Multiple sequence alignment - TraesCS7D01G420700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G420700 chr7D 100.000 2552 0 0 1 2552 540498600 540496049 0.000000e+00 4713
1 TraesCS7D01G420700 chr7D 92.329 1069 58 6 421 1466 575066467 575067534 0.000000e+00 1498
2 TraesCS7D01G420700 chr4D 95.302 1043 43 4 425 1463 502730799 502729759 0.000000e+00 1650
3 TraesCS7D01G420700 chr4D 91.925 1065 59 7 426 1465 486565783 486564721 0.000000e+00 1465
4 TraesCS7D01G420700 chr6D 94.808 1040 51 3 427 1465 447882347 447881310 0.000000e+00 1618
5 TraesCS7D01G420700 chr2A 93.370 1101 61 5 1463 2552 603725190 603726289 0.000000e+00 1618
6 TraesCS7D01G420700 chr1D 93.254 1097 58 5 1463 2552 415504621 415503534 0.000000e+00 1602
7 TraesCS7D01G420700 chr1D 92.616 1097 67 7 1463 2552 441744309 441743220 0.000000e+00 1565
8 TraesCS7D01G420700 chr5A 93.138 1093 62 10 1463 2552 327929124 327928042 0.000000e+00 1591
9 TraesCS7D01G420700 chr5A 93.474 1042 57 4 427 1465 590663656 590662623 0.000000e+00 1537
10 TraesCS7D01G420700 chr5A 92.440 1045 67 7 428 1465 459765352 459766391 0.000000e+00 1482
11 TraesCS7D01G420700 chr5A 91.943 1055 70 12 426 1465 619775390 619774336 0.000000e+00 1463
12 TraesCS7D01G420700 chr3B 92.792 1096 59 11 1463 2552 123037723 123036642 0.000000e+00 1568
13 TraesCS7D01G420700 chr7B 92.596 1094 74 2 1463 2549 164095940 164097033 0.000000e+00 1565
14 TraesCS7D01G420700 chr6B 92.518 1096 70 3 1463 2552 521114922 521116011 0.000000e+00 1559
15 TraesCS7D01G420700 chr3D 93.384 1058 50 4 426 1465 553937353 553936298 0.000000e+00 1548
16 TraesCS7D01G420700 chr3D 91.887 1097 76 5 1463 2552 45866565 45867655 0.000000e+00 1520
17 TraesCS7D01G420700 chr3D 92.898 1056 58 3 425 1465 580656357 580657410 0.000000e+00 1519
18 TraesCS7D01G420700 chr2D 92.237 1095 58 17 1463 2552 603143482 603144554 0.000000e+00 1526
19 TraesCS7D01G420700 chr2D 92.524 923 54 5 426 1345 100380834 100379924 0.000000e+00 1308
20 TraesCS7D01G420700 chr6A 93.090 1042 63 7 425 1465 581978723 581979756 0.000000e+00 1517
21 TraesCS7D01G420700 chr5D 92.140 1056 65 3 427 1465 98665778 98664724 0.000000e+00 1474
22 TraesCS7D01G420700 chr2B 91.126 1048 75 8 425 1465 394137755 394136719 0.000000e+00 1404
23 TraesCS7D01G420700 chr7A 88.071 394 17 5 26 419 621791616 621791253 8.380000e-120 440


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G420700 chr7D 540496049 540498600 2551 True 4713 4713 100.000 1 2552 1 chr7D.!!$R1 2551
1 TraesCS7D01G420700 chr7D 575066467 575067534 1067 False 1498 1498 92.329 421 1466 1 chr7D.!!$F1 1045
2 TraesCS7D01G420700 chr4D 502729759 502730799 1040 True 1650 1650 95.302 425 1463 1 chr4D.!!$R2 1038
3 TraesCS7D01G420700 chr4D 486564721 486565783 1062 True 1465 1465 91.925 426 1465 1 chr4D.!!$R1 1039
4 TraesCS7D01G420700 chr6D 447881310 447882347 1037 True 1618 1618 94.808 427 1465 1 chr6D.!!$R1 1038
5 TraesCS7D01G420700 chr2A 603725190 603726289 1099 False 1618 1618 93.370 1463 2552 1 chr2A.!!$F1 1089
6 TraesCS7D01G420700 chr1D 415503534 415504621 1087 True 1602 1602 93.254 1463 2552 1 chr1D.!!$R1 1089
7 TraesCS7D01G420700 chr1D 441743220 441744309 1089 True 1565 1565 92.616 1463 2552 1 chr1D.!!$R2 1089
8 TraesCS7D01G420700 chr5A 327928042 327929124 1082 True 1591 1591 93.138 1463 2552 1 chr5A.!!$R1 1089
9 TraesCS7D01G420700 chr5A 590662623 590663656 1033 True 1537 1537 93.474 427 1465 1 chr5A.!!$R2 1038
10 TraesCS7D01G420700 chr5A 459765352 459766391 1039 False 1482 1482 92.440 428 1465 1 chr5A.!!$F1 1037
11 TraesCS7D01G420700 chr5A 619774336 619775390 1054 True 1463 1463 91.943 426 1465 1 chr5A.!!$R3 1039
12 TraesCS7D01G420700 chr3B 123036642 123037723 1081 True 1568 1568 92.792 1463 2552 1 chr3B.!!$R1 1089
13 TraesCS7D01G420700 chr7B 164095940 164097033 1093 False 1565 1565 92.596 1463 2549 1 chr7B.!!$F1 1086
14 TraesCS7D01G420700 chr6B 521114922 521116011 1089 False 1559 1559 92.518 1463 2552 1 chr6B.!!$F1 1089
15 TraesCS7D01G420700 chr3D 553936298 553937353 1055 True 1548 1548 93.384 426 1465 1 chr3D.!!$R1 1039
16 TraesCS7D01G420700 chr3D 45866565 45867655 1090 False 1520 1520 91.887 1463 2552 1 chr3D.!!$F1 1089
17 TraesCS7D01G420700 chr3D 580656357 580657410 1053 False 1519 1519 92.898 425 1465 1 chr3D.!!$F2 1040
18 TraesCS7D01G420700 chr2D 603143482 603144554 1072 False 1526 1526 92.237 1463 2552 1 chr2D.!!$F1 1089
19 TraesCS7D01G420700 chr2D 100379924 100380834 910 True 1308 1308 92.524 426 1345 1 chr2D.!!$R1 919
20 TraesCS7D01G420700 chr6A 581978723 581979756 1033 False 1517 1517 93.090 425 1465 1 chr6A.!!$F1 1040
21 TraesCS7D01G420700 chr5D 98664724 98665778 1054 True 1474 1474 92.140 427 1465 1 chr5D.!!$R1 1038
22 TraesCS7D01G420700 chr2B 394136719 394137755 1036 True 1404 1404 91.126 425 1465 1 chr2B.!!$R1 1040

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.028505 TTCGTGTATAGCTCGACGCC 59.971 55.0 0.0 0.0 41.87 5.68 F
269 270 0.040246 GTATAGCTCGACGCCTGTCC 60.040 60.0 0.0 0.0 42.37 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1132 1191 0.631753 ATCCTCTCCTGTTCCCGAGA 59.368 55.0 0.0 0.0 34.07 4.04 R
1640 1705 0.792640 CTGGCTTGTGTAGTGCTTCG 59.207 55.0 0.0 0.0 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.235195 GCTCTACGTACCATATTGCTCG 58.765 50.000 0.00 0.00 0.00 5.03
22 23 3.822996 CTCTACGTACCATATTGCTCGG 58.177 50.000 0.00 0.00 0.00 4.63
23 24 2.030540 TCTACGTACCATATTGCTCGGC 60.031 50.000 0.00 0.00 0.00 5.54
24 25 0.462375 ACGTACCATATTGCTCGGCA 59.538 50.000 0.00 0.00 36.47 5.69
25 26 0.859232 CGTACCATATTGCTCGGCAC 59.141 55.000 0.00 0.00 38.71 5.01
26 27 1.538204 CGTACCATATTGCTCGGCACT 60.538 52.381 0.00 0.00 38.71 4.40
27 28 2.561569 GTACCATATTGCTCGGCACTT 58.438 47.619 0.00 0.00 38.71 3.16
28 29 1.668419 ACCATATTGCTCGGCACTTC 58.332 50.000 0.00 0.00 38.71 3.01
29 30 1.065491 ACCATATTGCTCGGCACTTCA 60.065 47.619 0.00 0.00 38.71 3.02
30 31 1.331756 CCATATTGCTCGGCACTTCAC 59.668 52.381 0.00 0.00 38.71 3.18
31 32 1.004610 CATATTGCTCGGCACTTCACG 60.005 52.381 0.00 0.00 38.71 4.35
32 33 0.037697 TATTGCTCGGCACTTCACGT 60.038 50.000 0.00 0.00 38.71 4.49
33 34 1.568612 ATTGCTCGGCACTTCACGTG 61.569 55.000 9.94 9.94 46.58 4.49
34 35 2.661866 GCTCGGCACTTCACGTGT 60.662 61.111 16.51 0.00 45.57 4.49
35 36 2.943345 GCTCGGCACTTCACGTGTG 61.943 63.158 16.51 12.19 45.57 3.82
36 37 1.299850 CTCGGCACTTCACGTGTGA 60.300 57.895 16.51 4.82 45.57 3.58
37 38 0.874175 CTCGGCACTTCACGTGTGAA 60.874 55.000 16.51 14.21 46.27 3.18
38 39 1.149361 TCGGCACTTCACGTGTGAAC 61.149 55.000 16.51 2.77 43.90 3.18
39 40 1.275657 GGCACTTCACGTGTGAACG 59.724 57.895 16.51 10.04 43.90 3.95
40 41 1.149361 GGCACTTCACGTGTGAACGA 61.149 55.000 16.51 0.00 43.90 3.85
41 42 0.648441 GCACTTCACGTGTGAACGAA 59.352 50.000 16.51 0.00 43.90 3.85
42 43 1.591394 GCACTTCACGTGTGAACGAAC 60.591 52.381 16.51 0.00 43.90 3.95
43 44 0.918619 ACTTCACGTGTGAACGAACG 59.081 50.000 16.51 4.65 43.90 3.95
44 45 1.193644 CTTCACGTGTGAACGAACGA 58.806 50.000 16.51 0.00 43.90 3.85
45 46 1.187271 CTTCACGTGTGAACGAACGAG 59.813 52.381 16.51 0.00 43.90 4.18
46 47 0.377905 TCACGTGTGAACGAACGAGA 59.622 50.000 16.51 0.00 42.32 4.04
47 48 0.770590 CACGTGTGAACGAACGAGAG 59.229 55.000 7.58 0.00 42.32 3.20
48 49 0.933509 ACGTGTGAACGAACGAGAGC 60.934 55.000 5.12 0.00 42.32 4.09
49 50 1.767388 GTGTGAACGAACGAGAGCG 59.233 57.895 0.14 0.00 44.79 5.03
72 73 2.749839 GCTTGGGCATGCACGGTA 60.750 61.111 21.36 4.43 38.54 4.02
73 74 3.051392 GCTTGGGCATGCACGGTAC 62.051 63.158 21.36 2.91 38.54 3.34
74 75 1.673993 CTTGGGCATGCACGGTACA 60.674 57.895 21.36 5.23 0.00 2.90
75 76 1.001517 TTGGGCATGCACGGTACAT 60.002 52.632 21.36 0.00 0.00 2.29
76 77 0.253327 TTGGGCATGCACGGTACATA 59.747 50.000 21.36 0.00 0.00 2.29
77 78 0.462937 TGGGCATGCACGGTACATAC 60.463 55.000 21.36 0.00 0.00 2.39
78 79 0.179056 GGGCATGCACGGTACATACT 60.179 55.000 21.36 0.00 0.00 2.12
79 80 0.937304 GGCATGCACGGTACATACTG 59.063 55.000 21.36 0.00 38.52 2.74
80 81 1.651987 GCATGCACGGTACATACTGT 58.348 50.000 14.21 0.00 46.16 3.55
85 86 3.411808 ACGGTACATACTGTGCACG 57.588 52.632 13.13 9.67 43.73 5.34
86 87 0.734942 ACGGTACATACTGTGCACGC 60.735 55.000 13.13 0.00 43.73 5.34
87 88 0.734597 CGGTACATACTGTGCACGCA 60.735 55.000 13.13 0.00 34.53 5.24
88 89 0.999406 GGTACATACTGTGCACGCAG 59.001 55.000 13.13 9.59 41.92 5.18
89 90 0.370273 GTACATACTGTGCACGCAGC 59.630 55.000 13.13 0.00 45.96 5.25
98 99 2.725815 GCACGCAGCGAACCAAAC 60.726 61.111 24.65 0.00 0.00 2.93
99 100 2.712539 CACGCAGCGAACCAAACA 59.287 55.556 24.65 0.00 0.00 2.83
100 101 1.369209 CACGCAGCGAACCAAACAG 60.369 57.895 24.65 0.00 0.00 3.16
101 102 1.522806 ACGCAGCGAACCAAACAGA 60.523 52.632 24.65 0.00 0.00 3.41
102 103 1.092921 ACGCAGCGAACCAAACAGAA 61.093 50.000 24.65 0.00 0.00 3.02
103 104 0.657368 CGCAGCGAACCAAACAGAAC 60.657 55.000 9.98 0.00 0.00 3.01
104 105 0.317854 GCAGCGAACCAAACAGAACC 60.318 55.000 0.00 0.00 0.00 3.62
105 106 0.310854 CAGCGAACCAAACAGAACCC 59.689 55.000 0.00 0.00 0.00 4.11
106 107 0.106918 AGCGAACCAAACAGAACCCA 60.107 50.000 0.00 0.00 0.00 4.51
107 108 0.310854 GCGAACCAAACAGAACCCAG 59.689 55.000 0.00 0.00 0.00 4.45
108 109 0.310854 CGAACCAAACAGAACCCAGC 59.689 55.000 0.00 0.00 0.00 4.85
109 110 1.692411 GAACCAAACAGAACCCAGCT 58.308 50.000 0.00 0.00 0.00 4.24
110 111 2.808933 CGAACCAAACAGAACCCAGCTA 60.809 50.000 0.00 0.00 0.00 3.32
111 112 2.568623 ACCAAACAGAACCCAGCTAG 57.431 50.000 0.00 0.00 0.00 3.42
112 113 1.168714 CCAAACAGAACCCAGCTAGC 58.831 55.000 6.62 6.62 0.00 3.42
113 114 1.271597 CCAAACAGAACCCAGCTAGCT 60.272 52.381 12.68 12.68 0.00 3.32
114 115 2.027192 CCAAACAGAACCCAGCTAGCTA 60.027 50.000 18.86 0.00 0.00 3.32
115 116 3.265791 CAAACAGAACCCAGCTAGCTAG 58.734 50.000 18.86 16.84 0.00 3.42
133 134 4.418337 CAGCGGATGCATCACGTA 57.582 55.556 27.25 0.00 46.23 3.57
134 135 1.927210 CAGCGGATGCATCACGTAC 59.073 57.895 27.25 15.32 46.23 3.67
135 136 1.227263 AGCGGATGCATCACGTACC 60.227 57.895 27.25 14.73 46.23 3.34
136 137 1.520564 GCGGATGCATCACGTACCA 60.521 57.895 27.25 0.00 42.15 3.25
137 138 1.762222 GCGGATGCATCACGTACCAC 61.762 60.000 27.25 11.38 42.15 4.16
138 139 0.459411 CGGATGCATCACGTACCACA 60.459 55.000 27.25 0.00 0.00 4.17
139 140 1.006832 GGATGCATCACGTACCACAC 58.993 55.000 27.25 2.88 0.00 3.82
140 141 1.674519 GGATGCATCACGTACCACACA 60.675 52.381 27.25 0.00 0.00 3.72
141 142 1.660607 GATGCATCACGTACCACACAG 59.339 52.381 21.92 0.00 0.00 3.66
142 143 0.948623 TGCATCACGTACCACACAGC 60.949 55.000 0.00 0.00 0.00 4.40
143 144 0.948623 GCATCACGTACCACACAGCA 60.949 55.000 0.00 0.00 0.00 4.41
144 145 1.725641 CATCACGTACCACACAGCAT 58.274 50.000 0.00 0.00 0.00 3.79
145 146 1.394572 CATCACGTACCACACAGCATG 59.605 52.381 0.00 0.00 46.00 4.06
146 147 0.676736 TCACGTACCACACAGCATGA 59.323 50.000 0.00 0.00 39.69 3.07
147 148 1.069358 TCACGTACCACACAGCATGAA 59.931 47.619 0.00 0.00 39.69 2.57
148 149 2.076100 CACGTACCACACAGCATGAAT 58.924 47.619 0.00 0.00 39.69 2.57
149 150 2.094258 CACGTACCACACAGCATGAATC 59.906 50.000 0.00 0.00 39.69 2.52
150 151 1.665679 CGTACCACACAGCATGAATCC 59.334 52.381 0.00 0.00 39.69 3.01
151 152 2.710377 GTACCACACAGCATGAATCCA 58.290 47.619 0.00 0.00 39.69 3.41
152 153 1.538047 ACCACACAGCATGAATCCAC 58.462 50.000 0.00 0.00 39.69 4.02
153 154 0.448990 CCACACAGCATGAATCCACG 59.551 55.000 0.00 0.00 39.69 4.94
154 155 0.448990 CACACAGCATGAATCCACGG 59.551 55.000 0.00 0.00 39.69 4.94
155 156 0.324614 ACACAGCATGAATCCACGGA 59.675 50.000 0.00 0.00 39.69 4.69
156 157 1.271325 ACACAGCATGAATCCACGGAA 60.271 47.619 0.00 0.00 39.69 4.30
157 158 1.399440 CACAGCATGAATCCACGGAAG 59.601 52.381 0.00 0.00 39.69 3.46
158 159 1.278985 ACAGCATGAATCCACGGAAGA 59.721 47.619 0.00 0.00 39.69 2.87
159 160 2.092753 ACAGCATGAATCCACGGAAGAT 60.093 45.455 0.00 0.00 39.69 2.40
160 161 2.289820 CAGCATGAATCCACGGAAGATG 59.710 50.000 0.00 0.00 39.69 2.90
161 162 1.002033 GCATGAATCCACGGAAGATGC 60.002 52.381 0.00 10.03 31.67 3.91
162 163 2.291365 CATGAATCCACGGAAGATGCA 58.709 47.619 0.00 0.00 33.74 3.96
163 164 2.488204 TGAATCCACGGAAGATGCAA 57.512 45.000 0.00 0.00 0.00 4.08
164 165 2.083774 TGAATCCACGGAAGATGCAAC 58.916 47.619 0.00 0.00 0.00 4.17
165 166 1.062587 GAATCCACGGAAGATGCAACG 59.937 52.381 0.00 0.00 0.00 4.10
166 167 1.369091 ATCCACGGAAGATGCAACGC 61.369 55.000 0.00 0.00 0.00 4.84
167 168 2.324330 CCACGGAAGATGCAACGCA 61.324 57.895 0.00 0.00 44.86 5.24
187 188 3.165498 GGCGTCGCCTTGTAGTTG 58.835 61.111 28.98 0.00 46.69 3.16
188 189 1.666872 GGCGTCGCCTTGTAGTTGT 60.667 57.895 28.98 0.00 46.69 3.32
189 190 0.388907 GGCGTCGCCTTGTAGTTGTA 60.389 55.000 28.98 0.00 46.69 2.41
190 191 0.989890 GCGTCGCCTTGTAGTTGTAG 59.010 55.000 5.75 0.00 0.00 2.74
191 192 1.625616 CGTCGCCTTGTAGTTGTAGG 58.374 55.000 0.00 0.00 0.00 3.18
198 199 2.484264 CCTTGTAGTTGTAGGCTGTTGC 59.516 50.000 0.00 0.00 38.76 4.17
208 209 2.743928 GCTGTTGCCGCTGTAGCT 60.744 61.111 2.04 0.00 39.32 3.32
209 210 3.031964 GCTGTTGCCGCTGTAGCTG 62.032 63.158 0.00 0.00 39.32 4.24
215 216 3.171987 CCGCTGTAGCTGCAGTTG 58.828 61.111 29.12 21.89 38.65 3.16
216 217 2.393768 CCGCTGTAGCTGCAGTTGG 61.394 63.158 29.12 25.87 38.65 3.77
217 218 2.393768 CGCTGTAGCTGCAGTTGGG 61.394 63.158 29.12 14.66 38.65 4.12
218 219 2.694760 GCTGTAGCTGCAGTTGGGC 61.695 63.158 29.12 14.50 38.65 5.36
219 220 2.034066 TGTAGCTGCAGTTGGGCC 59.966 61.111 16.64 0.00 0.00 5.80
220 221 3.127533 GTAGCTGCAGTTGGGCCG 61.128 66.667 16.64 0.00 0.00 6.13
221 222 3.636231 TAGCTGCAGTTGGGCCGT 61.636 61.111 16.64 0.00 0.00 5.68
222 223 3.605749 TAGCTGCAGTTGGGCCGTC 62.606 63.158 16.64 0.00 0.00 4.79
227 228 4.988598 CAGTTGGGCCGTCGCTGT 62.989 66.667 0.00 0.00 34.44 4.40
228 229 4.681978 AGTTGGGCCGTCGCTGTC 62.682 66.667 0.00 0.00 34.44 3.51
237 238 4.664677 GTCGCTGTCCGGTGCACT 62.665 66.667 17.98 0.00 37.59 4.40
238 239 2.986979 TCGCTGTCCGGTGCACTA 60.987 61.111 17.98 0.00 37.59 2.74
239 240 2.507102 CGCTGTCCGGTGCACTAG 60.507 66.667 17.98 11.18 0.00 2.57
240 241 2.970639 GCTGTCCGGTGCACTAGA 59.029 61.111 17.98 10.98 0.00 2.43
241 242 1.446272 GCTGTCCGGTGCACTAGAC 60.446 63.158 24.15 24.15 0.00 2.59
242 243 1.964448 CTGTCCGGTGCACTAGACA 59.036 57.895 28.53 28.53 37.65 3.41
243 244 0.532573 CTGTCCGGTGCACTAGACAT 59.467 55.000 29.72 0.00 38.49 3.06
244 245 0.973632 TGTCCGGTGCACTAGACATT 59.026 50.000 27.53 0.00 34.44 2.71
245 246 1.346395 TGTCCGGTGCACTAGACATTT 59.654 47.619 27.53 0.00 34.44 2.32
246 247 2.224426 TGTCCGGTGCACTAGACATTTT 60.224 45.455 27.53 0.00 34.44 1.82
247 248 2.415512 GTCCGGTGCACTAGACATTTTC 59.584 50.000 25.25 4.15 0.00 2.29
248 249 1.393539 CCGGTGCACTAGACATTTTCG 59.606 52.381 17.98 7.30 0.00 3.46
249 250 2.066262 CGGTGCACTAGACATTTTCGT 58.934 47.619 17.98 0.00 0.00 3.85
250 251 2.159841 CGGTGCACTAGACATTTTCGTG 60.160 50.000 17.98 0.00 0.00 4.35
251 252 2.806244 GGTGCACTAGACATTTTCGTGT 59.194 45.455 17.98 0.00 34.39 4.49
252 253 3.991773 GGTGCACTAGACATTTTCGTGTA 59.008 43.478 17.98 0.00 31.16 2.90
253 254 4.630069 GGTGCACTAGACATTTTCGTGTAT 59.370 41.667 17.98 0.00 31.16 2.29
254 255 5.808540 GGTGCACTAGACATTTTCGTGTATA 59.191 40.000 17.98 0.00 31.16 1.47
255 256 6.019801 GGTGCACTAGACATTTTCGTGTATAG 60.020 42.308 17.98 7.04 45.04 1.31
256 257 5.518847 TGCACTAGACATTTTCGTGTATAGC 59.481 40.000 0.00 0.00 43.98 2.97
257 258 5.749109 GCACTAGACATTTTCGTGTATAGCT 59.251 40.000 0.00 0.00 43.98 3.32
258 259 6.074782 GCACTAGACATTTTCGTGTATAGCTC 60.075 42.308 0.00 0.00 43.98 4.09
259 260 6.140895 CACTAGACATTTTCGTGTATAGCTCG 59.859 42.308 0.00 0.00 43.98 5.03
260 261 5.244785 AGACATTTTCGTGTATAGCTCGA 57.755 39.130 0.00 0.00 40.69 4.04
261 262 5.035443 AGACATTTTCGTGTATAGCTCGAC 58.965 41.667 0.00 0.00 41.87 4.20
262 263 3.789756 ACATTTTCGTGTATAGCTCGACG 59.210 43.478 0.00 0.00 41.87 5.12
263 264 1.818850 TTTCGTGTATAGCTCGACGC 58.181 50.000 0.00 0.00 41.87 5.19
264 265 0.028505 TTCGTGTATAGCTCGACGCC 59.971 55.000 0.00 0.00 41.87 5.68
265 266 0.812811 TCGTGTATAGCTCGACGCCT 60.813 55.000 0.00 0.00 38.05 5.52
266 267 0.657659 CGTGTATAGCTCGACGCCTG 60.658 60.000 0.00 0.00 40.39 4.85
267 268 0.381089 GTGTATAGCTCGACGCCTGT 59.619 55.000 0.00 0.00 40.39 4.00
268 269 0.661552 TGTATAGCTCGACGCCTGTC 59.338 55.000 0.00 0.00 41.91 3.51
269 270 0.040246 GTATAGCTCGACGCCTGTCC 60.040 60.000 0.00 0.00 42.37 4.02
270 271 1.504647 TATAGCTCGACGCCTGTCCG 61.505 60.000 0.00 0.00 42.37 4.79
273 274 4.778415 CTCGACGCCTGTCCGTGG 62.778 72.222 0.00 0.00 42.24 4.94
275 276 4.657824 CGACGCCTGTCCGTGGTT 62.658 66.667 0.00 0.00 42.24 3.67
276 277 2.737376 GACGCCTGTCCGTGGTTC 60.737 66.667 0.00 0.00 42.24 3.62
277 278 4.309950 ACGCCTGTCCGTGGTTCC 62.310 66.667 0.00 0.00 40.40 3.62
278 279 4.308458 CGCCTGTCCGTGGTTCCA 62.308 66.667 0.00 0.00 0.00 3.53
279 280 2.351276 GCCTGTCCGTGGTTCCAT 59.649 61.111 0.00 0.00 0.00 3.41
280 281 2.040544 GCCTGTCCGTGGTTCCATG 61.041 63.158 4.23 4.23 0.00 3.66
281 282 1.377202 CCTGTCCGTGGTTCCATGG 60.377 63.158 20.63 20.63 42.76 3.66
282 283 2.033448 TGTCCGTGGTTCCATGGC 59.967 61.111 21.56 17.12 41.54 4.40
283 284 2.033448 GTCCGTGGTTCCATGGCA 59.967 61.111 21.56 10.48 41.54 4.92
284 285 2.033448 TCCGTGGTTCCATGGCAC 59.967 61.111 21.56 6.38 41.54 5.01
285 286 3.430862 CCGTGGTTCCATGGCACG 61.431 66.667 26.94 26.94 36.47 5.34
286 287 4.101790 CGTGGTTCCATGGCACGC 62.102 66.667 24.14 14.51 32.60 5.34
287 288 3.747976 GTGGTTCCATGGCACGCC 61.748 66.667 6.96 0.00 0.00 5.68
288 289 3.965258 TGGTTCCATGGCACGCCT 61.965 61.111 6.96 0.00 36.94 5.52
289 290 2.676471 GGTTCCATGGCACGCCTT 60.676 61.111 6.96 0.00 36.94 4.35
290 291 2.568090 GTTCCATGGCACGCCTTG 59.432 61.111 6.96 15.23 39.92 3.61
291 292 2.115052 TTCCATGGCACGCCTTGT 59.885 55.556 19.25 0.13 38.96 3.16
300 301 4.798433 ACGCCTTGTGATGAGCAA 57.202 50.000 0.00 0.00 0.00 3.91
301 302 2.247790 ACGCCTTGTGATGAGCAAC 58.752 52.632 0.00 0.00 0.00 4.17
302 303 1.237285 ACGCCTTGTGATGAGCAACC 61.237 55.000 0.00 0.00 0.00 3.77
303 304 1.885871 GCCTTGTGATGAGCAACCC 59.114 57.895 0.00 0.00 0.00 4.11
304 305 1.598701 GCCTTGTGATGAGCAACCCC 61.599 60.000 0.00 0.00 0.00 4.95
305 306 0.251297 CCTTGTGATGAGCAACCCCA 60.251 55.000 0.00 0.00 0.00 4.96
306 307 1.171308 CTTGTGATGAGCAACCCCAG 58.829 55.000 0.00 0.00 0.00 4.45
307 308 0.895100 TTGTGATGAGCAACCCCAGC 60.895 55.000 0.00 0.00 0.00 4.85
308 309 2.048603 GTGATGAGCAACCCCAGCC 61.049 63.158 0.00 0.00 0.00 4.85
309 310 2.440980 GATGAGCAACCCCAGCCC 60.441 66.667 0.00 0.00 0.00 5.19
310 311 4.066139 ATGAGCAACCCCAGCCCC 62.066 66.667 0.00 0.00 0.00 5.80
312 313 4.066139 GAGCAACCCCAGCCCCAT 62.066 66.667 0.00 0.00 0.00 4.00
313 314 4.066139 AGCAACCCCAGCCCCATC 62.066 66.667 0.00 0.00 0.00 3.51
315 316 4.463788 CAACCCCAGCCCCATCCC 62.464 72.222 0.00 0.00 0.00 3.85
319 320 3.958860 CCCAGCCCCATCCCGATC 61.959 72.222 0.00 0.00 0.00 3.69
320 321 3.958860 CCAGCCCCATCCCGATCC 61.959 72.222 0.00 0.00 0.00 3.36
321 322 3.170672 CAGCCCCATCCCGATCCA 61.171 66.667 0.00 0.00 0.00 3.41
322 323 2.851102 AGCCCCATCCCGATCCAG 60.851 66.667 0.00 0.00 0.00 3.86
323 324 3.958860 GCCCCATCCCGATCCAGG 61.959 72.222 0.00 0.00 0.00 4.45
324 325 3.958860 CCCCATCCCGATCCAGGC 61.959 72.222 0.00 0.00 0.00 4.85
325 326 3.170672 CCCATCCCGATCCAGGCA 61.171 66.667 0.00 0.00 0.00 4.75
326 327 2.532532 CCCATCCCGATCCAGGCAT 61.533 63.158 0.00 0.00 0.00 4.40
327 328 1.457604 CCATCCCGATCCAGGCATT 59.542 57.895 0.00 0.00 0.00 3.56
328 329 0.178981 CCATCCCGATCCAGGCATTT 60.179 55.000 0.00 0.00 0.00 2.32
329 330 1.696063 CATCCCGATCCAGGCATTTT 58.304 50.000 0.00 0.00 0.00 1.82
330 331 2.488891 CCATCCCGATCCAGGCATTTTA 60.489 50.000 0.00 0.00 0.00 1.52
331 332 3.424703 CATCCCGATCCAGGCATTTTAT 58.575 45.455 0.00 0.00 0.00 1.40
332 333 3.593442 TCCCGATCCAGGCATTTTATT 57.407 42.857 0.00 0.00 0.00 1.40
333 334 3.909732 TCCCGATCCAGGCATTTTATTT 58.090 40.909 0.00 0.00 0.00 1.40
334 335 4.285863 TCCCGATCCAGGCATTTTATTTT 58.714 39.130 0.00 0.00 0.00 1.82
335 336 4.714308 TCCCGATCCAGGCATTTTATTTTT 59.286 37.500 0.00 0.00 0.00 1.94
336 337 5.049828 CCCGATCCAGGCATTTTATTTTTC 58.950 41.667 0.00 0.00 0.00 2.29
337 338 4.739716 CCGATCCAGGCATTTTATTTTTCG 59.260 41.667 0.00 0.00 0.00 3.46
338 339 4.739716 CGATCCAGGCATTTTATTTTTCGG 59.260 41.667 0.00 0.00 0.00 4.30
339 340 3.855858 TCCAGGCATTTTATTTTTCGGC 58.144 40.909 0.00 0.00 0.00 5.54
340 341 2.935849 CCAGGCATTTTATTTTTCGGCC 59.064 45.455 0.00 0.00 40.18 6.13
341 342 2.602660 CAGGCATTTTATTTTTCGGCCG 59.397 45.455 22.12 22.12 44.40 6.13
342 343 2.232696 AGGCATTTTATTTTTCGGCCGT 59.767 40.909 27.15 7.91 44.40 5.68
343 344 2.347150 GGCATTTTATTTTTCGGCCGTG 59.653 45.455 27.15 12.95 0.00 4.94
344 345 2.990514 GCATTTTATTTTTCGGCCGTGT 59.009 40.909 27.15 10.18 0.00 4.49
345 346 4.167268 GCATTTTATTTTTCGGCCGTGTA 58.833 39.130 27.15 9.28 0.00 2.90
346 347 4.264380 GCATTTTATTTTTCGGCCGTGTAG 59.736 41.667 27.15 0.00 0.00 2.74
347 348 4.422546 TTTTATTTTTCGGCCGTGTAGG 57.577 40.909 27.15 0.00 44.97 3.18
356 357 4.208686 CCGTGTAGGCTCGCTCCC 62.209 72.222 0.00 0.00 0.00 4.30
357 358 3.449227 CGTGTAGGCTCGCTCCCA 61.449 66.667 0.00 0.00 0.00 4.37
358 359 2.786495 CGTGTAGGCTCGCTCCCAT 61.786 63.158 0.00 0.00 0.00 4.00
359 360 1.227380 GTGTAGGCTCGCTCCCATG 60.227 63.158 0.00 0.00 0.00 3.66
360 361 1.685765 TGTAGGCTCGCTCCCATGT 60.686 57.895 0.00 0.00 0.00 3.21
361 362 1.068250 GTAGGCTCGCTCCCATGTC 59.932 63.158 0.00 0.00 0.00 3.06
362 363 2.134287 TAGGCTCGCTCCCATGTCC 61.134 63.158 0.00 0.00 0.00 4.02
363 364 2.871795 TAGGCTCGCTCCCATGTCCA 62.872 60.000 0.00 0.00 0.00 4.02
364 365 2.268920 GCTCGCTCCCATGTCCAA 59.731 61.111 0.00 0.00 0.00 3.53
365 366 2.109126 GCTCGCTCCCATGTCCAAC 61.109 63.158 0.00 0.00 0.00 3.77
366 367 1.811266 CTCGCTCCCATGTCCAACG 60.811 63.158 0.00 0.00 0.00 4.10
367 368 2.225791 CTCGCTCCCATGTCCAACGA 62.226 60.000 0.00 0.00 0.00 3.85
368 369 1.153369 CGCTCCCATGTCCAACGAT 60.153 57.895 0.00 0.00 0.00 3.73
369 370 0.744414 CGCTCCCATGTCCAACGATT 60.744 55.000 0.00 0.00 0.00 3.34
370 371 1.463674 GCTCCCATGTCCAACGATTT 58.536 50.000 0.00 0.00 0.00 2.17
371 372 1.401905 GCTCCCATGTCCAACGATTTC 59.598 52.381 0.00 0.00 0.00 2.17
372 373 2.017049 CTCCCATGTCCAACGATTTCC 58.983 52.381 0.00 0.00 0.00 3.13
373 374 1.352687 TCCCATGTCCAACGATTTCCA 59.647 47.619 0.00 0.00 0.00 3.53
374 375 1.745087 CCCATGTCCAACGATTTCCAG 59.255 52.381 0.00 0.00 0.00 3.86
375 376 1.133025 CCATGTCCAACGATTTCCAGC 59.867 52.381 0.00 0.00 0.00 4.85
376 377 1.811965 CATGTCCAACGATTTCCAGCA 59.188 47.619 0.00 0.00 0.00 4.41
377 378 2.198827 TGTCCAACGATTTCCAGCAT 57.801 45.000 0.00 0.00 0.00 3.79
378 379 1.811965 TGTCCAACGATTTCCAGCATG 59.188 47.619 0.00 0.00 0.00 4.06
389 390 4.918129 CAGCATGGCATTCCGCGC 62.918 66.667 0.00 0.00 43.84 6.86
409 410 1.482278 GGAAACGCAATCAAAACGCA 58.518 45.000 0.00 0.00 0.00 5.24
410 411 2.058057 GGAAACGCAATCAAAACGCAT 58.942 42.857 0.00 0.00 0.00 4.73
411 412 2.090503 GGAAACGCAATCAAAACGCATC 59.909 45.455 0.00 0.00 0.00 3.91
412 413 1.696988 AACGCAATCAAAACGCATCC 58.303 45.000 0.00 0.00 0.00 3.51
413 414 0.595588 ACGCAATCAAAACGCATCCA 59.404 45.000 0.00 0.00 0.00 3.41
414 415 1.202114 ACGCAATCAAAACGCATCCAT 59.798 42.857 0.00 0.00 0.00 3.41
415 416 1.847999 CGCAATCAAAACGCATCCATC 59.152 47.619 0.00 0.00 0.00 3.51
416 417 2.195922 GCAATCAAAACGCATCCATCC 58.804 47.619 0.00 0.00 0.00 3.51
417 418 2.813061 CAATCAAAACGCATCCATCCC 58.187 47.619 0.00 0.00 0.00 3.85
418 419 2.142356 ATCAAAACGCATCCATCCCA 57.858 45.000 0.00 0.00 0.00 4.37
419 420 1.916506 TCAAAACGCATCCATCCCAA 58.083 45.000 0.00 0.00 0.00 4.12
420 421 1.818060 TCAAAACGCATCCATCCCAAG 59.182 47.619 0.00 0.00 0.00 3.61
421 422 1.818060 CAAAACGCATCCATCCCAAGA 59.182 47.619 0.00 0.00 0.00 3.02
422 423 2.428171 CAAAACGCATCCATCCCAAGAT 59.572 45.455 0.00 0.00 0.00 2.40
441 442 0.107116 TGTAGGGCGTGTTTGGTTGT 60.107 50.000 0.00 0.00 0.00 3.32
443 444 0.470766 TAGGGCGTGTTTGGTTGTCT 59.529 50.000 0.00 0.00 0.00 3.41
462 463 2.671070 CATCGAGCCCAACCAGGT 59.329 61.111 0.00 0.00 34.66 4.00
482 484 4.083862 GCGCGGGAAAGGAGAGGT 62.084 66.667 8.83 0.00 0.00 3.85
495 497 1.476833 GGAGAGGTCTGTTTGGTTGCA 60.477 52.381 0.00 0.00 0.00 4.08
499 501 0.319813 GGTCTGTTTGGTTGCATGGC 60.320 55.000 0.00 0.00 0.00 4.40
509 511 2.961741 TGGTTGCATGGCTTTTCTGTTA 59.038 40.909 0.00 0.00 0.00 2.41
539 541 1.670406 CACGCTCCTCAAAGCAGCT 60.670 57.895 0.00 0.00 42.62 4.24
570 572 0.685131 TCGCTGGAAACCCTCGGATA 60.685 55.000 0.00 0.00 0.00 2.59
604 606 4.694233 CCAGGCTCAGTGCAGCGT 62.694 66.667 0.00 6.31 45.15 5.07
666 670 0.181114 CGGGAGATGGAAATCTGGCA 59.819 55.000 0.00 0.00 0.00 4.92
934 985 1.351017 CCCCCTTTGTTAGCTCAGTGA 59.649 52.381 0.00 0.00 0.00 3.41
945 996 1.134670 AGCTCAGTGATTAGGCCGTTC 60.135 52.381 0.00 0.00 0.00 3.95
1132 1191 3.016736 CTCCGCTATGGTCCATTGTTTT 58.983 45.455 10.33 0.00 39.52 2.43
1218 1278 5.649395 TCTGTGGATGCTTAGAATGAAAAGG 59.351 40.000 0.00 0.00 0.00 3.11
1259 1319 0.616111 GAGACCTTCAGGAGCAGGGA 60.616 60.000 0.00 0.00 38.94 4.20
1304 1364 2.613977 CCAGTGTAGAAGAGCAAGTGGG 60.614 54.545 0.00 0.00 0.00 4.61
1341 1401 2.158385 TGTTGGCCATAACCAGAGGTTT 60.158 45.455 6.09 0.00 44.33 3.27
1363 1423 1.070175 GGGTCATTCACAACACGTTCG 60.070 52.381 0.00 0.00 0.00 3.95
1452 1514 4.151121 GAGAGATGATCAGGAGACCATCA 58.849 47.826 0.09 0.00 38.22 3.07
1501 1563 8.791675 TGAGCATTGACAATATACACTTTTCAA 58.208 29.630 0.00 0.00 0.00 2.69
1533 1596 6.882610 ATGCTTGTATTGTTCAAGTTGAGA 57.117 33.333 5.56 0.00 42.67 3.27
1570 1633 3.101437 TGATGCCATTTTCAGGATTGCT 58.899 40.909 0.00 0.00 0.00 3.91
1625 1688 2.494073 GAGTTCCTAGGTCACAGTCTGG 59.506 54.545 9.08 0.00 0.00 3.86
1638 1701 0.339859 AGTCTGGAGCATACAGGGGA 59.660 55.000 3.05 0.00 36.62 4.81
1640 1705 1.134371 GTCTGGAGCATACAGGGGAAC 60.134 57.143 3.05 0.00 36.62 3.62
1771 1836 1.552337 ACAGCATGAGTCGACCTGATT 59.448 47.619 20.91 0.00 39.69 2.57
1842 1907 1.142314 TCGGCCGGGTATTCTTTCG 59.858 57.895 27.83 0.00 0.00 3.46
1964 2029 2.957402 ACTGTTGAGAGGGCATTTGA 57.043 45.000 0.00 0.00 0.00 2.69
2017 2082 1.215423 AGAAGCCATTCCACCCATACC 59.785 52.381 0.00 0.00 35.94 2.73
2045 2110 6.014499 ACTCAGGTTAAGCTAGTTCTTGCTTA 60.014 38.462 18.93 18.93 46.19 3.09
2217 2288 3.694889 GGCGATGTGGCTTAACAAC 57.305 52.632 0.00 0.00 40.72 3.32
2266 2368 1.878734 AGAAGAACAAGAAGCAGCAGC 59.121 47.619 0.00 0.00 42.56 5.25
2272 2374 1.228184 AAGAAGCAGCAGCAGCAGT 60.228 52.632 12.92 0.00 45.49 4.40
2299 2413 0.673022 GCAGAAGCAGCAGCAGTAGT 60.673 55.000 3.17 0.00 45.49 2.73
2323 2437 1.502640 CAGCAGCTGAAGCAGAAGC 59.497 57.895 20.43 0.00 45.16 3.86
2330 2450 2.149578 GCTGAAGCAGAAGCAGAAGAA 58.850 47.619 0.00 0.00 45.49 2.52
2331 2451 2.160022 GCTGAAGCAGAAGCAGAAGAAG 59.840 50.000 0.00 0.00 45.49 2.85
2332 2452 3.661944 CTGAAGCAGAAGCAGAAGAAGA 58.338 45.455 0.00 0.00 45.49 2.87
2333 2453 3.661944 TGAAGCAGAAGCAGAAGAAGAG 58.338 45.455 0.00 0.00 45.49 2.85
2334 2454 2.766345 AGCAGAAGCAGAAGAAGAGG 57.234 50.000 0.00 0.00 45.49 3.69
2406 2532 7.704789 GCCAATGGCTCTTAATAATTTGAAG 57.295 36.000 18.47 0.00 46.69 3.02
2475 2601 3.132111 TGGCGCTACATGTTCAGATTCTA 59.868 43.478 7.64 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.822996 CCGAGCAATATGGTACGTAGAG 58.177 50.000 0.00 0.00 0.00 2.43
3 4 2.287970 TGCCGAGCAATATGGTACGTAG 60.288 50.000 0.00 0.00 34.76 3.51
6 7 0.859232 GTGCCGAGCAATATGGTACG 59.141 55.000 0.00 0.00 41.47 3.67
7 8 2.240493 AGTGCCGAGCAATATGGTAC 57.760 50.000 0.00 0.00 41.47 3.34
8 9 2.169561 TGAAGTGCCGAGCAATATGGTA 59.830 45.455 0.00 0.00 41.47 3.25
9 10 1.065491 TGAAGTGCCGAGCAATATGGT 60.065 47.619 0.00 0.00 41.47 3.55
10 11 1.331756 GTGAAGTGCCGAGCAATATGG 59.668 52.381 0.00 0.00 41.47 2.74
11 12 1.004610 CGTGAAGTGCCGAGCAATATG 60.005 52.381 0.00 0.00 41.47 1.78
12 13 1.290203 CGTGAAGTGCCGAGCAATAT 58.710 50.000 0.00 0.00 41.47 1.28
13 14 0.037697 ACGTGAAGTGCCGAGCAATA 60.038 50.000 0.00 0.00 41.47 1.90
14 15 1.301716 ACGTGAAGTGCCGAGCAAT 60.302 52.632 0.00 0.00 41.47 3.56
15 16 2.108157 ACGTGAAGTGCCGAGCAA 59.892 55.556 0.00 0.00 41.47 3.91
16 17 2.661537 CACGTGAAGTGCCGAGCA 60.662 61.111 10.90 0.00 44.72 4.26
31 32 1.767388 CGCTCTCGTTCGTTCACAC 59.233 57.895 0.00 0.00 0.00 3.82
32 33 4.221873 CGCTCTCGTTCGTTCACA 57.778 55.556 0.00 0.00 0.00 3.58
55 56 2.749839 TACCGTGCATGCCCAAGC 60.750 61.111 16.68 0.00 40.48 4.01
56 57 1.031571 ATGTACCGTGCATGCCCAAG 61.032 55.000 16.68 3.81 0.00 3.61
57 58 0.253327 TATGTACCGTGCATGCCCAA 59.747 50.000 16.68 0.00 0.00 4.12
58 59 0.462937 GTATGTACCGTGCATGCCCA 60.463 55.000 16.68 2.57 0.00 5.36
59 60 0.179056 AGTATGTACCGTGCATGCCC 60.179 55.000 16.68 1.56 30.85 5.36
60 61 0.937304 CAGTATGTACCGTGCATGCC 59.063 55.000 16.68 5.63 30.85 4.40
73 74 1.625759 TTCGCTGCGTGCACAGTATG 61.626 55.000 22.48 3.27 43.06 2.39
74 75 1.374125 TTCGCTGCGTGCACAGTAT 60.374 52.632 22.48 0.00 43.06 2.12
75 76 2.028337 TTCGCTGCGTGCACAGTA 59.972 55.556 22.48 8.37 43.06 2.74
76 77 3.640000 GTTCGCTGCGTGCACAGT 61.640 61.111 22.48 0.00 43.06 3.55
77 78 4.374702 GGTTCGCTGCGTGCACAG 62.375 66.667 22.48 8.89 43.06 3.66
79 80 3.462333 TTTGGTTCGCTGCGTGCAC 62.462 57.895 22.48 16.04 43.06 4.57
80 81 3.205536 TTTGGTTCGCTGCGTGCA 61.206 55.556 22.48 4.57 43.06 4.57
81 82 2.725815 GTTTGGTTCGCTGCGTGC 60.726 61.111 22.48 14.99 38.57 5.34
82 83 1.369209 CTGTTTGGTTCGCTGCGTG 60.369 57.895 22.48 0.00 0.00 5.34
83 84 1.092921 TTCTGTTTGGTTCGCTGCGT 61.093 50.000 22.48 0.00 0.00 5.24
84 85 0.657368 GTTCTGTTTGGTTCGCTGCG 60.657 55.000 17.25 17.25 0.00 5.18
85 86 0.317854 GGTTCTGTTTGGTTCGCTGC 60.318 55.000 0.00 0.00 0.00 5.25
86 87 0.310854 GGGTTCTGTTTGGTTCGCTG 59.689 55.000 0.00 0.00 0.00 5.18
87 88 0.106918 TGGGTTCTGTTTGGTTCGCT 60.107 50.000 0.00 0.00 0.00 4.93
88 89 0.310854 CTGGGTTCTGTTTGGTTCGC 59.689 55.000 0.00 0.00 0.00 4.70
89 90 0.310854 GCTGGGTTCTGTTTGGTTCG 59.689 55.000 0.00 0.00 0.00 3.95
90 91 1.692411 AGCTGGGTTCTGTTTGGTTC 58.308 50.000 0.00 0.00 0.00 3.62
91 92 2.863809 CTAGCTGGGTTCTGTTTGGTT 58.136 47.619 0.00 0.00 0.00 3.67
92 93 1.545651 GCTAGCTGGGTTCTGTTTGGT 60.546 52.381 7.70 0.00 0.00 3.67
93 94 1.168714 GCTAGCTGGGTTCTGTTTGG 58.831 55.000 7.70 0.00 0.00 3.28
94 95 2.191128 AGCTAGCTGGGTTCTGTTTG 57.809 50.000 18.57 0.00 0.00 2.93
95 96 2.355209 GCTAGCTAGCTGGGTTCTGTTT 60.355 50.000 33.71 0.00 45.62 2.83
96 97 1.208293 GCTAGCTAGCTGGGTTCTGTT 59.792 52.381 33.71 0.00 45.62 3.16
97 98 0.827368 GCTAGCTAGCTGGGTTCTGT 59.173 55.000 33.71 0.00 45.62 3.41
98 99 3.677002 GCTAGCTAGCTGGGTTCTG 57.323 57.895 33.71 9.04 45.62 3.02
116 117 1.490693 GGTACGTGATGCATCCGCTG 61.491 60.000 26.94 16.34 39.64 5.18
117 118 1.227263 GGTACGTGATGCATCCGCT 60.227 57.895 26.94 19.36 39.64 5.52
118 119 1.520564 TGGTACGTGATGCATCCGC 60.521 57.895 26.94 18.33 39.24 5.54
119 120 0.459411 TGTGGTACGTGATGCATCCG 60.459 55.000 25.99 25.99 0.00 4.18
120 121 1.006832 GTGTGGTACGTGATGCATCC 58.993 55.000 23.67 13.71 0.00 3.51
121 122 1.660607 CTGTGTGGTACGTGATGCATC 59.339 52.381 20.14 20.14 0.00 3.91
122 123 1.725641 CTGTGTGGTACGTGATGCAT 58.274 50.000 0.00 0.00 0.00 3.96
123 124 0.948623 GCTGTGTGGTACGTGATGCA 60.949 55.000 0.00 0.00 0.00 3.96
124 125 0.948623 TGCTGTGTGGTACGTGATGC 60.949 55.000 0.00 0.00 0.00 3.91
125 126 1.394572 CATGCTGTGTGGTACGTGATG 59.605 52.381 0.00 0.00 0.00 3.07
126 127 1.275010 TCATGCTGTGTGGTACGTGAT 59.725 47.619 0.00 0.00 0.00 3.06
127 128 0.676736 TCATGCTGTGTGGTACGTGA 59.323 50.000 0.00 0.00 0.00 4.35
128 129 1.507562 TTCATGCTGTGTGGTACGTG 58.492 50.000 0.00 0.00 0.00 4.49
129 130 2.346803 GATTCATGCTGTGTGGTACGT 58.653 47.619 0.00 0.00 0.00 3.57
130 131 1.665679 GGATTCATGCTGTGTGGTACG 59.334 52.381 0.00 0.00 0.00 3.67
131 132 2.420022 GTGGATTCATGCTGTGTGGTAC 59.580 50.000 0.00 0.00 0.00 3.34
132 133 2.710377 GTGGATTCATGCTGTGTGGTA 58.290 47.619 0.00 0.00 0.00 3.25
133 134 1.538047 GTGGATTCATGCTGTGTGGT 58.462 50.000 0.00 0.00 0.00 4.16
134 135 0.448990 CGTGGATTCATGCTGTGTGG 59.551 55.000 0.00 0.00 0.00 4.17
135 136 0.448990 CCGTGGATTCATGCTGTGTG 59.551 55.000 0.00 0.00 0.00 3.82
136 137 0.324614 TCCGTGGATTCATGCTGTGT 59.675 50.000 0.00 0.00 0.00 3.72
137 138 1.399440 CTTCCGTGGATTCATGCTGTG 59.601 52.381 0.00 0.00 0.00 3.66
138 139 1.278985 TCTTCCGTGGATTCATGCTGT 59.721 47.619 0.00 0.00 0.00 4.40
139 140 2.028420 TCTTCCGTGGATTCATGCTG 57.972 50.000 0.00 0.00 0.00 4.41
140 141 2.569059 CATCTTCCGTGGATTCATGCT 58.431 47.619 0.00 0.00 0.00 3.79
141 142 1.002033 GCATCTTCCGTGGATTCATGC 60.002 52.381 9.95 9.95 0.00 4.06
142 143 2.291365 TGCATCTTCCGTGGATTCATG 58.709 47.619 0.00 0.00 0.00 3.07
143 144 2.684881 GTTGCATCTTCCGTGGATTCAT 59.315 45.455 0.00 0.00 0.00 2.57
144 145 2.083774 GTTGCATCTTCCGTGGATTCA 58.916 47.619 0.00 0.00 0.00 2.57
145 146 1.062587 CGTTGCATCTTCCGTGGATTC 59.937 52.381 0.00 0.00 0.00 2.52
146 147 1.086696 CGTTGCATCTTCCGTGGATT 58.913 50.000 0.00 0.00 0.00 3.01
147 148 1.369091 GCGTTGCATCTTCCGTGGAT 61.369 55.000 0.00 0.00 0.00 3.41
148 149 2.032634 GCGTTGCATCTTCCGTGGA 61.033 57.895 0.00 0.00 0.00 4.02
149 150 2.324330 TGCGTTGCATCTTCCGTGG 61.324 57.895 0.00 0.00 31.71 4.94
150 151 3.252964 TGCGTTGCATCTTCCGTG 58.747 55.556 0.00 0.00 31.71 4.94
171 172 0.989890 CTACAACTACAAGGCGACGC 59.010 55.000 12.43 12.43 0.00 5.19
172 173 1.625616 CCTACAACTACAAGGCGACG 58.374 55.000 0.00 0.00 0.00 5.12
173 174 1.356938 GCCTACAACTACAAGGCGAC 58.643 55.000 0.00 0.00 45.82 5.19
174 175 3.826637 GCCTACAACTACAAGGCGA 57.173 52.632 0.00 0.00 45.82 5.54
177 178 2.484264 GCAACAGCCTACAACTACAAGG 59.516 50.000 0.00 0.00 0.00 3.61
178 179 2.484264 GGCAACAGCCTACAACTACAAG 59.516 50.000 0.00 0.00 45.21 3.16
179 180 2.500229 GGCAACAGCCTACAACTACAA 58.500 47.619 0.00 0.00 45.21 2.41
180 181 1.606994 CGGCAACAGCCTACAACTACA 60.607 52.381 4.85 0.00 46.50 2.74
181 182 1.076332 CGGCAACAGCCTACAACTAC 58.924 55.000 4.85 0.00 46.50 2.73
182 183 0.672401 GCGGCAACAGCCTACAACTA 60.672 55.000 4.85 0.00 46.50 2.24
183 184 1.966451 GCGGCAACAGCCTACAACT 60.966 57.895 4.85 0.00 46.50 3.16
184 185 1.966451 AGCGGCAACAGCCTACAAC 60.966 57.895 1.45 0.00 46.50 3.32
185 186 1.965930 CAGCGGCAACAGCCTACAA 60.966 57.895 1.45 0.00 46.50 2.41
186 187 1.822114 TACAGCGGCAACAGCCTACA 61.822 55.000 1.45 0.00 46.50 2.74
187 188 1.079405 TACAGCGGCAACAGCCTAC 60.079 57.895 1.45 0.00 46.50 3.18
188 189 1.218047 CTACAGCGGCAACAGCCTA 59.782 57.895 1.45 0.00 46.50 3.93
189 190 2.046892 CTACAGCGGCAACAGCCT 60.047 61.111 1.45 0.00 46.50 4.58
190 191 3.804193 GCTACAGCGGCAACAGCC 61.804 66.667 1.45 0.00 45.19 4.85
200 201 2.694760 GCCCAACTGCAGCTACAGC 61.695 63.158 15.27 7.12 41.60 4.40
201 202 2.042831 GGCCCAACTGCAGCTACAG 61.043 63.158 15.27 12.62 43.59 2.74
202 203 2.034066 GGCCCAACTGCAGCTACA 59.966 61.111 15.27 0.00 0.00 2.74
203 204 3.127533 CGGCCCAACTGCAGCTAC 61.128 66.667 15.27 0.00 0.00 3.58
204 205 3.605749 GACGGCCCAACTGCAGCTA 62.606 63.158 15.27 0.00 0.00 3.32
210 211 4.988598 ACAGCGACGGCCCAACTG 62.989 66.667 0.00 2.34 41.24 3.16
211 212 4.681978 GACAGCGACGGCCCAACT 62.682 66.667 0.00 0.00 41.24 3.16
220 221 3.277211 TAGTGCACCGGACAGCGAC 62.277 63.158 14.63 10.06 0.00 5.19
221 222 2.986979 TAGTGCACCGGACAGCGA 60.987 61.111 14.63 0.00 0.00 4.93
222 223 2.507102 CTAGTGCACCGGACAGCG 60.507 66.667 14.63 0.00 0.00 5.18
223 224 1.446272 GTCTAGTGCACCGGACAGC 60.446 63.158 25.25 10.17 0.00 4.40
224 225 0.532573 ATGTCTAGTGCACCGGACAG 59.467 55.000 31.41 16.62 41.11 3.51
225 226 0.973632 AATGTCTAGTGCACCGGACA 59.026 50.000 30.82 30.82 41.84 4.02
226 227 2.094762 AAATGTCTAGTGCACCGGAC 57.905 50.000 24.15 24.15 0.00 4.79
227 228 2.695359 GAAAATGTCTAGTGCACCGGA 58.305 47.619 14.63 9.31 0.00 5.14
228 229 1.393539 CGAAAATGTCTAGTGCACCGG 59.606 52.381 14.63 0.00 0.00 5.28
229 230 2.066262 ACGAAAATGTCTAGTGCACCG 58.934 47.619 14.63 8.24 0.00 4.94
230 231 2.806244 ACACGAAAATGTCTAGTGCACC 59.194 45.455 14.63 0.00 36.38 5.01
231 232 5.779806 ATACACGAAAATGTCTAGTGCAC 57.220 39.130 9.40 9.40 36.38 4.57
232 233 5.518847 GCTATACACGAAAATGTCTAGTGCA 59.481 40.000 0.00 0.00 33.78 4.57
233 234 5.749109 AGCTATACACGAAAATGTCTAGTGC 59.251 40.000 0.00 0.00 33.78 4.40
234 235 6.140895 CGAGCTATACACGAAAATGTCTAGTG 59.859 42.308 0.00 0.00 33.78 2.74
235 236 6.037940 TCGAGCTATACACGAAAATGTCTAGT 59.962 38.462 0.00 0.00 38.47 2.57
236 237 6.357503 GTCGAGCTATACACGAAAATGTCTAG 59.642 42.308 0.00 0.00 43.08 2.43
237 238 6.197276 GTCGAGCTATACACGAAAATGTCTA 58.803 40.000 0.00 0.00 43.08 2.59
238 239 5.035443 GTCGAGCTATACACGAAAATGTCT 58.965 41.667 0.00 0.00 43.08 3.41
239 240 4.086227 CGTCGAGCTATACACGAAAATGTC 60.086 45.833 0.00 0.00 43.08 3.06
240 241 3.789756 CGTCGAGCTATACACGAAAATGT 59.210 43.478 0.00 0.00 43.08 2.71
241 242 3.360765 GCGTCGAGCTATACACGAAAATG 60.361 47.826 9.66 0.00 43.08 2.32
242 243 2.787680 GCGTCGAGCTATACACGAAAAT 59.212 45.455 9.66 0.00 43.08 1.82
243 244 2.179589 GCGTCGAGCTATACACGAAAA 58.820 47.619 9.66 0.00 43.08 2.29
244 245 1.532505 GGCGTCGAGCTATACACGAAA 60.533 52.381 9.66 0.00 43.08 3.46
245 246 0.028505 GGCGTCGAGCTATACACGAA 59.971 55.000 9.66 0.00 43.08 3.85
256 257 4.778415 CCACGGACAGGCGTCGAG 62.778 72.222 0.00 3.76 43.61 4.04
258 259 4.657824 AACCACGGACAGGCGTCG 62.658 66.667 0.00 0.00 43.61 5.12
259 260 2.737376 GAACCACGGACAGGCGTC 60.737 66.667 0.00 1.63 41.80 5.19
260 261 4.309950 GGAACCACGGACAGGCGT 62.310 66.667 0.00 0.00 0.00 5.68
261 262 3.605749 ATGGAACCACGGACAGGCG 62.606 63.158 0.00 0.00 0.00 5.52
262 263 2.040544 CATGGAACCACGGACAGGC 61.041 63.158 0.00 0.00 0.00 4.85
263 264 1.377202 CCATGGAACCACGGACAGG 60.377 63.158 5.56 0.00 29.60 4.00
264 265 2.040544 GCCATGGAACCACGGACAG 61.041 63.158 18.40 0.00 29.60 3.51
265 266 2.033448 GCCATGGAACCACGGACA 59.967 61.111 18.40 0.00 29.60 4.02
266 267 2.033448 TGCCATGGAACCACGGAC 59.967 61.111 18.40 2.27 29.60 4.79
267 268 2.033448 GTGCCATGGAACCACGGA 59.967 61.111 18.40 0.00 29.60 4.69
268 269 3.430862 CGTGCCATGGAACCACGG 61.431 66.667 26.47 13.69 46.03 4.94
270 271 3.747976 GGCGTGCCATGGAACCAC 61.748 66.667 17.85 13.50 35.81 4.16
271 272 3.505790 AAGGCGTGCCATGGAACCA 62.506 57.895 17.85 1.39 38.92 3.67
272 273 2.676471 AAGGCGTGCCATGGAACC 60.676 61.111 17.85 9.86 38.92 3.62
273 274 2.268076 ACAAGGCGTGCCATGGAAC 61.268 57.895 18.40 15.85 38.94 3.62
274 275 2.115052 ACAAGGCGTGCCATGGAA 59.885 55.556 18.40 0.00 38.94 3.53
275 276 2.482796 ATCACAAGGCGTGCCATGGA 62.483 55.000 18.40 13.49 45.92 3.41
276 277 2.048023 ATCACAAGGCGTGCCATGG 61.048 57.895 19.10 7.63 45.92 3.66
277 278 1.138036 CATCACAAGGCGTGCCATG 59.862 57.895 14.29 14.19 45.92 3.66
278 279 1.002257 TCATCACAAGGCGTGCCAT 60.002 52.632 14.29 0.00 45.92 4.40
279 280 1.672030 CTCATCACAAGGCGTGCCA 60.672 57.895 14.29 0.00 45.92 4.92
280 281 3.044059 GCTCATCACAAGGCGTGCC 62.044 63.158 1.67 1.67 45.92 5.01
281 282 1.855213 TTGCTCATCACAAGGCGTGC 61.855 55.000 0.00 0.00 45.92 5.34
283 284 1.237285 GGTTGCTCATCACAAGGCGT 61.237 55.000 0.00 0.00 0.00 5.68
284 285 1.503542 GGTTGCTCATCACAAGGCG 59.496 57.895 0.00 0.00 0.00 5.52
285 286 1.598701 GGGGTTGCTCATCACAAGGC 61.599 60.000 0.00 0.00 0.00 4.35
286 287 0.251297 TGGGGTTGCTCATCACAAGG 60.251 55.000 0.00 0.00 0.00 3.61
287 288 1.171308 CTGGGGTTGCTCATCACAAG 58.829 55.000 0.00 0.00 0.00 3.16
288 289 0.895100 GCTGGGGTTGCTCATCACAA 60.895 55.000 0.00 0.00 0.00 3.33
289 290 1.303561 GCTGGGGTTGCTCATCACA 60.304 57.895 0.00 0.00 0.00 3.58
290 291 2.048603 GGCTGGGGTTGCTCATCAC 61.049 63.158 0.00 0.00 0.00 3.06
291 292 2.356278 GGCTGGGGTTGCTCATCA 59.644 61.111 0.00 0.00 0.00 3.07
292 293 2.440980 GGGCTGGGGTTGCTCATC 60.441 66.667 0.00 0.00 0.00 2.92
293 294 4.066139 GGGGCTGGGGTTGCTCAT 62.066 66.667 0.00 0.00 31.40 2.90
295 296 4.066139 ATGGGGCTGGGGTTGCTC 62.066 66.667 0.00 0.00 0.00 4.26
296 297 4.066139 GATGGGGCTGGGGTTGCT 62.066 66.667 0.00 0.00 0.00 3.91
298 299 4.463788 GGGATGGGGCTGGGGTTG 62.464 72.222 0.00 0.00 0.00 3.77
302 303 3.958860 GATCGGGATGGGGCTGGG 61.959 72.222 0.00 0.00 0.00 4.45
303 304 3.958860 GGATCGGGATGGGGCTGG 61.959 72.222 0.00 0.00 0.00 4.85
304 305 3.170672 TGGATCGGGATGGGGCTG 61.171 66.667 0.00 0.00 0.00 4.85
305 306 2.851102 CTGGATCGGGATGGGGCT 60.851 66.667 0.00 0.00 0.00 5.19
306 307 3.958860 CCTGGATCGGGATGGGGC 61.959 72.222 0.00 0.00 29.82 5.80
307 308 3.958860 GCCTGGATCGGGATGGGG 61.959 72.222 0.00 0.00 29.82 4.96
308 309 2.072874 AATGCCTGGATCGGGATGGG 62.073 60.000 0.00 0.00 35.09 4.00
309 310 0.178981 AAATGCCTGGATCGGGATGG 60.179 55.000 0.00 0.00 35.09 3.51
310 311 1.696063 AAAATGCCTGGATCGGGATG 58.304 50.000 0.00 0.00 35.09 3.51
311 312 3.814504 ATAAAATGCCTGGATCGGGAT 57.185 42.857 0.00 0.00 36.59 3.85
312 313 3.593442 AATAAAATGCCTGGATCGGGA 57.407 42.857 0.00 0.00 29.82 5.14
313 314 4.670896 AAAATAAAATGCCTGGATCGGG 57.329 40.909 0.00 0.00 0.00 5.14
314 315 4.739716 CGAAAAATAAAATGCCTGGATCGG 59.260 41.667 0.00 0.00 0.00 4.18
315 316 4.739716 CCGAAAAATAAAATGCCTGGATCG 59.260 41.667 0.00 0.00 0.00 3.69
316 317 4.507756 GCCGAAAAATAAAATGCCTGGATC 59.492 41.667 0.00 0.00 0.00 3.36
317 318 4.441792 GCCGAAAAATAAAATGCCTGGAT 58.558 39.130 0.00 0.00 0.00 3.41
318 319 3.368948 GGCCGAAAAATAAAATGCCTGGA 60.369 43.478 0.00 0.00 34.61 3.86
319 320 2.935849 GGCCGAAAAATAAAATGCCTGG 59.064 45.455 0.00 0.00 34.61 4.45
320 321 2.602660 CGGCCGAAAAATAAAATGCCTG 59.397 45.455 24.07 0.00 35.28 4.85
321 322 2.232696 ACGGCCGAAAAATAAAATGCCT 59.767 40.909 35.90 0.00 35.28 4.75
322 323 2.347150 CACGGCCGAAAAATAAAATGCC 59.653 45.455 35.90 0.00 0.00 4.40
323 324 2.990514 ACACGGCCGAAAAATAAAATGC 59.009 40.909 35.90 0.00 0.00 3.56
324 325 4.796312 CCTACACGGCCGAAAAATAAAATG 59.204 41.667 35.90 17.98 0.00 2.32
325 326 4.989044 CCTACACGGCCGAAAAATAAAAT 58.011 39.130 35.90 0.68 0.00 1.82
326 327 4.422546 CCTACACGGCCGAAAAATAAAA 57.577 40.909 35.90 5.13 0.00 1.52
339 340 4.208686 GGGAGCGAGCCTACACGG 62.209 72.222 0.00 0.00 0.00 4.94
340 341 2.786495 ATGGGAGCGAGCCTACACG 61.786 63.158 0.00 0.00 0.00 4.49
341 342 1.227380 CATGGGAGCGAGCCTACAC 60.227 63.158 0.00 0.00 0.00 2.90
342 343 1.676678 GACATGGGAGCGAGCCTACA 61.677 60.000 0.00 0.00 0.00 2.74
343 344 1.068250 GACATGGGAGCGAGCCTAC 59.932 63.158 0.00 0.00 0.00 3.18
344 345 2.134287 GGACATGGGAGCGAGCCTA 61.134 63.158 0.00 0.00 0.00 3.93
345 346 3.474570 GGACATGGGAGCGAGCCT 61.475 66.667 0.00 0.00 0.00 4.58
346 347 3.329542 TTGGACATGGGAGCGAGCC 62.330 63.158 0.00 0.00 0.00 4.70
347 348 2.109126 GTTGGACATGGGAGCGAGC 61.109 63.158 0.00 0.00 0.00 5.03
348 349 1.811266 CGTTGGACATGGGAGCGAG 60.811 63.158 0.00 0.00 0.00 5.03
349 350 1.613317 ATCGTTGGACATGGGAGCGA 61.613 55.000 0.00 0.00 0.00 4.93
350 351 0.744414 AATCGTTGGACATGGGAGCG 60.744 55.000 0.00 0.00 0.00 5.03
351 352 1.401905 GAAATCGTTGGACATGGGAGC 59.598 52.381 0.00 0.00 0.00 4.70
352 353 2.017049 GGAAATCGTTGGACATGGGAG 58.983 52.381 0.00 0.00 0.00 4.30
353 354 1.352687 TGGAAATCGTTGGACATGGGA 59.647 47.619 0.00 0.00 0.00 4.37
354 355 1.745087 CTGGAAATCGTTGGACATGGG 59.255 52.381 0.00 0.00 0.00 4.00
355 356 1.133025 GCTGGAAATCGTTGGACATGG 59.867 52.381 0.00 0.00 0.00 3.66
356 357 1.811965 TGCTGGAAATCGTTGGACATG 59.188 47.619 0.00 0.00 0.00 3.21
357 358 2.198827 TGCTGGAAATCGTTGGACAT 57.801 45.000 0.00 0.00 0.00 3.06
358 359 1.811965 CATGCTGGAAATCGTTGGACA 59.188 47.619 0.00 0.00 0.00 4.02
359 360 1.133025 CCATGCTGGAAATCGTTGGAC 59.867 52.381 0.00 0.00 40.96 4.02
360 361 1.462616 CCATGCTGGAAATCGTTGGA 58.537 50.000 0.00 0.00 40.96 3.53
361 362 0.179129 GCCATGCTGGAAATCGTTGG 60.179 55.000 6.40 0.00 40.96 3.77
362 363 0.527113 TGCCATGCTGGAAATCGTTG 59.473 50.000 6.40 0.00 40.96 4.10
363 364 1.477553 ATGCCATGCTGGAAATCGTT 58.522 45.000 6.40 0.00 40.96 3.85
364 365 1.406539 GAATGCCATGCTGGAAATCGT 59.593 47.619 6.40 0.00 40.96 3.73
365 366 1.269413 GGAATGCCATGCTGGAAATCG 60.269 52.381 6.40 0.00 40.96 3.34
366 367 1.269413 CGGAATGCCATGCTGGAAATC 60.269 52.381 6.40 0.00 40.96 2.17
367 368 0.748450 CGGAATGCCATGCTGGAAAT 59.252 50.000 6.40 0.00 40.96 2.17
368 369 1.947597 GCGGAATGCCATGCTGGAAA 61.948 55.000 6.40 0.00 40.96 3.13
369 370 2.417257 GCGGAATGCCATGCTGGAA 61.417 57.895 6.40 0.00 40.96 3.53
370 371 2.829914 GCGGAATGCCATGCTGGA 60.830 61.111 6.40 0.00 40.96 3.86
371 372 4.260355 CGCGGAATGCCATGCTGG 62.260 66.667 0.00 0.00 42.08 4.85
372 373 4.918129 GCGCGGAATGCCATGCTG 62.918 66.667 8.83 0.00 42.08 4.41
389 390 0.429363 GCGTTTTGATTGCGTTTCCG 59.571 50.000 0.00 0.00 37.07 4.30
390 391 1.482278 TGCGTTTTGATTGCGTTTCC 58.518 45.000 0.00 0.00 0.00 3.13
391 392 2.090503 GGATGCGTTTTGATTGCGTTTC 59.909 45.455 0.00 0.00 0.00 2.78
392 393 2.058057 GGATGCGTTTTGATTGCGTTT 58.942 42.857 0.00 0.00 0.00 3.60
393 394 1.000827 TGGATGCGTTTTGATTGCGTT 60.001 42.857 0.00 0.00 0.00 4.84
394 395 0.595588 TGGATGCGTTTTGATTGCGT 59.404 45.000 0.00 0.00 0.00 5.24
395 396 1.847999 GATGGATGCGTTTTGATTGCG 59.152 47.619 0.00 0.00 0.00 4.85
396 397 2.195922 GGATGGATGCGTTTTGATTGC 58.804 47.619 0.00 0.00 0.00 3.56
397 398 2.166050 TGGGATGGATGCGTTTTGATTG 59.834 45.455 0.00 0.00 0.00 2.67
398 399 2.455557 TGGGATGGATGCGTTTTGATT 58.544 42.857 0.00 0.00 0.00 2.57
399 400 2.142356 TGGGATGGATGCGTTTTGAT 57.858 45.000 0.00 0.00 0.00 2.57
400 401 1.818060 CTTGGGATGGATGCGTTTTGA 59.182 47.619 0.00 0.00 0.00 2.69
401 402 1.818060 TCTTGGGATGGATGCGTTTTG 59.182 47.619 0.00 0.00 0.00 2.44
402 403 2.214376 TCTTGGGATGGATGCGTTTT 57.786 45.000 0.00 0.00 0.00 2.43
403 404 2.026641 CATCTTGGGATGGATGCGTTT 58.973 47.619 0.00 0.00 43.97 3.60
404 405 1.683943 CATCTTGGGATGGATGCGTT 58.316 50.000 0.00 0.00 43.97 4.84
405 406 3.409201 CATCTTGGGATGGATGCGT 57.591 52.632 0.00 0.00 43.97 5.24
413 414 0.469917 CACGCCCTACATCTTGGGAT 59.530 55.000 1.75 0.00 46.15 3.85
414 415 0.907704 ACACGCCCTACATCTTGGGA 60.908 55.000 1.75 0.00 46.15 4.37
415 416 0.035439 AACACGCCCTACATCTTGGG 60.035 55.000 0.00 0.00 46.00 4.12
416 417 1.468520 CAAACACGCCCTACATCTTGG 59.531 52.381 0.00 0.00 0.00 3.61
417 418 1.468520 CCAAACACGCCCTACATCTTG 59.531 52.381 0.00 0.00 0.00 3.02
418 419 1.073284 ACCAAACACGCCCTACATCTT 59.927 47.619 0.00 0.00 0.00 2.40
419 420 0.690762 ACCAAACACGCCCTACATCT 59.309 50.000 0.00 0.00 0.00 2.90
420 421 1.199097 CAACCAAACACGCCCTACATC 59.801 52.381 0.00 0.00 0.00 3.06
421 422 1.243902 CAACCAAACACGCCCTACAT 58.756 50.000 0.00 0.00 0.00 2.29
422 423 0.107116 ACAACCAAACACGCCCTACA 60.107 50.000 0.00 0.00 0.00 2.74
423 424 0.589708 GACAACCAAACACGCCCTAC 59.410 55.000 0.00 0.00 0.00 3.18
441 442 2.268920 GGTTGGGCTCGATGCAGA 59.731 61.111 8.71 0.00 45.15 4.26
443 444 2.046023 CTGGTTGGGCTCGATGCA 60.046 61.111 8.71 0.00 45.15 3.96
482 484 1.412079 AAGCCATGCAACCAAACAGA 58.588 45.000 0.00 0.00 0.00 3.41
495 497 2.450476 CAGGCCTAACAGAAAAGCCAT 58.550 47.619 3.98 0.00 46.35 4.40
499 501 2.096496 CGATGCAGGCCTAACAGAAAAG 59.904 50.000 3.98 0.00 0.00 2.27
570 572 2.433318 GCTCGCGAGAAACTGCCT 60.433 61.111 38.74 0.00 41.32 4.75
703 708 0.396556 TGGCTATGGGTGAGCGAGTA 60.397 55.000 0.00 0.00 41.06 2.59
812 830 2.436646 ACCAGATCCGCCGCAAAG 60.437 61.111 0.00 0.00 0.00 2.77
934 985 1.139058 CACCTAGCTGAACGGCCTAAT 59.861 52.381 0.00 0.00 0.00 1.73
945 996 4.551388 GAAATCGATCCTACACCTAGCTG 58.449 47.826 0.00 0.00 0.00 4.24
1132 1191 0.631753 ATCCTCTCCTGTTCCCGAGA 59.368 55.000 0.00 0.00 34.07 4.04
1158 1218 5.468540 TGCAGTTGTAGATGTAGTTCAGT 57.531 39.130 0.00 0.00 0.00 3.41
1259 1319 5.352569 GTGTTGATGCTATCTTGTAACAGCT 59.647 40.000 0.00 0.00 35.05 4.24
1304 1364 2.493278 CCAACAACATGGAGGAACATCC 59.507 50.000 0.00 0.00 43.54 3.51
1341 1401 3.395639 GAACGTGTTGTGAATGACCCTA 58.604 45.455 0.00 0.00 0.00 3.53
1452 1514 1.656587 TGAAGTATGGTGTCTGGCCT 58.343 50.000 3.32 0.00 0.00 5.19
1501 1563 5.887598 TGAACAATACAAGCATATCAAGCCT 59.112 36.000 0.00 0.00 0.00 4.58
1570 1633 3.525609 TGAGTACCATCTATTGCCCCAAA 59.474 43.478 0.00 0.00 0.00 3.28
1625 1688 1.941325 CTTCGTTCCCCTGTATGCTC 58.059 55.000 0.00 0.00 0.00 4.26
1638 1701 1.226746 GGCTTGTGTAGTGCTTCGTT 58.773 50.000 0.00 0.00 0.00 3.85
1640 1705 0.792640 CTGGCTTGTGTAGTGCTTCG 59.207 55.000 0.00 0.00 0.00 3.79
1784 1849 0.963962 AAGGTAGAACTTGCCGTCGA 59.036 50.000 0.00 0.00 0.00 4.20
1842 1907 1.704641 ACCTTGTTTTCCTGAAGGGC 58.295 50.000 0.00 0.00 40.63 5.19
1964 2029 7.990314 GGATCTTAAACCTATTCTTCAGAGCTT 59.010 37.037 0.00 0.00 0.00 3.74
2017 2082 3.515901 AGAACTAGCTTAACCTGAGTGGG 59.484 47.826 0.00 0.00 41.11 4.61
2158 2229 5.913137 TTGTTCTTCCAAGTGTCATTGTT 57.087 34.783 0.00 0.00 0.00 2.83
2167 2238 4.349365 TCCAACCTTTTGTTCTTCCAAGT 58.651 39.130 0.00 0.00 34.00 3.16
2217 2288 1.466167 CTTCAAATCCTGCACTGACCG 59.534 52.381 0.00 0.00 0.00 4.79
2266 2368 2.001159 CTTCTGCTTCTGCTACTGCTG 58.999 52.381 0.00 0.00 40.48 4.41
2272 2374 0.322648 TGCTGCTTCTGCTTCTGCTA 59.677 50.000 0.00 0.00 40.48 3.49
2312 2426 3.556633 CCTCTTCTTCTGCTTCTGCTTCA 60.557 47.826 0.00 0.00 40.48 3.02
2323 2437 3.701040 CCTCTTCCTCTCCTCTTCTTCTG 59.299 52.174 0.00 0.00 0.00 3.02
2330 2450 3.793827 AGATCTTCCTCTTCCTCTCCTCT 59.206 47.826 0.00 0.00 0.00 3.69
2331 2451 3.891366 CAGATCTTCCTCTTCCTCTCCTC 59.109 52.174 0.00 0.00 0.00 3.71
2332 2452 3.374098 CCAGATCTTCCTCTTCCTCTCCT 60.374 52.174 0.00 0.00 0.00 3.69
2333 2453 2.965147 CCAGATCTTCCTCTTCCTCTCC 59.035 54.545 0.00 0.00 0.00 3.71
2334 2454 3.642141 ACCAGATCTTCCTCTTCCTCTC 58.358 50.000 0.00 0.00 0.00 3.20
2406 2532 9.817809 TTCATCCTAACTACTATCAAATGACAC 57.182 33.333 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.