATACCTA 59.771 37.037 0.00 0.00 0.00 3.08
184 185 8.077991 CGTACCATGATACTTTTCGATACCTAA 58.922 37.037 0.00 0.00 0.00 2.69
185 186 9.408069 GTACCATGATACTTTTCGATACCTAAG 57.592 37.037 0.00 0.00 0.00 2.18
186 187 8.019656 ACCATGATACTTTTCGATACCTAAGT 57.980 34.615 0.00 0.00 35.25 2.24
187 188 8.483758 ACCATGATACTTTTCGATACCTAAGTT 58.516 33.333 0.00 0.00 33.28 2.66
188 189 9.326413 CCATGATACTTTTCGATACCTAAGTTT 57.674 33.333 0.00 0.00 33.28 2.66
191 192 9.715121 TGATACTTTTCGATACCTAAGTTTTGT 57.285 29.630 0.00 0.00 33.28 2.83
192 193 9.968743 GATACTTTTCGATACCTAAGTTTTGTG 57.031 33.333 0.00 0.00 33.28 3.33
193 194 9.715121 ATACTTTTCGATACCTAAGTTTTGTGA 57.285 29.630 0.00 0.00 33.28 3.58
194 195 8.441312 ACTTTTCGATACCTAAGTTTTGTGAA 57.559 30.769 0.00 0.00 0.00 3.18
195 196 8.557029 ACTTTTCGATACCTAAGTTTTGTGAAG 58.443 33.333 0.00 0.00 0.00 3.02
196 197 6.476243 TTCGATACCTAAGTTTTGTGAAGC 57.524 37.500 0.00 0.00 0.00 3.86
197 198 4.933400 TCGATACCTAAGTTTTGTGAAGCC 59.067 41.667 0.00 0.00 0.00 4.35
198 199 4.094442 CGATACCTAAGTTTTGTGAAGCCC 59.906 45.833 0.00 0.00 0.00 5.19
199 200 3.595190 ACCTAAGTTTTGTGAAGCCCT 57.405 42.857 0.00 0.00 0.00 5.19
200 201 4.717279 ACCTAAGTTTTGTGAAGCCCTA 57.283 40.909 0.00 0.00 0.00 3.53
201 202 4.395625 ACCTAAGTTTTGTGAAGCCCTAC 58.604 43.478 0.00 0.00 0.00 3.18
202 203 4.104261 ACCTAAGTTTTGTGAAGCCCTACT 59.896 41.667 0.00 0.00 0.00 2.57
203 204 5.070685 CCTAAGTTTTGTGAAGCCCTACTT 58.929 41.667 0.00 0.00 42.98 2.24
204 205 5.535030 CCTAAGTTTTGTGAAGCCCTACTTT 59.465 40.000 0.00 0.00 39.29 2.66
205 206 5.932619 AAGTTTTGTGAAGCCCTACTTTT 57.067 34.783 0.00 0.00 39.29 2.27
206 207 5.515797 AGTTTTGTGAAGCCCTACTTTTC 57.484 39.130 0.00 0.00 39.29 2.29
207 208 4.036380 AGTTTTGTGAAGCCCTACTTTTCG 59.964 41.667 0.00 0.00 39.29 3.46
208 209 3.478857 TTGTGAAGCCCTACTTTTCGA 57.521 42.857 0.00 0.00 39.29 3.71
209 210 3.040147 TGTGAAGCCCTACTTTTCGAG 57.960 47.619 0.00 0.00 39.29 4.04
210 211 2.631062 TGTGAAGCCCTACTTTTCGAGA 59.369 45.455 0.00 0.00 39.29 4.04
211 212 2.994578 GTGAAGCCCTACTTTTCGAGAC 59.005 50.000 0.00 0.00 39.29 3.36
212 213 2.028385 TGAAGCCCTACTTTTCGAGACC 60.028 50.000 0.00 0.00 39.29 3.85
213 214 1.640917 AGCCCTACTTTTCGAGACCA 58.359 50.000 0.00 0.00 0.00 4.02
214 215 1.975680 AGCCCTACTTTTCGAGACCAA 59.024 47.619 0.00 0.00 0.00 3.67
215 216 2.370849 AGCCCTACTTTTCGAGACCAAA 59.629 45.455 0.00 0.00 0.00 3.28
216 217 2.742589 GCCCTACTTTTCGAGACCAAAG 59.257 50.000 5.90 5.90 36.28 2.77
217 218 3.806157 GCCCTACTTTTCGAGACCAAAGT 60.806 47.826 15.24 15.24 43.91 2.66
218 219 4.386711 CCCTACTTTTCGAGACCAAAGTT 58.613 43.478 15.91 3.91 39.69 2.66
219 220 4.820173 CCCTACTTTTCGAGACCAAAGTTT 59.180 41.667 15.91 0.00 39.69 2.66
220 221 5.298527 CCCTACTTTTCGAGACCAAAGTTTT 59.701 40.000 15.91 0.00 39.69 2.43
221 222 6.199393 CCTACTTTTCGAGACCAAAGTTTTG 58.801 40.000 15.91 8.61 39.69 2.44
222 223 5.638596 ACTTTTCGAGACCAAAGTTTTGT 57.361 34.783 7.06 0.00 39.69 2.83
223 224 5.399013 ACTTTTCGAGACCAAAGTTTTGTG 58.601 37.500 7.06 0.00 39.69 3.33
224 225 5.182380 ACTTTTCGAGACCAAAGTTTTGTGA 59.818 36.000 7.06 0.00 39.69 3.58
225 226 5.630661 TTTCGAGACCAAAGTTTTGTGAA 57.369 34.783 0.00 0.00 36.45 3.18
226 227 4.875544 TCGAGACCAAAGTTTTGTGAAG 57.124 40.909 0.00 0.00 36.45 3.02
227 228 3.064820 TCGAGACCAAAGTTTTGTGAAGC 59.935 43.478 0.00 0.00 36.45 3.86
228 229 3.706698 GAGACCAAAGTTTTGTGAAGCC 58.293 45.455 0.00 0.00 36.45 4.35
229 230 2.430694 AGACCAAAGTTTTGTGAAGCCC 59.569 45.455 0.00 0.00 36.45 5.19
230 231 2.430694 GACCAAAGTTTTGTGAAGCCCT 59.569 45.455 0.00 0.00 36.45 5.19
231 232 2.168313 ACCAAAGTTTTGTGAAGCCCTG 59.832 45.455 4.12 0.00 36.45 4.45
232 233 2.204237 CAAAGTTTTGTGAAGCCCTGC 58.796 47.619 0.00 0.00 33.59 4.85
233 234 1.780503 AAGTTTTGTGAAGCCCTGCT 58.219 45.000 0.00 0.00 42.56 4.24
234 235 3.679639 CAAAGTTTTGTGAAGCCCTGCTT 60.680 43.478 0.07 0.07 41.21 3.91
235 236 5.157569 CAAAGTTTTGTGAAGCCCTGCTTT 61.158 41.667 2.46 0.00 39.91 3.51
236 237 7.146569 CAAAGTTTTGTGAAGCCCTGCTTTG 62.147 44.000 2.46 0.00 39.91 2.77
242 243 3.913107 AGCCCTGCTTTGGTCTCT 58.087 55.556 0.00 0.00 33.89 3.10
243 244 1.377994 AGCCCTGCTTTGGTCTCTG 59.622 57.895 0.00 0.00 33.89 3.35
244 245 1.676967 GCCCTGCTTTGGTCTCTGG 60.677 63.158 0.00 0.00 0.00 3.86
245 246 1.763770 CCCTGCTTTGGTCTCTGGT 59.236 57.895 0.00 0.00 0.00 4.00
246 247 0.111253 CCCTGCTTTGGTCTCTGGTT 59.889 55.000 0.00 0.00 0.00 3.67
247 248 1.479389 CCCTGCTTTGGTCTCTGGTTT 60.479 52.381 0.00 0.00 0.00 3.27
248 249 1.610522 CCTGCTTTGGTCTCTGGTTTG 59.389 52.381 0.00 0.00 0.00 2.93
249 250 2.575532 CTGCTTTGGTCTCTGGTTTGA 58.424 47.619 0.00 0.00 0.00 2.69
250 251 3.152341 CTGCTTTGGTCTCTGGTTTGAT 58.848 45.455 0.00 0.00 0.00 2.57
251 252 2.886523 TGCTTTGGTCTCTGGTTTGATG 59.113 45.455 0.00 0.00 0.00 3.07
252 253 2.229784 GCTTTGGTCTCTGGTTTGATGG 59.770 50.000 0.00 0.00 0.00 3.51
253 254 3.490348 CTTTGGTCTCTGGTTTGATGGT 58.510 45.455 0.00 0.00 0.00 3.55
254 255 3.593442 TTGGTCTCTGGTTTGATGGTT 57.407 42.857 0.00 0.00 0.00 3.67
255 256 2.862541 TGGTCTCTGGTTTGATGGTTG 58.137 47.619 0.00 0.00 0.00 3.77
256 257 2.174639 TGGTCTCTGGTTTGATGGTTGT 59.825 45.455 0.00 0.00 0.00 3.32
257 258 3.392947 TGGTCTCTGGTTTGATGGTTGTA 59.607 43.478 0.00 0.00 0.00 2.41
258 259 3.751698 GGTCTCTGGTTTGATGGTTGTAC 59.248 47.826 0.00 0.00 0.00 2.90
259 260 3.432252 GTCTCTGGTTTGATGGTTGTACG 59.568 47.826 0.00 0.00 0.00 3.67
260 261 3.070446 TCTCTGGTTTGATGGTTGTACGT 59.930 43.478 0.00 0.00 0.00 3.57
261 262 3.135225 TCTGGTTTGATGGTTGTACGTG 58.865 45.455 0.00 0.00 0.00 4.49
262 263 1.604755 TGGTTTGATGGTTGTACGTGC 59.395 47.619 0.00 0.00 0.00 5.34
263 264 1.877443 GGTTTGATGGTTGTACGTGCT 59.123 47.619 4.97 0.00 0.00 4.40
264 265 3.068560 GGTTTGATGGTTGTACGTGCTA 58.931 45.455 4.97 0.00 0.00 3.49
265 266 3.499157 GGTTTGATGGTTGTACGTGCTAA 59.501 43.478 4.97 0.00 0.00 3.09
266 267 4.023878 GGTTTGATGGTTGTACGTGCTAAA 60.024 41.667 4.97 0.00 0.00 1.85
267 268 5.505985 GGTTTGATGGTTGTACGTGCTAAAA 60.506 40.000 4.97 0.00 0.00 1.52
268 269 5.752892 TTGATGGTTGTACGTGCTAAAAA 57.247 34.783 4.97 0.00 0.00 1.94
269 270 5.950758 TGATGGTTGTACGTGCTAAAAAT 57.049 34.783 4.97 0.00 0.00 1.82
270 271 5.933790 TGATGGTTGTACGTGCTAAAAATC 58.066 37.500 4.97 2.71 0.00 2.17
271 272 4.752661 TGGTTGTACGTGCTAAAAATCC 57.247 40.909 4.97 0.00 0.00 3.01
272 273 3.186817 TGGTTGTACGTGCTAAAAATCCG 59.813 43.478 4.97 0.00 0.00 4.18
273 274 3.425227 GGTTGTACGTGCTAAAAATCCGG 60.425 47.826 4.97 0.00 0.00 5.14
274 275 3.042871 TGTACGTGCTAAAAATCCGGT 57.957 42.857 0.00 0.00 0.00 5.28
275 276 4.185467 TGTACGTGCTAAAAATCCGGTA 57.815 40.909 0.00 0.00 0.00 4.02
276 277 3.925913 TGTACGTGCTAAAAATCCGGTAC 59.074 43.478 0.00 0.00 0.00 3.34
277 278 3.042871 ACGTGCTAAAAATCCGGTACA 57.957 42.857 0.00 0.00 0.00 2.90
278 279 3.602483 ACGTGCTAAAAATCCGGTACAT 58.398 40.909 0.00 0.00 0.00 2.29
279 280 4.004982 ACGTGCTAAAAATCCGGTACATT 58.995 39.130 0.00 0.00 0.00 2.71
280 281 4.093850 ACGTGCTAAAAATCCGGTACATTC 59.906 41.667 0.00 0.00 0.00 2.67
281 282 4.331717 CGTGCTAAAAATCCGGTACATTCT 59.668 41.667 0.00 0.00 0.00 2.40
282 283 5.501897 CGTGCTAAAAATCCGGTACATTCTC 60.502 44.000 0.00 0.00 0.00 2.87
283 284 4.879545 TGCTAAAAATCCGGTACATTCTCC 59.120 41.667 0.00 0.00 0.00 3.71
284 285 4.275196 GCTAAAAATCCGGTACATTCTCCC 59.725 45.833 0.00 0.00 0.00 4.30
285 286 4.310022 AAAAATCCGGTACATTCTCCCA 57.690 40.909 0.00 0.00 0.00 4.37
286 287 4.519906 AAAATCCGGTACATTCTCCCAT 57.480 40.909 0.00 0.00 0.00 4.00
287 288 3.771577 AATCCGGTACATTCTCCCATC 57.228 47.619 0.00 0.00 0.00 3.51
288 289 1.420430 TCCGGTACATTCTCCCATCC 58.580 55.000 0.00 0.00 0.00 3.51
289 290 1.062428 TCCGGTACATTCTCCCATCCT 60.062 52.381 0.00 0.00 0.00 3.24
290 291 1.070758 CCGGTACATTCTCCCATCCTG 59.929 57.143 0.00 0.00 0.00 3.86
291 292 2.039418 CGGTACATTCTCCCATCCTGA 58.961 52.381 0.00 0.00 0.00 3.86
298 299 5.138276 ACATTCTCCCATCCTGAAATGATG 58.862 41.667 0.00 0.00 38.50 3.07
332 333 2.575694 AACAAATTGAGCACGCACAA 57.424 40.000 0.00 4.38 0.00 3.33
333 334 1.838913 ACAAATTGAGCACGCACAAC 58.161 45.000 3.99 0.00 30.10 3.32
334 335 1.405105 ACAAATTGAGCACGCACAACT 59.595 42.857 3.99 0.00 30.10 3.16
335 336 2.159254 ACAAATTGAGCACGCACAACTT 60.159 40.909 3.99 0.00 30.10 2.66
336 337 2.405892 AATTGAGCACGCACAACTTC 57.594 45.000 3.99 0.00 30.10 3.01
337 338 1.308047 ATTGAGCACGCACAACTTCA 58.692 45.000 3.99 0.00 30.10 3.02
355 356 8.206189 ACAACTTCAATTCAATTTCATTCCAGT 58.794 29.630 0.00 0.00 0.00 4.00
416 425 4.901627 GCAACACGACTCAAGCAC 57.098 55.556 0.00 0.00 0.00 4.40
417 426 1.279840 GCAACACGACTCAAGCACC 59.720 57.895 0.00 0.00 0.00 5.01
418 427 1.436195 GCAACACGACTCAAGCACCA 61.436 55.000 0.00 0.00 0.00 4.17
419 428 1.013596 CAACACGACTCAAGCACCAA 58.986 50.000 0.00 0.00 0.00 3.67
420 429 1.400142 CAACACGACTCAAGCACCAAA 59.600 47.619 0.00 0.00 0.00 3.28
421 430 1.745232 ACACGACTCAAGCACCAAAA 58.255 45.000 0.00 0.00 0.00 2.44
422 431 1.670811 ACACGACTCAAGCACCAAAAG 59.329 47.619 0.00 0.00 0.00 2.27
423 432 0.663153 ACGACTCAAGCACCAAAAGC 59.337 50.000 0.00 0.00 0.00 3.51
424 433 0.662619 CGACTCAAGCACCAAAAGCA 59.337 50.000 0.00 0.00 0.00 3.91
425 434 1.597937 CGACTCAAGCACCAAAAGCAC 60.598 52.381 0.00 0.00 0.00 4.40
426 435 1.405105 GACTCAAGCACCAAAAGCACA 59.595 47.619 0.00 0.00 0.00 4.57
427 436 1.134946 ACTCAAGCACCAAAAGCACAC 59.865 47.619 0.00 0.00 0.00 3.82
428 437 1.134753 CTCAAGCACCAAAAGCACACA 59.865 47.619 0.00 0.00 0.00 3.72
429 438 1.135141 TCAAGCACCAAAAGCACACAC 60.135 47.619 0.00 0.00 0.00 3.82
430 439 0.894141 AAGCACCAAAAGCACACACA 59.106 45.000 0.00 0.00 0.00 3.72
431 440 0.894141 AGCACCAAAAGCACACACAA 59.106 45.000 0.00 0.00 0.00 3.33
432 441 0.998669 GCACCAAAAGCACACACAAC 59.001 50.000 0.00 0.00 0.00 3.32
433 442 1.671261 GCACCAAAAGCACACACAACA 60.671 47.619 0.00 0.00 0.00 3.33
434 443 2.261345 CACCAAAAGCACACACAACAG 58.739 47.619 0.00 0.00 0.00 3.16
435 444 1.280066 CCAAAAGCACACACAACAGC 58.720 50.000 0.00 0.00 0.00 4.40
436 445 1.403914 CCAAAAGCACACACAACAGCA 60.404 47.619 0.00 0.00 0.00 4.41
437 446 2.542597 CAAAAGCACACACAACAGCAT 58.457 42.857 0.00 0.00 0.00 3.79
438 447 2.931325 CAAAAGCACACACAACAGCATT 59.069 40.909 0.00 0.00 0.00 3.56
439 448 2.965572 AAGCACACACAACAGCATTT 57.034 40.000 0.00 0.00 0.00 2.32
440 449 2.497107 AGCACACACAACAGCATTTC 57.503 45.000 0.00 0.00 0.00 2.17
441 450 1.067516 AGCACACACAACAGCATTTCC 59.932 47.619 0.00 0.00 0.00 3.13
442 451 1.757574 CACACACAACAGCATTTCCG 58.242 50.000 0.00 0.00 0.00 4.30
443 452 0.667993 ACACACAACAGCATTTCCGG 59.332 50.000 0.00 0.00 0.00 5.14
444 453 0.667993 CACACAACAGCATTTCCGGT 59.332 50.000 0.00 0.00 0.00 5.28
445 454 1.066908 CACACAACAGCATTTCCGGTT 59.933 47.619 0.00 0.00 0.00 4.44
446 455 1.754226 ACACAACAGCATTTCCGGTTT 59.246 42.857 0.00 0.00 0.00 3.27
447 456 2.952978 ACACAACAGCATTTCCGGTTTA 59.047 40.909 0.00 0.00 0.00 2.01
448 457 3.381908 ACACAACAGCATTTCCGGTTTAA 59.618 39.130 0.00 0.00 0.00 1.52
449 458 4.142138 ACACAACAGCATTTCCGGTTTAAA 60.142 37.500 0.00 0.00 0.00 1.52
450 459 4.987912 CACAACAGCATTTCCGGTTTAAAT 59.012 37.500 0.00 0.00 0.00 1.40
451 460 5.118510 CACAACAGCATTTCCGGTTTAAATC 59.881 40.000 0.00 0.00 0.00 2.17
452 461 5.221342 ACAACAGCATTTCCGGTTTAAATCA 60.221 36.000 0.00 0.00 0.00 2.57
453 462 5.059404 ACAGCATTTCCGGTTTAAATCAG 57.941 39.130 0.00 0.00 0.00 2.90
454 463 3.859386 CAGCATTTCCGGTTTAAATCAGC 59.141 43.478 0.00 1.49 0.00 4.26
455 464 3.763897 AGCATTTCCGGTTTAAATCAGCT 59.236 39.130 0.00 3.87 0.00 4.24
462 471 2.423185 CGGTTTAAATCAGCTCATGGCA 59.577 45.455 8.58 0.00 44.79 4.92
466 475 2.154567 AAATCAGCTCATGGCATGGT 57.845 45.000 26.15 9.60 44.79 3.55
468 477 3.301794 AATCAGCTCATGGCATGGTAA 57.698 42.857 26.15 7.39 44.79 2.85
477 486 5.750067 GCTCATGGCATGGTAAAACAAATAG 59.250 40.000 26.15 12.80 41.35 1.73
486 495 3.130516 GGTAAAACAAATAGGAGCAGGGC 59.869 47.826 0.00 0.00 0.00 5.19
487 496 1.852633 AAACAAATAGGAGCAGGGCC 58.147 50.000 0.00 0.00 0.00 5.80
488 497 0.033109 AACAAATAGGAGCAGGGCCC 60.033 55.000 16.46 16.46 0.00 5.80
489 498 1.214305 ACAAATAGGAGCAGGGCCCA 61.214 55.000 27.56 0.00 0.00 5.36
490 499 0.033208 CAAATAGGAGCAGGGCCCAA 60.033 55.000 27.56 0.00 0.00 4.12
491 500 0.033109 AAATAGGAGCAGGGCCCAAC 60.033 55.000 27.56 16.07 0.00 3.77
495 504 2.124529 GAGCAGGGCCCAACTAGC 60.125 66.667 27.56 19.03 0.00 3.42
522 576 1.023513 CGCCTGCTTCCTTTCCAGAG 61.024 60.000 0.00 0.00 0.00 3.35
563 617 3.389206 GCTTCGCGTCCTCATGAC 58.611 61.111 5.77 0.00 40.81 3.06
574 629 2.434185 TCATGACAAGACCGCCGC 60.434 61.111 0.00 0.00 0.00 6.53
650 720 2.657296 CGTTGAGGTGCGTGTCGT 60.657 61.111 0.00 0.00 0.00 4.34
651 721 2.645510 CGTTGAGGTGCGTGTCGTC 61.646 63.158 0.00 0.00 0.00 4.20
652 722 2.354188 TTGAGGTGCGTGTCGTCG 60.354 61.111 0.00 0.00 0.00 5.12
653 723 2.836793 TTGAGGTGCGTGTCGTCGA 61.837 57.895 0.00 0.00 0.00 4.20
654 724 2.137425 TTGAGGTGCGTGTCGTCGAT 62.137 55.000 0.00 0.00 0.00 3.59
655 725 2.126463 AGGTGCGTGTCGTCGATG 60.126 61.111 0.00 0.00 0.00 3.84
656 726 3.179265 GGTGCGTGTCGTCGATGG 61.179 66.667 4.48 0.00 0.00 3.51
657 727 3.179265 GTGCGTGTCGTCGATGGG 61.179 66.667 4.48 0.00 0.00 4.00
658 728 4.429212 TGCGTGTCGTCGATGGGG 62.429 66.667 4.48 0.00 0.00 4.96
663 733 4.446413 GTCGTCGATGGGGGCGTT 62.446 66.667 4.48 0.00 0.00 4.84
664 734 4.444838 TCGTCGATGGGGGCGTTG 62.445 66.667 4.48 0.00 0.00 4.10
665 735 4.444838 CGTCGATGGGGGCGTTGA 62.445 66.667 0.00 0.00 0.00 3.18
666 736 2.511600 GTCGATGGGGGCGTTGAG 60.512 66.667 0.00 0.00 0.00 3.02
667 737 3.781307 TCGATGGGGGCGTTGAGG 61.781 66.667 0.00 0.00 0.00 3.86
668 738 4.096003 CGATGGGGGCGTTGAGGT 62.096 66.667 0.00 0.00 0.00 3.85
669 739 2.438434 GATGGGGGCGTTGAGGTG 60.438 66.667 0.00 0.00 0.00 4.00
670 740 3.256960 ATGGGGGCGTTGAGGTGT 61.257 61.111 0.00 0.00 0.00 4.16
671 741 3.567579 ATGGGGGCGTTGAGGTGTG 62.568 63.158 0.00 0.00 0.00 3.82
672 742 4.265056 GGGGGCGTTGAGGTGTGT 62.265 66.667 0.00 0.00 0.00 3.72
673 743 2.978010 GGGGCGTTGAGGTGTGTG 60.978 66.667 0.00 0.00 0.00 3.82
674 744 2.203153 GGGCGTTGAGGTGTGTGT 60.203 61.111 0.00 0.00 0.00 3.72
675 745 2.251642 GGGCGTTGAGGTGTGTGTC 61.252 63.158 0.00 0.00 0.00 3.67
676 746 2.594962 GGCGTTGAGGTGTGTGTCG 61.595 63.158 0.00 0.00 0.00 4.35
679 749 1.548973 CGTTGAGGTGTGTGTCGAGC 61.549 60.000 0.00 0.00 0.00 5.03
699 769 3.934962 GGAGGCCGCCATCTCCTC 61.935 72.222 22.24 0.00 44.54 3.71
700 770 3.934962 GAGGCCGCCATCTCCTCC 61.935 72.222 13.15 0.00 40.29 4.30
708 796 2.491022 CCATCTCCTCCCGGACGAC 61.491 68.421 0.73 0.00 34.92 4.34
739 827 2.415010 CGCCTGATGGAGACGAGG 59.585 66.667 0.00 0.00 34.95 4.63
749 837 2.577700 TGGAGACGAGGATAAGAGAGC 58.422 52.381 0.00 0.00 0.00 4.09
766 854 2.517798 GCGGGGAGGGGGAATCTAC 61.518 68.421 0.00 0.00 0.00 2.59
806 894 2.537792 TACTTCAGCGCCCTCGTTCG 62.538 60.000 2.29 0.00 38.14 3.95
815 903 2.049433 CCTCGTTCGCGTGGTTCT 60.049 61.111 5.77 0.00 45.90 3.01
816 904 2.087009 CCTCGTTCGCGTGGTTCTC 61.087 63.158 5.77 0.00 45.90 2.87
817 905 2.426183 CTCGTTCGCGTGGTTCTCG 61.426 63.158 5.77 2.22 42.11 4.04
818 906 2.728383 CGTTCGCGTGGTTCTCGT 60.728 61.111 5.77 0.00 35.57 4.18
819 907 2.297912 CGTTCGCGTGGTTCTCGTT 61.298 57.895 5.77 0.00 35.57 3.85
820 908 1.485943 GTTCGCGTGGTTCTCGTTC 59.514 57.895 5.77 0.00 0.00 3.95
821 909 1.066093 TTCGCGTGGTTCTCGTTCA 59.934 52.632 5.77 0.00 0.00 3.18
822 910 0.937699 TTCGCGTGGTTCTCGTTCAG 60.938 55.000 5.77 0.00 0.00 3.02
844 932 1.073216 CGAACGACTGCTCGATGCTT 61.073 55.000 1.98 0.00 43.06 3.91
865 953 4.783621 TGGCAGGAGACATGCGCC 62.784 66.667 4.18 0.00 44.80 6.53
956 1050 7.872483 GTCAACCAGTTATCATTTCCATTTGTT 59.128 33.333 0.00 0.00 0.00 2.83
1179 1279 2.063378 CCTCCTGCTCTCCCACTCC 61.063 68.421 0.00 0.00 0.00 3.85
1236 1336 2.610859 GAGCTCCCCCACTTCCCA 60.611 66.667 0.87 0.00 0.00 4.37
1260 1360 2.364448 GAGAGCTCCCTCCCCGTT 60.364 66.667 10.93 0.00 38.96 4.44
1746 1846 3.160269 CAAGAAAGGCAGGTTTCTGGAT 58.840 45.455 8.28 0.00 44.38 3.41
1827 1927 0.671796 TCACCACGCTGATATACGGG 59.328 55.000 0.00 0.00 0.00 5.28
1869 1969 3.414700 CGTGCACGCCTCCTGTTC 61.415 66.667 28.16 0.00 0.00 3.18
1890 1990 2.486966 GAAATGGAGCAGTGCGGC 59.513 61.111 10.00 5.95 0.00 6.53
1992 2092 0.897621 TGAGCGAGATGGAGCAGAAA 59.102 50.000 0.00 0.00 35.48 2.52
2214 2314 1.646912 TCGGGAAAGGATGTGTACCA 58.353 50.000 0.00 0.00 0.00 3.25
2226 2326 0.937304 GTGTACCACATAGGCATGCG 59.063 55.000 12.44 0.00 43.14 4.73
2244 2344 2.224426 TGCGTTGGATGTTCTGGTTACT 60.224 45.455 0.00 0.00 0.00 2.24
2322 2422 0.469917 AGATGGGAATGGCACCTACG 59.530 55.000 0.00 0.00 0.00 3.51
2415 2515 2.675889 GCAAATGATGAAGGCAACCCAG 60.676 50.000 0.00 0.00 37.17 4.45
2496 2596 9.337396 GGTCCCTTTTGAAAAGAAACATATTTT 57.663 29.630 18.59 0.00 0.00 1.82
2711 2811 4.147449 GCCCCAAGCCGCCAATTC 62.147 66.667 0.00 0.00 34.35 2.17
2905 3005 5.184096 TGTTGTCACTGTTGTAACAATGGTT 59.816 36.000 6.39 0.00 36.83 3.67
2989 3089 5.221106 CCCAGCCACATAATTCTTGTACATG 60.221 44.000 0.00 0.00 0.00 3.21
2995 3095 7.250569 CCACATAATTCTTGTACATGACAACC 58.749 38.462 10.76 0.00 43.30 3.77
3094 3200 6.199719 CACAAAGCTGAATTTTGTCTTCCTTC 59.800 38.462 0.00 0.00 44.50 3.46
3160 3276 4.938080 TCGATGGTATTTTCTCTCTCAGC 58.062 43.478 0.00 0.00 0.00 4.26
3372 3489 9.771915 AAAAATGCATTTTTGTTGAACTAACTG 57.228 25.926 36.98 0.00 45.31 3.16
3373 3490 8.491331 AAATGCATTTTTGTTGAACTAACTGT 57.509 26.923 18.99 0.00 40.05 3.55
3385 3502 6.659745 TGAACTAACTGTCTAGGCTGTAAA 57.340 37.500 7.34 0.00 0.00 2.01
3395 3512 9.220767 ACTGTCTAGGCTGTAAAAGAAATTTAG 57.779 33.333 4.90 0.00 34.21 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 7.064134 CAGAGTACACGGCACATATCTTAAAAA 59.936 37.037 0.00 0.00 0.00 1.94
23 24 0.174845 GGCAGAGTACACGGCACATA 59.825 55.000 16.13 0.00 33.04 2.29
29 30 0.532573 AGATGTGGCAGAGTACACGG 59.467 55.000 0.00 0.00 40.39 4.94
48 49 3.889815 CAGAAGGGGCATATCTTCAACA 58.110 45.455 0.00 0.00 41.16 3.33
57 58 1.429930 TAATCGGCAGAAGGGGCATA 58.570 50.000 0.00 0.00 0.00 3.14
60 61 0.179018 ACATAATCGGCAGAAGGGGC 60.179 55.000 0.00 0.00 0.00 5.80
63 64 3.689161 TCAACAACATAATCGGCAGAAGG 59.311 43.478 0.00 0.00 0.00 3.46
66 67 4.574892 TCTTCAACAACATAATCGGCAGA 58.425 39.130 0.00 0.00 0.00 4.26
67 68 4.944962 TCTTCAACAACATAATCGGCAG 57.055 40.909 0.00 0.00 0.00 4.85
96 97 1.502231 TCAGTCAGCTGCGAAAGAAC 58.498 50.000 9.47 0.00 42.29 3.01
101 102 3.398406 TGTATTTTCAGTCAGCTGCGAA 58.602 40.909 9.47 8.83 42.29 4.70
103 104 3.811722 TTGTATTTTCAGTCAGCTGCG 57.188 42.857 9.47 0.00 42.29 5.18
104 105 7.169645 TCAAAAATTGTATTTTCAGTCAGCTGC 59.830 33.333 9.47 4.26 42.29 5.25
105 106 8.482429 GTCAAAAATTGTATTTTCAGTCAGCTG 58.518 33.333 7.63 7.63 43.87 4.24
106 107 8.196771 TGTCAAAAATTGTATTTTCAGTCAGCT 58.803 29.630 0.00 0.00 30.31 4.24
107 108 8.268738 GTGTCAAAAATTGTATTTTCAGTCAGC 58.731 33.333 0.00 0.00 30.31 4.26
114 115 9.914923 GGAACTTGTGTCAAAAATTGTATTTTC 57.085 29.630 0.00 0.00 30.31 2.29
115 116 9.442047 TGGAACTTGTGTCAAAAATTGTATTTT 57.558 25.926 0.00 0.00 32.89 1.82
116 117 9.612066 ATGGAACTTGTGTCAAAAATTGTATTT 57.388 25.926 0.00 0.00 0.00 1.40
117 118 9.612066 AATGGAACTTGTGTCAAAAATTGTATT 57.388 25.926 0.00 0.00 0.00 1.89
118 119 9.612066 AAATGGAACTTGTGTCAAAAATTGTAT 57.388 25.926 0.00 0.00 0.00 2.29
119 120 9.092876 GAAATGGAACTTGTGTCAAAAATTGTA 57.907 29.630 0.00 0.00 0.00 2.41
120 121 7.605691 TGAAATGGAACTTGTGTCAAAAATTGT 59.394 29.630 0.00 0.00 0.00 2.71
121 122 7.972527 TGAAATGGAACTTGTGTCAAAAATTG 58.027 30.769 0.00 0.00 0.00 2.32
122 123 8.558973 TTGAAATGGAACTTGTGTCAAAAATT 57.441 26.923 0.00 0.00 0.00 1.82
123 124 7.280652 CCTTGAAATGGAACTTGTGTCAAAAAT 59.719 33.333 0.00 0.00 31.60 1.82
124 125 6.593382 CCTTGAAATGGAACTTGTGTCAAAAA 59.407 34.615 0.00 0.00 31.60 1.94
125 126 6.105333 CCTTGAAATGGAACTTGTGTCAAAA 58.895 36.000 0.00 0.00 31.60 2.44
128 129 3.636300 CCCTTGAAATGGAACTTGTGTCA 59.364 43.478 0.00 0.00 31.60 3.58
129 130 3.888930 TCCCTTGAAATGGAACTTGTGTC 59.111 43.478 0.00 0.00 31.60 3.67
130 131 3.891366 CTCCCTTGAAATGGAACTTGTGT 59.109 43.478 0.00 0.00 31.60 3.72
131 132 3.256631 CCTCCCTTGAAATGGAACTTGTG 59.743 47.826 0.00 0.00 31.60 3.33
134 135 3.767711 GTCCTCCCTTGAAATGGAACTT 58.232 45.455 0.00 0.00 31.60 2.66
135 136 2.290323 CGTCCTCCCTTGAAATGGAACT 60.290 50.000 0.00 0.00 31.60 3.01
136 137 2.084546 CGTCCTCCCTTGAAATGGAAC 58.915 52.381 0.00 0.00 31.60 3.62
140 141 1.337823 ACGTCGTCCTCCCTTGAAATG 60.338 52.381 0.00 0.00 0.00 2.32
141 142 0.974383 ACGTCGTCCTCCCTTGAAAT 59.026 50.000 0.00 0.00 0.00 2.17
142 143 1.270550 GTACGTCGTCCTCCCTTGAAA 59.729 52.381 0.00 0.00 0.00 2.69
143 144 0.883833 GTACGTCGTCCTCCCTTGAA 59.116 55.000 0.00 0.00 0.00 2.69
144 145 0.962356 GGTACGTCGTCCTCCCTTGA 60.962 60.000 0.00 0.00 0.00 3.02
145 146 1.246056 TGGTACGTCGTCCTCCCTTG 61.246 60.000 0.00 0.00 0.00 3.61
148 149 1.033746 TCATGGTACGTCGTCCTCCC 61.034 60.000 0.00 0.00 0.00 4.30
149 150 1.030457 ATCATGGTACGTCGTCCTCC 58.970 55.000 0.00 4.18 0.00 4.30
150 151 2.877168 AGTATCATGGTACGTCGTCCTC 59.123 50.000 10.46 0.00 0.00 3.71
151 152 2.928334 AGTATCATGGTACGTCGTCCT 58.072 47.619 10.46 0.00 0.00 3.85
152 153 3.705043 AAGTATCATGGTACGTCGTCC 57.295 47.619 10.46 3.96 0.00 4.79
153 154 4.203764 CGAAAAGTATCATGGTACGTCGTC 59.796 45.833 21.72 14.34 0.00 4.20
154 155 4.100529 CGAAAAGTATCATGGTACGTCGT 58.899 43.478 21.72 2.21 0.00 4.34
155 156 4.345288 TCGAAAAGTATCATGGTACGTCG 58.655 43.478 23.00 23.00 33.52 5.12
156 157 6.361748 GGTATCGAAAAGTATCATGGTACGTC 59.638 42.308 10.46 8.55 0.00 4.34
158 159 6.444633 AGGTATCGAAAAGTATCATGGTACG 58.555 40.000 10.46 0.00 0.00 3.67
159 160 9.408069 CTTAGGTATCGAAAAGTATCATGGTAC 57.592 37.037 8.15 8.15 0.00 3.34
160 161 9.139734 ACTTAGGTATCGAAAAGTATCATGGTA 57.860 33.333 0.00 0.00 30.62 3.25
165 166 9.715121 ACAAAACTTAGGTATCGAAAAGTATCA 57.285 29.630 0.00 0.00 32.09 2.15
166 167 9.968743 CACAAAACTTAGGTATCGAAAAGTATC 57.031 33.333 0.00 0.00 32.09 2.24
167 168 9.715121 TCACAAAACTTAGGTATCGAAAAGTAT 57.285 29.630 0.00 0.00 32.09 2.12
168 169 9.545105 TTCACAAAACTTAGGTATCGAAAAGTA 57.455 29.630 0.00 0.00 32.09 2.24
169 170 8.441312 TTCACAAAACTTAGGTATCGAAAAGT 57.559 30.769 0.00 0.00 33.72 2.66
170 171 7.534239 GCTTCACAAAACTTAGGTATCGAAAAG 59.466 37.037 0.00 0.00 0.00 2.27
171 172 7.357303 GCTTCACAAAACTTAGGTATCGAAAA 58.643 34.615 0.00 0.00 0.00 2.29
172 173 6.072893 GGCTTCACAAAACTTAGGTATCGAAA 60.073 38.462 0.00 0.00 0.00 3.46
173 174 5.410439 GGCTTCACAAAACTTAGGTATCGAA 59.590 40.000 0.00 0.00 0.00 3.71
174 175 4.933400 GGCTTCACAAAACTTAGGTATCGA 59.067 41.667 0.00 0.00 0.00 3.59
175 176 4.094442 GGGCTTCACAAAACTTAGGTATCG 59.906 45.833 0.00 0.00 0.00 2.92
176 177 5.254115 AGGGCTTCACAAAACTTAGGTATC 58.746 41.667 0.00 0.00 0.00 2.24
177 178 5.256806 AGGGCTTCACAAAACTTAGGTAT 57.743 39.130 0.00 0.00 0.00 2.73
178 179 4.717279 AGGGCTTCACAAAACTTAGGTA 57.283 40.909 0.00 0.00 0.00 3.08
179 180 3.595190 AGGGCTTCACAAAACTTAGGT 57.405 42.857 0.00 0.00 0.00 3.08
180 181 4.652822 AGTAGGGCTTCACAAAACTTAGG 58.347 43.478 0.00 0.00 0.00 2.69
181 182 6.635030 AAAGTAGGGCTTCACAAAACTTAG 57.365 37.500 0.00 0.00 36.17 2.18
182 183 6.238538 CGAAAAGTAGGGCTTCACAAAACTTA 60.239 38.462 0.00 0.00 36.17 2.24
183 184 5.449999 CGAAAAGTAGGGCTTCACAAAACTT 60.450 40.000 0.00 0.00 36.17 2.66
184 185 4.036380 CGAAAAGTAGGGCTTCACAAAACT 59.964 41.667 0.00 0.00 36.17 2.66
185 186 4.035909 TCGAAAAGTAGGGCTTCACAAAAC 59.964 41.667 0.00 0.00 36.17 2.43
186 187 4.200874 TCGAAAAGTAGGGCTTCACAAAA 58.799 39.130 0.00 0.00 36.17 2.44
187 188 3.811083 TCGAAAAGTAGGGCTTCACAAA 58.189 40.909 0.00 0.00 36.17 2.83
188 189 3.070446 TCTCGAAAAGTAGGGCTTCACAA 59.930 43.478 0.00 0.00 36.17 3.33
189 190 2.631062 TCTCGAAAAGTAGGGCTTCACA 59.369 45.455 0.00 0.00 36.17 3.58
190 191 2.994578 GTCTCGAAAAGTAGGGCTTCAC 59.005 50.000 0.00 0.00 36.17 3.18
191 192 2.028385 GGTCTCGAAAAGTAGGGCTTCA 60.028 50.000 0.00 0.00 36.17 3.02
192 193 2.028385 TGGTCTCGAAAAGTAGGGCTTC 60.028 50.000 0.00 0.00 36.17 3.86
193 194 1.975680 TGGTCTCGAAAAGTAGGGCTT 59.024 47.619 0.00 0.00 39.52 4.35
194 195 1.640917 TGGTCTCGAAAAGTAGGGCT 58.359 50.000 0.00 0.00 0.00 5.19
195 196 2.467566 TTGGTCTCGAAAAGTAGGGC 57.532 50.000 0.00 0.00 0.00 5.19
196 197 4.004196 ACTTTGGTCTCGAAAAGTAGGG 57.996 45.455 10.48 0.00 43.13 3.53
197 198 6.183360 ACAAAACTTTGGTCTCGAAAAGTAGG 60.183 38.462 12.13 8.20 43.92 3.18
198 199 6.687105 CACAAAACTTTGGTCTCGAAAAGTAG 59.313 38.462 12.13 8.73 43.92 2.57
199 200 6.372103 TCACAAAACTTTGGTCTCGAAAAGTA 59.628 34.615 12.13 0.00 43.92 2.24
200 201 5.182380 TCACAAAACTTTGGTCTCGAAAAGT 59.818 36.000 7.06 7.06 46.03 2.66
201 202 5.636837 TCACAAAACTTTGGTCTCGAAAAG 58.363 37.500 7.09 5.90 42.34 2.27
202 203 5.630661 TCACAAAACTTTGGTCTCGAAAA 57.369 34.783 7.09 0.00 42.34 2.29
203 204 5.630661 TTCACAAAACTTTGGTCTCGAAA 57.369 34.783 7.09 0.00 42.34 3.46
204 205 4.438200 GCTTCACAAAACTTTGGTCTCGAA 60.438 41.667 7.09 1.76 42.34 3.71
205 206 3.064820 GCTTCACAAAACTTTGGTCTCGA 59.935 43.478 7.09 0.00 42.34 4.04
206 207 3.363178 GCTTCACAAAACTTTGGTCTCG 58.637 45.455 7.09 0.00 42.34 4.04
207 208 3.490933 GGGCTTCACAAAACTTTGGTCTC 60.491 47.826 7.09 0.00 42.34 3.36
208 209 2.430694 GGGCTTCACAAAACTTTGGTCT 59.569 45.455 7.09 0.00 42.34 3.85
209 210 2.430694 AGGGCTTCACAAAACTTTGGTC 59.569 45.455 7.09 0.00 42.34 4.02
210 211 2.168313 CAGGGCTTCACAAAACTTTGGT 59.832 45.455 7.09 0.00 42.34 3.67
211 212 2.825205 CAGGGCTTCACAAAACTTTGG 58.175 47.619 7.09 0.00 42.34 3.28
212 213 2.159057 AGCAGGGCTTCACAAAACTTTG 60.159 45.455 0.60 0.60 38.91 2.77
213 214 2.110578 AGCAGGGCTTCACAAAACTTT 58.889 42.857 0.00 0.00 33.89 2.66
214 215 1.780503 AGCAGGGCTTCACAAAACTT 58.219 45.000 0.00 0.00 33.89 2.66
215 216 1.780503 AAGCAGGGCTTCACAAAACT 58.219 45.000 0.00 0.00 46.77 2.66
226 227 1.676967 CCAGAGACCAAAGCAGGGC 60.677 63.158 0.00 0.00 36.73 5.19
227 228 0.111253 AACCAGAGACCAAAGCAGGG 59.889 55.000 0.00 0.00 0.00 4.45
228 229 1.610522 CAAACCAGAGACCAAAGCAGG 59.389 52.381 0.00 0.00 0.00 4.85
229 230 2.575532 TCAAACCAGAGACCAAAGCAG 58.424 47.619 0.00 0.00 0.00 4.24
230 231 2.727123 TCAAACCAGAGACCAAAGCA 57.273 45.000 0.00 0.00 0.00 3.91
231 232 2.229784 CCATCAAACCAGAGACCAAAGC 59.770 50.000 0.00 0.00 0.00 3.51
232 233 3.490348 ACCATCAAACCAGAGACCAAAG 58.510 45.455 0.00 0.00 0.00 2.77
233 234 3.593442 ACCATCAAACCAGAGACCAAA 57.407 42.857 0.00 0.00 0.00 3.28
234 235 3.221771 CAACCATCAAACCAGAGACCAA 58.778 45.455 0.00 0.00 0.00 3.67
235 236 2.174639 ACAACCATCAAACCAGAGACCA 59.825 45.455 0.00 0.00 0.00 4.02
236 237 2.863809 ACAACCATCAAACCAGAGACC 58.136 47.619 0.00 0.00 0.00 3.85
237 238 3.432252 CGTACAACCATCAAACCAGAGAC 59.568 47.826 0.00 0.00 0.00 3.36
238 239 3.070446 ACGTACAACCATCAAACCAGAGA 59.930 43.478 0.00 0.00 0.00 3.10
239 240 3.186409 CACGTACAACCATCAAACCAGAG 59.814 47.826 0.00 0.00 0.00 3.35
240 241 3.135225 CACGTACAACCATCAAACCAGA 58.865 45.455 0.00 0.00 0.00 3.86
241 242 2.350388 GCACGTACAACCATCAAACCAG 60.350 50.000 0.00 0.00 0.00 4.00
242 243 1.604755 GCACGTACAACCATCAAACCA 59.395 47.619 0.00 0.00 0.00 3.67
243 244 1.877443 AGCACGTACAACCATCAAACC 59.123 47.619 0.00 0.00 0.00 3.27
244 245 4.735662 TTAGCACGTACAACCATCAAAC 57.264 40.909 0.00 0.00 0.00 2.93
245 246 5.752892 TTTTAGCACGTACAACCATCAAA 57.247 34.783 0.00 0.00 0.00 2.69
246 247 5.752892 TTTTTAGCACGTACAACCATCAA 57.247 34.783 0.00 0.00 0.00 2.57
247 248 5.106475 GGATTTTTAGCACGTACAACCATCA 60.106 40.000 0.00 0.00 0.00 3.07
248 249 5.329493 GGATTTTTAGCACGTACAACCATC 58.671 41.667 0.00 0.00 0.00 3.51
249 250 4.142773 CGGATTTTTAGCACGTACAACCAT 60.143 41.667 0.00 0.00 0.00 3.55
250 251 3.186817 CGGATTTTTAGCACGTACAACCA 59.813 43.478 0.00 0.00 0.00 3.67
251 252 3.425227 CCGGATTTTTAGCACGTACAACC 60.425 47.826 0.00 0.00 0.00 3.77
252 253 3.187022 ACCGGATTTTTAGCACGTACAAC 59.813 43.478 9.46 0.00 0.00 3.32
253 254 3.401182 ACCGGATTTTTAGCACGTACAA 58.599 40.909 9.46 0.00 0.00 2.41
254 255 3.042871 ACCGGATTTTTAGCACGTACA 57.957 42.857 9.46 0.00 0.00 2.90
255 256 3.925913 TGTACCGGATTTTTAGCACGTAC 59.074 43.478 9.46 0.00 0.00 3.67
256 257 4.185467 TGTACCGGATTTTTAGCACGTA 57.815 40.909 9.46 0.00 0.00 3.57
257 258 3.042871 TGTACCGGATTTTTAGCACGT 57.957 42.857 9.46 0.00 0.00 4.49
258 259 4.331717 AGAATGTACCGGATTTTTAGCACG 59.668 41.667 9.46 0.00 0.00 5.34
259 260 5.220796 GGAGAATGTACCGGATTTTTAGCAC 60.221 44.000 9.46 0.00 0.00 4.40
260 261 4.879545 GGAGAATGTACCGGATTTTTAGCA 59.120 41.667 9.46 0.00 0.00 3.49
261 262 4.275196 GGGAGAATGTACCGGATTTTTAGC 59.725 45.833 9.46 0.00 0.00 3.09
262 263 5.433526 TGGGAGAATGTACCGGATTTTTAG 58.566 41.667 9.46 0.00 0.00 1.85
263 264 5.438698 TGGGAGAATGTACCGGATTTTTA 57.561 39.130 9.46 0.00 0.00 1.52
264 265 4.310022 TGGGAGAATGTACCGGATTTTT 57.690 40.909 9.46 0.00 0.00 1.94
265 266 4.461198 GATGGGAGAATGTACCGGATTTT 58.539 43.478 9.46 0.00 0.00 1.82
266 267 3.181443 GGATGGGAGAATGTACCGGATTT 60.181 47.826 9.46 0.00 0.00 2.17
267 268 2.372172 GGATGGGAGAATGTACCGGATT 59.628 50.000 9.46 0.00 0.00 3.01
268 269 1.978580 GGATGGGAGAATGTACCGGAT 59.021 52.381 9.46 0.00 0.00 4.18
269 270 1.062428 AGGATGGGAGAATGTACCGGA 60.062 52.381 9.46 0.00 0.00 5.14
270 271 1.070758 CAGGATGGGAGAATGTACCGG 59.929 57.143 0.00 0.00 0.00 5.28
271 272 2.039418 TCAGGATGGGAGAATGTACCG 58.961 52.381 0.00 0.00 36.16 4.02
272 273 4.503714 TTTCAGGATGGGAGAATGTACC 57.496 45.455 0.00 0.00 36.16 3.34
273 274 5.684704 TCATTTCAGGATGGGAGAATGTAC 58.315 41.667 0.00 0.00 36.16 2.90
274 275 5.974156 TCATTTCAGGATGGGAGAATGTA 57.026 39.130 0.00 0.00 36.16 2.29
275 276 4.868172 TCATTTCAGGATGGGAGAATGT 57.132 40.909 0.00 0.00 36.16 2.71
276 277 5.707242 CATCATTTCAGGATGGGAGAATG 57.293 43.478 0.00 0.00 38.74 2.67
284 285 4.275810 ACAGAACCCATCATTTCAGGATG 58.724 43.478 0.00 0.00 41.39 3.51
285 286 4.598036 ACAGAACCCATCATTTCAGGAT 57.402 40.909 0.00 0.00 0.00 3.24
286 287 4.387026 AACAGAACCCATCATTTCAGGA 57.613 40.909 0.00 0.00 0.00 3.86
287 288 5.393461 GCTTAACAGAACCCATCATTTCAGG 60.393 44.000 0.00 0.00 0.00 3.86
288 289 5.183713 TGCTTAACAGAACCCATCATTTCAG 59.816 40.000 0.00 0.00 0.00 3.02
289 290 5.076182 TGCTTAACAGAACCCATCATTTCA 58.924 37.500 0.00 0.00 0.00 2.69
290 291 5.643379 TGCTTAACAGAACCCATCATTTC 57.357 39.130 0.00 0.00 0.00 2.17
291 292 6.183360 TGTTTGCTTAACAGAACCCATCATTT 60.183 34.615 1.54 0.00 41.73 2.32
298 299 6.045955 TCAATTTGTTTGCTTAACAGAACCC 58.954 36.000 5.38 0.00 46.81 4.11
304 305 4.502282 CGTGCTCAATTTGTTTGCTTAACA 59.498 37.500 1.54 1.54 44.81 2.41
361 362 3.876914 TGTTTTGCACTCGAAGAACTGAT 59.123 39.130 0.00 0.00 34.09 2.90
367 368 4.427096 TTGTTTGTTTTGCACTCGAAGA 57.573 36.364 0.00 0.00 0.00 2.87
369 370 5.907197 TTTTTGTTTGTTTTGCACTCGAA 57.093 30.435 0.00 0.00 0.00 3.71
407 416 1.134946 GTGTGCTTTTGGTGCTTGAGT 59.865 47.619 0.00 0.00 0.00 3.41
409 418 1.135141 GTGTGTGCTTTTGGTGCTTGA 60.135 47.619 0.00 0.00 0.00 3.02
410 419 1.280066 GTGTGTGCTTTTGGTGCTTG 58.720 50.000 0.00 0.00 0.00 4.01
411 420 0.894141 TGTGTGTGCTTTTGGTGCTT 59.106 45.000 0.00 0.00 0.00 3.91
412 421 0.894141 TTGTGTGTGCTTTTGGTGCT 59.106 45.000 0.00 0.00 0.00 4.40
413 422 0.998669 GTTGTGTGTGCTTTTGGTGC 59.001 50.000 0.00 0.00 0.00 5.01
414 423 2.261345 CTGTTGTGTGTGCTTTTGGTG 58.739 47.619 0.00 0.00 0.00 4.17
415 424 1.404047 GCTGTTGTGTGTGCTTTTGGT 60.404 47.619 0.00 0.00 0.00 3.67
416 425 1.280066 GCTGTTGTGTGTGCTTTTGG 58.720 50.000 0.00 0.00 0.00 3.28
417 426 1.993542 TGCTGTTGTGTGTGCTTTTG 58.006 45.000 0.00 0.00 0.00 2.44
418 427 2.965572 ATGCTGTTGTGTGTGCTTTT 57.034 40.000 0.00 0.00 0.00 2.27
419 428 2.965572 AATGCTGTTGTGTGTGCTTT 57.034 40.000 0.00 0.00 0.00 3.51
420 429 2.481795 GGAAATGCTGTTGTGTGTGCTT 60.482 45.455 0.00 0.00 0.00 3.91
421 430 1.067516 GGAAATGCTGTTGTGTGTGCT 59.932 47.619 0.00 0.00 0.00 4.40
422 431 1.490621 GGAAATGCTGTTGTGTGTGC 58.509 50.000 0.00 0.00 0.00 4.57
423 432 1.600164 CCGGAAATGCTGTTGTGTGTG 60.600 52.381 0.00 0.00 0.00 3.82
424 433 0.667993 CCGGAAATGCTGTTGTGTGT 59.332 50.000 0.00 0.00 0.00 3.72
425 434 0.667993 ACCGGAAATGCTGTTGTGTG 59.332 50.000 9.46 0.00 0.00 3.82
426 435 1.398692 AACCGGAAATGCTGTTGTGT 58.601 45.000 9.46 0.00 0.00 3.72
427 436 2.507339 AAACCGGAAATGCTGTTGTG 57.493 45.000 9.46 0.00 0.00 3.33
428 437 4.657436 TTTAAACCGGAAATGCTGTTGT 57.343 36.364 9.46 0.00 0.00 3.32
429 438 5.226396 TGATTTAAACCGGAAATGCTGTTG 58.774 37.500 9.46 0.00 0.00 3.33
430 439 5.461032 TGATTTAAACCGGAAATGCTGTT 57.539 34.783 9.46 0.00 0.00 3.16
431 440 4.618227 GCTGATTTAAACCGGAAATGCTGT 60.618 41.667 9.46 0.00 0.00 4.40
432 441 3.859386 GCTGATTTAAACCGGAAATGCTG 59.141 43.478 9.46 4.24 0.00 4.41
433 442 3.763897 AGCTGATTTAAACCGGAAATGCT 59.236 39.130 9.46 7.26 0.00 3.79
434 443 4.105486 GAGCTGATTTAAACCGGAAATGC 58.895 43.478 9.46 4.91 0.00 3.56
435 444 5.309323 TGAGCTGATTTAAACCGGAAATG 57.691 39.130 9.46 0.00 0.00 2.32
436 445 5.163519 CCATGAGCTGATTTAAACCGGAAAT 60.164 40.000 9.46 3.34 0.00 2.17
437 446 4.157656 CCATGAGCTGATTTAAACCGGAAA 59.842 41.667 9.46 0.00 0.00 3.13
438 447 3.694072 CCATGAGCTGATTTAAACCGGAA 59.306 43.478 9.46 0.00 0.00 4.30
439 448 3.278574 CCATGAGCTGATTTAAACCGGA 58.721 45.455 9.46 0.00 0.00 5.14
440 449 2.223572 GCCATGAGCTGATTTAAACCGG 60.224 50.000 0.00 0.00 38.99 5.28
441 450 2.423185 TGCCATGAGCTGATTTAAACCG 59.577 45.455 0.00 0.00 44.23 4.44
442 451 4.365723 CATGCCATGAGCTGATTTAAACC 58.634 43.478 0.00 0.00 44.23 3.27
443 452 4.142093 ACCATGCCATGAGCTGATTTAAAC 60.142 41.667 6.18 0.00 44.23 2.01
444 453 4.025360 ACCATGCCATGAGCTGATTTAAA 58.975 39.130 6.18 0.00 44.23 1.52
445 454 3.634504 ACCATGCCATGAGCTGATTTAA 58.365 40.909 6.18 0.00 44.23 1.52
446 455 3.301794 ACCATGCCATGAGCTGATTTA 57.698 42.857 6.18 0.00 44.23 1.40
447 456 2.154567 ACCATGCCATGAGCTGATTT 57.845 45.000 6.18 0.00 44.23 2.17
448 457 3.301794 TTACCATGCCATGAGCTGATT 57.698 42.857 6.18 0.00 44.23 2.57
449 458 3.301794 TTTACCATGCCATGAGCTGAT 57.698 42.857 6.18 0.00 44.23 2.90
450 459 2.754552 GTTTTACCATGCCATGAGCTGA 59.245 45.455 6.18 0.00 44.23 4.26
451 460 2.492881 TGTTTTACCATGCCATGAGCTG 59.507 45.455 6.18 0.00 44.23 4.24
452 461 2.806434 TGTTTTACCATGCCATGAGCT 58.194 42.857 6.18 0.00 44.23 4.09
453 462 3.591196 TTGTTTTACCATGCCATGAGC 57.409 42.857 6.18 0.00 44.14 4.26
454 463 6.096705 TCCTATTTGTTTTACCATGCCATGAG 59.903 38.462 6.18 0.00 0.00 2.90
455 464 5.954752 TCCTATTTGTTTTACCATGCCATGA 59.045 36.000 6.18 0.00 0.00 3.07
462 471 4.956075 CCCTGCTCCTATTTGTTTTACCAT 59.044 41.667 0.00 0.00 0.00 3.55
466 475 3.361786 GGCCCTGCTCCTATTTGTTTTA 58.638 45.455 0.00 0.00 0.00 1.52
468 477 1.619704 GGGCCCTGCTCCTATTTGTTT 60.620 52.381 17.04 0.00 0.00 2.83
477 486 2.592308 CTAGTTGGGCCCTGCTCC 59.408 66.667 25.70 5.96 0.00 4.70
576 631 3.084579 CTACGGCGAGCAAAGCTG 58.915 61.111 16.62 5.53 45.86 4.24
577 632 2.815647 GCTACGGCGAGCAAAGCT 60.816 61.111 16.62 0.00 43.88 3.74
578 633 3.865830 GGCTACGGCGAGCAAAGC 61.866 66.667 24.88 18.54 44.76 3.51
579 634 2.125512 AGGCTACGGCGAGCAAAG 60.126 61.111 24.88 11.74 44.76 2.77
590 660 3.468140 GGTCACCGGGGAGGCTAC 61.468 72.222 6.67 0.00 46.52 3.58
609 679 2.358369 TCGACGACGAGGTGAGCT 60.358 61.111 5.75 0.00 43.81 4.09
634 704 2.645510 CGACGACACGCACCTCAAC 61.646 63.158 0.00 0.00 0.00 3.18
650 720 3.781307 CCTCAACGCCCCCATCGA 61.781 66.667 0.00 0.00 0.00 3.59
651 721 4.096003 ACCTCAACGCCCCCATCG 62.096 66.667 0.00 0.00 0.00 3.84
652 722 2.438434 CACCTCAACGCCCCCATC 60.438 66.667 0.00 0.00 0.00 3.51
653 723 3.256960 ACACCTCAACGCCCCCAT 61.257 61.111 0.00 0.00 0.00 4.00
654 724 4.263572 CACACCTCAACGCCCCCA 62.264 66.667 0.00 0.00 0.00 4.96
655 725 4.265056 ACACACCTCAACGCCCCC 62.265 66.667 0.00 0.00 0.00 5.40
656 726 2.978010 CACACACCTCAACGCCCC 60.978 66.667 0.00 0.00 0.00 5.80
657 727 2.203153 ACACACACCTCAACGCCC 60.203 61.111 0.00 0.00 0.00 6.13
658 728 2.594962 CGACACACACCTCAACGCC 61.595 63.158 0.00 0.00 0.00 5.68
659 729 1.548973 CTCGACACACACCTCAACGC 61.549 60.000 0.00 0.00 0.00 4.84
660 730 1.548973 GCTCGACACACACCTCAACG 61.549 60.000 0.00 0.00 0.00 4.10
661 731 1.548973 CGCTCGACACACACCTCAAC 61.549 60.000 0.00 0.00 0.00 3.18
662 732 1.299850 CGCTCGACACACACCTCAA 60.300 57.895 0.00 0.00 0.00 3.02
663 733 2.130073 CTCGCTCGACACACACCTCA 62.130 60.000 0.00 0.00 0.00 3.86
664 734 1.442857 CTCGCTCGACACACACCTC 60.443 63.158 0.00 0.00 0.00 3.85
665 735 2.645567 CTCGCTCGACACACACCT 59.354 61.111 0.00 0.00 0.00 4.00
666 736 2.430921 CCTCGCTCGACACACACC 60.431 66.667 0.00 0.00 0.00 4.16
667 737 1.442857 CTCCTCGCTCGACACACAC 60.443 63.158 0.00 0.00 0.00 3.82
668 738 2.626780 CCTCCTCGCTCGACACACA 61.627 63.158 0.00 0.00 0.00 3.72
669 739 2.179517 CCTCCTCGCTCGACACAC 59.820 66.667 0.00 0.00 0.00 3.82
670 740 3.749064 GCCTCCTCGCTCGACACA 61.749 66.667 0.00 0.00 0.00 3.72
671 741 4.500116 GGCCTCCTCGCTCGACAC 62.500 72.222 0.00 0.00 0.00 3.67
679 749 4.292178 GAGATGGCGGCCTCCTCG 62.292 72.222 21.46 0.00 0.00 4.63
698 768 4.437587 GGGAGAGGTCGTCCGGGA 62.438 72.222 0.00 0.00 39.05 5.14
717 805 4.147449 TCTCCATCAGGCGGTGCG 62.147 66.667 0.00 0.00 33.74 5.34
739 827 1.188871 CCCCTCCCCGCTCTCTTATC 61.189 65.000 0.00 0.00 0.00 1.75
749 837 2.207924 CGTAGATTCCCCCTCCCCG 61.208 68.421 0.00 0.00 0.00 5.73
766 854 0.108898 CCTCTCACTCACTTGCTCCG 60.109 60.000 0.00 0.00 0.00 4.63
806 894 1.618640 GCTCTGAACGAGAACCACGC 61.619 60.000 0.00 0.00 42.62 5.34
807 895 1.337817 CGCTCTGAACGAGAACCACG 61.338 60.000 0.00 0.00 42.62 4.94
808 896 0.039437 TCGCTCTGAACGAGAACCAC 60.039 55.000 0.00 0.00 42.62 4.16
809 897 0.671796 TTCGCTCTGAACGAGAACCA 59.328 50.000 3.24 0.00 42.62 3.67
810 898 1.061485 GTTCGCTCTGAACGAGAACC 58.939 55.000 3.24 0.00 46.85 3.62
818 906 1.660355 AGCAGTCGTTCGCTCTGAA 59.340 52.632 16.02 0.00 31.16 3.02
819 907 3.355756 AGCAGTCGTTCGCTCTGA 58.644 55.556 16.02 0.00 31.16 3.27
844 932 0.179076 CGCATGTCTCCTGCCACATA 60.179 55.000 0.00 0.00 36.24 2.29
865 953 3.244976 GAATTTGGTGGCACGAATCTTG 58.755 45.455 15.88 0.00 0.00 3.02
1372 1472 4.500116 GAGCGCGGTGGAGAGGAC 62.500 72.222 18.92 0.00 0.00 3.85
1860 1960 1.067142 TCCATTTCGTCGAACAGGAGG 60.067 52.381 18.72 11.71 0.00 4.30
1862 1962 1.671850 GCTCCATTTCGTCGAACAGGA 60.672 52.381 20.44 20.44 0.00 3.86
1869 1969 1.421485 GCACTGCTCCATTTCGTCG 59.579 57.895 0.00 0.00 0.00 5.12
1890 1990 4.415332 CCACGGTCCGGAGTCACG 62.415 72.222 17.28 10.47 0.00 4.35
1992 2092 1.420138 ACATCGTCCAGACCAAAACCT 59.580 47.619 0.00 0.00 0.00 3.50
2055 2155 2.359376 TCTTCCAGATCCCCTCCAAA 57.641 50.000 0.00 0.00 0.00 3.28
2214 2314 1.311859 CATCCAACGCATGCCTATGT 58.688 50.000 13.15 0.33 36.65 2.29
2226 2326 3.751518 ACCAGTAACCAGAACATCCAAC 58.248 45.455 0.00 0.00 0.00 3.77
2244 2344 3.011818 CACATCTCTGCAGCATAAACCA 58.988 45.455 9.47 0.00 0.00 3.67
2322 2422 1.244019 AAACCCTGAATGCACGCTCC 61.244 55.000 0.00 0.00 0.00 4.70
2940 3040 4.074970 AGAAGAAAACTCATGTCGCCATT 58.925 39.130 0.00 0.00 0.00 3.16
2941 3041 3.679389 AGAAGAAAACTCATGTCGCCAT 58.321 40.909 0.00 0.00 0.00 4.40
2942 3042 3.067106 GAGAAGAAAACTCATGTCGCCA 58.933 45.455 0.00 0.00 34.87 5.69
2943 3043 3.330267 AGAGAAGAAAACTCATGTCGCC 58.670 45.455 0.00 0.00 36.91 5.54
2944 3044 3.369451 GGAGAGAAGAAAACTCATGTCGC 59.631 47.826 0.00 0.00 36.91 5.19
2945 3045 3.929610 GGGAGAGAAGAAAACTCATGTCG 59.070 47.826 0.00 0.00 36.91 4.35
3035 3141 7.732025 TCCATGTCAGTACTTCAGTCTTTTAA 58.268 34.615 0.00 0.00 0.00 1.52
3094 3200 5.292834 AGAGTAGAAACATGTGCATCAATCG 59.707 40.000 0.00 0.00 0.00 3.34
3160 3276 4.789095 ACGTGTAGCTGTAACACAAAAG 57.211 40.909 16.41 4.70 46.05 2.27
3372 3489 8.884726 CCTCTAAATTTCTTTTACAGCCTAGAC 58.115 37.037 0.00 0.00 0.00 2.59
3373 3490 7.553044 GCCTCTAAATTTCTTTTACAGCCTAGA 59.447 37.037 0.00 0.00 0.00 2.43
3385 3502 8.160106 TCTCTTTTCTGAGCCTCTAAATTTCTT 58.840 33.333 0.00 0.00 34.29 2.52
3395 3512 3.745458 CACTTGTCTCTTTTCTGAGCCTC 59.255 47.826 0.00 0.00 34.29 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.