Multiple sequence alignment - TraesCS7D01G420600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G420600 chr7D 100.000 3334 0 0 1 3334 540441527 540444860 0.000000e+00 6157.0
1 TraesCS7D01G420600 chr7D 97.215 2729 48 18 607 3334 526288225 526290926 0.000000e+00 4593.0
2 TraesCS7D01G420600 chr7D 92.994 157 11 0 451 607 385008892 385009048 2.590000e-56 230.0
3 TraesCS7D01G420600 chr6D 98.352 2730 28 8 607 3334 175423683 175426397 0.000000e+00 4776.0
4 TraesCS7D01G420600 chr6D 97.216 2730 38 12 606 3334 438338929 438336237 0.000000e+00 4586.0
5 TraesCS7D01G420600 chr6D 92.751 607 34 1 1 607 209443665 209443069 0.000000e+00 869.0
6 TraesCS7D01G420600 chr6D 94.268 157 9 0 451 607 444659967 444660123 1.200000e-59 241.0
7 TraesCS7D01G420600 chr6D 93.631 157 10 0 451 607 176221431 176221587 5.560000e-58 235.0
8 TraesCS7D01G420600 chr6D 95.489 133 6 0 275 407 79365519 79365387 2.610000e-51 213.0
9 TraesCS7D01G420600 chr6D 95.489 133 6 0 275 407 279643932 279643800 2.610000e-51 213.0
10 TraesCS7D01G420600 chr6D 94.245 139 8 0 269 407 382486924 382487062 2.610000e-51 213.0
11 TraesCS7D01G420600 chr3D 97.326 2730 49 15 606 3334 532071288 532068582 0.000000e+00 4615.0
12 TraesCS7D01G420600 chr3D 94.918 2794 65 34 607 3334 20288618 20291400 0.000000e+00 4301.0
13 TraesCS7D01G420600 chr3D 94.156 154 9 0 454 607 164716760 164716607 5.560000e-58 235.0
14 TraesCS7D01G420600 chr4D 97.254 2731 50 15 606 3334 391455570 391458277 0.000000e+00 4604.0
15 TraesCS7D01G420600 chr4D 95.477 199 9 0 403 601 451177667 451177865 5.370000e-83 318.0
16 TraesCS7D01G420600 chr4D 94.964 139 7 0 269 407 403284267 403284405 5.600000e-53 219.0
17 TraesCS7D01G420600 chr4D 94.245 139 8 0 269 407 222464823 222464961 2.610000e-51 213.0
18 TraesCS7D01G420600 chr5D 97.215 2729 37 13 607 3334 430983990 430981300 0.000000e+00 4582.0
19 TraesCS7D01G420600 chr5D 92.994 157 11 0 451 607 508293732 508293888 2.590000e-56 230.0
20 TraesCS7D01G420600 chr2D 96.793 2744 52 15 607 3334 147381591 147378868 0.000000e+00 4547.0
21 TraesCS7D01G420600 chr2D 97.137 2655 42 6 607 3260 7525689 7523068 0.000000e+00 4451.0
22 TraesCS7D01G420600 chr2D 96.469 878 22 7 2465 3334 568355889 568355013 0.000000e+00 1441.0
23 TraesCS7D01G420600 chr2D 98.000 50 1 0 3285 3334 7523081 7523032 1.650000e-13 87.9
24 TraesCS7D01G420600 chr4A 89.550 2775 178 56 607 3298 521945178 521947923 0.000000e+00 3415.0
25 TraesCS7D01G420600 chr4A 96.585 205 7 0 403 607 15767845 15767641 1.150000e-89 340.0
26 TraesCS7D01G420600 chr5A 89.854 1981 130 39 607 2541 647551125 647553080 0.000000e+00 2479.0
27 TraesCS7D01G420600 chr2B 92.047 1534 79 19 1725 3236 69353006 69354518 0.000000e+00 2117.0
28 TraesCS7D01G420600 chr7A 95.781 237 10 0 1 237 366389050 366389286 1.880000e-102 383.0
29 TraesCS7D01G420600 chr4B 96.098 205 8 0 403 607 564395137 564395341 5.330000e-88 335.0
30 TraesCS7D01G420600 chr7B 92.275 233 18 0 3 235 206435555 206435323 6.890000e-87 331.0
31 TraesCS7D01G420600 chr3A 89.418 189 16 2 14 198 697743264 697743452 5.560000e-58 235.0
32 TraesCS7D01G420600 chr1A 95.652 138 6 0 270 407 550145920 550146057 4.330000e-54 222.0
33 TraesCS7D01G420600 chr1D 94.964 139 7 0 269 407 54570866 54571004 5.600000e-53 219.0
34 TraesCS7D01G420600 chr1D 94.245 139 8 0 269 407 396572228 396572366 2.610000e-51 213.0
35 TraesCS7D01G420600 chr2A 81.675 191 19 8 14 196 484996577 484996759 9.640000e-31 145.0
36 TraesCS7D01G420600 chr3B 92.157 51 1 1 3284 3334 470858311 470858358 5.970000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G420600 chr7D 540441527 540444860 3333 False 6157.00 6157 100.0000 1 3334 1 chr7D.!!$F3 3333
1 TraesCS7D01G420600 chr7D 526288225 526290926 2701 False 4593.00 4593 97.2150 607 3334 1 chr7D.!!$F2 2727
2 TraesCS7D01G420600 chr6D 175423683 175426397 2714 False 4776.00 4776 98.3520 607 3334 1 chr6D.!!$F1 2727
3 TraesCS7D01G420600 chr6D 438336237 438338929 2692 True 4586.00 4586 97.2160 606 3334 1 chr6D.!!$R4 2728
4 TraesCS7D01G420600 chr6D 209443069 209443665 596 True 869.00 869 92.7510 1 607 1 chr6D.!!$R2 606
5 TraesCS7D01G420600 chr3D 532068582 532071288 2706 True 4615.00 4615 97.3260 606 3334 1 chr3D.!!$R2 2728
6 TraesCS7D01G420600 chr3D 20288618 20291400 2782 False 4301.00 4301 94.9180 607 3334 1 chr3D.!!$F1 2727
7 TraesCS7D01G420600 chr4D 391455570 391458277 2707 False 4604.00 4604 97.2540 606 3334 1 chr4D.!!$F2 2728
8 TraesCS7D01G420600 chr5D 430981300 430983990 2690 True 4582.00 4582 97.2150 607 3334 1 chr5D.!!$R1 2727
9 TraesCS7D01G420600 chr2D 147378868 147381591 2723 True 4547.00 4547 96.7930 607 3334 1 chr2D.!!$R1 2727
10 TraesCS7D01G420600 chr2D 7523032 7525689 2657 True 2269.45 4451 97.5685 607 3334 2 chr2D.!!$R3 2727
11 TraesCS7D01G420600 chr2D 568355013 568355889 876 True 1441.00 1441 96.4690 2465 3334 1 chr2D.!!$R2 869
12 TraesCS7D01G420600 chr4A 521945178 521947923 2745 False 3415.00 3415 89.5500 607 3298 1 chr4A.!!$F1 2691
13 TraesCS7D01G420600 chr5A 647551125 647553080 1955 False 2479.00 2479 89.8540 607 2541 1 chr5A.!!$F1 1934
14 TraesCS7D01G420600 chr2B 69353006 69354518 1512 False 2117.00 2117 92.0470 1725 3236 1 chr2B.!!$F1 1511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.108138 AGACTCCAGCGAAAATCCCG 60.108 55.000 0.00 0.00 0.00 5.14 F
446 447 0.179034 GGATGCGAGATTGGCCTTCT 60.179 55.000 3.32 6.37 0.00 2.85 F
610 611 0.185175 TGGCGGCCTCATAGAGAGTA 59.815 55.000 21.46 0.00 43.12 2.59 F
1426 1447 2.434428 CAACTTGAGCTTGCTCATCCT 58.566 47.619 23.50 9.82 32.91 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1463 1484 1.043022 ACAGGCCCTTCAAAAGCAAG 58.957 50.000 0.0 0.0 0.00 4.01 R
2077 2195 3.031013 GCTTTCTCCTCTAGCTCCTTCT 58.969 50.000 0.0 0.0 32.26 2.85 R
2079 2197 3.114643 AGCTTTCTCCTCTAGCTCCTT 57.885 47.619 0.0 0.0 41.15 3.36 R
2733 2935 1.003718 GCGGCTGGTGGAGTAACTT 60.004 57.895 0.0 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.366916 AGCTAATCATTCACCTCTCCCG 59.633 50.000 0.00 0.00 0.00 5.14
35 36 2.548920 GCTAATCATTCACCTCTCCCGG 60.549 54.545 0.00 0.00 0.00 5.73
40 41 0.909610 ATTCACCTCTCCCGGAGCAA 60.910 55.000 9.87 0.00 40.57 3.91
41 42 1.125093 TTCACCTCTCCCGGAGCAAA 61.125 55.000 9.87 0.00 40.57 3.68
42 43 1.376037 CACCTCTCCCGGAGCAAAC 60.376 63.158 9.87 0.00 40.57 2.93
43 44 2.125512 CCTCTCCCGGAGCAAACG 60.126 66.667 9.87 0.00 40.57 3.60
44 45 2.646175 CCTCTCCCGGAGCAAACGA 61.646 63.158 9.87 0.00 40.57 3.85
45 46 1.446272 CTCTCCCGGAGCAAACGAC 60.446 63.158 9.87 0.00 35.08 4.34
46 47 2.809601 CTCCCGGAGCAAACGACG 60.810 66.667 0.73 0.00 0.00 5.12
47 48 3.277211 CTCCCGGAGCAAACGACGA 62.277 63.158 0.73 0.00 0.00 4.20
48 49 2.809601 CCCGGAGCAAACGACGAG 60.810 66.667 0.73 0.00 0.00 4.18
49 50 3.479269 CCGGAGCAAACGACGAGC 61.479 66.667 0.00 2.46 0.00 5.03
50 51 2.733218 CGGAGCAAACGACGAGCA 60.733 61.111 0.00 0.00 0.00 4.26
51 52 2.307309 CGGAGCAAACGACGAGCAA 61.307 57.895 0.00 0.00 0.00 3.91
52 53 1.493311 GGAGCAAACGACGAGCAAG 59.507 57.895 0.00 0.00 0.00 4.01
53 54 1.154580 GAGCAAACGACGAGCAAGC 60.155 57.895 0.00 0.00 0.00 4.01
54 55 1.831389 GAGCAAACGACGAGCAAGCA 61.831 55.000 0.00 0.00 0.00 3.91
55 56 1.722507 GCAAACGACGAGCAAGCAC 60.723 57.895 0.00 0.00 0.00 4.40
56 57 1.437089 CAAACGACGAGCAAGCACG 60.437 57.895 10.21 10.21 36.19 5.34
57 58 3.223435 AAACGACGAGCAAGCACGC 62.223 57.895 11.61 4.41 33.54 5.34
60 61 3.782244 GACGAGCAAGCACGCCAG 61.782 66.667 11.61 0.00 33.54 4.85
61 62 4.609018 ACGAGCAAGCACGCCAGT 62.609 61.111 11.61 0.00 33.54 4.00
62 63 2.432456 CGAGCAAGCACGCCAGTA 60.432 61.111 0.00 0.00 0.00 2.74
63 64 2.447887 CGAGCAAGCACGCCAGTAG 61.448 63.158 0.00 0.00 0.00 2.57
64 65 1.079819 GAGCAAGCACGCCAGTAGA 60.080 57.895 0.00 0.00 0.00 2.59
65 66 1.079543 AGCAAGCACGCCAGTAGAG 60.080 57.895 0.00 0.00 0.00 2.43
66 67 2.744768 GCAAGCACGCCAGTAGAGC 61.745 63.158 0.00 0.00 0.00 4.09
67 68 2.103042 CAAGCACGCCAGTAGAGCC 61.103 63.158 0.00 0.00 0.00 4.70
68 69 3.649277 AAGCACGCCAGTAGAGCCG 62.649 63.158 0.00 0.00 0.00 5.52
72 73 4.148825 CGCCAGTAGAGCCGCCTT 62.149 66.667 0.00 0.00 0.00 4.35
73 74 2.512515 GCCAGTAGAGCCGCCTTG 60.513 66.667 0.00 0.00 0.00 3.61
74 75 3.019003 GCCAGTAGAGCCGCCTTGA 62.019 63.158 0.00 0.00 0.00 3.02
75 76 1.142748 CCAGTAGAGCCGCCTTGAG 59.857 63.158 0.00 0.00 0.00 3.02
76 77 1.520342 CAGTAGAGCCGCCTTGAGC 60.520 63.158 0.00 0.00 38.52 4.26
77 78 1.984570 AGTAGAGCCGCCTTGAGCA 60.985 57.895 0.00 0.00 44.04 4.26
78 79 1.079127 GTAGAGCCGCCTTGAGCAA 60.079 57.895 0.00 0.00 44.04 3.91
79 80 1.079127 TAGAGCCGCCTTGAGCAAC 60.079 57.895 0.00 0.00 44.04 4.17
80 81 2.521958 TAGAGCCGCCTTGAGCAACC 62.522 60.000 0.00 0.00 44.04 3.77
100 101 4.147449 CGACGCTCCATGCCCTGA 62.147 66.667 0.00 0.00 38.78 3.86
101 102 2.268920 GACGCTCCATGCCCTGAA 59.731 61.111 0.00 0.00 38.78 3.02
102 103 1.377202 GACGCTCCATGCCCTGAAA 60.377 57.895 0.00 0.00 38.78 2.69
103 104 1.648467 GACGCTCCATGCCCTGAAAC 61.648 60.000 0.00 0.00 38.78 2.78
104 105 1.377725 CGCTCCATGCCCTGAAACT 60.378 57.895 0.00 0.00 38.78 2.66
105 106 0.962356 CGCTCCATGCCCTGAAACTT 60.962 55.000 0.00 0.00 38.78 2.66
106 107 1.678728 CGCTCCATGCCCTGAAACTTA 60.679 52.381 0.00 0.00 38.78 2.24
107 108 2.446435 GCTCCATGCCCTGAAACTTAA 58.554 47.619 0.00 0.00 35.15 1.85
108 109 2.424956 GCTCCATGCCCTGAAACTTAAG 59.575 50.000 0.00 0.00 35.15 1.85
109 110 3.873801 GCTCCATGCCCTGAAACTTAAGA 60.874 47.826 10.09 0.00 35.15 2.10
110 111 3.944015 CTCCATGCCCTGAAACTTAAGAG 59.056 47.826 10.09 0.00 0.00 2.85
111 112 3.587061 TCCATGCCCTGAAACTTAAGAGA 59.413 43.478 10.09 0.00 0.00 3.10
112 113 3.944015 CCATGCCCTGAAACTTAAGAGAG 59.056 47.826 10.09 0.00 0.00 3.20
113 114 4.323792 CCATGCCCTGAAACTTAAGAGAGA 60.324 45.833 10.09 0.00 0.00 3.10
114 115 4.974645 TGCCCTGAAACTTAAGAGAGAA 57.025 40.909 10.09 0.00 0.00 2.87
115 116 5.304686 TGCCCTGAAACTTAAGAGAGAAA 57.695 39.130 10.09 0.00 0.00 2.52
116 117 5.690865 TGCCCTGAAACTTAAGAGAGAAAA 58.309 37.500 10.09 0.00 0.00 2.29
117 118 6.306987 TGCCCTGAAACTTAAGAGAGAAAAT 58.693 36.000 10.09 0.00 0.00 1.82
118 119 6.431234 TGCCCTGAAACTTAAGAGAGAAAATC 59.569 38.462 10.09 0.00 0.00 2.17
119 120 6.431234 GCCCTGAAACTTAAGAGAGAAAATCA 59.569 38.462 10.09 1.26 0.00 2.57
120 121 7.361628 GCCCTGAAACTTAAGAGAGAAAATCAG 60.362 40.741 10.09 9.64 0.00 2.90
121 122 7.880195 CCCTGAAACTTAAGAGAGAAAATCAGA 59.120 37.037 10.09 0.00 34.06 3.27
122 123 8.934825 CCTGAAACTTAAGAGAGAAAATCAGAG 58.065 37.037 10.09 2.63 34.06 3.35
123 124 9.487790 CTGAAACTTAAGAGAGAAAATCAGAGT 57.512 33.333 10.09 0.00 34.06 3.24
128 129 9.528489 ACTTAAGAGAGAAAATCAGAGTAGACT 57.472 33.333 10.09 0.00 0.00 3.24
130 131 7.404671 AAGAGAGAAAATCAGAGTAGACTCC 57.595 40.000 6.05 0.00 43.88 3.85
131 132 6.489603 AGAGAGAAAATCAGAGTAGACTCCA 58.510 40.000 6.05 0.00 43.88 3.86
132 133 6.603201 AGAGAGAAAATCAGAGTAGACTCCAG 59.397 42.308 6.05 0.25 43.88 3.86
133 134 5.127031 AGAGAAAATCAGAGTAGACTCCAGC 59.873 44.000 6.05 0.00 43.88 4.85
134 135 3.791973 AAATCAGAGTAGACTCCAGCG 57.208 47.619 6.05 0.00 43.88 5.18
135 136 2.719531 ATCAGAGTAGACTCCAGCGA 57.280 50.000 6.05 0.00 43.88 4.93
136 137 2.491675 TCAGAGTAGACTCCAGCGAA 57.508 50.000 6.05 0.00 43.88 4.70
137 138 2.791655 TCAGAGTAGACTCCAGCGAAA 58.208 47.619 6.05 0.00 43.88 3.46
138 139 3.154710 TCAGAGTAGACTCCAGCGAAAA 58.845 45.455 6.05 0.00 43.88 2.29
139 140 3.764434 TCAGAGTAGACTCCAGCGAAAAT 59.236 43.478 6.05 0.00 43.88 1.82
140 141 4.109050 CAGAGTAGACTCCAGCGAAAATC 58.891 47.826 6.05 0.00 43.88 2.17
141 142 3.131400 AGAGTAGACTCCAGCGAAAATCC 59.869 47.826 6.05 0.00 43.88 3.01
142 143 2.168728 AGTAGACTCCAGCGAAAATCCC 59.831 50.000 0.00 0.00 0.00 3.85
143 144 0.108138 AGACTCCAGCGAAAATCCCG 60.108 55.000 0.00 0.00 0.00 5.14
149 150 4.709982 GCGAAAATCCCGCCAATC 57.290 55.556 0.00 0.00 46.22 2.67
150 151 2.106844 GCGAAAATCCCGCCAATCT 58.893 52.632 0.00 0.00 46.22 2.40
151 152 0.455815 GCGAAAATCCCGCCAATCTT 59.544 50.000 0.00 0.00 46.22 2.40
152 153 1.673920 GCGAAAATCCCGCCAATCTTA 59.326 47.619 0.00 0.00 46.22 2.10
153 154 2.287009 GCGAAAATCCCGCCAATCTTAG 60.287 50.000 0.00 0.00 46.22 2.18
154 155 2.287009 CGAAAATCCCGCCAATCTTAGC 60.287 50.000 0.00 0.00 0.00 3.09
159 160 3.485110 CGCCAATCTTAGCGCACA 58.515 55.556 11.47 0.00 46.50 4.57
160 161 1.349627 CGCCAATCTTAGCGCACAG 59.650 57.895 11.47 4.56 46.50 3.66
161 162 1.723870 GCCAATCTTAGCGCACAGG 59.276 57.895 11.47 2.17 0.00 4.00
162 163 0.744414 GCCAATCTTAGCGCACAGGA 60.744 55.000 11.47 2.75 0.00 3.86
163 164 1.293924 CCAATCTTAGCGCACAGGAG 58.706 55.000 11.47 0.00 0.00 3.69
164 165 0.654683 CAATCTTAGCGCACAGGAGC 59.345 55.000 11.47 0.00 40.48 4.70
165 166 0.462759 AATCTTAGCGCACAGGAGCC 60.463 55.000 11.47 0.00 41.17 4.70
166 167 1.617018 ATCTTAGCGCACAGGAGCCA 61.617 55.000 11.47 0.00 41.17 4.75
167 168 2.047274 TTAGCGCACAGGAGCCAC 60.047 61.111 11.47 0.00 41.17 5.01
168 169 3.932580 TTAGCGCACAGGAGCCACG 62.933 63.158 11.47 0.00 41.17 4.94
171 172 4.680237 CGCACAGGAGCCACGGAA 62.680 66.667 0.00 0.00 0.00 4.30
172 173 2.045926 GCACAGGAGCCACGGAAT 60.046 61.111 0.00 0.00 0.00 3.01
173 174 2.109126 GCACAGGAGCCACGGAATC 61.109 63.158 0.00 0.00 0.00 2.52
174 175 1.811266 CACAGGAGCCACGGAATCG 60.811 63.158 0.00 0.00 43.02 3.34
175 176 2.892425 CAGGAGCCACGGAATCGC 60.892 66.667 0.00 0.00 40.63 4.58
176 177 4.162690 AGGAGCCACGGAATCGCC 62.163 66.667 0.00 0.00 40.63 5.54
177 178 4.162690 GGAGCCACGGAATCGCCT 62.163 66.667 0.00 0.00 40.63 5.52
178 179 2.125106 GAGCCACGGAATCGCCTT 60.125 61.111 0.00 0.00 40.63 4.35
179 180 1.143183 GAGCCACGGAATCGCCTTA 59.857 57.895 0.00 0.00 40.63 2.69
180 181 1.152383 GAGCCACGGAATCGCCTTAC 61.152 60.000 0.00 0.00 40.63 2.34
181 182 2.178235 GCCACGGAATCGCCTTACC 61.178 63.158 0.00 0.00 40.63 2.85
184 185 2.809706 CGGAATCGCCTTACCGGA 59.190 61.111 9.46 0.00 41.41 5.14
185 186 1.299926 CGGAATCGCCTTACCGGAG 60.300 63.158 9.46 0.00 41.41 4.63
204 205 3.196613 GGCCGAATCGCCTTACTAG 57.803 57.895 0.00 0.00 46.10 2.57
205 206 0.672342 GGCCGAATCGCCTTACTAGA 59.328 55.000 0.00 0.00 46.10 2.43
206 207 1.336056 GGCCGAATCGCCTTACTAGAG 60.336 57.143 0.00 0.00 46.10 2.43
207 208 1.931263 GCCGAATCGCCTTACTAGAGC 60.931 57.143 0.00 0.00 0.00 4.09
208 209 1.336056 CCGAATCGCCTTACTAGAGCC 60.336 57.143 0.00 0.00 0.00 4.70
209 210 1.663445 CGAATCGCCTTACTAGAGCCG 60.663 57.143 0.00 0.00 0.00 5.52
210 211 0.674534 AATCGCCTTACTAGAGCCGG 59.325 55.000 0.00 0.00 0.00 6.13
211 212 1.179814 ATCGCCTTACTAGAGCCGGG 61.180 60.000 2.18 0.00 0.00 5.73
212 213 2.857744 CGCCTTACTAGAGCCGGGG 61.858 68.421 2.18 0.00 0.00 5.73
213 214 1.457079 GCCTTACTAGAGCCGGGGA 60.457 63.158 2.18 0.00 0.00 4.81
214 215 1.047034 GCCTTACTAGAGCCGGGGAA 61.047 60.000 2.18 0.00 0.00 3.97
215 216 1.718280 CCTTACTAGAGCCGGGGAAT 58.282 55.000 2.18 0.00 0.00 3.01
216 217 1.344763 CCTTACTAGAGCCGGGGAATG 59.655 57.143 2.18 0.00 0.00 2.67
217 218 2.040178 CTTACTAGAGCCGGGGAATGT 58.960 52.381 2.18 0.00 0.00 2.71
218 219 1.410004 TACTAGAGCCGGGGAATGTG 58.590 55.000 2.18 0.00 0.00 3.21
219 220 1.227674 CTAGAGCCGGGGAATGTGC 60.228 63.158 2.18 0.00 0.00 4.57
220 221 2.666596 CTAGAGCCGGGGAATGTGCC 62.667 65.000 2.18 0.00 0.00 5.01
225 226 4.444838 CGGGGAATGTGCCGACGA 62.445 66.667 0.00 0.00 32.81 4.20
226 227 2.189521 GGGGAATGTGCCGACGAT 59.810 61.111 0.00 0.00 0.00 3.73
227 228 1.887707 GGGGAATGTGCCGACGATC 60.888 63.158 0.00 0.00 0.00 3.69
228 229 1.887707 GGGAATGTGCCGACGATCC 60.888 63.158 0.00 0.00 0.00 3.36
229 230 1.153449 GGAATGTGCCGACGATCCA 60.153 57.895 0.00 0.00 32.30 3.41
230 231 1.154205 GGAATGTGCCGACGATCCAG 61.154 60.000 0.00 0.00 32.30 3.86
231 232 1.766143 GAATGTGCCGACGATCCAGC 61.766 60.000 0.00 0.00 0.00 4.85
232 233 2.520465 AATGTGCCGACGATCCAGCA 62.520 55.000 0.00 0.00 0.00 4.41
233 234 2.202932 GTGCCGACGATCCAGCAT 60.203 61.111 0.00 0.00 37.60 3.79
234 235 1.815421 GTGCCGACGATCCAGCATT 60.815 57.895 0.00 0.00 37.60 3.56
235 236 0.529773 GTGCCGACGATCCAGCATTA 60.530 55.000 0.00 0.00 37.60 1.90
236 237 0.392706 TGCCGACGATCCAGCATTAT 59.607 50.000 0.00 0.00 0.00 1.28
237 238 1.071605 GCCGACGATCCAGCATTATC 58.928 55.000 0.00 0.00 0.00 1.75
238 239 1.714794 CCGACGATCCAGCATTATCC 58.285 55.000 0.00 0.00 0.00 2.59
239 240 1.000843 CCGACGATCCAGCATTATCCA 59.999 52.381 0.00 0.00 0.00 3.41
240 241 2.332104 CGACGATCCAGCATTATCCAG 58.668 52.381 0.00 0.00 0.00 3.86
241 242 2.072298 GACGATCCAGCATTATCCAGC 58.928 52.381 0.00 0.00 0.00 4.85
242 243 1.417517 ACGATCCAGCATTATCCAGCA 59.582 47.619 0.00 0.00 0.00 4.41
243 244 2.039480 ACGATCCAGCATTATCCAGCAT 59.961 45.455 0.00 0.00 0.00 3.79
244 245 3.079578 CGATCCAGCATTATCCAGCATT 58.920 45.455 0.00 0.00 0.00 3.56
245 246 4.256110 CGATCCAGCATTATCCAGCATTA 58.744 43.478 0.00 0.00 0.00 1.90
246 247 4.880120 CGATCCAGCATTATCCAGCATTAT 59.120 41.667 0.00 0.00 0.00 1.28
247 248 5.007430 CGATCCAGCATTATCCAGCATTATC 59.993 44.000 0.00 0.00 0.00 1.75
248 249 4.592942 TCCAGCATTATCCAGCATTATCC 58.407 43.478 0.00 0.00 0.00 2.59
249 250 4.043184 TCCAGCATTATCCAGCATTATCCA 59.957 41.667 0.00 0.00 0.00 3.41
250 251 4.954202 CCAGCATTATCCAGCATTATCCAT 59.046 41.667 0.00 0.00 0.00 3.41
251 252 5.421056 CCAGCATTATCCAGCATTATCCATT 59.579 40.000 0.00 0.00 0.00 3.16
252 253 6.604396 CCAGCATTATCCAGCATTATCCATTA 59.396 38.462 0.00 0.00 0.00 1.90
253 254 7.415989 CCAGCATTATCCAGCATTATCCATTAC 60.416 40.741 0.00 0.00 0.00 1.89
254 255 6.604795 AGCATTATCCAGCATTATCCATTACC 59.395 38.462 0.00 0.00 0.00 2.85
255 256 6.604795 GCATTATCCAGCATTATCCATTACCT 59.395 38.462 0.00 0.00 0.00 3.08
256 257 7.201767 GCATTATCCAGCATTATCCATTACCTC 60.202 40.741 0.00 0.00 0.00 3.85
257 258 5.848286 ATCCAGCATTATCCATTACCTCA 57.152 39.130 0.00 0.00 0.00 3.86
258 259 5.848286 TCCAGCATTATCCATTACCTCAT 57.152 39.130 0.00 0.00 0.00 2.90
259 260 6.950860 TCCAGCATTATCCATTACCTCATA 57.049 37.500 0.00 0.00 0.00 2.15
260 261 6.950842 TCCAGCATTATCCATTACCTCATAG 58.049 40.000 0.00 0.00 0.00 2.23
261 262 5.587844 CCAGCATTATCCATTACCTCATAGC 59.412 44.000 0.00 0.00 0.00 2.97
262 263 6.175471 CAGCATTATCCATTACCTCATAGCA 58.825 40.000 0.00 0.00 0.00 3.49
263 264 6.827251 CAGCATTATCCATTACCTCATAGCAT 59.173 38.462 0.00 0.00 0.00 3.79
264 265 7.012138 CAGCATTATCCATTACCTCATAGCATC 59.988 40.741 0.00 0.00 0.00 3.91
265 266 6.018425 GCATTATCCATTACCTCATAGCATCG 60.018 42.308 0.00 0.00 0.00 3.84
266 267 3.961480 TCCATTACCTCATAGCATCGG 57.039 47.619 0.00 0.00 0.00 4.18
267 268 2.028112 TCCATTACCTCATAGCATCGGC 60.028 50.000 0.00 0.00 41.61 5.54
268 269 2.350522 CATTACCTCATAGCATCGGCC 58.649 52.381 0.00 0.00 42.56 6.13
269 270 1.419381 TTACCTCATAGCATCGGCCA 58.581 50.000 2.24 0.00 42.56 5.36
270 271 0.679505 TACCTCATAGCATCGGCCAC 59.320 55.000 2.24 0.00 42.56 5.01
271 272 1.665916 CCTCATAGCATCGGCCACG 60.666 63.158 2.24 0.00 42.56 4.94
285 286 4.308458 CACGAACCTGGTGGCCGA 62.308 66.667 18.84 0.00 36.81 5.54
286 287 3.319198 ACGAACCTGGTGGCCGAT 61.319 61.111 18.84 0.00 36.81 4.18
287 288 2.819595 CGAACCTGGTGGCCGATG 60.820 66.667 0.00 0.00 35.62 3.84
288 289 2.438434 GAACCTGGTGGCCGATGG 60.438 66.667 0.00 0.00 36.63 3.51
289 290 3.995506 GAACCTGGTGGCCGATGGG 62.996 68.421 0.00 0.05 36.63 4.00
344 345 4.785453 GCAAGGAGGAGGCCCGTG 62.785 72.222 0.00 0.00 37.58 4.94
345 346 4.785453 CAAGGAGGAGGCCCGTGC 62.785 72.222 0.00 0.00 37.58 5.34
359 360 4.500116 GTGCGGCGAGGAGGAGAC 62.500 72.222 12.98 0.00 0.00 3.36
363 364 4.816984 GGCGAGGAGGAGACCGGA 62.817 72.222 9.46 0.00 34.73 5.14
364 365 2.519780 GCGAGGAGGAGACCGGAT 60.520 66.667 9.46 0.00 34.73 4.18
365 366 2.557372 GCGAGGAGGAGACCGGATC 61.557 68.421 9.46 5.53 34.73 3.36
366 367 1.899534 CGAGGAGGAGACCGGATCC 60.900 68.421 19.07 19.07 37.07 3.36
367 368 1.899534 GAGGAGGAGACCGGATCCG 60.900 68.421 27.65 27.65 42.02 4.18
413 414 4.735132 CGGGCGCGAGGTTCTTGA 62.735 66.667 19.65 0.00 0.00 3.02
414 415 3.119096 GGGCGCGAGGTTCTTGAC 61.119 66.667 12.10 0.00 0.00 3.18
422 423 4.821935 GGTTCTTGACCCAGGTGG 57.178 61.111 0.00 0.00 43.06 4.61
423 424 2.151369 GGTTCTTGACCCAGGTGGA 58.849 57.895 0.00 0.00 43.06 4.02
424 425 0.698818 GGTTCTTGACCCAGGTGGAT 59.301 55.000 0.00 0.00 43.06 3.41
425 426 1.913419 GGTTCTTGACCCAGGTGGATA 59.087 52.381 0.00 0.00 43.06 2.59
426 427 2.509964 GGTTCTTGACCCAGGTGGATAT 59.490 50.000 0.00 0.00 43.06 1.63
427 428 3.545703 GTTCTTGACCCAGGTGGATATG 58.454 50.000 0.00 0.00 37.39 1.78
428 429 2.126882 TCTTGACCCAGGTGGATATGG 58.873 52.381 0.00 0.00 37.39 2.74
429 430 2.126882 CTTGACCCAGGTGGATATGGA 58.873 52.381 0.00 0.00 39.02 3.41
430 431 2.512910 TGACCCAGGTGGATATGGAT 57.487 50.000 0.00 0.00 39.02 3.41
431 432 2.057140 TGACCCAGGTGGATATGGATG 58.943 52.381 0.00 0.00 39.02 3.51
432 433 0.773644 ACCCAGGTGGATATGGATGC 59.226 55.000 0.00 0.00 39.02 3.91
433 434 0.321919 CCCAGGTGGATATGGATGCG 60.322 60.000 0.00 0.00 39.02 4.73
434 435 0.686789 CCAGGTGGATATGGATGCGA 59.313 55.000 0.00 0.00 39.02 5.10
435 436 1.338484 CCAGGTGGATATGGATGCGAG 60.338 57.143 0.00 0.00 39.02 5.03
436 437 1.620323 CAGGTGGATATGGATGCGAGA 59.380 52.381 0.00 0.00 0.00 4.04
437 438 2.235650 CAGGTGGATATGGATGCGAGAT 59.764 50.000 0.00 0.00 0.00 2.75
438 439 2.909006 AGGTGGATATGGATGCGAGATT 59.091 45.455 0.00 0.00 0.00 2.40
439 440 3.005554 GGTGGATATGGATGCGAGATTG 58.994 50.000 0.00 0.00 0.00 2.67
440 441 3.005554 GTGGATATGGATGCGAGATTGG 58.994 50.000 0.00 0.00 0.00 3.16
441 442 2.012673 GGATATGGATGCGAGATTGGC 58.987 52.381 0.00 0.00 0.00 4.52
442 443 2.012673 GATATGGATGCGAGATTGGCC 58.987 52.381 0.00 0.00 0.00 5.36
443 444 1.059098 TATGGATGCGAGATTGGCCT 58.941 50.000 3.32 0.00 0.00 5.19
444 445 0.184451 ATGGATGCGAGATTGGCCTT 59.816 50.000 3.32 0.00 0.00 4.35
445 446 0.464373 TGGATGCGAGATTGGCCTTC 60.464 55.000 3.32 0.42 0.00 3.46
446 447 0.179034 GGATGCGAGATTGGCCTTCT 60.179 55.000 3.32 6.37 0.00 2.85
447 448 0.942962 GATGCGAGATTGGCCTTCTG 59.057 55.000 12.77 7.22 0.00 3.02
448 449 0.465097 ATGCGAGATTGGCCTTCTGG 60.465 55.000 12.77 12.35 0.00 3.86
449 450 1.221840 GCGAGATTGGCCTTCTGGA 59.778 57.895 18.01 0.00 34.57 3.86
450 451 1.092345 GCGAGATTGGCCTTCTGGAC 61.092 60.000 18.01 8.71 43.36 4.02
456 457 3.069778 GGCCTTCTGGACGAGGTT 58.930 61.111 0.00 0.00 34.57 3.50
457 458 1.376037 GGCCTTCTGGACGAGGTTG 60.376 63.158 0.00 0.00 34.57 3.77
458 459 2.035442 GCCTTCTGGACGAGGTTGC 61.035 63.158 0.00 0.00 34.57 4.17
459 460 1.738099 CCTTCTGGACGAGGTTGCG 60.738 63.158 0.00 0.00 34.57 4.85
460 461 1.738099 CTTCTGGACGAGGTTGCGG 60.738 63.158 0.00 0.00 35.12 5.69
461 462 2.154798 CTTCTGGACGAGGTTGCGGA 62.155 60.000 0.00 0.00 35.12 5.54
462 463 2.125912 CTGGACGAGGTTGCGGAG 60.126 66.667 0.00 0.00 35.12 4.63
508 509 4.577246 GCGGGTAGCCTGAGCGAG 62.577 72.222 9.73 0.00 46.67 5.03
509 510 3.141488 CGGGTAGCCTGAGCGAGT 61.141 66.667 9.73 0.00 46.67 4.18
510 511 2.809010 GGGTAGCCTGAGCGAGTC 59.191 66.667 2.95 0.00 46.67 3.36
511 512 2.409651 GGTAGCCTGAGCGAGTCG 59.590 66.667 8.54 8.54 46.67 4.18
512 513 2.409651 GTAGCCTGAGCGAGTCGG 59.590 66.667 15.52 0.00 46.67 4.79
537 538 2.827642 GTCGGAGGGGTCGTCGAT 60.828 66.667 0.00 0.00 34.13 3.59
538 539 2.515523 TCGGAGGGGTCGTCGATC 60.516 66.667 0.00 0.00 0.00 3.69
539 540 3.593794 CGGAGGGGTCGTCGATCC 61.594 72.222 16.64 16.64 30.73 3.36
540 541 2.123812 GGAGGGGTCGTCGATCCT 60.124 66.667 23.44 19.71 32.50 3.24
541 542 2.491022 GGAGGGGTCGTCGATCCTG 61.491 68.421 23.44 0.00 32.50 3.86
542 543 1.453379 GAGGGGTCGTCGATCCTGA 60.453 63.158 23.44 0.00 32.50 3.86
543 544 1.448922 GAGGGGTCGTCGATCCTGAG 61.449 65.000 23.44 0.00 32.50 3.35
544 545 2.413765 GGGTCGTCGATCCTGAGC 59.586 66.667 17.61 0.00 28.56 4.26
545 546 2.413765 GGTCGTCGATCCTGAGCC 59.586 66.667 0.00 0.00 0.00 4.70
546 547 2.413765 GTCGTCGATCCTGAGCCC 59.586 66.667 0.00 0.00 0.00 5.19
547 548 3.209812 TCGTCGATCCTGAGCCCG 61.210 66.667 0.00 0.00 0.00 6.13
548 549 4.933064 CGTCGATCCTGAGCCCGC 62.933 72.222 0.00 0.00 0.00 6.13
549 550 4.933064 GTCGATCCTGAGCCCGCG 62.933 72.222 0.00 0.00 0.00 6.46
577 578 2.501610 GCAAGGGCCTCCTCGTAG 59.498 66.667 6.46 0.00 44.07 3.51
578 579 3.095347 GCAAGGGCCTCCTCGTAGG 62.095 68.421 6.46 0.00 44.07 3.18
585 586 3.823330 CTCCTCGTAGGCGCGGTT 61.823 66.667 8.83 0.00 42.98 4.44
586 587 4.124351 TCCTCGTAGGCGCGGTTG 62.124 66.667 8.83 0.00 42.98 3.77
587 588 4.430765 CCTCGTAGGCGCGGTTGT 62.431 66.667 8.83 0.00 38.11 3.32
588 589 2.879462 CTCGTAGGCGCGGTTGTC 60.879 66.667 8.83 0.00 38.14 3.18
589 590 4.764336 TCGTAGGCGCGGTTGTCG 62.764 66.667 8.83 0.35 42.76 4.35
603 604 4.221422 GTCGCTGGCGGCCTCATA 62.221 66.667 21.46 0.00 38.20 2.15
604 605 3.916544 TCGCTGGCGGCCTCATAG 61.917 66.667 21.46 10.19 40.25 2.23
605 606 3.916544 CGCTGGCGGCCTCATAGA 61.917 66.667 21.46 0.00 37.74 1.98
606 607 2.030262 GCTGGCGGCCTCATAGAG 59.970 66.667 21.46 9.02 34.27 2.43
607 608 2.502492 GCTGGCGGCCTCATAGAGA 61.502 63.158 21.46 0.00 34.27 3.10
608 609 1.664873 CTGGCGGCCTCATAGAGAG 59.335 63.158 21.46 2.18 44.31 3.20
609 610 1.075970 TGGCGGCCTCATAGAGAGT 60.076 57.895 21.46 0.00 43.12 3.24
610 611 0.185175 TGGCGGCCTCATAGAGAGTA 59.815 55.000 21.46 0.00 43.12 2.59
621 622 8.482128 GGCCTCATAGAGAGTAATAGCATAAAT 58.518 37.037 0.00 0.00 43.12 1.40
1426 1447 2.434428 CAACTTGAGCTTGCTCATCCT 58.566 47.619 23.50 9.82 32.91 3.24
1463 1484 2.866762 CAACTGAGGCCTATTAAGCGTC 59.133 50.000 4.42 0.98 43.62 5.19
1953 2018 5.625150 AGCTTAGGACTGAAAATGACAAGT 58.375 37.500 0.00 0.00 0.00 3.16
2074 2192 5.604650 AGGAGGAAGAACTTGAGAAGAAGAA 59.395 40.000 0.00 0.00 0.00 2.52
2077 2195 7.130681 AGGAAGAACTTGAGAAGAAGAAGAA 57.869 36.000 0.00 0.00 0.00 2.52
2079 2197 7.070571 AGGAAGAACTTGAGAAGAAGAAGAAGA 59.929 37.037 0.00 0.00 0.00 2.87
2733 2935 3.189646 CCACCCCCACCCTTTCCA 61.190 66.667 0.00 0.00 0.00 3.53
2854 3079 1.218585 CAGCAGCACAGAGGAGGAG 59.781 63.158 0.00 0.00 0.00 3.69
2855 3080 1.988956 AGCAGCACAGAGGAGGAGG 60.989 63.158 0.00 0.00 0.00 4.30
2856 3081 1.986757 GCAGCACAGAGGAGGAGGA 60.987 63.158 0.00 0.00 0.00 3.71
3300 3599 5.252547 TCTTATAATGCACTTGGTCAGCAA 58.747 37.500 0.00 0.00 42.15 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.574396 CGGGAGAGGTGAATGATTAGCTA 59.426 47.826 0.00 0.00 0.00 3.32
34 35 1.493311 CTTGCTCGTCGTTTGCTCC 59.507 57.895 0.00 0.00 0.00 4.70
35 36 1.154580 GCTTGCTCGTCGTTTGCTC 60.155 57.895 0.00 0.00 0.00 4.26
40 41 3.702555 GCGTGCTTGCTCGTCGTT 61.703 61.111 16.38 0.00 0.00 3.85
43 44 3.782244 CTGGCGTGCTTGCTCGTC 61.782 66.667 13.54 13.54 34.52 4.20
44 45 3.220999 TACTGGCGTGCTTGCTCGT 62.221 57.895 16.38 2.04 34.52 4.18
45 46 2.432456 TACTGGCGTGCTTGCTCG 60.432 61.111 11.91 11.91 34.52 5.03
46 47 1.079819 TCTACTGGCGTGCTTGCTC 60.080 57.895 0.92 0.00 34.52 4.26
47 48 1.079543 CTCTACTGGCGTGCTTGCT 60.080 57.895 0.92 0.00 34.52 3.91
48 49 2.744768 GCTCTACTGGCGTGCTTGC 61.745 63.158 0.00 0.00 0.00 4.01
49 50 2.103042 GGCTCTACTGGCGTGCTTG 61.103 63.158 0.00 0.00 0.00 4.01
50 51 2.266055 GGCTCTACTGGCGTGCTT 59.734 61.111 0.00 0.00 0.00 3.91
57 58 1.142748 CTCAAGGCGGCTCTACTGG 59.857 63.158 13.70 0.00 0.00 4.00
58 59 1.520342 GCTCAAGGCGGCTCTACTG 60.520 63.158 13.70 7.06 0.00 2.74
59 60 1.544825 TTGCTCAAGGCGGCTCTACT 61.545 55.000 13.70 0.00 45.43 2.57
60 61 1.079127 TTGCTCAAGGCGGCTCTAC 60.079 57.895 13.70 2.91 45.43 2.59
61 62 1.079127 GTTGCTCAAGGCGGCTCTA 60.079 57.895 13.70 1.98 45.43 2.43
62 63 2.359230 GTTGCTCAAGGCGGCTCT 60.359 61.111 13.70 0.00 45.43 4.09
63 64 3.435186 GGTTGCTCAAGGCGGCTC 61.435 66.667 13.70 0.00 45.43 4.70
69 70 3.423154 GTCGCGGGTTGCTCAAGG 61.423 66.667 6.13 0.00 43.27 3.61
70 71 3.777925 CGTCGCGGGTTGCTCAAG 61.778 66.667 6.13 0.00 43.27 3.02
87 88 2.128771 TAAGTTTCAGGGCATGGAGC 57.871 50.000 0.00 0.00 44.65 4.70
88 89 3.944015 CTCTTAAGTTTCAGGGCATGGAG 59.056 47.826 0.00 0.00 0.00 3.86
89 90 3.587061 TCTCTTAAGTTTCAGGGCATGGA 59.413 43.478 0.00 0.00 0.00 3.41
90 91 3.944015 CTCTCTTAAGTTTCAGGGCATGG 59.056 47.826 0.00 0.00 0.00 3.66
91 92 4.836825 TCTCTCTTAAGTTTCAGGGCATG 58.163 43.478 1.63 0.00 0.00 4.06
92 93 5.505181 TTCTCTCTTAAGTTTCAGGGCAT 57.495 39.130 1.63 0.00 0.00 4.40
93 94 4.974645 TTCTCTCTTAAGTTTCAGGGCA 57.025 40.909 1.63 0.00 0.00 5.36
94 95 6.431234 TGATTTTCTCTCTTAAGTTTCAGGGC 59.569 38.462 1.63 0.00 0.00 5.19
95 96 7.880195 TCTGATTTTCTCTCTTAAGTTTCAGGG 59.120 37.037 1.63 0.00 0.00 4.45
96 97 8.839310 TCTGATTTTCTCTCTTAAGTTTCAGG 57.161 34.615 1.63 0.00 0.00 3.86
97 98 9.487790 ACTCTGATTTTCTCTCTTAAGTTTCAG 57.512 33.333 1.63 5.28 0.00 3.02
102 103 9.528489 AGTCTACTCTGATTTTCTCTCTTAAGT 57.472 33.333 1.63 0.00 0.00 2.24
104 105 8.962679 GGAGTCTACTCTGATTTTCTCTCTTAA 58.037 37.037 9.84 0.00 42.48 1.85
105 106 8.110271 TGGAGTCTACTCTGATTTTCTCTCTTA 58.890 37.037 9.84 0.00 42.48 2.10
106 107 6.951198 TGGAGTCTACTCTGATTTTCTCTCTT 59.049 38.462 9.84 0.00 42.48 2.85
107 108 6.489603 TGGAGTCTACTCTGATTTTCTCTCT 58.510 40.000 9.84 0.00 42.48 3.10
108 109 6.680378 GCTGGAGTCTACTCTGATTTTCTCTC 60.680 46.154 9.84 0.00 42.48 3.20
109 110 5.127031 GCTGGAGTCTACTCTGATTTTCTCT 59.873 44.000 9.84 0.00 42.48 3.10
110 111 5.348164 GCTGGAGTCTACTCTGATTTTCTC 58.652 45.833 9.84 0.00 42.48 2.87
111 112 4.142271 CGCTGGAGTCTACTCTGATTTTCT 60.142 45.833 9.84 0.00 42.48 2.52
112 113 4.109050 CGCTGGAGTCTACTCTGATTTTC 58.891 47.826 9.84 0.00 42.48 2.29
113 114 3.764434 TCGCTGGAGTCTACTCTGATTTT 59.236 43.478 9.84 0.00 42.48 1.82
114 115 3.357203 TCGCTGGAGTCTACTCTGATTT 58.643 45.455 9.84 0.00 42.48 2.17
115 116 3.006112 TCGCTGGAGTCTACTCTGATT 57.994 47.619 9.84 0.00 42.48 2.57
116 117 2.719531 TCGCTGGAGTCTACTCTGAT 57.280 50.000 9.84 0.00 42.48 2.90
117 118 2.491675 TTCGCTGGAGTCTACTCTGA 57.508 50.000 9.84 1.56 42.48 3.27
118 119 3.577649 TTTTCGCTGGAGTCTACTCTG 57.422 47.619 9.84 5.05 42.48 3.35
119 120 3.131400 GGATTTTCGCTGGAGTCTACTCT 59.869 47.826 9.84 0.00 42.48 3.24
120 121 3.449632 GGATTTTCGCTGGAGTCTACTC 58.550 50.000 1.30 1.30 42.14 2.59
121 122 2.168728 GGGATTTTCGCTGGAGTCTACT 59.831 50.000 0.00 0.00 0.00 2.57
122 123 2.552031 GGGATTTTCGCTGGAGTCTAC 58.448 52.381 0.00 0.00 0.00 2.59
123 124 1.136305 CGGGATTTTCGCTGGAGTCTA 59.864 52.381 0.00 0.00 0.00 2.59
124 125 0.108138 CGGGATTTTCGCTGGAGTCT 60.108 55.000 0.00 0.00 0.00 3.24
125 126 2.384203 CGGGATTTTCGCTGGAGTC 58.616 57.895 0.00 0.00 0.00 3.36
126 127 4.617875 CGGGATTTTCGCTGGAGT 57.382 55.556 0.00 0.00 0.00 3.85
133 134 2.287009 GCTAAGATTGGCGGGATTTTCG 60.287 50.000 0.00 0.00 0.00 3.46
134 135 3.355626 GCTAAGATTGGCGGGATTTTC 57.644 47.619 0.00 0.00 0.00 2.29
143 144 0.744414 TCCTGTGCGCTAAGATTGGC 60.744 55.000 9.73 0.00 0.00 4.52
144 145 1.293924 CTCCTGTGCGCTAAGATTGG 58.706 55.000 9.73 1.34 0.00 3.16
145 146 0.654683 GCTCCTGTGCGCTAAGATTG 59.345 55.000 9.73 1.32 0.00 2.67
146 147 0.462759 GGCTCCTGTGCGCTAAGATT 60.463 55.000 9.73 0.00 0.00 2.40
147 148 1.144936 GGCTCCTGTGCGCTAAGAT 59.855 57.895 9.73 0.00 0.00 2.40
148 149 2.282783 TGGCTCCTGTGCGCTAAGA 61.283 57.895 9.73 0.00 0.00 2.10
149 150 2.103042 GTGGCTCCTGTGCGCTAAG 61.103 63.158 9.73 5.89 0.00 2.18
150 151 2.047274 GTGGCTCCTGTGCGCTAA 60.047 61.111 9.73 0.00 0.00 3.09
151 152 4.435436 CGTGGCTCCTGTGCGCTA 62.435 66.667 9.73 0.00 0.00 4.26
154 155 3.958147 ATTCCGTGGCTCCTGTGCG 62.958 63.158 0.00 0.00 0.00 5.34
155 156 2.045926 ATTCCGTGGCTCCTGTGC 60.046 61.111 0.00 0.00 0.00 4.57
156 157 1.811266 CGATTCCGTGGCTCCTGTG 60.811 63.158 0.00 0.00 0.00 3.66
157 158 2.579201 CGATTCCGTGGCTCCTGT 59.421 61.111 0.00 0.00 0.00 4.00
158 159 2.892425 GCGATTCCGTGGCTCCTG 60.892 66.667 0.00 0.00 38.24 3.86
159 160 4.162690 GGCGATTCCGTGGCTCCT 62.163 66.667 0.00 0.00 38.24 3.69
160 161 2.306255 TAAGGCGATTCCGTGGCTCC 62.306 60.000 0.00 0.00 40.50 4.70
161 162 1.143183 TAAGGCGATTCCGTGGCTC 59.857 57.895 0.00 0.00 40.50 4.70
162 163 1.153429 GTAAGGCGATTCCGTGGCT 60.153 57.895 0.00 0.00 43.62 4.75
163 164 2.178235 GGTAAGGCGATTCCGTGGC 61.178 63.158 0.00 0.00 40.77 5.01
164 165 1.881252 CGGTAAGGCGATTCCGTGG 60.881 63.158 3.85 0.00 40.77 4.94
165 166 1.881252 CCGGTAAGGCGATTCCGTG 60.881 63.158 0.00 0.34 41.17 4.94
166 167 2.012902 CTCCGGTAAGGCGATTCCGT 62.013 60.000 0.00 0.00 41.17 4.69
167 168 1.299926 CTCCGGTAAGGCGATTCCG 60.300 63.158 0.00 4.81 42.22 4.30
168 169 1.069258 CCTCCGGTAAGGCGATTCC 59.931 63.158 0.00 0.00 40.77 3.01
169 170 1.069258 CCCTCCGGTAAGGCGATTC 59.931 63.158 0.00 0.00 40.77 2.52
170 171 3.103091 GCCCTCCGGTAAGGCGATT 62.103 63.158 14.70 0.00 40.77 3.34
171 172 3.547513 GCCCTCCGGTAAGGCGAT 61.548 66.667 14.70 0.00 40.77 4.58
188 189 1.336056 GGCTCTAGTAAGGCGATTCGG 60.336 57.143 8.34 0.00 31.64 4.30
189 190 2.053282 GGCTCTAGTAAGGCGATTCG 57.947 55.000 0.62 0.62 31.64 3.34
195 196 1.047034 TTCCCCGGCTCTAGTAAGGC 61.047 60.000 0.00 0.00 38.41 4.35
196 197 1.344763 CATTCCCCGGCTCTAGTAAGG 59.655 57.143 0.00 0.00 0.00 2.69
197 198 2.040178 ACATTCCCCGGCTCTAGTAAG 58.960 52.381 0.00 0.00 0.00 2.34
198 199 1.760613 CACATTCCCCGGCTCTAGTAA 59.239 52.381 0.00 0.00 0.00 2.24
199 200 1.410004 CACATTCCCCGGCTCTAGTA 58.590 55.000 0.00 0.00 0.00 1.82
200 201 1.972660 GCACATTCCCCGGCTCTAGT 61.973 60.000 0.00 0.00 0.00 2.57
201 202 1.227674 GCACATTCCCCGGCTCTAG 60.228 63.158 0.00 0.00 0.00 2.43
202 203 2.742116 GGCACATTCCCCGGCTCTA 61.742 63.158 0.00 0.00 0.00 2.43
203 204 4.115199 GGCACATTCCCCGGCTCT 62.115 66.667 0.00 0.00 0.00 4.09
208 209 3.733344 ATCGTCGGCACATTCCCCG 62.733 63.158 0.00 0.00 45.64 5.73
209 210 1.887707 GATCGTCGGCACATTCCCC 60.888 63.158 0.00 0.00 0.00 4.81
210 211 1.887707 GGATCGTCGGCACATTCCC 60.888 63.158 0.00 0.00 0.00 3.97
211 212 1.153449 TGGATCGTCGGCACATTCC 60.153 57.895 0.00 0.00 0.00 3.01
212 213 1.766143 GCTGGATCGTCGGCACATTC 61.766 60.000 0.00 0.00 38.79 2.67
213 214 1.815421 GCTGGATCGTCGGCACATT 60.815 57.895 0.00 0.00 38.79 2.71
214 215 2.202932 GCTGGATCGTCGGCACAT 60.203 61.111 0.00 0.00 38.79 3.21
215 216 3.690280 TGCTGGATCGTCGGCACA 61.690 61.111 1.72 0.00 43.32 4.57
218 219 1.071605 GATAATGCTGGATCGTCGGC 58.928 55.000 0.00 0.00 39.37 5.54
219 220 1.000843 TGGATAATGCTGGATCGTCGG 59.999 52.381 0.00 0.00 0.00 4.79
220 221 2.332104 CTGGATAATGCTGGATCGTCG 58.668 52.381 0.00 0.00 0.00 5.12
221 222 2.072298 GCTGGATAATGCTGGATCGTC 58.928 52.381 0.00 0.00 0.00 4.20
222 223 1.417517 TGCTGGATAATGCTGGATCGT 59.582 47.619 0.00 0.00 0.00 3.73
223 224 2.174363 TGCTGGATAATGCTGGATCG 57.826 50.000 0.00 0.00 0.00 3.69
224 225 5.298777 GGATAATGCTGGATAATGCTGGATC 59.701 44.000 0.00 0.00 0.00 3.36
225 226 5.198965 GGATAATGCTGGATAATGCTGGAT 58.801 41.667 0.00 0.00 0.00 3.41
226 227 4.043184 TGGATAATGCTGGATAATGCTGGA 59.957 41.667 0.00 0.00 0.00 3.86
227 228 4.338012 TGGATAATGCTGGATAATGCTGG 58.662 43.478 0.00 0.00 0.00 4.85
228 229 6.525578 AATGGATAATGCTGGATAATGCTG 57.474 37.500 0.00 0.00 0.00 4.41
229 230 6.604795 GGTAATGGATAATGCTGGATAATGCT 59.395 38.462 0.00 0.00 0.00 3.79
230 231 6.604795 AGGTAATGGATAATGCTGGATAATGC 59.395 38.462 0.00 0.00 0.00 3.56
231 232 7.830697 TGAGGTAATGGATAATGCTGGATAATG 59.169 37.037 0.00 0.00 0.00 1.90
232 233 7.932134 TGAGGTAATGGATAATGCTGGATAAT 58.068 34.615 0.00 0.00 0.00 1.28
233 234 7.328404 TGAGGTAATGGATAATGCTGGATAA 57.672 36.000 0.00 0.00 0.00 1.75
234 235 6.950860 TGAGGTAATGGATAATGCTGGATA 57.049 37.500 0.00 0.00 0.00 2.59
235 236 5.848286 TGAGGTAATGGATAATGCTGGAT 57.152 39.130 0.00 0.00 0.00 3.41
236 237 5.848286 ATGAGGTAATGGATAATGCTGGA 57.152 39.130 0.00 0.00 0.00 3.86
237 238 5.587844 GCTATGAGGTAATGGATAATGCTGG 59.412 44.000 0.00 0.00 0.00 4.85
238 239 6.175471 TGCTATGAGGTAATGGATAATGCTG 58.825 40.000 0.00 0.00 0.00 4.41
239 240 6.378661 TGCTATGAGGTAATGGATAATGCT 57.621 37.500 0.00 0.00 0.00 3.79
240 241 6.018425 CGATGCTATGAGGTAATGGATAATGC 60.018 42.308 0.00 0.00 0.00 3.56
241 242 6.481313 CCGATGCTATGAGGTAATGGATAATG 59.519 42.308 0.00 0.00 0.00 1.90
242 243 6.586344 CCGATGCTATGAGGTAATGGATAAT 58.414 40.000 0.00 0.00 0.00 1.28
243 244 5.626809 GCCGATGCTATGAGGTAATGGATAA 60.627 44.000 0.00 0.00 33.53 1.75
244 245 4.141937 GCCGATGCTATGAGGTAATGGATA 60.142 45.833 0.00 0.00 33.53 2.59
245 246 3.369892 GCCGATGCTATGAGGTAATGGAT 60.370 47.826 0.00 0.00 33.53 3.41
246 247 2.028112 GCCGATGCTATGAGGTAATGGA 60.028 50.000 0.00 0.00 33.53 3.41
247 248 2.350522 GCCGATGCTATGAGGTAATGG 58.649 52.381 0.00 0.00 33.53 3.16
248 249 2.289631 TGGCCGATGCTATGAGGTAATG 60.290 50.000 0.00 0.00 37.74 1.90
249 250 1.977854 TGGCCGATGCTATGAGGTAAT 59.022 47.619 0.00 0.00 37.74 1.89
250 251 1.070134 GTGGCCGATGCTATGAGGTAA 59.930 52.381 0.00 0.00 37.74 2.85
251 252 0.679505 GTGGCCGATGCTATGAGGTA 59.320 55.000 0.00 0.00 37.74 3.08
252 253 1.447643 GTGGCCGATGCTATGAGGT 59.552 57.895 0.00 0.00 37.74 3.85
253 254 1.665916 CGTGGCCGATGCTATGAGG 60.666 63.158 0.00 0.00 37.15 3.86
254 255 0.249447 TTCGTGGCCGATGCTATGAG 60.249 55.000 0.00 0.00 43.71 2.90
255 256 0.529773 GTTCGTGGCCGATGCTATGA 60.530 55.000 0.00 0.00 43.80 2.15
256 257 1.498865 GGTTCGTGGCCGATGCTATG 61.499 60.000 0.00 0.00 43.80 2.23
257 258 1.227556 GGTTCGTGGCCGATGCTAT 60.228 57.895 0.00 0.00 43.80 2.97
258 259 2.185867 GGTTCGTGGCCGATGCTA 59.814 61.111 0.00 0.00 43.80 3.49
259 260 3.706373 AGGTTCGTGGCCGATGCT 61.706 61.111 0.00 0.00 43.80 3.79
260 261 3.499737 CAGGTTCGTGGCCGATGC 61.500 66.667 0.00 0.00 43.80 3.91
261 262 2.819595 CCAGGTTCGTGGCCGATG 60.820 66.667 0.00 0.00 43.80 3.84
262 263 3.319198 ACCAGGTTCGTGGCCGAT 61.319 61.111 10.85 0.00 43.80 4.18
263 264 4.308458 CACCAGGTTCGTGGCCGA 62.308 66.667 10.85 0.00 41.90 5.54
268 269 3.605749 ATCGGCCACCAGGTTCGTG 62.606 63.158 2.24 0.00 37.19 4.35
269 270 3.319198 ATCGGCCACCAGGTTCGT 61.319 61.111 2.24 0.00 37.19 3.85
270 271 2.819595 CATCGGCCACCAGGTTCG 60.820 66.667 2.24 0.00 37.19 3.95
271 272 2.438434 CCATCGGCCACCAGGTTC 60.438 66.667 2.24 0.00 37.19 3.62
272 273 4.047125 CCCATCGGCCACCAGGTT 62.047 66.667 2.24 0.00 37.19 3.50
316 317 4.373116 TCCTTGCCGGAGTGACGC 62.373 66.667 5.05 0.00 36.69 5.19
327 328 4.785453 CACGGGCCTCCTCCTTGC 62.785 72.222 0.84 0.00 0.00 4.01
328 329 4.785453 GCACGGGCCTCCTCCTTG 62.785 72.222 0.00 0.00 0.00 3.61
342 343 4.500116 GTCTCCTCCTCGCCGCAC 62.500 72.222 0.00 0.00 0.00 5.34
346 347 4.816984 TCCGGTCTCCTCCTCGCC 62.817 72.222 0.00 0.00 0.00 5.54
347 348 2.519780 ATCCGGTCTCCTCCTCGC 60.520 66.667 0.00 0.00 0.00 5.03
348 349 1.899534 GGATCCGGTCTCCTCCTCG 60.900 68.421 15.82 0.00 0.00 4.63
349 350 1.899534 CGGATCCGGTCTCCTCCTC 60.900 68.421 26.95 0.00 35.56 3.71
350 351 2.196229 CGGATCCGGTCTCCTCCT 59.804 66.667 26.95 0.00 35.56 3.69
396 397 4.735132 TCAAGAACCTCGCGCCCG 62.735 66.667 0.00 0.00 0.00 6.13
397 398 3.119096 GTCAAGAACCTCGCGCCC 61.119 66.667 0.00 0.00 0.00 6.13
398 399 3.119096 GGTCAAGAACCTCGCGCC 61.119 66.667 0.00 0.00 45.45 6.53
406 407 3.545703 CATATCCACCTGGGTCAAGAAC 58.454 50.000 0.00 0.00 38.11 3.01
407 408 2.509548 CCATATCCACCTGGGTCAAGAA 59.490 50.000 0.00 0.00 38.11 2.52
408 409 2.126882 CCATATCCACCTGGGTCAAGA 58.873 52.381 0.00 0.00 38.11 3.02
409 410 2.126882 TCCATATCCACCTGGGTCAAG 58.873 52.381 0.00 0.00 38.11 3.02
410 411 2.278657 TCCATATCCACCTGGGTCAA 57.721 50.000 0.00 0.00 38.11 3.18
411 412 2.057140 CATCCATATCCACCTGGGTCA 58.943 52.381 0.00 0.00 38.11 4.02
412 413 1.271597 GCATCCATATCCACCTGGGTC 60.272 57.143 0.00 0.00 38.11 4.46
413 414 0.773644 GCATCCATATCCACCTGGGT 59.226 55.000 0.00 0.00 38.11 4.51
414 415 0.321919 CGCATCCATATCCACCTGGG 60.322 60.000 0.00 0.00 35.41 4.45
415 416 0.686789 TCGCATCCATATCCACCTGG 59.313 55.000 0.00 0.00 0.00 4.45
416 417 1.620323 TCTCGCATCCATATCCACCTG 59.380 52.381 0.00 0.00 0.00 4.00
417 418 2.015456 TCTCGCATCCATATCCACCT 57.985 50.000 0.00 0.00 0.00 4.00
418 419 3.005554 CAATCTCGCATCCATATCCACC 58.994 50.000 0.00 0.00 0.00 4.61
419 420 3.005554 CCAATCTCGCATCCATATCCAC 58.994 50.000 0.00 0.00 0.00 4.02
420 421 2.616256 GCCAATCTCGCATCCATATCCA 60.616 50.000 0.00 0.00 0.00 3.41
421 422 2.012673 GCCAATCTCGCATCCATATCC 58.987 52.381 0.00 0.00 0.00 2.59
422 423 2.012673 GGCCAATCTCGCATCCATATC 58.987 52.381 0.00 0.00 0.00 1.63
423 424 1.632409 AGGCCAATCTCGCATCCATAT 59.368 47.619 5.01 0.00 0.00 1.78
424 425 1.059098 AGGCCAATCTCGCATCCATA 58.941 50.000 5.01 0.00 0.00 2.74
425 426 0.184451 AAGGCCAATCTCGCATCCAT 59.816 50.000 5.01 0.00 0.00 3.41
426 427 0.464373 GAAGGCCAATCTCGCATCCA 60.464 55.000 5.01 0.00 0.00 3.41
427 428 0.179034 AGAAGGCCAATCTCGCATCC 60.179 55.000 5.01 0.00 0.00 3.51
428 429 0.942962 CAGAAGGCCAATCTCGCATC 59.057 55.000 5.01 0.00 0.00 3.91
429 430 0.465097 CCAGAAGGCCAATCTCGCAT 60.465 55.000 5.01 0.00 0.00 4.73
430 431 1.078214 CCAGAAGGCCAATCTCGCA 60.078 57.895 5.01 0.00 0.00 5.10
431 432 1.092345 GTCCAGAAGGCCAATCTCGC 61.092 60.000 5.01 0.00 33.74 5.03
432 433 0.807667 CGTCCAGAAGGCCAATCTCG 60.808 60.000 5.01 4.68 33.74 4.04
433 434 0.537188 TCGTCCAGAAGGCCAATCTC 59.463 55.000 5.01 0.00 33.74 2.75
434 435 0.539051 CTCGTCCAGAAGGCCAATCT 59.461 55.000 5.01 5.19 33.74 2.40
435 436 0.462759 CCTCGTCCAGAAGGCCAATC 60.463 60.000 5.01 2.29 33.74 2.67
436 437 1.201429 ACCTCGTCCAGAAGGCCAAT 61.201 55.000 5.01 0.00 33.74 3.16
437 438 1.415672 AACCTCGTCCAGAAGGCCAA 61.416 55.000 5.01 0.00 33.74 4.52
438 439 1.841556 AACCTCGTCCAGAAGGCCA 60.842 57.895 5.01 0.00 33.74 5.36
439 440 1.376037 CAACCTCGTCCAGAAGGCC 60.376 63.158 0.00 0.00 33.74 5.19
440 441 2.035442 GCAACCTCGTCCAGAAGGC 61.035 63.158 0.00 0.00 33.74 4.35
441 442 1.738099 CGCAACCTCGTCCAGAAGG 60.738 63.158 0.00 0.00 0.00 3.46
442 443 1.738099 CCGCAACCTCGTCCAGAAG 60.738 63.158 0.00 0.00 0.00 2.85
443 444 2.154798 CTCCGCAACCTCGTCCAGAA 62.155 60.000 0.00 0.00 0.00 3.02
444 445 2.599281 TCCGCAACCTCGTCCAGA 60.599 61.111 0.00 0.00 0.00 3.86
445 446 2.125912 CTCCGCAACCTCGTCCAG 60.126 66.667 0.00 0.00 0.00 3.86
446 447 4.373116 GCTCCGCAACCTCGTCCA 62.373 66.667 0.00 0.00 0.00 4.02
447 448 3.991536 GAGCTCCGCAACCTCGTCC 62.992 68.421 0.87 0.00 0.00 4.79
448 449 2.507324 GAGCTCCGCAACCTCGTC 60.507 66.667 0.87 0.00 0.00 4.20
449 450 4.421479 CGAGCTCCGCAACCTCGT 62.421 66.667 8.47 0.00 42.41 4.18
487 488 3.541713 CTCAGGCTACCCGCTCCC 61.542 72.222 0.00 0.00 39.13 4.30
488 489 4.228567 GCTCAGGCTACCCGCTCC 62.229 72.222 0.00 0.00 39.13 4.70
489 490 4.577246 CGCTCAGGCTACCCGCTC 62.577 72.222 0.00 0.00 39.13 5.03
491 492 4.577246 CTCGCTCAGGCTACCCGC 62.577 72.222 0.00 0.00 35.76 6.13
492 493 3.127352 GACTCGCTCAGGCTACCCG 62.127 68.421 0.00 0.00 35.76 5.28
493 494 2.809010 GACTCGCTCAGGCTACCC 59.191 66.667 0.00 0.00 36.09 3.69
494 495 2.409651 CGACTCGCTCAGGCTACC 59.590 66.667 0.00 0.00 36.09 3.18
495 496 2.409651 CCGACTCGCTCAGGCTAC 59.590 66.667 0.00 0.00 36.09 3.58
496 497 2.829003 CCCGACTCGCTCAGGCTA 60.829 66.667 0.00 0.00 36.09 3.93
520 521 2.827642 ATCGACGACCCCTCCGAC 60.828 66.667 0.00 0.00 33.69 4.79
521 522 2.515523 GATCGACGACCCCTCCGA 60.516 66.667 0.00 0.00 35.43 4.55
522 523 3.593794 GGATCGACGACCCCTCCG 61.594 72.222 0.00 0.00 0.00 4.63
523 524 2.123812 AGGATCGACGACCCCTCC 60.124 66.667 4.06 5.83 0.00 4.30
524 525 1.448922 CTCAGGATCGACGACCCCTC 61.449 65.000 15.42 3.02 0.00 4.30
525 526 1.454111 CTCAGGATCGACGACCCCT 60.454 63.158 4.06 9.69 0.00 4.79
526 527 3.121019 CTCAGGATCGACGACCCC 58.879 66.667 4.06 7.33 0.00 4.95
527 528 2.413765 GCTCAGGATCGACGACCC 59.586 66.667 0.00 0.00 0.00 4.46
528 529 2.413765 GGCTCAGGATCGACGACC 59.586 66.667 0.00 3.93 0.00 4.79
529 530 2.413765 GGGCTCAGGATCGACGAC 59.586 66.667 0.00 0.00 0.00 4.34
530 531 3.209812 CGGGCTCAGGATCGACGA 61.210 66.667 0.00 0.00 0.00 4.20
531 532 4.933064 GCGGGCTCAGGATCGACG 62.933 72.222 0.00 0.00 0.00 5.12
532 533 4.933064 CGCGGGCTCAGGATCGAC 62.933 72.222 0.00 0.00 0.00 4.20
560 561 2.501610 CTACGAGGAGGCCCTTGC 59.498 66.667 0.00 0.00 46.15 4.01
571 572 2.879462 GACAACCGCGCCTACGAG 60.879 66.667 0.00 0.00 43.93 4.18
572 573 4.764336 CGACAACCGCGCCTACGA 62.764 66.667 0.00 0.00 43.93 3.43
586 587 4.221422 TATGAGGCCGCCAGCGAC 62.221 66.667 14.67 0.50 45.17 5.19
587 588 3.916544 CTATGAGGCCGCCAGCGA 61.917 66.667 14.67 0.00 45.17 4.93
588 589 3.855352 CTCTATGAGGCCGCCAGCG 62.855 68.421 13.15 4.75 45.17 5.18
589 590 2.030262 CTCTATGAGGCCGCCAGC 59.970 66.667 13.15 3.59 42.60 4.85
590 591 1.112315 ACTCTCTATGAGGCCGCCAG 61.112 60.000 13.15 1.00 46.72 4.85
591 592 0.185175 TACTCTCTATGAGGCCGCCA 59.815 55.000 13.15 3.31 46.72 5.69
592 593 1.329256 TTACTCTCTATGAGGCCGCC 58.671 55.000 3.22 0.00 46.72 6.13
593 594 3.428316 GCTATTACTCTCTATGAGGCCGC 60.428 52.174 0.00 0.00 46.72 6.53
594 595 3.759086 TGCTATTACTCTCTATGAGGCCG 59.241 47.826 0.00 0.00 46.72 6.13
595 596 5.930837 ATGCTATTACTCTCTATGAGGCC 57.069 43.478 0.00 0.00 46.72 5.19
596 597 9.528018 GATTTATGCTATTACTCTCTATGAGGC 57.472 37.037 0.00 0.00 46.72 4.70
621 622 7.773690 GGAATCAAAGCCCTGTAAACTAATAGA 59.226 37.037 0.00 0.00 0.00 1.98
625 626 5.636123 TGGAATCAAAGCCCTGTAAACTAA 58.364 37.500 0.00 0.00 0.00 2.24
877 882 4.363990 AGAGTGTGCGAGCGGGTG 62.364 66.667 0.00 0.00 0.00 4.61
878 883 4.057428 GAGAGTGTGCGAGCGGGT 62.057 66.667 0.00 0.00 0.00 5.28
879 884 3.691744 GAGAGAGTGTGCGAGCGGG 62.692 68.421 0.00 0.00 0.00 6.13
880 885 2.202544 GAGAGAGTGTGCGAGCGG 60.203 66.667 0.00 0.00 0.00 5.52
1463 1484 1.043022 ACAGGCCCTTCAAAAGCAAG 58.957 50.000 0.00 0.00 0.00 4.01
1953 2018 3.636300 AGCTTGGTGTACTCAATGCAAAA 59.364 39.130 11.47 0.00 0.00 2.44
2074 2192 4.601406 TTCTCCTCTAGCTCCTTCTTCT 57.399 45.455 0.00 0.00 0.00 2.85
2077 2195 3.031013 GCTTTCTCCTCTAGCTCCTTCT 58.969 50.000 0.00 0.00 32.26 2.85
2079 2197 3.114643 AGCTTTCTCCTCTAGCTCCTT 57.885 47.619 0.00 0.00 41.15 3.36
2617 2817 3.772025 CCAATAAGCCCAAATACCCACAA 59.228 43.478 0.00 0.00 0.00 3.33
2733 2935 1.003718 GCGGCTGGTGGAGTAACTT 60.004 57.895 0.00 0.00 0.00 2.66
2881 3109 3.801997 CATCCTGGGCCGCCTCTT 61.802 66.667 9.86 0.00 0.00 2.85
3160 3418 9.308000 TCCAAATCTCACAAATACTACCAAAAT 57.692 29.630 0.00 0.00 0.00 1.82
3300 3599 7.523293 TCAACACTTGATAAATTGATGGTGT 57.477 32.000 0.00 0.00 38.13 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.