Multiple sequence alignment - TraesCS7D01G420800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G420800 chr7D 100.000 3365 0 0 1 3365 540508907 540505543 0.000000e+00 6215.0
1 TraesCS7D01G420800 chr7D 85.149 101 9 5 499 593 176570979 176571079 7.680000e-17 99.0
2 TraesCS7D01G420800 chr7B 93.050 2403 108 25 976 3358 583623501 583621138 0.000000e+00 3458.0
3 TraesCS7D01G420800 chr7B 82.156 538 45 27 2129 2657 583559445 583558950 6.720000e-112 414.0
4 TraesCS7D01G420800 chr7B 92.737 179 9 1 698 876 583623793 583623619 4.310000e-64 255.0
5 TraesCS7D01G420800 chr7B 94.340 53 3 0 902 954 583623550 583623498 7.740000e-12 82.4
6 TraesCS7D01G420800 chr7B 81.633 98 12 3 500 591 749108754 749108851 3.600000e-10 76.8
7 TraesCS7D01G420800 chr7A 91.599 2345 129 34 976 3281 621858043 621855728 0.000000e+00 3177.0
8 TraesCS7D01G420800 chr7A 82.857 175 6 8 706 880 621858237 621858087 5.860000e-28 135.0
9 TraesCS7D01G420800 chr7A 79.839 124 15 8 489 603 23682359 23682481 7.740000e-12 82.4
10 TraesCS7D01G420800 chr7A 80.734 109 14 7 489 591 30456037 30456144 1.000000e-10 78.7
11 TraesCS7D01G420800 chr6A 84.718 373 48 4 1943 2309 15582478 15582109 6.860000e-97 364.0
12 TraesCS7D01G420800 chr6A 83.429 175 27 2 1667 1840 15577354 15577181 9.660000e-36 161.0
13 TraesCS7D01G420800 chr6A 83.486 109 10 7 495 596 617679110 617679003 9.940000e-16 95.3
14 TraesCS7D01G420800 chr6B 81.912 387 61 4 1943 2323 26077762 26078145 5.420000e-83 318.0
15 TraesCS7D01G420800 chr6B 80.488 123 13 8 477 593 62729106 62728989 2.150000e-12 84.2
16 TraesCS7D01G420800 chr6D 81.414 382 62 4 1944 2319 14292258 14291880 1.520000e-78 303.0
17 TraesCS7D01G420800 chr6D 84.000 175 24 4 1667 1839 14288925 14288753 7.470000e-37 165.0
18 TraesCS7D01G420800 chr3D 85.294 102 7 7 498 593 382833251 382833350 7.680000e-17 99.0
19 TraesCS7D01G420800 chr1D 79.114 158 17 7 440 589 111454599 111454450 9.940000e-16 95.3
20 TraesCS7D01G420800 chr1D 83.495 103 10 5 498 593 408611856 408611754 4.620000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G420800 chr7D 540505543 540508907 3364 True 6215.000000 6215 100.000000 1 3365 1 chr7D.!!$R1 3364
1 TraesCS7D01G420800 chr7B 583621138 583623793 2655 True 1265.133333 3458 93.375667 698 3358 3 chr7B.!!$R2 2660
2 TraesCS7D01G420800 chr7A 621855728 621858237 2509 True 1656.000000 3177 87.228000 706 3281 2 chr7A.!!$R1 2575
3 TraesCS7D01G420800 chr6D 14288753 14292258 3505 True 234.000000 303 82.707000 1667 2319 2 chr6D.!!$R1 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.034896 GTCGAGTCTGCTGGGGAAAA 59.965 55.0 0.0 0.0 0.0 2.29 F
641 642 0.038166 TGAAGATTGGGTGGAGTGCC 59.962 55.0 0.0 0.0 0.0 5.01 F
954 1007 0.179073 CAGGCGACGAGGATTGGATT 60.179 55.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1451 1523 0.384725 CTGCACGCACAGCAAAGTAC 60.385 55.000 0.00 0.0 42.17 2.73 R
2189 3861 1.068333 TGGTTGGACGCGTAGTAGTTC 60.068 52.381 13.97 0.0 0.00 3.01 R
2532 4204 1.202615 ACCTGCATCCTCACATGATCG 60.203 52.381 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.337060 CGGTCGTGCGGTGTGAGA 62.337 66.667 0.00 0.00 0.00 3.27
18 19 2.028484 GGTCGTGCGGTGTGAGAA 59.972 61.111 0.00 0.00 0.00 2.87
20 21 2.022129 GTCGTGCGGTGTGAGAAGG 61.022 63.158 0.00 0.00 0.00 3.46
21 22 2.029073 CGTGCGGTGTGAGAAGGT 59.971 61.111 0.00 0.00 0.00 3.50
22 23 2.022129 CGTGCGGTGTGAGAAGGTC 61.022 63.158 0.00 0.00 0.00 3.85
23 24 2.022129 GTGCGGTGTGAGAAGGTCG 61.022 63.158 0.00 0.00 0.00 4.79
24 25 2.197605 TGCGGTGTGAGAAGGTCGA 61.198 57.895 0.00 0.00 0.00 4.20
26 27 1.957562 CGGTGTGAGAAGGTCGAGT 59.042 57.895 0.00 0.00 0.00 4.18
31 32 0.885196 GTGAGAAGGTCGAGTCTGCT 59.115 55.000 0.00 0.00 0.00 4.24
33 34 0.172352 GAGAAGGTCGAGTCTGCTGG 59.828 60.000 1.19 0.00 0.00 4.85
34 35 1.216710 GAAGGTCGAGTCTGCTGGG 59.783 63.158 0.00 0.00 0.00 4.45
35 36 2.232298 GAAGGTCGAGTCTGCTGGGG 62.232 65.000 0.00 0.00 0.00 4.96
36 37 2.680352 GGTCGAGTCTGCTGGGGA 60.680 66.667 0.00 0.00 0.00 4.81
37 38 2.283529 GGTCGAGTCTGCTGGGGAA 61.284 63.158 0.00 0.00 0.00 3.97
38 39 1.671742 GTCGAGTCTGCTGGGGAAA 59.328 57.895 0.00 0.00 0.00 3.13
39 40 0.034896 GTCGAGTCTGCTGGGGAAAA 59.965 55.000 0.00 0.00 0.00 2.29
40 41 0.321671 TCGAGTCTGCTGGGGAAAAG 59.678 55.000 0.00 0.00 0.00 2.27
41 42 1.301677 CGAGTCTGCTGGGGAAAAGC 61.302 60.000 0.00 0.00 41.22 3.51
45 46 2.985282 TGCTGGGGAAAAGCAGCG 60.985 61.111 0.00 0.00 45.50 5.18
46 47 3.752339 GCTGGGGAAAAGCAGCGG 61.752 66.667 0.00 0.00 40.52 5.52
47 48 2.282462 CTGGGGAAAAGCAGCGGT 60.282 61.111 0.00 0.00 0.00 5.68
49 50 3.373565 GGGGAAAAGCAGCGGTGG 61.374 66.667 17.54 0.00 0.00 4.61
51 52 4.404654 GGAAAAGCAGCGGTGGCG 62.405 66.667 17.54 0.00 46.35 5.69
52 53 3.660111 GAAAAGCAGCGGTGGCGT 61.660 61.111 17.54 4.25 46.35 5.68
53 54 3.879351 GAAAAGCAGCGGTGGCGTG 62.879 63.158 17.54 0.00 46.35 5.34
79 80 4.812476 TGTGCGGCTCGAATCCGG 62.812 66.667 22.24 0.00 46.51 5.14
102 103 3.407967 GCGGGATGGTGGGAGGAA 61.408 66.667 0.00 0.00 0.00 3.36
103 104 2.590092 CGGGATGGTGGGAGGAAC 59.410 66.667 0.00 0.00 0.00 3.62
117 118 2.496899 AGGAACTCAAATCATGCGGT 57.503 45.000 0.00 0.00 0.00 5.68
118 119 2.086869 AGGAACTCAAATCATGCGGTG 58.913 47.619 0.00 0.00 0.00 4.94
119 120 1.133025 GGAACTCAAATCATGCGGTGG 59.867 52.381 0.00 0.00 0.00 4.61
178 179 4.421515 CCAGGTCTGGCAGCAGGG 62.422 72.222 10.34 4.79 44.73 4.45
235 236 4.379243 AGAAGTGCGGCGGGACAG 62.379 66.667 17.82 0.00 36.89 3.51
236 237 4.373116 GAAGTGCGGCGGGACAGA 62.373 66.667 17.82 0.00 36.89 3.41
237 238 4.681978 AAGTGCGGCGGGACAGAC 62.682 66.667 17.82 0.00 36.89 3.51
241 242 4.373116 GCGGCGGGACAGACTCAA 62.373 66.667 9.78 0.00 0.00 3.02
242 243 2.342279 CGGCGGGACAGACTCAAA 59.658 61.111 0.00 0.00 0.00 2.69
244 245 1.084370 CGGCGGGACAGACTCAAATC 61.084 60.000 0.00 0.00 0.00 2.17
245 246 0.250513 GGCGGGACAGACTCAAATCT 59.749 55.000 0.00 0.00 0.00 2.40
253 254 2.008329 CAGACTCAAATCTGCAGCTCC 58.992 52.381 9.47 0.00 39.77 4.70
254 255 1.907936 AGACTCAAATCTGCAGCTCCT 59.092 47.619 9.47 0.00 0.00 3.69
256 257 1.288350 CTCAAATCTGCAGCTCCTCG 58.712 55.000 9.47 0.00 0.00 4.63
257 258 0.107993 TCAAATCTGCAGCTCCTCGG 60.108 55.000 9.47 0.00 0.00 4.63
259 260 3.729965 AATCTGCAGCTCCTCGGCG 62.730 63.158 9.47 0.00 38.80 6.46
290 291 4.820744 CGGGGATTGCAGGTGGGG 62.821 72.222 0.00 0.00 0.00 4.96
292 293 2.043953 GGGATTGCAGGTGGGGTC 60.044 66.667 0.00 0.00 0.00 4.46
293 294 2.763215 GGATTGCAGGTGGGGTCA 59.237 61.111 0.00 0.00 0.00 4.02
296 297 3.567579 ATTGCAGGTGGGGTCACGG 62.568 63.158 0.00 0.00 44.50 4.94
309 310 4.838152 CACGGCGGGGTCAGGATG 62.838 72.222 13.24 0.00 37.54 3.51
314 315 2.367202 GCGGGGTCAGGATGGAAGA 61.367 63.158 0.00 0.00 36.16 2.87
315 316 1.910580 GCGGGGTCAGGATGGAAGAA 61.911 60.000 0.00 0.00 36.16 2.52
320 321 1.683319 GGTCAGGATGGAAGAAAGGGC 60.683 57.143 0.00 0.00 36.16 5.19
321 322 0.253044 TCAGGATGGAAGAAAGGGCG 59.747 55.000 0.00 0.00 36.16 6.13
323 324 2.121538 GGATGGAAGAAAGGGCGGC 61.122 63.158 0.00 0.00 0.00 6.53
327 328 3.431725 GAAGAAAGGGCGGCGGTG 61.432 66.667 9.78 0.00 0.00 4.94
329 330 4.699522 AGAAAGGGCGGCGGTGAC 62.700 66.667 9.78 0.00 0.00 3.67
332 333 3.860930 AAAGGGCGGCGGTGACAAT 62.861 57.895 9.78 0.00 0.00 2.71
335 336 3.361977 GGCGGCGGTGACAATGTT 61.362 61.111 9.78 0.00 0.00 2.71
336 337 2.642700 GCGGCGGTGACAATGTTT 59.357 55.556 9.78 0.00 0.00 2.83
337 338 1.007849 GCGGCGGTGACAATGTTTT 60.008 52.632 9.78 0.00 0.00 2.43
338 339 1.001745 GCGGCGGTGACAATGTTTTC 61.002 55.000 9.78 0.00 0.00 2.29
339 340 0.724453 CGGCGGTGACAATGTTTTCG 60.724 55.000 0.00 0.00 0.00 3.46
341 342 1.001745 GCGGTGACAATGTTTTCGGC 61.002 55.000 0.00 0.00 0.00 5.54
343 344 0.671251 GGTGACAATGTTTTCGGCCA 59.329 50.000 2.24 0.00 0.00 5.36
345 346 1.606668 GTGACAATGTTTTCGGCCAGA 59.393 47.619 2.24 0.00 0.00 3.86
346 347 2.034053 GTGACAATGTTTTCGGCCAGAA 59.966 45.455 2.24 4.57 37.01 3.02
348 349 3.320541 TGACAATGTTTTCGGCCAGAAAT 59.679 39.130 18.91 7.23 46.98 2.17
349 350 3.913089 ACAATGTTTTCGGCCAGAAATC 58.087 40.909 18.91 17.94 46.98 2.17
350 351 2.916716 CAATGTTTTCGGCCAGAAATCG 59.083 45.455 18.91 6.77 46.98 3.34
351 352 0.239879 TGTTTTCGGCCAGAAATCGC 59.760 50.000 18.91 13.88 46.98 4.58
381 382 4.351054 CGGGCAGGCAGGGAAACT 62.351 66.667 0.00 0.00 0.00 2.66
382 383 2.966732 CGGGCAGGCAGGGAAACTA 61.967 63.158 0.00 0.00 0.00 2.24
383 384 1.382629 GGGCAGGCAGGGAAACTAA 59.617 57.895 0.00 0.00 0.00 2.24
384 385 0.251608 GGGCAGGCAGGGAAACTAAA 60.252 55.000 0.00 0.00 0.00 1.85
385 386 1.627864 GGCAGGCAGGGAAACTAAAA 58.372 50.000 0.00 0.00 0.00 1.52
388 389 2.825532 GCAGGCAGGGAAACTAAAATGA 59.174 45.455 0.00 0.00 0.00 2.57
389 390 3.258123 GCAGGCAGGGAAACTAAAATGAA 59.742 43.478 0.00 0.00 0.00 2.57
390 391 4.619160 GCAGGCAGGGAAACTAAAATGAAG 60.619 45.833 0.00 0.00 0.00 3.02
391 392 3.511540 AGGCAGGGAAACTAAAATGAAGC 59.488 43.478 0.00 0.00 0.00 3.86
392 393 3.501950 GCAGGGAAACTAAAATGAAGCG 58.498 45.455 0.00 0.00 0.00 4.68
393 394 3.673323 GCAGGGAAACTAAAATGAAGCGG 60.673 47.826 0.00 0.00 0.00 5.52
394 395 2.492088 AGGGAAACTAAAATGAAGCGGC 59.508 45.455 0.00 0.00 0.00 6.53
395 396 2.515912 GGAAACTAAAATGAAGCGGCG 58.484 47.619 0.51 0.51 0.00 6.46
396 397 1.911464 GAAACTAAAATGAAGCGGCGC 59.089 47.619 26.86 26.86 0.00 6.53
397 398 1.165270 AACTAAAATGAAGCGGCGCT 58.835 45.000 31.35 31.35 42.56 5.92
406 407 3.425713 AGCGGCGCTTGTCACATG 61.426 61.111 31.35 0.00 33.89 3.21
407 408 3.422303 GCGGCGCTTGTCACATGA 61.422 61.111 26.86 0.00 0.00 3.07
408 409 2.476051 CGGCGCTTGTCACATGAC 59.524 61.111 7.64 5.02 44.97 3.06
410 411 1.499056 GGCGCTTGTCACATGACTG 59.501 57.895 7.64 7.26 44.99 3.51
411 412 1.499056 GCGCTTGTCACATGACTGG 59.501 57.895 12.98 6.93 44.99 4.00
413 414 1.073964 CGCTTGTCACATGACTGGAG 58.926 55.000 12.98 9.16 44.99 3.86
414 415 1.606480 CGCTTGTCACATGACTGGAGT 60.606 52.381 12.98 0.00 44.99 3.85
415 416 2.498167 GCTTGTCACATGACTGGAGTT 58.502 47.619 12.98 0.00 44.99 3.01
416 417 2.880890 GCTTGTCACATGACTGGAGTTT 59.119 45.455 12.98 0.00 44.99 2.66
419 420 5.560953 GCTTGTCACATGACTGGAGTTTTAC 60.561 44.000 12.98 0.00 44.99 2.01
420 421 5.029807 TGTCACATGACTGGAGTTTTACA 57.970 39.130 12.98 0.00 44.99 2.41
421 422 5.620206 TGTCACATGACTGGAGTTTTACAT 58.380 37.500 12.98 0.00 44.99 2.29
423 424 5.700832 GTCACATGACTGGAGTTTTACATCA 59.299 40.000 0.00 0.00 41.65 3.07
424 425 5.700832 TCACATGACTGGAGTTTTACATCAC 59.299 40.000 0.00 0.00 0.00 3.06
425 426 5.003804 ACATGACTGGAGTTTTACATCACC 58.996 41.667 0.00 0.00 0.00 4.02
426 427 4.974645 TGACTGGAGTTTTACATCACCT 57.025 40.909 0.00 0.00 0.00 4.00
427 428 4.894784 TGACTGGAGTTTTACATCACCTC 58.105 43.478 0.00 0.00 0.00 3.85
428 429 3.926616 ACTGGAGTTTTACATCACCTCG 58.073 45.455 0.00 0.00 0.00 4.63
429 430 3.262420 CTGGAGTTTTACATCACCTCGG 58.738 50.000 0.00 0.00 0.00 4.63
431 432 3.517901 TGGAGTTTTACATCACCTCGGAT 59.482 43.478 0.00 0.00 0.00 4.18
438 439 1.945387 CATCACCTCGGATGTGAAGG 58.055 55.000 17.92 10.80 45.15 3.46
439 440 1.208052 CATCACCTCGGATGTGAAGGT 59.792 52.381 17.92 0.00 45.15 3.50
440 441 1.208052 ATCACCTCGGATGTGAAGGTG 59.792 52.381 17.92 13.34 45.15 4.00
441 442 1.021390 CACCTCGGATGTGAAGGTGC 61.021 60.000 7.55 0.00 42.63 5.01
446 447 2.489329 CTCGGATGTGAAGGTGCAAATT 59.511 45.455 0.00 0.00 0.00 1.82
451 452 5.622007 CGGATGTGAAGGTGCAAATTTGTAT 60.622 40.000 19.03 0.26 0.00 2.29
452 453 5.807011 GGATGTGAAGGTGCAAATTTGTATC 59.193 40.000 19.03 15.17 0.00 2.24
453 454 6.350445 GGATGTGAAGGTGCAAATTTGTATCT 60.350 38.462 15.44 15.44 35.69 1.98
454 455 6.012658 TGTGAAGGTGCAAATTTGTATCTC 57.987 37.500 20.45 14.46 32.91 2.75
455 456 5.048083 TGTGAAGGTGCAAATTTGTATCTCC 60.048 40.000 20.45 10.42 32.91 3.71
456 457 5.048083 GTGAAGGTGCAAATTTGTATCTCCA 60.048 40.000 20.45 12.96 32.91 3.86
460 461 6.400568 AGGTGCAAATTTGTATCTCCAAATG 58.599 36.000 15.44 0.00 42.63 2.32
461 462 6.014327 AGGTGCAAATTTGTATCTCCAAATGT 60.014 34.615 15.44 0.00 42.63 2.71
462 463 6.650390 GGTGCAAATTTGTATCTCCAAATGTT 59.350 34.615 19.03 0.00 42.63 2.71
466 467 8.647226 GCAAATTTGTATCTCCAAATGTTGTAC 58.353 33.333 19.03 0.00 42.63 2.90
470 471 8.628630 TTTGTATCTCCAAATGTTGTACATCA 57.371 30.769 9.00 9.00 37.97 3.07
471 472 7.609760 TGTATCTCCAAATGTTGTACATCAC 57.390 36.000 8.76 0.00 37.97 3.06
472 473 7.394016 TGTATCTCCAAATGTTGTACATCACT 58.606 34.615 8.76 0.00 37.97 3.41
473 474 8.536175 TGTATCTCCAAATGTTGTACATCACTA 58.464 33.333 8.76 0.00 37.97 2.74
474 475 9.035607 GTATCTCCAAATGTTGTACATCACTAG 57.964 37.037 8.76 2.38 37.97 2.57
476 477 6.212589 TCTCCAAATGTTGTACATCACTAGGA 59.787 38.462 8.76 13.43 37.97 2.94
477 478 6.406370 TCCAAATGTTGTACATCACTAGGAG 58.594 40.000 8.76 0.00 37.97 3.69
478 479 5.586243 CCAAATGTTGTACATCACTAGGAGG 59.414 44.000 8.76 2.93 37.97 4.30
480 481 5.860941 ATGTTGTACATCACTAGGAGGAG 57.139 43.478 8.76 0.00 32.38 3.69
481 482 4.023980 TGTTGTACATCACTAGGAGGAGG 58.976 47.826 2.41 0.00 0.00 4.30
483 484 3.632333 TGTACATCACTAGGAGGAGGTG 58.368 50.000 8.32 0.00 29.96 4.00
484 485 3.268595 TGTACATCACTAGGAGGAGGTGA 59.731 47.826 8.32 0.00 42.85 4.02
487 488 3.697190 ATCACTAGGAGGAGGTGATGT 57.303 47.619 6.96 0.00 45.32 3.06
488 489 2.739943 TCACTAGGAGGAGGTGATGTG 58.260 52.381 0.00 0.00 35.44 3.21
490 491 3.052566 TCACTAGGAGGAGGTGATGTGAT 60.053 47.826 0.00 0.00 35.44 3.06
491 492 4.168088 TCACTAGGAGGAGGTGATGTGATA 59.832 45.833 0.00 0.00 35.44 2.15
492 493 5.083122 CACTAGGAGGAGGTGATGTGATAT 58.917 45.833 0.00 0.00 33.32 1.63
493 494 6.045577 TCACTAGGAGGAGGTGATGTGATATA 59.954 42.308 0.00 0.00 35.44 0.86
494 495 6.894654 CACTAGGAGGAGGTGATGTGATATAT 59.105 42.308 0.00 0.00 33.32 0.86
522 523 3.328382 TTTCATCTACACCCGTTGGAG 57.672 47.619 0.00 0.00 37.55 3.86
523 524 0.535335 TCATCTACACCCGTTGGAGC 59.465 55.000 0.00 0.00 35.85 4.70
524 525 0.806102 CATCTACACCCGTTGGAGCG 60.806 60.000 0.00 0.00 35.85 5.03
527 528 0.601841 CTACACCCGTTGGAGCGTTT 60.602 55.000 0.00 0.00 34.81 3.60
528 529 0.179051 TACACCCGTTGGAGCGTTTT 60.179 50.000 0.00 0.00 34.81 2.43
529 530 1.033202 ACACCCGTTGGAGCGTTTTT 61.033 50.000 0.00 0.00 34.81 1.94
546 547 3.766068 TTTTTGGCCTTCATGATGCAA 57.234 38.095 16.75 5.57 0.00 4.08
548 549 3.766068 TTTGGCCTTCATGATGCAAAA 57.234 38.095 16.75 15.10 0.00 2.44
549 550 3.322211 TTGGCCTTCATGATGCAAAAG 57.678 42.857 16.75 2.05 0.00 2.27
550 551 2.250031 TGGCCTTCATGATGCAAAAGT 58.750 42.857 16.75 0.00 0.00 2.66
551 552 2.633967 TGGCCTTCATGATGCAAAAGTT 59.366 40.909 16.75 0.00 0.00 2.66
552 553 3.071312 TGGCCTTCATGATGCAAAAGTTT 59.929 39.130 16.75 0.00 0.00 2.66
554 555 4.060205 GCCTTCATGATGCAAAAGTTTGT 58.940 39.130 11.67 0.00 40.24 2.83
557 558 6.202570 GCCTTCATGATGCAAAAGTTTGTTAA 59.797 34.615 11.67 0.00 40.24 2.01
559 560 8.776470 CCTTCATGATGCAAAAGTTTGTTAATT 58.224 29.630 0.00 0.00 40.24 1.40
562 563 9.932699 TCATGATGCAAAAGTTTGTTAATTTTG 57.067 25.926 5.71 6.79 43.48 2.44
599 600 8.709386 TCTATTGAAGATGCTCTTAACAACTC 57.291 34.615 0.00 0.00 36.73 3.01
600 601 8.314021 TCTATTGAAGATGCTCTTAACAACTCA 58.686 33.333 0.00 0.00 36.73 3.41
602 603 5.610398 TGAAGATGCTCTTAACAACTCACA 58.390 37.500 0.00 0.00 36.73 3.58
603 604 6.054941 TGAAGATGCTCTTAACAACTCACAA 58.945 36.000 0.00 0.00 36.73 3.33
604 605 6.542005 TGAAGATGCTCTTAACAACTCACAAA 59.458 34.615 0.00 0.00 36.73 2.83
605 606 6.942532 AGATGCTCTTAACAACTCACAAAA 57.057 33.333 0.00 0.00 0.00 2.44
607 608 4.920376 TGCTCTTAACAACTCACAAAAGC 58.080 39.130 0.00 0.00 0.00 3.51
608 609 3.968724 GCTCTTAACAACTCACAAAAGCG 59.031 43.478 0.00 0.00 0.00 4.68
609 610 4.260620 GCTCTTAACAACTCACAAAAGCGA 60.261 41.667 0.00 0.00 0.00 4.93
610 611 5.151632 TCTTAACAACTCACAAAAGCGAC 57.848 39.130 0.00 0.00 0.00 5.19
611 612 2.844122 AACAACTCACAAAAGCGACC 57.156 45.000 0.00 0.00 0.00 4.79
612 613 1.745232 ACAACTCACAAAAGCGACCA 58.255 45.000 0.00 0.00 0.00 4.02
613 614 1.400494 ACAACTCACAAAAGCGACCAC 59.600 47.619 0.00 0.00 0.00 4.16
615 616 1.745232 ACTCACAAAAGCGACCACAA 58.255 45.000 0.00 0.00 0.00 3.33
617 618 1.670811 CTCACAAAAGCGACCACAACT 59.329 47.619 0.00 0.00 0.00 3.16
620 621 3.311322 TCACAAAAGCGACCACAACTAAG 59.689 43.478 0.00 0.00 0.00 2.18
621 622 3.311322 CACAAAAGCGACCACAACTAAGA 59.689 43.478 0.00 0.00 0.00 2.10
622 623 4.024048 CACAAAAGCGACCACAACTAAGAT 60.024 41.667 0.00 0.00 0.00 2.40
623 624 4.024048 ACAAAAGCGACCACAACTAAGATG 60.024 41.667 0.00 0.00 0.00 2.90
624 625 3.678056 AAGCGACCACAACTAAGATGA 57.322 42.857 0.00 0.00 0.00 2.92
625 626 3.678056 AGCGACCACAACTAAGATGAA 57.322 42.857 0.00 0.00 0.00 2.57
628 629 4.081420 AGCGACCACAACTAAGATGAAGAT 60.081 41.667 0.00 0.00 0.00 2.40
630 631 5.446473 GCGACCACAACTAAGATGAAGATTG 60.446 44.000 0.00 0.00 0.00 2.67
631 632 5.063944 CGACCACAACTAAGATGAAGATTGG 59.936 44.000 0.00 0.00 0.00 3.16
632 633 5.256474 ACCACAACTAAGATGAAGATTGGG 58.744 41.667 0.00 0.00 0.00 4.12
633 634 5.222130 ACCACAACTAAGATGAAGATTGGGT 60.222 40.000 0.00 0.00 0.00 4.51
634 635 5.124457 CCACAACTAAGATGAAGATTGGGTG 59.876 44.000 0.00 0.00 31.53 4.61
635 636 5.124457 CACAACTAAGATGAAGATTGGGTGG 59.876 44.000 0.00 0.00 29.63 4.61
636 637 5.014123 ACAACTAAGATGAAGATTGGGTGGA 59.986 40.000 0.00 0.00 29.63 4.02
637 638 5.365021 ACTAAGATGAAGATTGGGTGGAG 57.635 43.478 0.00 0.00 0.00 3.86
638 639 4.785376 ACTAAGATGAAGATTGGGTGGAGT 59.215 41.667 0.00 0.00 0.00 3.85
639 640 3.641434 AGATGAAGATTGGGTGGAGTG 57.359 47.619 0.00 0.00 0.00 3.51
640 641 2.019984 GATGAAGATTGGGTGGAGTGC 58.980 52.381 0.00 0.00 0.00 4.40
641 642 0.038166 TGAAGATTGGGTGGAGTGCC 59.962 55.000 0.00 0.00 0.00 5.01
642 643 0.681243 GAAGATTGGGTGGAGTGCCC 60.681 60.000 0.00 0.00 46.26 5.36
651 652 3.047877 GGAGTGCCCAACGGTTCG 61.048 66.667 0.00 0.00 34.14 3.95
652 653 3.723348 GAGTGCCCAACGGTTCGC 61.723 66.667 0.00 0.00 0.00 4.70
654 655 4.322385 GTGCCCAACGGTTCGCAC 62.322 66.667 20.46 20.46 44.17 5.34
655 656 4.555709 TGCCCAACGGTTCGCACT 62.556 61.111 7.81 0.00 0.00 4.40
656 657 3.284449 GCCCAACGGTTCGCACTT 61.284 61.111 4.93 0.00 0.00 3.16
657 658 2.943653 CCCAACGGTTCGCACTTC 59.056 61.111 0.00 0.00 0.00 3.01
658 659 2.549282 CCAACGGTTCGCACTTCG 59.451 61.111 0.00 0.00 40.15 3.79
659 660 2.127758 CAACGGTTCGCACTTCGC 60.128 61.111 0.00 0.00 38.27 4.70
660 661 2.586635 AACGGTTCGCACTTCGCA 60.587 55.556 0.00 0.00 42.60 5.10
661 662 2.877974 AACGGTTCGCACTTCGCAC 61.878 57.895 0.00 0.00 42.60 5.34
664 665 3.018973 GTTCGCACTTCGCACCAA 58.981 55.556 0.00 0.00 42.60 3.67
665 666 1.082756 GTTCGCACTTCGCACCAAG 60.083 57.895 0.00 0.00 42.60 3.61
666 667 1.227409 TTCGCACTTCGCACCAAGA 60.227 52.632 0.00 0.00 42.60 3.02
667 668 0.602638 TTCGCACTTCGCACCAAGAT 60.603 50.000 0.00 0.00 42.60 2.40
670 671 1.160137 GCACTTCGCACCAAGATTCT 58.840 50.000 0.00 0.00 41.79 2.40
671 672 1.135859 GCACTTCGCACCAAGATTCTG 60.136 52.381 0.00 0.00 41.79 3.02
672 673 2.146342 CACTTCGCACCAAGATTCTGT 58.854 47.619 0.00 0.00 0.00 3.41
673 674 2.549754 CACTTCGCACCAAGATTCTGTT 59.450 45.455 0.00 0.00 0.00 3.16
675 676 1.808411 TCGCACCAAGATTCTGTTCC 58.192 50.000 0.00 0.00 0.00 3.62
676 677 1.347707 TCGCACCAAGATTCTGTTCCT 59.652 47.619 0.00 0.00 0.00 3.36
677 678 2.154462 CGCACCAAGATTCTGTTCCTT 58.846 47.619 0.00 0.00 0.00 3.36
678 679 2.095567 CGCACCAAGATTCTGTTCCTTG 60.096 50.000 0.00 0.00 37.58 3.61
679 680 2.887152 GCACCAAGATTCTGTTCCTTGT 59.113 45.455 0.00 0.00 36.47 3.16
682 683 5.284079 CACCAAGATTCTGTTCCTTGTTTG 58.716 41.667 0.00 0.00 36.47 2.93
684 685 5.067805 ACCAAGATTCTGTTCCTTGTTTGTC 59.932 40.000 0.00 0.00 36.47 3.18
685 686 5.067674 CCAAGATTCTGTTCCTTGTTTGTCA 59.932 40.000 0.00 0.00 36.47 3.58
686 687 6.239120 CCAAGATTCTGTTCCTTGTTTGTCAT 60.239 38.462 0.00 0.00 36.47 3.06
687 688 6.966534 AGATTCTGTTCCTTGTTTGTCATT 57.033 33.333 0.00 0.00 0.00 2.57
688 689 7.352079 AGATTCTGTTCCTTGTTTGTCATTT 57.648 32.000 0.00 0.00 0.00 2.32
689 690 7.205297 AGATTCTGTTCCTTGTTTGTCATTTG 58.795 34.615 0.00 0.00 0.00 2.32
691 692 6.279513 TCTGTTCCTTGTTTGTCATTTGTT 57.720 33.333 0.00 0.00 0.00 2.83
693 694 7.831753 TCTGTTCCTTGTTTGTCATTTGTTAA 58.168 30.769 0.00 0.00 0.00 2.01
694 695 7.973388 TCTGTTCCTTGTTTGTCATTTGTTAAG 59.027 33.333 0.00 0.00 0.00 1.85
695 696 7.038659 TGTTCCTTGTTTGTCATTTGTTAAGG 58.961 34.615 0.00 0.00 35.83 2.69
696 697 5.596845 TCCTTGTTTGTCATTTGTTAAGGC 58.403 37.500 0.00 0.00 34.80 4.35
702 703 4.481930 TGTCATTTGTTAAGGCGAACAG 57.518 40.909 7.83 0.00 40.31 3.16
794 795 3.282021 TGCATAACCAATTCCTCTGCTC 58.718 45.455 0.00 0.00 0.00 4.26
814 815 0.322322 TGAACTTCCGGCCGTTACAT 59.678 50.000 26.12 7.09 0.00 2.29
815 816 1.270947 TGAACTTCCGGCCGTTACATT 60.271 47.619 26.12 11.50 0.00 2.71
816 817 1.808343 GAACTTCCGGCCGTTACATTT 59.192 47.619 26.12 9.04 0.00 2.32
817 818 2.766345 ACTTCCGGCCGTTACATTTA 57.234 45.000 26.12 0.00 0.00 1.40
843 844 1.535462 ACCGTGTTAAATGAGCTGTGC 59.465 47.619 0.00 0.00 0.00 4.57
897 950 1.609208 ACATGCCACTTTGACCAGAC 58.391 50.000 0.00 0.00 0.00 3.51
898 951 0.518636 CATGCCACTTTGACCAGACG 59.481 55.000 0.00 0.00 0.00 4.18
899 952 0.606401 ATGCCACTTTGACCAGACGG 60.606 55.000 0.00 0.00 38.77 4.79
950 1003 1.880340 GCTCAGGCGACGAGGATTG 60.880 63.158 11.24 0.00 33.49 2.67
951 1004 1.227089 CTCAGGCGACGAGGATTGG 60.227 63.158 0.00 0.00 0.00 3.16
952 1005 1.667154 CTCAGGCGACGAGGATTGGA 61.667 60.000 0.00 0.00 0.00 3.53
954 1007 0.179073 CAGGCGACGAGGATTGGATT 60.179 55.000 0.00 0.00 0.00 3.01
955 1008 1.068588 CAGGCGACGAGGATTGGATTA 59.931 52.381 0.00 0.00 0.00 1.75
956 1009 1.341531 AGGCGACGAGGATTGGATTAG 59.658 52.381 0.00 0.00 0.00 1.73
958 1011 1.605712 GCGACGAGGATTGGATTAGGG 60.606 57.143 0.00 0.00 0.00 3.53
960 1013 1.416401 GACGAGGATTGGATTAGGGCA 59.584 52.381 0.00 0.00 0.00 5.36
961 1014 1.417890 ACGAGGATTGGATTAGGGCAG 59.582 52.381 0.00 0.00 0.00 4.85
962 1015 1.694150 CGAGGATTGGATTAGGGCAGA 59.306 52.381 0.00 0.00 0.00 4.26
963 1016 2.104792 CGAGGATTGGATTAGGGCAGAA 59.895 50.000 0.00 0.00 0.00 3.02
964 1017 3.749226 GAGGATTGGATTAGGGCAGAAG 58.251 50.000 0.00 0.00 0.00 2.85
965 1018 2.158549 AGGATTGGATTAGGGCAGAAGC 60.159 50.000 0.00 0.00 41.10 3.86
1030 1083 2.210116 CCACGTGCAACCTCCATATAC 58.790 52.381 10.91 0.00 0.00 1.47
1040 1093 4.030314 ACCTCCATATACCTCGATCGAA 57.970 45.455 19.92 4.68 0.00 3.71
1061 1114 1.997606 CTAAAACCGGTAAGGCACGAG 59.002 52.381 8.00 0.00 46.52 4.18
1063 1116 2.108278 AAACCGGTAAGGCACGAGCT 62.108 55.000 8.00 0.00 46.52 4.09
1064 1117 1.252904 AACCGGTAAGGCACGAGCTA 61.253 55.000 8.00 0.00 46.52 3.32
1065 1118 1.065928 CCGGTAAGGCACGAGCTAG 59.934 63.158 4.48 0.00 41.70 3.42
1203 1271 3.968568 CCGTCGTCGTGGTGGTGA 61.969 66.667 0.71 0.00 35.01 4.02
1433 1505 4.615949 AGATACATGTCGACTTGATGAGC 58.384 43.478 31.26 19.88 0.00 4.26
1451 1523 3.565902 TGAGCTGATGACGTAGGTATCTG 59.434 47.826 0.00 0.00 0.00 2.90
1465 1537 2.348666 GGTATCTGTACTTTGCTGTGCG 59.651 50.000 0.00 0.00 0.00 5.34
1551 1630 2.343758 GACCAGTCGCTGAAGCCA 59.656 61.111 8.20 0.00 37.91 4.75
1831 3499 1.134877 ACATGATCGCACTCTCAGGTG 60.135 52.381 0.00 0.00 35.31 4.00
1856 3528 5.048852 ACTGAACTAGTACTCGTCAACTTCC 60.049 44.000 0.00 0.00 38.04 3.46
1857 3529 5.068636 TGAACTAGTACTCGTCAACTTCCT 58.931 41.667 0.00 0.00 0.00 3.36
1864 3536 2.383527 CGTCAACTTCCTCTGCGCC 61.384 63.158 4.18 0.00 0.00 6.53
1893 3565 2.279918 ACACGCCGACCTGTTGAC 60.280 61.111 0.00 0.00 0.00 3.18
1894 3566 2.279851 CACGCCGACCTGTTGACA 60.280 61.111 0.00 0.00 0.00 3.58
1895 3567 1.667830 CACGCCGACCTGTTGACAT 60.668 57.895 0.00 0.00 0.00 3.06
1921 3593 3.561213 CTCGCTGGCTGCACGATG 61.561 66.667 16.76 0.00 43.06 3.84
2114 3786 5.341617 GGATTCGACAACTCCTACTACAAG 58.658 45.833 0.00 0.00 0.00 3.16
2367 4039 3.755905 TCAGTTGCTCACACAGTTCAAAA 59.244 39.130 0.00 0.00 0.00 2.44
2368 4040 4.217334 TCAGTTGCTCACACAGTTCAAAAA 59.783 37.500 0.00 0.00 0.00 1.94
2407 4079 4.109766 TGACGCAACTACAATAAGATCGG 58.890 43.478 0.00 0.00 0.00 4.18
2499 4171 5.355596 AGATGTCCTTGACTGATCGAATTC 58.644 41.667 0.00 0.00 33.15 2.17
2509 4181 5.163416 TGACTGATCGAATTCTGATGCCTTA 60.163 40.000 14.65 0.91 0.00 2.69
2511 4183 5.163364 ACTGATCGAATTCTGATGCCTTACT 60.163 40.000 14.65 0.00 0.00 2.24
2518 4190 3.334583 TCTGATGCCTTACTGTTGGAC 57.665 47.619 4.10 0.00 0.00 4.02
2532 4204 4.516698 ACTGTTGGACATGTTGTCTTGATC 59.483 41.667 0.00 0.00 46.19 2.92
2598 4270 5.439721 ACTCCAGCACAAAATAGCATGATA 58.560 37.500 0.00 0.00 0.00 2.15
2885 4565 6.406692 TGTACTACTCCTATGATTCTTGCC 57.593 41.667 0.00 0.00 0.00 4.52
2991 4676 6.676950 TGCTTTCACAAATACATGGTACTTG 58.323 36.000 0.00 0.00 0.00 3.16
3009 4694 2.358322 TGACCACCCTCCAAAAAGAC 57.642 50.000 0.00 0.00 0.00 3.01
3017 4702 1.889170 CCTCCAAAAAGACCTTGCCTC 59.111 52.381 0.00 0.00 0.00 4.70
3039 4724 5.560724 TCTTTTCCTAACAGATCTTGGTGG 58.439 41.667 0.00 0.00 0.00 4.61
3063 4748 3.624861 GTCTAAGGTGACATGGCAATCAG 59.375 47.826 0.58 0.00 36.97 2.90
3074 4759 2.844946 TGGCAATCAGTCAAACTTCGA 58.155 42.857 0.00 0.00 0.00 3.71
3076 4761 2.548057 GGCAATCAGTCAAACTTCGACA 59.452 45.455 0.00 0.00 35.77 4.35
3077 4762 3.189287 GGCAATCAGTCAAACTTCGACAT 59.811 43.478 0.00 0.00 35.77 3.06
3131 4816 4.779386 ACCCCTATGGATGGATTGATACT 58.221 43.478 0.00 0.00 38.00 2.12
3196 4881 1.683917 GGTAGTGCTGATGGAGACGAT 59.316 52.381 0.00 0.00 0.00 3.73
3213 4898 3.535561 ACGATGTTGGATTGAGATGGAC 58.464 45.455 0.00 0.00 0.00 4.02
3227 4912 4.208686 GGACGCGGTGCTAGAGGG 62.209 72.222 12.47 0.00 0.00 4.30
3239 4924 4.525100 GGTGCTAGAGGGAAAGGATAGTAG 59.475 50.000 0.00 0.00 0.00 2.57
3305 5002 8.634335 TCAATCATGGTTAACAAAGAAGATGA 57.366 30.769 8.10 3.31 0.00 2.92
3316 5013 6.232581 ACAAAGAAGATGAGGTCCTAGATG 57.767 41.667 0.00 0.00 0.00 2.90
3319 5016 4.222336 AGAAGATGAGGTCCTAGATGTGG 58.778 47.826 0.00 0.00 0.00 4.17
3320 5017 3.981516 AGATGAGGTCCTAGATGTGGA 57.018 47.619 0.00 0.00 0.00 4.02
3332 5029 2.065799 AGATGTGGACCCTTTGTTCCT 58.934 47.619 0.00 0.00 0.00 3.36
3333 5030 2.447047 AGATGTGGACCCTTTGTTCCTT 59.553 45.455 0.00 0.00 0.00 3.36
3334 5031 2.065899 TGTGGACCCTTTGTTCCTTG 57.934 50.000 0.00 0.00 0.00 3.61
3341 5038 2.291930 ACCCTTTGTTCCTTGTTGGTGA 60.292 45.455 0.00 0.00 37.07 4.02
3342 5039 2.965147 CCCTTTGTTCCTTGTTGGTGAT 59.035 45.455 0.00 0.00 37.07 3.06
3353 5050 5.061853 CCTTGTTGGTGATGGATCTATGAG 58.938 45.833 0.00 0.00 0.00 2.90
3358 5055 3.323115 TGGTGATGGATCTATGAGCTCAC 59.677 47.826 20.97 5.55 0.00 3.51
3359 5056 3.573598 GTGATGGATCTATGAGCTCACG 58.426 50.000 20.97 13.51 0.00 4.35
3360 5057 3.005261 GTGATGGATCTATGAGCTCACGT 59.995 47.826 20.97 6.84 0.00 4.49
3361 5058 3.005155 TGATGGATCTATGAGCTCACGTG 59.995 47.826 20.97 9.94 0.00 4.49
3362 5059 1.067669 TGGATCTATGAGCTCACGTGC 59.932 52.381 20.97 10.93 0.00 5.34
3363 5060 1.403493 GATCTATGAGCTCACGTGCG 58.597 55.000 20.97 5.77 38.13 5.34
3364 5061 0.596083 ATCTATGAGCTCACGTGCGC 60.596 55.000 22.45 22.45 38.13 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.834447 TTCTCACACCGCACGACCG 62.834 63.158 0.00 0.00 0.00 4.79
4 5 2.022129 GACCTTCTCACACCGCACG 61.022 63.158 0.00 0.00 0.00 5.34
5 6 2.022129 CGACCTTCTCACACCGCAC 61.022 63.158 0.00 0.00 0.00 5.34
6 7 2.142357 CTCGACCTTCTCACACCGCA 62.142 60.000 0.00 0.00 0.00 5.69
7 8 1.444553 CTCGACCTTCTCACACCGC 60.445 63.158 0.00 0.00 0.00 5.68
8 9 0.109689 GACTCGACCTTCTCACACCG 60.110 60.000 0.00 0.00 0.00 4.94
9 10 1.068194 CAGACTCGACCTTCTCACACC 60.068 57.143 0.00 0.00 0.00 4.16
10 11 1.667467 GCAGACTCGACCTTCTCACAC 60.667 57.143 0.00 0.00 0.00 3.82
11 12 0.598562 GCAGACTCGACCTTCTCACA 59.401 55.000 0.00 0.00 0.00 3.58
12 13 0.885196 AGCAGACTCGACCTTCTCAC 59.115 55.000 0.00 0.00 0.00 3.51
14 15 0.172352 CCAGCAGACTCGACCTTCTC 59.828 60.000 0.00 0.00 0.00 2.87
15 16 1.254284 CCCAGCAGACTCGACCTTCT 61.254 60.000 0.00 0.00 0.00 2.85
17 18 2.286523 CCCCAGCAGACTCGACCTT 61.287 63.158 0.00 0.00 0.00 3.50
18 19 2.681778 CCCCAGCAGACTCGACCT 60.682 66.667 0.00 0.00 0.00 3.85
20 21 0.034896 TTTTCCCCAGCAGACTCGAC 59.965 55.000 0.00 0.00 0.00 4.20
21 22 0.321671 CTTTTCCCCAGCAGACTCGA 59.678 55.000 0.00 0.00 0.00 4.04
22 23 1.301677 GCTTTTCCCCAGCAGACTCG 61.302 60.000 0.00 0.00 37.22 4.18
23 24 0.250901 TGCTTTTCCCCAGCAGACTC 60.251 55.000 0.00 0.00 42.49 3.36
24 25 1.846261 TGCTTTTCCCCAGCAGACT 59.154 52.632 0.00 0.00 42.49 3.24
31 32 2.597217 CACCGCTGCTTTTCCCCA 60.597 61.111 0.00 0.00 0.00 4.96
33 34 4.056125 GCCACCGCTGCTTTTCCC 62.056 66.667 0.00 0.00 0.00 3.97
34 35 4.404654 CGCCACCGCTGCTTTTCC 62.405 66.667 0.00 0.00 0.00 3.13
35 36 3.660111 ACGCCACCGCTGCTTTTC 61.660 61.111 0.00 0.00 38.22 2.29
36 37 3.964875 CACGCCACCGCTGCTTTT 61.965 61.111 0.00 0.00 38.22 2.27
59 60 2.395690 GATTCGAGCCGCACAACG 59.604 61.111 0.00 0.00 43.15 4.10
61 62 2.813474 CGGATTCGAGCCGCACAA 60.813 61.111 14.52 0.00 42.55 3.33
86 87 1.972660 GAGTTCCTCCCACCATCCCG 61.973 65.000 0.00 0.00 0.00 5.14
87 88 0.914417 TGAGTTCCTCCCACCATCCC 60.914 60.000 0.00 0.00 0.00 3.85
89 90 2.879103 TTTGAGTTCCTCCCACCATC 57.121 50.000 0.00 0.00 0.00 3.51
90 91 2.649312 TGATTTGAGTTCCTCCCACCAT 59.351 45.455 0.00 0.00 0.00 3.55
91 92 2.061848 TGATTTGAGTTCCTCCCACCA 58.938 47.619 0.00 0.00 0.00 4.17
92 93 2.879103 TGATTTGAGTTCCTCCCACC 57.121 50.000 0.00 0.00 0.00 4.61
94 95 2.726821 GCATGATTTGAGTTCCTCCCA 58.273 47.619 0.00 0.00 0.00 4.37
95 96 1.672881 CGCATGATTTGAGTTCCTCCC 59.327 52.381 0.00 0.00 0.00 4.30
96 97 1.672881 CCGCATGATTTGAGTTCCTCC 59.327 52.381 0.00 0.00 0.00 4.30
97 98 2.096496 CACCGCATGATTTGAGTTCCTC 59.904 50.000 0.00 0.00 0.00 3.71
101 102 0.527565 GCCACCGCATGATTTGAGTT 59.472 50.000 0.00 0.00 34.03 3.01
102 103 0.608856 TGCCACCGCATGATTTGAGT 60.609 50.000 0.00 0.00 41.12 3.41
103 104 0.527113 TTGCCACCGCATGATTTGAG 59.473 50.000 0.00 0.00 46.67 3.02
104 105 1.184431 ATTGCCACCGCATGATTTGA 58.816 45.000 0.00 0.00 46.67 2.69
106 107 1.469595 CGAATTGCCACCGCATGATTT 60.470 47.619 0.00 0.00 46.67 2.17
107 108 0.101040 CGAATTGCCACCGCATGATT 59.899 50.000 0.00 0.00 46.67 2.57
108 109 1.727511 CCGAATTGCCACCGCATGAT 61.728 55.000 0.00 0.00 46.67 2.45
109 110 2.405805 CCGAATTGCCACCGCATGA 61.406 57.895 0.00 0.00 46.67 3.07
111 112 3.825611 GCCGAATTGCCACCGCAT 61.826 61.111 0.00 0.00 46.67 4.73
217 218 4.680237 TGTCCCGCCGCACTTCTG 62.680 66.667 0.00 0.00 0.00 3.02
218 219 4.379243 CTGTCCCGCCGCACTTCT 62.379 66.667 0.00 0.00 0.00 2.85
220 221 4.681978 GTCTGTCCCGCCGCACTT 62.682 66.667 0.00 0.00 0.00 3.16
224 225 3.876589 TTTGAGTCTGTCCCGCCGC 62.877 63.158 0.00 0.00 0.00 6.53
225 226 1.079127 ATTTGAGTCTGTCCCGCCG 60.079 57.895 0.00 0.00 0.00 6.46
227 228 1.363744 CAGATTTGAGTCTGTCCCGC 58.636 55.000 0.00 0.00 40.54 6.13
230 231 1.736681 GCTGCAGATTTGAGTCTGTCC 59.263 52.381 20.43 0.00 45.80 4.02
233 234 2.008329 GGAGCTGCAGATTTGAGTCTG 58.992 52.381 20.43 0.00 46.59 3.51
235 236 2.278854 GAGGAGCTGCAGATTTGAGTC 58.721 52.381 20.43 0.00 0.00 3.36
236 237 1.405256 CGAGGAGCTGCAGATTTGAGT 60.405 52.381 20.43 0.00 0.00 3.41
237 238 1.288350 CGAGGAGCTGCAGATTTGAG 58.712 55.000 20.43 0.58 0.00 3.02
238 239 0.107993 CCGAGGAGCTGCAGATTTGA 60.108 55.000 20.43 0.00 0.00 2.69
239 240 1.712977 GCCGAGGAGCTGCAGATTTG 61.713 60.000 20.43 0.06 0.00 2.32
240 241 1.451028 GCCGAGGAGCTGCAGATTT 60.451 57.895 20.43 3.32 0.00 2.17
241 242 2.188994 GCCGAGGAGCTGCAGATT 59.811 61.111 20.43 4.00 0.00 2.40
242 243 4.218578 CGCCGAGGAGCTGCAGAT 62.219 66.667 20.43 12.64 0.00 2.90
274 275 3.662117 GACCCCACCTGCAATCCCC 62.662 68.421 0.00 0.00 0.00 4.81
275 276 2.043953 GACCCCACCTGCAATCCC 60.044 66.667 0.00 0.00 0.00 3.85
276 277 1.678970 GTGACCCCACCTGCAATCC 60.679 63.158 0.00 0.00 37.33 3.01
277 278 2.040544 CGTGACCCCACCTGCAATC 61.041 63.158 0.00 0.00 40.12 2.67
278 279 2.034066 CGTGACCCCACCTGCAAT 59.966 61.111 0.00 0.00 40.12 3.56
279 280 4.263572 CCGTGACCCCACCTGCAA 62.264 66.667 0.00 0.00 40.12 4.08
292 293 4.838152 CATCCTGACCCCGCCGTG 62.838 72.222 0.00 0.00 0.00 4.94
296 297 1.910580 TTCTTCCATCCTGACCCCGC 61.911 60.000 0.00 0.00 0.00 6.13
297 298 0.618458 TTTCTTCCATCCTGACCCCG 59.382 55.000 0.00 0.00 0.00 5.73
299 300 1.064389 CCCTTTCTTCCATCCTGACCC 60.064 57.143 0.00 0.00 0.00 4.46
300 301 1.683319 GCCCTTTCTTCCATCCTGACC 60.683 57.143 0.00 0.00 0.00 4.02
301 302 1.756430 GCCCTTTCTTCCATCCTGAC 58.244 55.000 0.00 0.00 0.00 3.51
303 304 0.749454 CCGCCCTTTCTTCCATCCTG 60.749 60.000 0.00 0.00 0.00 3.86
305 306 2.121538 GCCGCCCTTTCTTCCATCC 61.122 63.158 0.00 0.00 0.00 3.51
306 307 2.472909 CGCCGCCCTTTCTTCCATC 61.473 63.158 0.00 0.00 0.00 3.51
308 309 4.715523 CCGCCGCCCTTTCTTCCA 62.716 66.667 0.00 0.00 0.00 3.53
309 310 4.717313 ACCGCCGCCCTTTCTTCC 62.717 66.667 0.00 0.00 0.00 3.46
310 311 3.431725 CACCGCCGCCCTTTCTTC 61.432 66.667 0.00 0.00 0.00 2.87
311 312 3.948719 TCACCGCCGCCCTTTCTT 61.949 61.111 0.00 0.00 0.00 2.52
314 315 3.860930 ATTGTCACCGCCGCCCTTT 62.861 57.895 0.00 0.00 0.00 3.11
315 316 4.344865 ATTGTCACCGCCGCCCTT 62.345 61.111 0.00 0.00 0.00 3.95
320 321 0.724453 CGAAAACATTGTCACCGCCG 60.724 55.000 0.00 0.00 0.00 6.46
321 322 0.386731 CCGAAAACATTGTCACCGCC 60.387 55.000 0.00 0.00 0.00 6.13
323 324 0.386731 GGCCGAAAACATTGTCACCG 60.387 55.000 0.00 0.00 0.00 4.94
327 328 3.363341 TTTCTGGCCGAAAACATTGTC 57.637 42.857 16.86 0.00 38.62 3.18
329 330 2.916716 CGATTTCTGGCCGAAAACATTG 59.083 45.455 21.07 9.58 44.25 2.82
330 331 2.671070 GCGATTTCTGGCCGAAAACATT 60.671 45.455 21.07 9.27 44.25 2.71
332 333 0.239879 GCGATTTCTGGCCGAAAACA 59.760 50.000 21.07 5.16 44.25 2.83
334 335 1.880186 GGCGATTTCTGGCCGAAAA 59.120 52.632 21.07 14.01 44.25 2.29
335 336 3.585856 GGCGATTTCTGGCCGAAA 58.414 55.556 20.00 20.00 45.08 3.46
366 367 1.627864 TTTTAGTTTCCCTGCCTGCC 58.372 50.000 0.00 0.00 0.00 4.85
367 368 2.825532 TCATTTTAGTTTCCCTGCCTGC 59.174 45.455 0.00 0.00 0.00 4.85
368 369 4.619160 GCTTCATTTTAGTTTCCCTGCCTG 60.619 45.833 0.00 0.00 0.00 4.85
369 370 3.511540 GCTTCATTTTAGTTTCCCTGCCT 59.488 43.478 0.00 0.00 0.00 4.75
370 371 3.673323 CGCTTCATTTTAGTTTCCCTGCC 60.673 47.826 0.00 0.00 0.00 4.85
371 372 3.501950 CGCTTCATTTTAGTTTCCCTGC 58.498 45.455 0.00 0.00 0.00 4.85
372 373 3.673323 GCCGCTTCATTTTAGTTTCCCTG 60.673 47.826 0.00 0.00 0.00 4.45
374 375 2.731027 CGCCGCTTCATTTTAGTTTCCC 60.731 50.000 0.00 0.00 0.00 3.97
375 376 2.515912 CGCCGCTTCATTTTAGTTTCC 58.484 47.619 0.00 0.00 0.00 3.13
376 377 1.911464 GCGCCGCTTCATTTTAGTTTC 59.089 47.619 0.00 0.00 0.00 2.78
378 379 1.165270 AGCGCCGCTTCATTTTAGTT 58.835 45.000 5.39 0.00 33.89 2.24
380 381 1.135689 ACAAGCGCCGCTTCATTTTAG 60.136 47.619 23.32 11.43 46.77 1.85
381 382 0.878416 ACAAGCGCCGCTTCATTTTA 59.122 45.000 23.32 0.00 46.77 1.52
382 383 0.387239 GACAAGCGCCGCTTCATTTT 60.387 50.000 23.32 3.68 46.77 1.82
383 384 1.210155 GACAAGCGCCGCTTCATTT 59.790 52.632 23.32 6.42 46.77 2.32
384 385 1.965930 TGACAAGCGCCGCTTCATT 60.966 52.632 23.32 9.21 46.77 2.57
385 386 2.358615 TGACAAGCGCCGCTTCAT 60.359 55.556 23.32 13.39 46.77 2.57
389 390 3.425713 CATGTGACAAGCGCCGCT 61.426 61.111 5.39 5.39 42.56 5.52
390 391 3.422303 TCATGTGACAAGCGCCGC 61.422 61.111 2.29 0.00 0.00 6.53
391 392 2.476051 GTCATGTGACAAGCGCCG 59.524 61.111 2.29 0.00 44.18 6.46
399 400 5.700832 TGATGTAAAACTCCAGTCATGTGAC 59.299 40.000 5.01 5.01 45.08 3.67
401 402 5.106555 GGTGATGTAAAACTCCAGTCATGTG 60.107 44.000 0.00 0.00 0.00 3.21
402 403 5.003804 GGTGATGTAAAACTCCAGTCATGT 58.996 41.667 0.00 0.00 0.00 3.21
403 404 5.248640 AGGTGATGTAAAACTCCAGTCATG 58.751 41.667 0.00 0.00 0.00 3.07
404 405 5.491982 GAGGTGATGTAAAACTCCAGTCAT 58.508 41.667 0.00 0.00 0.00 3.06
405 406 4.560716 CGAGGTGATGTAAAACTCCAGTCA 60.561 45.833 0.00 0.00 0.00 3.41
406 407 3.927142 CGAGGTGATGTAAAACTCCAGTC 59.073 47.826 0.00 0.00 0.00 3.51
407 408 3.306780 CCGAGGTGATGTAAAACTCCAGT 60.307 47.826 0.00 0.00 0.00 4.00
408 409 3.056107 TCCGAGGTGATGTAAAACTCCAG 60.056 47.826 0.00 0.00 0.00 3.86
410 411 3.604875 TCCGAGGTGATGTAAAACTCC 57.395 47.619 0.00 0.00 0.00 3.85
419 420 1.208052 ACCTTCACATCCGAGGTGATG 59.792 52.381 16.11 16.98 44.11 3.07
420 421 1.573108 ACCTTCACATCCGAGGTGAT 58.427 50.000 16.11 0.00 44.11 3.06
421 422 3.067011 ACCTTCACATCCGAGGTGA 57.933 52.632 11.74 11.74 42.04 4.02
423 424 1.296715 GCACCTTCACATCCGAGGT 59.703 57.895 0.00 0.00 44.39 3.85
424 425 0.321564 TTGCACCTTCACATCCGAGG 60.322 55.000 0.00 0.00 36.62 4.63
425 426 1.522668 TTTGCACCTTCACATCCGAG 58.477 50.000 0.00 0.00 0.00 4.63
426 427 2.198827 ATTTGCACCTTCACATCCGA 57.801 45.000 0.00 0.00 0.00 4.55
427 428 2.988493 CAAATTTGCACCTTCACATCCG 59.012 45.455 5.01 0.00 0.00 4.18
428 429 3.993920 ACAAATTTGCACCTTCACATCC 58.006 40.909 18.12 0.00 0.00 3.51
429 430 6.624423 AGATACAAATTTGCACCTTCACATC 58.376 36.000 18.12 7.03 0.00 3.06
431 432 5.048083 GGAGATACAAATTTGCACCTTCACA 60.048 40.000 18.12 0.00 0.00 3.58
432 433 5.048083 TGGAGATACAAATTTGCACCTTCAC 60.048 40.000 18.12 6.68 0.00 3.18
435 436 6.418057 TTTGGAGATACAAATTTGCACCTT 57.582 33.333 18.12 0.78 35.57 3.50
437 438 6.165577 ACATTTGGAGATACAAATTTGCACC 58.834 36.000 18.12 13.53 45.94 5.01
438 439 7.171337 ACAACATTTGGAGATACAAATTTGCAC 59.829 33.333 18.12 9.48 45.94 4.57
439 440 7.215789 ACAACATTTGGAGATACAAATTTGCA 58.784 30.769 18.12 5.75 45.94 4.08
440 441 7.656707 ACAACATTTGGAGATACAAATTTGC 57.343 32.000 18.12 2.19 45.94 3.68
441 442 9.689976 TGTACAACATTTGGAGATACAAATTTG 57.310 29.630 16.67 16.67 45.94 2.32
446 447 7.882791 AGTGATGTACAACATTTGGAGATACAA 59.117 33.333 9.21 0.00 39.27 2.41
451 452 6.212589 TCCTAGTGATGTACAACATTTGGAGA 59.787 38.462 21.00 6.94 39.27 3.71
452 453 6.406370 TCCTAGTGATGTACAACATTTGGAG 58.594 40.000 21.00 8.22 39.27 3.86
453 454 6.367374 TCCTAGTGATGTACAACATTTGGA 57.633 37.500 21.00 21.00 39.27 3.53
454 455 5.586243 CCTCCTAGTGATGTACAACATTTGG 59.414 44.000 17.97 17.97 39.27 3.28
455 456 6.406370 TCCTCCTAGTGATGTACAACATTTG 58.594 40.000 9.21 6.15 39.27 2.32
456 457 6.352222 CCTCCTCCTAGTGATGTACAACATTT 60.352 42.308 9.21 4.05 39.27 2.32
460 461 4.024670 ACCTCCTCCTAGTGATGTACAAC 58.975 47.826 0.00 0.00 0.00 3.32
461 462 4.023980 CACCTCCTCCTAGTGATGTACAA 58.976 47.826 0.00 0.00 33.21 2.41
462 463 3.268595 TCACCTCCTCCTAGTGATGTACA 59.731 47.826 0.00 0.00 35.67 2.90
469 470 2.739943 TCACATCACCTCCTCCTAGTG 58.260 52.381 0.00 0.00 0.00 2.74
470 471 3.697190 ATCACATCACCTCCTCCTAGT 57.303 47.619 0.00 0.00 0.00 2.57
502 503 2.614481 GCTCCAACGGGTGTAGATGAAA 60.614 50.000 0.00 0.00 34.93 2.69
506 507 1.255667 ACGCTCCAACGGGTGTAGAT 61.256 55.000 0.00 0.00 37.37 1.98
507 508 1.466025 AACGCTCCAACGGGTGTAGA 61.466 55.000 0.00 0.00 37.37 2.59
508 509 0.601841 AAACGCTCCAACGGGTGTAG 60.602 55.000 0.00 0.00 37.37 2.74
509 510 0.179051 AAAACGCTCCAACGGGTGTA 60.179 50.000 0.00 0.00 37.37 2.90
510 511 1.033202 AAAAACGCTCCAACGGGTGT 61.033 50.000 0.00 0.00 37.37 4.16
511 512 1.731093 AAAAACGCTCCAACGGGTG 59.269 52.632 0.00 0.00 37.37 4.61
512 513 4.246053 AAAAACGCTCCAACGGGT 57.754 50.000 0.00 0.00 37.37 5.28
527 528 3.766068 TTTGCATCATGAAGGCCAAAA 57.234 38.095 17.12 10.64 0.00 2.44
528 529 3.071312 ACTTTTGCATCATGAAGGCCAAA 59.929 39.130 17.12 16.57 0.00 3.28
529 530 2.633967 ACTTTTGCATCATGAAGGCCAA 59.366 40.909 17.12 11.31 0.00 4.52
530 531 2.250031 ACTTTTGCATCATGAAGGCCA 58.750 42.857 17.12 6.38 0.00 5.36
531 532 3.323751 AACTTTTGCATCATGAAGGCC 57.676 42.857 17.12 0.00 0.00 5.19
532 533 4.060205 ACAAACTTTTGCATCATGAAGGC 58.940 39.130 14.03 14.03 41.79 4.35
536 537 9.932699 CAAAATTAACAAACTTTTGCATCATGA 57.067 25.926 0.00 0.00 41.79 3.07
583 584 5.626955 GCTTTTGTGAGTTGTTAAGAGCATC 59.373 40.000 0.00 0.00 0.00 3.91
584 585 5.523369 GCTTTTGTGAGTTGTTAAGAGCAT 58.477 37.500 0.00 0.00 0.00 3.79
585 586 4.495679 CGCTTTTGTGAGTTGTTAAGAGCA 60.496 41.667 0.00 0.00 0.00 4.26
586 587 3.968724 CGCTTTTGTGAGTTGTTAAGAGC 59.031 43.478 0.00 0.00 0.00 4.09
587 588 5.198274 GTCGCTTTTGTGAGTTGTTAAGAG 58.802 41.667 0.00 0.00 39.92 2.85
588 589 4.034742 GGTCGCTTTTGTGAGTTGTTAAGA 59.965 41.667 0.00 0.00 39.92 2.10
589 590 4.201871 TGGTCGCTTTTGTGAGTTGTTAAG 60.202 41.667 0.00 0.00 39.92 1.85
592 593 2.088423 TGGTCGCTTTTGTGAGTTGTT 58.912 42.857 0.00 0.00 39.92 2.83
593 594 1.400494 GTGGTCGCTTTTGTGAGTTGT 59.600 47.619 0.00 0.00 39.92 3.32
595 596 1.745232 TGTGGTCGCTTTTGTGAGTT 58.255 45.000 0.00 0.00 39.92 3.01
596 597 1.400494 GTTGTGGTCGCTTTTGTGAGT 59.600 47.619 0.00 0.00 39.92 3.41
597 598 1.670811 AGTTGTGGTCGCTTTTGTGAG 59.329 47.619 0.00 0.00 39.92 3.51
599 600 3.311322 TCTTAGTTGTGGTCGCTTTTGTG 59.689 43.478 0.00 0.00 0.00 3.33
600 601 3.537580 TCTTAGTTGTGGTCGCTTTTGT 58.462 40.909 0.00 0.00 0.00 2.83
602 603 4.385825 TCATCTTAGTTGTGGTCGCTTTT 58.614 39.130 0.00 0.00 0.00 2.27
603 604 4.002906 TCATCTTAGTTGTGGTCGCTTT 57.997 40.909 0.00 0.00 0.00 3.51
604 605 3.678056 TCATCTTAGTTGTGGTCGCTT 57.322 42.857 0.00 0.00 0.00 4.68
605 606 3.258372 TCTTCATCTTAGTTGTGGTCGCT 59.742 43.478 0.00 0.00 0.00 4.93
607 608 5.063944 CCAATCTTCATCTTAGTTGTGGTCG 59.936 44.000 0.00 0.00 0.00 4.79
608 609 5.355350 CCCAATCTTCATCTTAGTTGTGGTC 59.645 44.000 0.00 0.00 0.00 4.02
609 610 5.222130 ACCCAATCTTCATCTTAGTTGTGGT 60.222 40.000 0.00 0.00 0.00 4.16
610 611 5.124457 CACCCAATCTTCATCTTAGTTGTGG 59.876 44.000 0.00 0.00 0.00 4.17
611 612 5.124457 CCACCCAATCTTCATCTTAGTTGTG 59.876 44.000 0.00 0.00 0.00 3.33
612 613 5.014123 TCCACCCAATCTTCATCTTAGTTGT 59.986 40.000 0.00 0.00 0.00 3.32
613 614 5.500234 TCCACCCAATCTTCATCTTAGTTG 58.500 41.667 0.00 0.00 0.00 3.16
615 616 4.785376 ACTCCACCCAATCTTCATCTTAGT 59.215 41.667 0.00 0.00 0.00 2.24
617 618 4.626287 GCACTCCACCCAATCTTCATCTTA 60.626 45.833 0.00 0.00 0.00 2.10
620 621 2.019984 GCACTCCACCCAATCTTCATC 58.980 52.381 0.00 0.00 0.00 2.92
621 622 1.341383 GGCACTCCACCCAATCTTCAT 60.341 52.381 0.00 0.00 0.00 2.57
622 623 0.038166 GGCACTCCACCCAATCTTCA 59.962 55.000 0.00 0.00 0.00 3.02
623 624 2.873797 GGCACTCCACCCAATCTTC 58.126 57.895 0.00 0.00 0.00 2.87
633 634 2.112297 GAACCGTTGGGCACTCCA 59.888 61.111 0.00 0.00 45.43 3.86
634 635 3.047877 CGAACCGTTGGGCACTCC 61.048 66.667 0.00 0.00 36.48 3.85
635 636 3.723348 GCGAACCGTTGGGCACTC 61.723 66.667 0.00 0.00 36.48 3.51
636 637 4.555709 TGCGAACCGTTGGGCACT 62.556 61.111 3.14 0.00 36.48 4.40
638 639 4.555709 AGTGCGAACCGTTGGGCA 62.556 61.111 0.00 3.14 36.48 5.36
639 640 3.249973 GAAGTGCGAACCGTTGGGC 62.250 63.158 0.00 0.00 36.48 5.36
640 641 2.943653 GAAGTGCGAACCGTTGGG 59.056 61.111 0.00 0.00 40.11 4.12
641 642 2.549282 CGAAGTGCGAACCGTTGG 59.451 61.111 0.00 0.00 44.57 3.77
642 643 2.127758 GCGAAGTGCGAACCGTTG 60.128 61.111 0.00 0.00 44.57 4.10
651 652 1.135859 CAGAATCTTGGTGCGAAGTGC 60.136 52.381 0.00 0.00 46.70 4.40
652 653 2.146342 ACAGAATCTTGGTGCGAAGTG 58.854 47.619 0.00 0.00 0.00 3.16
654 655 2.160417 GGAACAGAATCTTGGTGCGAAG 59.840 50.000 0.00 0.00 0.00 3.79
655 656 2.151202 GGAACAGAATCTTGGTGCGAA 58.849 47.619 0.00 0.00 0.00 4.70
656 657 1.347707 AGGAACAGAATCTTGGTGCGA 59.652 47.619 0.00 0.00 30.60 5.10
657 658 1.813513 AGGAACAGAATCTTGGTGCG 58.186 50.000 0.00 0.00 30.60 5.34
658 659 2.887152 ACAAGGAACAGAATCTTGGTGC 59.113 45.455 0.00 0.00 41.35 5.01
659 660 5.163519 ACAAACAAGGAACAGAATCTTGGTG 60.164 40.000 0.00 0.00 41.35 4.17
660 661 4.956075 ACAAACAAGGAACAGAATCTTGGT 59.044 37.500 0.00 0.00 41.35 3.67
661 662 5.067674 TGACAAACAAGGAACAGAATCTTGG 59.932 40.000 0.00 0.00 41.35 3.61
662 663 6.135290 TGACAAACAAGGAACAGAATCTTG 57.865 37.500 0.00 0.00 42.37 3.02
663 664 6.966534 ATGACAAACAAGGAACAGAATCTT 57.033 33.333 0.00 0.00 0.00 2.40
664 665 6.966534 AATGACAAACAAGGAACAGAATCT 57.033 33.333 0.00 0.00 0.00 2.40
665 666 6.980397 ACAAATGACAAACAAGGAACAGAATC 59.020 34.615 0.00 0.00 0.00 2.52
666 667 6.877236 ACAAATGACAAACAAGGAACAGAAT 58.123 32.000 0.00 0.00 0.00 2.40
667 668 6.279513 ACAAATGACAAACAAGGAACAGAA 57.720 33.333 0.00 0.00 0.00 3.02
670 671 7.038659 CCTTAACAAATGACAAACAAGGAACA 58.961 34.615 0.00 0.00 34.50 3.18
671 672 6.019075 GCCTTAACAAATGACAAACAAGGAAC 60.019 38.462 0.00 0.00 34.50 3.62
672 673 6.045955 GCCTTAACAAATGACAAACAAGGAA 58.954 36.000 0.00 0.00 34.50 3.36
673 674 5.596845 GCCTTAACAAATGACAAACAAGGA 58.403 37.500 0.00 0.00 34.50 3.36
675 676 5.277825 TCGCCTTAACAAATGACAAACAAG 58.722 37.500 0.00 0.00 0.00 3.16
676 677 5.250235 TCGCCTTAACAAATGACAAACAA 57.750 34.783 0.00 0.00 0.00 2.83
677 678 4.902443 TCGCCTTAACAAATGACAAACA 57.098 36.364 0.00 0.00 0.00 2.83
678 679 5.038033 TGTTCGCCTTAACAAATGACAAAC 58.962 37.500 0.00 0.00 36.45 2.93
679 680 5.250235 TGTTCGCCTTAACAAATGACAAA 57.750 34.783 0.00 0.00 36.45 2.83
682 683 3.234386 GCTGTTCGCCTTAACAAATGAC 58.766 45.455 0.00 0.00 38.81 3.06
684 685 2.241722 CGCTGTTCGCCTTAACAAATG 58.758 47.619 0.00 0.00 38.81 2.32
685 686 1.877443 ACGCTGTTCGCCTTAACAAAT 59.123 42.857 0.00 0.00 43.23 2.32
686 687 1.301423 ACGCTGTTCGCCTTAACAAA 58.699 45.000 0.00 0.00 43.23 2.83
687 688 1.794116 GTACGCTGTTCGCCTTAACAA 59.206 47.619 0.00 0.00 43.23 2.83
688 689 1.000060 AGTACGCTGTTCGCCTTAACA 60.000 47.619 0.00 0.00 43.23 2.41
689 690 1.389106 CAGTACGCTGTTCGCCTTAAC 59.611 52.381 0.00 0.00 43.23 2.01
691 692 0.108992 CCAGTACGCTGTTCGCCTTA 60.109 55.000 0.00 0.00 43.23 2.69
693 694 2.261671 CCAGTACGCTGTTCGCCT 59.738 61.111 0.00 0.00 43.23 5.52
694 695 3.488090 GCCAGTACGCTGTTCGCC 61.488 66.667 0.00 0.00 43.23 5.54
695 696 2.432628 AGCCAGTACGCTGTTCGC 60.433 61.111 0.00 0.00 43.23 4.70
702 703 0.246635 TCCTTCTTCAGCCAGTACGC 59.753 55.000 0.00 0.00 0.00 4.42
704 705 3.330267 CTGTTCCTTCTTCAGCCAGTAC 58.670 50.000 0.00 0.00 0.00 2.73
711 712 2.447244 ACGAGCTGTTCCTTCTTCAG 57.553 50.000 0.00 0.00 0.00 3.02
794 795 0.320073 TGTAACGGCCGGAAGTTCAG 60.320 55.000 31.76 0.00 0.00 3.02
814 815 6.651643 AGCTCATTTAACACGGTGTGTATAAA 59.348 34.615 15.53 15.33 46.79 1.40
815 816 6.091577 CAGCTCATTTAACACGGTGTGTATAA 59.908 38.462 15.53 7.15 46.79 0.98
816 817 5.579119 CAGCTCATTTAACACGGTGTGTATA 59.421 40.000 15.53 0.46 46.79 1.47
817 818 4.391830 CAGCTCATTTAACACGGTGTGTAT 59.608 41.667 15.53 5.93 46.79 2.29
843 844 1.012086 CTCGTGCATGGTGATCAAGG 58.988 55.000 5.98 0.00 0.00 3.61
866 867 0.756294 TGGCATGTACGTAGGGGATG 59.244 55.000 0.00 0.00 0.00 3.51
899 952 2.034221 GCCACTTGGGGTCTGGAC 59.966 66.667 0.00 0.00 37.04 4.02
900 953 1.650242 TTTGCCACTTGGGGTCTGGA 61.650 55.000 0.00 0.00 37.04 3.86
901 954 0.542702 ATTTGCCACTTGGGGTCTGG 60.543 55.000 0.00 0.00 37.04 3.86
902 955 2.214376 TATTTGCCACTTGGGGTCTG 57.786 50.000 0.00 0.00 37.04 3.51
903 956 2.582636 AGATATTTGCCACTTGGGGTCT 59.417 45.455 0.00 0.00 37.04 3.85
904 957 3.018423 AGATATTTGCCACTTGGGGTC 57.982 47.619 0.00 0.00 37.04 4.46
937 990 1.605712 CCTAATCCAATCCTCGTCGCC 60.606 57.143 0.00 0.00 0.00 5.54
941 994 1.417890 CTGCCCTAATCCAATCCTCGT 59.582 52.381 0.00 0.00 0.00 4.18
958 1011 1.741770 CCGGTAGTGTGGCTTCTGC 60.742 63.158 0.00 0.00 38.76 4.26
960 1013 0.824759 GATCCGGTAGTGTGGCTTCT 59.175 55.000 0.00 0.00 0.00 2.85
961 1014 0.535335 TGATCCGGTAGTGTGGCTTC 59.465 55.000 0.00 0.00 0.00 3.86
962 1015 0.537188 CTGATCCGGTAGTGTGGCTT 59.463 55.000 0.00 0.00 0.00 4.35
963 1016 0.614979 ACTGATCCGGTAGTGTGGCT 60.615 55.000 0.00 0.00 0.00 4.75
964 1017 0.179108 GACTGATCCGGTAGTGTGGC 60.179 60.000 12.25 0.00 0.00 5.01
965 1018 0.100682 CGACTGATCCGGTAGTGTGG 59.899 60.000 12.25 1.85 0.00 4.17
966 1019 0.100682 CCGACTGATCCGGTAGTGTG 59.899 60.000 12.25 6.04 41.91 3.82
967 1020 2.490165 CCGACTGATCCGGTAGTGT 58.510 57.895 12.25 3.53 41.91 3.55
1030 1083 2.190981 CCGGTTTTAGTTCGATCGAGG 58.809 52.381 18.54 8.81 0.00 4.63
1040 1093 1.344114 TCGTGCCTTACCGGTTTTAGT 59.656 47.619 15.04 0.00 34.25 2.24
1087 1151 1.871772 CCTTTGCGTGCTCTTCCAG 59.128 57.895 0.00 0.00 0.00 3.86
1135 1200 1.464376 CGCCATGGGTCTATCGGTCT 61.464 60.000 15.13 0.00 0.00 3.85
1137 1202 1.046472 TTCGCCATGGGTCTATCGGT 61.046 55.000 15.13 0.00 0.00 4.69
1143 1208 1.377725 CAAGCTTCGCCATGGGTCT 60.378 57.895 15.13 1.10 0.00 3.85
1313 1381 2.510906 CCCGCGGAGATTTGGGAT 59.489 61.111 30.73 0.00 44.88 3.85
1381 1451 1.543941 GCTCAATCGGTCAGCGATCG 61.544 60.000 13.05 11.69 37.53 3.69
1386 1456 2.520904 GCGAGCTCAATCGGTCAGC 61.521 63.158 15.40 1.33 42.94 4.26
1433 1505 6.621316 AAGTACAGATACCTACGTCATCAG 57.379 41.667 0.00 0.00 30.88 2.90
1451 1523 0.384725 CTGCACGCACAGCAAAGTAC 60.385 55.000 0.00 0.00 42.17 2.73
1465 1537 3.807538 CGCATCACAGCCCTGCAC 61.808 66.667 0.00 0.00 35.64 4.57
1551 1630 2.526873 ACCGTCTGGAAGCCCTGT 60.527 61.111 0.00 0.00 39.21 4.00
1611 1690 1.741770 GGCGCAGGACACCTTGTAG 60.742 63.158 10.83 0.00 0.00 2.74
1831 3499 5.610235 AGTTGACGAGTACTAGTTCAGTC 57.390 43.478 10.15 15.91 38.80 3.51
1856 3528 2.638354 TTGCAAATGGGGCGCAGAG 61.638 57.895 10.83 3.45 36.91 3.35
1857 3529 2.599875 TTGCAAATGGGGCGCAGA 60.600 55.556 10.83 0.00 36.91 4.26
1864 3536 1.664333 GGCGTGTGTTGCAAATGGG 60.664 57.895 0.00 0.00 0.00 4.00
1893 3565 1.741706 AGCCAGCGAGATTGTCAAATG 59.258 47.619 0.00 0.00 0.00 2.32
1894 3566 1.741706 CAGCCAGCGAGATTGTCAAAT 59.258 47.619 0.00 0.00 0.00 2.32
1895 3567 1.159285 CAGCCAGCGAGATTGTCAAA 58.841 50.000 0.00 0.00 0.00 2.69
2189 3861 1.068333 TGGTTGGACGCGTAGTAGTTC 60.068 52.381 13.97 0.00 0.00 3.01
2499 4171 3.057969 TGTCCAACAGTAAGGCATCAG 57.942 47.619 0.00 0.00 0.00 2.90
2518 4190 5.292589 TCACATGATCGATCAAGACAACATG 59.707 40.000 31.16 23.23 40.69 3.21
2532 4204 1.202615 ACCTGCATCCTCACATGATCG 60.203 52.381 0.00 0.00 0.00 3.69
2702 4374 2.305927 TCCATTTCAGAGGTCCTTGGAC 59.694 50.000 11.13 11.13 0.00 4.02
2708 4380 1.280421 AGTGCTCCATTTCAGAGGTCC 59.720 52.381 0.00 0.00 0.00 4.46
2773 4445 1.545582 GGTGCTGTTACGTACCCTGTA 59.454 52.381 0.00 0.00 34.07 2.74
2826 4505 5.942325 ATAAAATCATAAAAACGTGCGGC 57.058 34.783 0.00 0.00 0.00 6.53
2991 4676 1.145119 AGGTCTTTTTGGAGGGTGGTC 59.855 52.381 0.00 0.00 0.00 4.02
3009 4694 4.021102 TCTGTTAGGAAAAGAGGCAAGG 57.979 45.455 0.00 0.00 0.00 3.61
3017 4702 5.182001 CACCACCAAGATCTGTTAGGAAAAG 59.818 44.000 0.00 0.00 0.00 2.27
3063 4748 3.058983 TGATGCACATGTCGAAGTTTGAC 60.059 43.478 15.34 15.34 36.88 3.18
3131 4816 1.825090 CTTGTCATGCTGCCCACTAA 58.175 50.000 0.00 0.00 0.00 2.24
3152 4837 4.814294 GGTACCGCGCCACCTCTG 62.814 72.222 17.32 0.00 0.00 3.35
3165 4850 0.822164 AGCACTACCACATCCGGTAC 59.178 55.000 0.00 0.00 40.67 3.34
3196 4881 1.737838 GCGTCCATCTCAATCCAACA 58.262 50.000 0.00 0.00 0.00 3.33
3213 4898 1.519455 CTTTCCCTCTAGCACCGCG 60.519 63.158 0.00 0.00 0.00 6.46
3294 4991 6.047870 CACATCTAGGACCTCATCTTCTTTG 58.952 44.000 0.00 0.00 0.00 2.77
3300 4997 3.981516 TCCACATCTAGGACCTCATCT 57.018 47.619 0.00 0.00 0.00 2.90
3316 5013 2.067365 ACAAGGAACAAAGGGTCCAC 57.933 50.000 1.10 0.00 0.00 4.02
3319 5016 2.100749 CACCAACAAGGAACAAAGGGTC 59.899 50.000 0.00 0.00 41.22 4.46
3320 5017 2.107366 CACCAACAAGGAACAAAGGGT 58.893 47.619 0.00 0.00 41.22 4.34
3321 5018 2.383855 TCACCAACAAGGAACAAAGGG 58.616 47.619 0.00 0.00 41.22 3.95
3322 5019 3.243839 CCATCACCAACAAGGAACAAAGG 60.244 47.826 0.00 0.00 41.22 3.11
3323 5020 3.636300 TCCATCACCAACAAGGAACAAAG 59.364 43.478 0.00 0.00 41.22 2.77
3326 5023 3.074390 AGATCCATCACCAACAAGGAACA 59.926 43.478 0.00 0.00 41.22 3.18
3332 5029 4.164796 AGCTCATAGATCCATCACCAACAA 59.835 41.667 0.00 0.00 0.00 2.83
3333 5030 3.713248 AGCTCATAGATCCATCACCAACA 59.287 43.478 0.00 0.00 0.00 3.33
3334 5031 4.202295 TGAGCTCATAGATCCATCACCAAC 60.202 45.833 13.74 0.00 27.46 3.77
3341 5038 2.288702 GCACGTGAGCTCATAGATCCAT 60.289 50.000 21.47 0.00 27.46 3.41
3342 5039 1.067669 GCACGTGAGCTCATAGATCCA 59.932 52.381 21.47 0.00 27.46 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.