Multiple sequence alignment - TraesCS7D01G420100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G420100 chr7D 100.000 5889 0 0 1 5889 539759996 539765884 0.000000e+00 10876.0
1 TraesCS7D01G420100 chr7D 91.918 1423 102 8 2309 3724 26979194 26977778 0.000000e+00 1978.0
2 TraesCS7D01G420100 chr7D 90.660 1424 116 12 2310 3725 15395573 15394159 0.000000e+00 1877.0
3 TraesCS7D01G420100 chr7D 90.486 1419 128 3 2310 3724 36520641 36522056 0.000000e+00 1866.0
4 TraesCS7D01G420100 chr7D 89.153 756 28 5 1 704 555664210 555664963 0.000000e+00 893.0
5 TraesCS7D01G420100 chr7B 90.167 1617 88 28 719 2288 582652727 582654319 0.000000e+00 2039.0
6 TraesCS7D01G420100 chr7B 93.603 891 34 8 4302 5181 582655083 582655961 0.000000e+00 1308.0
7 TraesCS7D01G420100 chr7B 84.697 660 75 4 5227 5885 582660115 582660749 2.310000e-178 636.0
8 TraesCS7D01G420100 chr7B 89.573 422 33 7 3802 4221 582654447 582654859 5.230000e-145 525.0
9 TraesCS7D01G420100 chrUn 91.924 1424 98 11 2309 3724 156741744 156743158 0.000000e+00 1977.0
10 TraesCS7D01G420100 chr6D 91.005 1423 110 10 2310 3724 346460937 346459525 0.000000e+00 1903.0
11 TraesCS7D01G420100 chr6D 85.789 760 54 19 1 708 9391620 9390863 0.000000e+00 756.0
12 TraesCS7D01G420100 chr5D 90.890 1427 109 8 2306 3725 521870375 521868963 0.000000e+00 1895.0
13 TraesCS7D01G420100 chr5D 90.583 1423 122 7 2309 3724 1726744 1725327 0.000000e+00 1875.0
14 TraesCS7D01G420100 chr5D 90.302 1423 131 6 2306 3724 432154618 432153199 0.000000e+00 1857.0
15 TraesCS7D01G420100 chr5D 88.677 733 50 15 3 706 431250326 431251054 0.000000e+00 863.0
16 TraesCS7D01G420100 chr5D 86.685 736 57 12 7 705 84341176 84340445 0.000000e+00 778.0
17 TraesCS7D01G420100 chr5D 86.184 608 34 22 1 566 475518320 475517721 3.900000e-171 612.0
18 TraesCS7D01G420100 chr2D 91.098 1393 121 1 2310 3699 372802323 372800931 0.000000e+00 1882.0
19 TraesCS7D01G420100 chr2D 92.886 731 24 8 1 705 621974720 621975448 0.000000e+00 1037.0
20 TraesCS7D01G420100 chr2D 89.036 757 30 8 1 707 57097116 57097869 0.000000e+00 889.0
21 TraesCS7D01G420100 chr2D 87.637 728 55 13 2 705 317856414 317857130 0.000000e+00 813.0
22 TraesCS7D01G420100 chr2D 83.452 423 44 18 5485 5889 589507592 589508006 2.590000e-98 370.0
23 TraesCS7D01G420100 chr1A 88.529 1421 127 16 2311 3724 2397781 2399172 0.000000e+00 1688.0
24 TraesCS7D01G420100 chr1A 85.342 614 53 23 1 590 415633114 415632514 8.440000e-168 601.0
25 TraesCS7D01G420100 chr1A 83.255 424 52 7 5479 5889 572220773 572220356 7.210000e-99 372.0
26 TraesCS7D01G420100 chr7A 95.668 554 21 3 4423 4973 620934758 620935311 0.000000e+00 887.0
27 TraesCS7D01G420100 chr7A 87.834 748 26 16 736 1450 620932007 620932722 0.000000e+00 817.0
28 TraesCS7D01G420100 chr7A 82.161 398 60 10 5496 5889 625913690 625914080 1.220000e-86 331.0
29 TraesCS7D01G420100 chr7A 87.500 288 31 5 3802 4086 620934389 620934674 1.580000e-85 327.0
30 TraesCS7D01G420100 chr7A 93.925 214 8 1 1804 2012 620933593 620933806 9.520000e-83 318.0
31 TraesCS7D01G420100 chr7A 84.387 269 17 3 2024 2288 620934013 620934260 2.120000e-59 241.0
32 TraesCS7D01G420100 chr7A 89.637 193 11 6 1540 1731 620933289 620933473 2.740000e-58 237.0
33 TraesCS7D01G420100 chr7A 75.723 346 62 17 5541 5878 190197870 190198201 2.840000e-33 154.0
34 TraesCS7D01G420100 chr7A 93.750 64 3 1 3722 3784 620934278 620934341 1.750000e-15 95.3
35 TraesCS7D01G420100 chr6B 87.775 728 57 15 5 705 534930018 534929296 0.000000e+00 822.0
36 TraesCS7D01G420100 chr3D 87.551 731 62 5 1 704 50831137 50831865 0.000000e+00 819.0
37 TraesCS7D01G420100 chr3D 84.777 381 43 14 5501 5878 608398785 608399153 9.320000e-98 368.0
38 TraesCS7D01G420100 chr3D 86.824 296 23 6 426 705 541408337 541408632 3.430000e-82 316.0
39 TraesCS7D01G420100 chr1D 91.089 606 41 2 2 596 426403419 426404022 0.000000e+00 808.0
40 TraesCS7D01G420100 chr1D 81.490 416 40 21 5479 5878 145934198 145934592 2.060000e-79 307.0
41 TraesCS7D01G420100 chr1B 91.695 590 36 2 2 580 344328799 344328212 0.000000e+00 806.0
42 TraesCS7D01G420100 chr4D 86.825 759 46 19 2 709 351533644 351534399 0.000000e+00 798.0
43 TraesCS7D01G420100 chr4D 86.581 775 30 11 1 703 467974221 467974993 0.000000e+00 787.0
44 TraesCS7D01G420100 chr4D 87.338 616 57 12 4329 4935 489742218 489742821 0.000000e+00 686.0
45 TraesCS7D01G420100 chr4D 96.233 292 11 0 1156 1447 489741049 489741340 4.130000e-131 479.0
46 TraesCS7D01G420100 chr4D 92.308 286 19 2 1168 1450 478231516 478231231 2.560000e-108 403.0
47 TraesCS7D01G420100 chr2B 86.438 730 70 12 2 704 484928154 484928881 0.000000e+00 773.0
48 TraesCS7D01G420100 chr2B 82.809 413 41 23 5496 5889 532159878 532160279 5.650000e-90 342.0
49 TraesCS7D01G420100 chr3A 86.667 720 44 10 2 671 13489507 13490224 0.000000e+00 750.0
50 TraesCS7D01G420100 chr4B 87.652 575 55 8 4350 4918 628661184 628661748 0.000000e+00 654.0
51 TraesCS7D01G420100 chr4B 95.548 292 13 0 1156 1447 628660200 628660491 8.940000e-128 468.0
52 TraesCS7D01G420100 chr4B 89.213 343 25 5 1119 1458 604533196 604532863 9.130000e-113 418.0
53 TraesCS7D01G420100 chr4A 86.852 540 61 9 4439 4973 684899728 684899194 3.930000e-166 595.0
54 TraesCS7D01G420100 chr4A 87.896 347 27 11 1107 1447 684900161 684899824 1.540000e-105 394.0
55 TraesCS7D01G420100 chr5A 81.675 764 68 28 2 706 490823154 490823904 2.380000e-158 569.0
56 TraesCS7D01G420100 chr5A 95.548 292 13 0 1156 1447 671191070 671191361 8.940000e-128 468.0
57 TraesCS7D01G420100 chr5A 81.723 383 43 15 5522 5889 546884017 546884387 1.600000e-75 294.0
58 TraesCS7D01G420100 chr3B 81.766 691 69 36 30 701 4958528 4959180 5.230000e-145 525.0
59 TraesCS7D01G420100 chr3B 81.567 689 74 33 30 701 4140468 4141120 2.430000e-143 520.0
60 TraesCS7D01G420100 chr3B 81.720 372 59 6 5496 5866 631509457 631509820 9.590000e-78 302.0
61 TraesCS7D01G420100 chr5B 80.976 410 48 16 5496 5889 356503131 356503526 1.240000e-76 298.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G420100 chr7D 539759996 539765884 5888 False 10876.000000 10876 100.000000 1 5889 1 chr7D.!!$F2 5888
1 TraesCS7D01G420100 chr7D 26977778 26979194 1416 True 1978.000000 1978 91.918000 2309 3724 1 chr7D.!!$R2 1415
2 TraesCS7D01G420100 chr7D 15394159 15395573 1414 True 1877.000000 1877 90.660000 2310 3725 1 chr7D.!!$R1 1415
3 TraesCS7D01G420100 chr7D 36520641 36522056 1415 False 1866.000000 1866 90.486000 2310 3724 1 chr7D.!!$F1 1414
4 TraesCS7D01G420100 chr7D 555664210 555664963 753 False 893.000000 893 89.153000 1 704 1 chr7D.!!$F3 703
5 TraesCS7D01G420100 chr7B 582652727 582655961 3234 False 1290.666667 2039 91.114333 719 5181 3 chr7B.!!$F2 4462
6 TraesCS7D01G420100 chr7B 582660115 582660749 634 False 636.000000 636 84.697000 5227 5885 1 chr7B.!!$F1 658
7 TraesCS7D01G420100 chrUn 156741744 156743158 1414 False 1977.000000 1977 91.924000 2309 3724 1 chrUn.!!$F1 1415
8 TraesCS7D01G420100 chr6D 346459525 346460937 1412 True 1903.000000 1903 91.005000 2310 3724 1 chr6D.!!$R2 1414
9 TraesCS7D01G420100 chr6D 9390863 9391620 757 True 756.000000 756 85.789000 1 708 1 chr6D.!!$R1 707
10 TraesCS7D01G420100 chr5D 521868963 521870375 1412 True 1895.000000 1895 90.890000 2306 3725 1 chr5D.!!$R5 1419
11 TraesCS7D01G420100 chr5D 1725327 1726744 1417 True 1875.000000 1875 90.583000 2309 3724 1 chr5D.!!$R1 1415
12 TraesCS7D01G420100 chr5D 432153199 432154618 1419 True 1857.000000 1857 90.302000 2306 3724 1 chr5D.!!$R3 1418
13 TraesCS7D01G420100 chr5D 431250326 431251054 728 False 863.000000 863 88.677000 3 706 1 chr5D.!!$F1 703
14 TraesCS7D01G420100 chr5D 84340445 84341176 731 True 778.000000 778 86.685000 7 705 1 chr5D.!!$R2 698
15 TraesCS7D01G420100 chr5D 475517721 475518320 599 True 612.000000 612 86.184000 1 566 1 chr5D.!!$R4 565
16 TraesCS7D01G420100 chr2D 372800931 372802323 1392 True 1882.000000 1882 91.098000 2310 3699 1 chr2D.!!$R1 1389
17 TraesCS7D01G420100 chr2D 621974720 621975448 728 False 1037.000000 1037 92.886000 1 705 1 chr2D.!!$F4 704
18 TraesCS7D01G420100 chr2D 57097116 57097869 753 False 889.000000 889 89.036000 1 707 1 chr2D.!!$F1 706
19 TraesCS7D01G420100 chr2D 317856414 317857130 716 False 813.000000 813 87.637000 2 705 1 chr2D.!!$F2 703
20 TraesCS7D01G420100 chr1A 2397781 2399172 1391 False 1688.000000 1688 88.529000 2311 3724 1 chr1A.!!$F1 1413
21 TraesCS7D01G420100 chr1A 415632514 415633114 600 True 601.000000 601 85.342000 1 590 1 chr1A.!!$R1 589
22 TraesCS7D01G420100 chr7A 620932007 620935311 3304 False 417.471429 887 90.385857 736 4973 7 chr7A.!!$F3 4237
23 TraesCS7D01G420100 chr6B 534929296 534930018 722 True 822.000000 822 87.775000 5 705 1 chr6B.!!$R1 700
24 TraesCS7D01G420100 chr3D 50831137 50831865 728 False 819.000000 819 87.551000 1 704 1 chr3D.!!$F1 703
25 TraesCS7D01G420100 chr1D 426403419 426404022 603 False 808.000000 808 91.089000 2 596 1 chr1D.!!$F2 594
26 TraesCS7D01G420100 chr1B 344328212 344328799 587 True 806.000000 806 91.695000 2 580 1 chr1B.!!$R1 578
27 TraesCS7D01G420100 chr4D 351533644 351534399 755 False 798.000000 798 86.825000 2 709 1 chr4D.!!$F1 707
28 TraesCS7D01G420100 chr4D 467974221 467974993 772 False 787.000000 787 86.581000 1 703 1 chr4D.!!$F2 702
29 TraesCS7D01G420100 chr4D 489741049 489742821 1772 False 582.500000 686 91.785500 1156 4935 2 chr4D.!!$F3 3779
30 TraesCS7D01G420100 chr2B 484928154 484928881 727 False 773.000000 773 86.438000 2 704 1 chr2B.!!$F1 702
31 TraesCS7D01G420100 chr3A 13489507 13490224 717 False 750.000000 750 86.667000 2 671 1 chr3A.!!$F1 669
32 TraesCS7D01G420100 chr4B 628660200 628661748 1548 False 561.000000 654 91.600000 1156 4918 2 chr4B.!!$F1 3762
33 TraesCS7D01G420100 chr4A 684899194 684900161 967 True 494.500000 595 87.374000 1107 4973 2 chr4A.!!$R1 3866
34 TraesCS7D01G420100 chr5A 490823154 490823904 750 False 569.000000 569 81.675000 2 706 1 chr5A.!!$F1 704
35 TraesCS7D01G420100 chr3B 4958528 4959180 652 False 525.000000 525 81.766000 30 701 1 chr3B.!!$F2 671
36 TraesCS7D01G420100 chr3B 4140468 4141120 652 False 520.000000 520 81.567000 30 701 1 chr3B.!!$F1 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 806 0.037232 ACACGCCCTTAGAGTTGCTC 60.037 55.0 0.00 0.00 0.00 4.26 F
716 807 0.247736 CACGCCCTTAGAGTTGCTCT 59.752 55.0 4.02 4.02 43.83 4.09 F
972 1074 0.381801 CTGCGAGCTTCTCTCCTCTC 59.618 60.0 0.00 0.00 38.62 3.20 F
2737 3689 0.613853 CGTGGAGGAACCTGGACCTA 60.614 60.0 14.68 1.52 39.86 3.08 F
3717 4678 0.032416 CGGGGGTCCTCCTCTTCTAA 60.032 60.0 6.13 0.00 33.94 2.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2297 3243 0.325765 GAGGGGGAGGAGCAGTAGTT 60.326 60.000 0.00 0.0 0.00 2.24 R
2298 3244 1.311747 GAGGGGGAGGAGCAGTAGT 59.688 63.158 0.00 0.0 0.00 2.73 R
2781 3733 0.107643 TCCACCACTCGCAAATGTCA 59.892 50.000 0.00 0.0 0.00 3.58 R
3913 4913 0.108138 ATGGACAAGGCGTGTAGAGC 60.108 55.000 5.94 0.0 41.96 4.09 R
5068 6254 0.174389 CGCACTCCTGTCTGCTACAT 59.826 55.000 0.00 0.0 37.50 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.528134 CGCCCTTCCCCTTGATCTA 58.472 57.895 0.00 0.00 0.00 1.98
58 59 0.729116 CTAGAGTCGTTTCCGGCGTA 59.271 55.000 6.01 0.00 45.26 4.42
300 327 0.529555 GCATTCTCCTCCTCTGTCGC 60.530 60.000 0.00 0.00 0.00 5.19
301 328 0.248825 CATTCTCCTCCTCTGTCGCG 60.249 60.000 0.00 0.00 0.00 5.87
456 509 2.445682 TCTCCTCCTTCCTCTGCTAC 57.554 55.000 0.00 0.00 0.00 3.58
490 543 5.361427 TGTGTACTAAGTGCAAGTGCTAAA 58.639 37.500 4.69 0.00 42.66 1.85
623 713 3.691118 ACAACTTGCAGATGTCGCATATT 59.309 39.130 0.00 0.00 39.58 1.28
626 716 4.948847 ACTTGCAGATGTCGCATATTAGA 58.051 39.130 0.00 0.00 39.58 2.10
708 799 1.600023 CAACCAAACACGCCCTTAGA 58.400 50.000 0.00 0.00 0.00 2.10
709 800 1.535462 CAACCAAACACGCCCTTAGAG 59.465 52.381 0.00 0.00 0.00 2.43
710 801 0.763035 ACCAAACACGCCCTTAGAGT 59.237 50.000 0.00 0.00 0.00 3.24
711 802 1.142262 ACCAAACACGCCCTTAGAGTT 59.858 47.619 0.00 0.00 0.00 3.01
712 803 1.535462 CCAAACACGCCCTTAGAGTTG 59.465 52.381 0.00 0.00 0.00 3.16
713 804 1.069227 CAAACACGCCCTTAGAGTTGC 60.069 52.381 0.00 0.00 0.00 4.17
714 805 0.396811 AACACGCCCTTAGAGTTGCT 59.603 50.000 0.00 0.00 0.00 3.91
715 806 0.037232 ACACGCCCTTAGAGTTGCTC 60.037 55.000 0.00 0.00 0.00 4.26
716 807 0.247736 CACGCCCTTAGAGTTGCTCT 59.752 55.000 4.02 4.02 43.83 4.09
717 808 0.977395 ACGCCCTTAGAGTTGCTCTT 59.023 50.000 3.87 0.00 41.50 2.85
721 812 3.068873 CGCCCTTAGAGTTGCTCTTATCT 59.931 47.826 3.87 0.00 41.50 1.98
762 863 1.133009 AGTCCAGACTCCAGTCCAGTT 60.133 52.381 2.96 0.00 45.85 3.16
876 977 6.203723 CCGAATCCTCTTGGAAAAGCTAATAG 59.796 42.308 0.00 0.00 46.80 1.73
935 1037 4.821589 CGCGCACTCTCTTCCCCC 62.822 72.222 8.75 0.00 0.00 5.40
936 1038 4.821589 GCGCACTCTCTTCCCCCG 62.822 72.222 0.30 0.00 0.00 5.73
937 1039 3.382832 CGCACTCTCTTCCCCCGT 61.383 66.667 0.00 0.00 0.00 5.28
938 1040 2.579738 GCACTCTCTTCCCCCGTC 59.420 66.667 0.00 0.00 0.00 4.79
939 1041 1.985116 GCACTCTCTTCCCCCGTCT 60.985 63.158 0.00 0.00 0.00 4.18
940 1042 1.950973 GCACTCTCTTCCCCCGTCTC 61.951 65.000 0.00 0.00 0.00 3.36
941 1043 1.000612 ACTCTCTTCCCCCGTCTCC 59.999 63.158 0.00 0.00 0.00 3.71
942 1044 2.044252 TCTCTTCCCCCGTCTCCG 60.044 66.667 0.00 0.00 0.00 4.63
943 1045 3.839432 CTCTTCCCCCGTCTCCGC 61.839 72.222 0.00 0.00 0.00 5.54
944 1046 4.377760 TCTTCCCCCGTCTCCGCT 62.378 66.667 0.00 0.00 0.00 5.52
972 1074 0.381801 CTGCGAGCTTCTCTCCTCTC 59.618 60.000 0.00 0.00 38.62 3.20
977 1079 3.115556 CTTCTCTCCTCTCCCGCG 58.884 66.667 0.00 0.00 0.00 6.46
1053 1180 5.064707 GCAAACTCGAGAAGTATGCCAATTA 59.935 40.000 21.68 0.00 37.17 1.40
1059 1186 6.997655 TCGAGAAGTATGCCAATTATGAGAT 58.002 36.000 0.00 0.00 0.00 2.75
1088 1215 3.825014 GCTTTGTATGGCTGATGATCCAT 59.175 43.478 0.00 0.00 44.62 3.41
1089 1216 4.082895 GCTTTGTATGGCTGATGATCCATC 60.083 45.833 0.00 0.00 41.81 3.51
1090 1217 3.323751 TGTATGGCTGATGATCCATCG 57.676 47.619 0.00 0.00 43.14 3.84
1469 1629 3.426568 GTGCGTGCCTCCTTGCTC 61.427 66.667 0.00 0.00 0.00 4.26
1475 1635 0.676151 GTGCCTCCTTGCTCCTGAAG 60.676 60.000 0.00 0.00 0.00 3.02
1675 2347 2.438434 GGCGGTGACCATTGAGGG 60.438 66.667 1.11 0.00 43.89 4.30
1680 2352 1.077429 GTGACCATTGAGGGGAGGC 60.077 63.158 0.00 0.00 43.89 4.70
1711 2383 4.021102 TCAGGTTCTTTTGGACCTCATC 57.979 45.455 0.00 0.00 0.00 2.92
1725 2430 5.116180 GGACCTCATCAATCGTGATAAACA 58.884 41.667 0.00 0.00 42.88 2.83
1738 2450 7.241663 TCGTGATAAACATTTTTCTATCGGG 57.758 36.000 0.00 0.00 0.00 5.14
1741 2453 3.775661 AAACATTTTTCTATCGGGGCG 57.224 42.857 0.00 0.00 0.00 6.13
1776 2488 5.209977 ACTTTTGCGTTCTATCGAAAAACC 58.790 37.500 0.00 0.00 41.47 3.27
1777 2489 4.815040 TTTGCGTTCTATCGAAAAACCA 57.185 36.364 0.00 0.00 35.73 3.67
1778 2490 4.815040 TTGCGTTCTATCGAAAAACCAA 57.185 36.364 0.00 0.00 0.00 3.67
1779 2491 4.815040 TGCGTTCTATCGAAAAACCAAA 57.185 36.364 0.00 0.00 0.00 3.28
1780 2492 4.529446 TGCGTTCTATCGAAAAACCAAAC 58.471 39.130 0.00 0.00 0.00 2.93
1781 2493 3.910170 GCGTTCTATCGAAAAACCAAACC 59.090 43.478 0.00 0.00 0.00 3.27
1818 2543 4.348863 AAGACCATCCTACATCATCTGC 57.651 45.455 0.00 0.00 0.00 4.26
1836 2561 6.818644 TCATCTGCAAACCTACTGATAACTTC 59.181 38.462 0.00 0.00 0.00 3.01
1871 2596 5.362105 AAACTATACCTTAACCATCGCCA 57.638 39.130 0.00 0.00 0.00 5.69
1942 2672 3.065655 GCATGTTTTGTGCCAGCATTTA 58.934 40.909 0.00 0.00 36.61 1.40
1985 2715 1.108776 GATGATGGTGGTGCATTGCT 58.891 50.000 10.49 0.00 0.00 3.91
2048 2990 4.551702 TTGTTAAGCTATCAGGAGTGCA 57.448 40.909 0.00 0.00 0.00 4.57
2053 2995 6.041979 TGTTAAGCTATCAGGAGTGCATGATA 59.958 38.462 0.00 7.37 43.14 2.15
2091 3037 4.525487 AGCTGAATCTTTGAAGATGCCAAA 59.475 37.500 6.98 0.00 44.67 3.28
2150 3096 2.096819 GGATGATAGCAAAACCGCGAAA 59.903 45.455 8.23 0.00 36.85 3.46
2157 3103 1.613270 CAAAACCGCGAAAGTATGGC 58.387 50.000 8.23 0.00 0.00 4.40
2202 3148 9.107177 CATAACTTTATGATGGGAGATATCTGC 57.893 37.037 15.45 15.45 42.38 4.26
2220 3166 9.311916 GATATCTGCTGCCTAGATGTAAAATAG 57.688 37.037 11.51 0.00 36.38 1.73
2221 3167 6.485830 TCTGCTGCCTAGATGTAAAATAGT 57.514 37.500 0.00 0.00 0.00 2.12
2222 3168 7.597288 TCTGCTGCCTAGATGTAAAATAGTA 57.403 36.000 0.00 0.00 0.00 1.82
2223 3169 8.195165 TCTGCTGCCTAGATGTAAAATAGTAT 57.805 34.615 0.00 0.00 0.00 2.12
2224 3170 8.307483 TCTGCTGCCTAGATGTAAAATAGTATC 58.693 37.037 0.00 0.00 0.00 2.24
2278 3224 2.608268 TGCCATGCATGAAAATGAACG 58.392 42.857 28.31 8.75 31.71 3.95
2306 3252 9.890629 TTATCTTATTGTCAATCAACTACTGCT 57.109 29.630 0.07 0.00 38.97 4.24
2307 3253 7.834068 TCTTATTGTCAATCAACTACTGCTC 57.166 36.000 0.07 0.00 38.97 4.26
2308 3254 6.818644 TCTTATTGTCAATCAACTACTGCTCC 59.181 38.462 0.07 0.00 38.97 4.70
2309 3255 4.623932 TTGTCAATCAACTACTGCTCCT 57.376 40.909 0.00 0.00 0.00 3.69
2310 3256 4.193826 TGTCAATCAACTACTGCTCCTC 57.806 45.455 0.00 0.00 0.00 3.71
2311 3257 3.055819 TGTCAATCAACTACTGCTCCTCC 60.056 47.826 0.00 0.00 0.00 4.30
2312 3258 2.501723 TCAATCAACTACTGCTCCTCCC 59.498 50.000 0.00 0.00 0.00 4.30
2313 3259 1.501582 ATCAACTACTGCTCCTCCCC 58.498 55.000 0.00 0.00 0.00 4.81
2314 3260 0.617820 TCAACTACTGCTCCTCCCCC 60.618 60.000 0.00 0.00 0.00 5.40
2354 3301 2.194326 GGCTTGGGAGGGATCAGC 59.806 66.667 0.00 0.00 0.00 4.26
2480 3430 3.430497 TCTCCTCCCTCTCCCGGG 61.430 72.222 16.85 16.85 46.13 5.73
2737 3689 0.613853 CGTGGAGGAACCTGGACCTA 60.614 60.000 14.68 1.52 39.86 3.08
2742 3694 1.615424 GGAACCTGGACCTAGGGCA 60.615 63.158 18.82 1.30 42.35 5.36
2785 3737 3.680786 CGTCCTCGGCTGGTGACA 61.681 66.667 13.47 0.00 39.59 3.58
2788 3740 0.321653 GTCCTCGGCTGGTGACATTT 60.322 55.000 9.61 0.00 41.51 2.32
2792 3744 2.324330 CGGCTGGTGACATTTGCGA 61.324 57.895 0.00 0.00 41.51 5.10
2794 3746 1.237285 GGCTGGTGACATTTGCGAGT 61.237 55.000 0.00 0.00 41.51 4.18
2896 3852 2.103538 GGCTTACGATCGCGGTCA 59.896 61.111 21.02 0.00 43.17 4.02
2976 3932 0.797249 GTGACTCGTTCATCCCGACG 60.797 60.000 0.00 0.00 36.32 5.12
3173 4130 3.706373 GGAACTGCAGGCGGAGGA 61.706 66.667 19.93 0.00 34.24 3.71
3264 4223 4.148825 GTCTCGGCGGCATGGAGT 62.149 66.667 10.53 0.00 0.00 3.85
3327 4287 3.490031 ATGGTGGCGTTGTCTGGCA 62.490 57.895 0.00 0.00 39.86 4.92
3543 4504 1.429463 CTGCGAGGTCTGTTTGGTAC 58.571 55.000 0.00 0.00 0.00 3.34
3582 4543 4.166725 AGCATCCCTTCATCAACTGGATAA 59.833 41.667 0.00 0.00 34.12 1.75
3714 4675 2.764547 CCGGGGGTCCTCCTCTTC 60.765 72.222 6.13 0.00 33.94 2.87
3715 4676 2.364961 CGGGGGTCCTCCTCTTCT 59.635 66.667 6.13 0.00 33.94 2.85
3716 4677 1.619143 CGGGGGTCCTCCTCTTCTA 59.381 63.158 6.13 0.00 33.94 2.10
3717 4678 0.032416 CGGGGGTCCTCCTCTTCTAA 60.032 60.000 6.13 0.00 33.94 2.10
3718 4679 1.621622 CGGGGGTCCTCCTCTTCTAAA 60.622 57.143 6.13 0.00 33.94 1.85
3720 4681 2.506231 GGGGGTCCTCCTCTTCTAAAAG 59.494 54.545 0.00 0.00 33.94 2.27
3723 4684 4.288887 GGGGTCCTCCTCTTCTAAAAGAAA 59.711 45.833 0.00 0.00 40.95 2.52
3784 4745 0.809385 CAAGGGCAATGCAGACAGAG 59.191 55.000 7.79 0.00 0.00 3.35
3785 4746 0.403271 AAGGGCAATGCAGACAGAGT 59.597 50.000 7.79 0.00 0.00 3.24
3786 4747 0.403271 AGGGCAATGCAGACAGAGTT 59.597 50.000 7.79 0.00 0.00 3.01
3787 4748 1.202976 AGGGCAATGCAGACAGAGTTT 60.203 47.619 7.79 0.00 0.00 2.66
3788 4749 1.615392 GGGCAATGCAGACAGAGTTTT 59.385 47.619 7.79 0.00 0.00 2.43
3791 4752 3.243501 GGCAATGCAGACAGAGTTTTTCA 60.244 43.478 7.79 0.00 0.00 2.69
3792 4753 3.979495 GCAATGCAGACAGAGTTTTTCAG 59.021 43.478 0.00 0.00 0.00 3.02
3793 4754 4.543692 CAATGCAGACAGAGTTTTTCAGG 58.456 43.478 0.00 0.00 0.00 3.86
3794 4755 2.575532 TGCAGACAGAGTTTTTCAGGG 58.424 47.619 0.00 0.00 0.00 4.45
3796 4757 2.291741 GCAGACAGAGTTTTTCAGGGTG 59.708 50.000 0.00 0.00 0.00 4.61
3798 4759 2.509964 AGACAGAGTTTTTCAGGGTGGT 59.490 45.455 0.00 0.00 0.00 4.16
3834 4826 7.375280 CAGCACGAATTCTGCTTCATAAATTAG 59.625 37.037 22.06 9.38 42.54 1.73
3839 4831 9.941664 CGAATTCTGCTTCATAAATTAGTCAAT 57.058 29.630 3.52 0.00 0.00 2.57
3860 4852 8.154856 GTCAATCAGGCAGGTATAAAATACCTA 58.845 37.037 16.32 3.72 45.55 3.08
3935 4935 2.165641 CTCTACACGCCTTGTCCATGTA 59.834 50.000 0.00 0.00 39.91 2.29
3936 4936 2.563620 TCTACACGCCTTGTCCATGTAA 59.436 45.455 0.00 0.00 39.91 2.41
3958 4959 9.661563 TGTAAAACTGGATCGACATTTTACTAT 57.338 29.630 21.04 2.16 42.32 2.12
3966 4968 7.066887 TGGATCGACATTTTACTATGCAATTGT 59.933 33.333 7.40 0.00 36.06 2.71
3982 4987 4.672801 GCAATTGTACTCCTTTGCTACTGC 60.673 45.833 7.40 0.00 40.90 4.40
4010 5019 6.676237 TGAATATTACGTGCACAATGTCAT 57.324 33.333 18.64 6.47 0.00 3.06
4015 5024 1.159285 CGTGCACAATGTCATCTGGT 58.841 50.000 18.64 0.00 0.00 4.00
4026 5035 2.565391 TGTCATCTGGTAATGTGACGGT 59.435 45.455 0.00 0.00 42.86 4.83
4028 5037 2.829120 TCATCTGGTAATGTGACGGTCA 59.171 45.455 6.76 6.76 0.00 4.02
4030 5039 2.244695 TCTGGTAATGTGACGGTCAGT 58.755 47.619 11.83 0.27 0.00 3.41
4031 5040 3.423749 TCTGGTAATGTGACGGTCAGTA 58.576 45.455 11.83 4.24 0.00 2.74
4135 5153 9.991388 TCCGACAATAAAAATTCTAAAATACGG 57.009 29.630 0.00 0.00 0.00 4.02
4136 5154 8.739461 CCGACAATAAAAATTCTAAAATACGGC 58.261 33.333 0.00 0.00 0.00 5.68
4149 5167 9.444600 TTCTAAAATACGGCTTTAAATCAGTCT 57.555 29.630 0.00 0.00 0.00 3.24
4167 5185 8.807948 ATCAGTCTAATAAAGCTGCCTTTTAA 57.192 30.769 0.00 0.00 41.37 1.52
4221 5239 7.165485 TGAGTTAAGCACCAAGAAAGCTTATA 58.835 34.615 0.00 0.00 46.54 0.98
4224 5242 5.886960 AAGCACCAAGAAAGCTTATACAG 57.113 39.130 0.00 0.00 45.91 2.74
4225 5243 4.911390 AGCACCAAGAAAGCTTATACAGT 58.089 39.130 0.00 0.00 34.37 3.55
4227 5245 5.875359 AGCACCAAGAAAGCTTATACAGTAC 59.125 40.000 0.00 0.00 34.37 2.73
4228 5246 5.642063 GCACCAAGAAAGCTTATACAGTACA 59.358 40.000 0.00 0.00 31.81 2.90
4261 5293 6.126863 AGAAAAGGAATGGACACTGATACA 57.873 37.500 0.00 0.00 0.00 2.29
4262 5294 6.725364 AGAAAAGGAATGGACACTGATACAT 58.275 36.000 0.00 0.00 0.00 2.29
4263 5295 6.600822 AGAAAAGGAATGGACACTGATACATG 59.399 38.462 0.00 0.00 0.00 3.21
4264 5296 5.698741 AAGGAATGGACACTGATACATGA 57.301 39.130 0.00 0.00 0.00 3.07
4265 5297 5.698741 AGGAATGGACACTGATACATGAA 57.301 39.130 0.00 0.00 0.00 2.57
4266 5298 6.065976 AGGAATGGACACTGATACATGAAA 57.934 37.500 0.00 0.00 0.00 2.69
4267 5299 6.484288 AGGAATGGACACTGATACATGAAAA 58.516 36.000 0.00 0.00 0.00 2.29
4268 5300 6.375455 AGGAATGGACACTGATACATGAAAAC 59.625 38.462 0.00 0.00 0.00 2.43
4269 5301 6.375455 GGAATGGACACTGATACATGAAAACT 59.625 38.462 0.00 0.00 0.00 2.66
4270 5302 7.552687 GGAATGGACACTGATACATGAAAACTA 59.447 37.037 0.00 0.00 0.00 2.24
4271 5303 7.849804 ATGGACACTGATACATGAAAACTAC 57.150 36.000 0.00 0.00 0.00 2.73
4272 5304 7.004555 TGGACACTGATACATGAAAACTACT 57.995 36.000 0.00 0.00 0.00 2.57
4273 5305 8.129496 TGGACACTGATACATGAAAACTACTA 57.871 34.615 0.00 0.00 0.00 1.82
4280 5312 7.611770 TGATACATGAAAACTACTAGCACTGT 58.388 34.615 0.00 0.00 0.00 3.55
4321 5495 9.869757 GGTATTAACAAAGATGCAAAATTAGGT 57.130 29.630 0.00 0.00 0.00 3.08
4426 5608 8.900781 ACCTCTGAAATCTGAATGATTATGTTG 58.099 33.333 0.00 0.00 43.99 3.33
4956 6141 2.301870 ACCTCTGCTTAATTCGGACACA 59.698 45.455 0.00 0.00 0.00 3.72
5007 6193 1.852895 CGCTGTAATCTTGCTACGACC 59.147 52.381 0.00 0.00 0.00 4.79
5010 6196 1.820519 TGTAATCTTGCTACGACCGGT 59.179 47.619 6.92 6.92 0.00 5.28
5105 6298 0.597637 CGTGTGCGGACAAAGACTCT 60.598 55.000 12.69 0.00 32.49 3.24
5159 6352 4.188247 TCTGAACTTCTGTAATCCACGG 57.812 45.455 0.00 0.00 34.52 4.94
5163 6356 1.207329 ACTTCTGTAATCCACGGAGGC 59.793 52.381 0.00 0.00 43.50 4.70
5172 6365 1.533625 TCCACGGAGGCTTTTGAATG 58.466 50.000 0.00 0.00 37.29 2.67
5181 6374 3.308401 AGGCTTTTGAATGTGGGAGTTT 58.692 40.909 0.00 0.00 0.00 2.66
5182 6375 3.711190 AGGCTTTTGAATGTGGGAGTTTT 59.289 39.130 0.00 0.00 0.00 2.43
5183 6376 4.164030 AGGCTTTTGAATGTGGGAGTTTTT 59.836 37.500 0.00 0.00 0.00 1.94
5202 6395 4.799564 TTTTGTGATCACCAATAAGGGC 57.200 40.909 22.85 0.00 43.89 5.19
5203 6396 3.737559 TTGTGATCACCAATAAGGGCT 57.262 42.857 22.85 0.00 43.89 5.19
5204 6397 3.003394 TGTGATCACCAATAAGGGCTG 57.997 47.619 22.85 0.00 43.89 4.85
5205 6398 2.308570 TGTGATCACCAATAAGGGCTGT 59.691 45.455 22.85 0.00 43.89 4.40
5206 6399 3.245229 TGTGATCACCAATAAGGGCTGTT 60.245 43.478 22.85 0.00 43.89 3.16
5207 6400 3.763897 GTGATCACCAATAAGGGCTGTTT 59.236 43.478 15.31 0.00 43.89 2.83
5208 6401 4.220602 GTGATCACCAATAAGGGCTGTTTT 59.779 41.667 15.31 0.00 43.89 2.43
5209 6402 4.837860 TGATCACCAATAAGGGCTGTTTTT 59.162 37.500 0.00 0.00 43.89 1.94
5237 6430 9.046296 GTGATCACCAATACTCCAATAGTTTAG 57.954 37.037 15.31 0.00 39.80 1.85
5253 6446 3.653352 AGTTTAGTGGGAAAAGAGGAGCT 59.347 43.478 0.00 0.00 0.00 4.09
5306 6499 2.866762 GCGGTTAAAGATGCTCCTACAG 59.133 50.000 0.00 0.00 0.00 2.74
5315 6508 3.211288 CTCCTACAGCACTCCCCG 58.789 66.667 0.00 0.00 0.00 5.73
5321 6514 2.368875 CCTACAGCACTCCCCGATAAAT 59.631 50.000 0.00 0.00 0.00 1.40
5351 6544 6.534793 CCAAATATGGTGTTATTGAAGTTGCC 59.465 38.462 0.00 0.00 42.18 4.52
5352 6545 6.849085 AATATGGTGTTATTGAAGTTGCCA 57.151 33.333 0.00 0.00 0.00 4.92
5353 6546 4.519540 ATGGTGTTATTGAAGTTGCCAC 57.480 40.909 0.00 0.00 0.00 5.01
5354 6547 3.291584 TGGTGTTATTGAAGTTGCCACA 58.708 40.909 0.00 0.00 0.00 4.17
5355 6548 3.701542 TGGTGTTATTGAAGTTGCCACAA 59.298 39.130 0.00 0.00 0.00 3.33
5356 6549 4.343526 TGGTGTTATTGAAGTTGCCACAAT 59.656 37.500 0.00 0.00 37.82 2.71
5357 6550 5.536538 TGGTGTTATTGAAGTTGCCACAATA 59.463 36.000 0.00 0.00 36.06 1.90
5358 6551 5.861787 GGTGTTATTGAAGTTGCCACAATAC 59.138 40.000 0.00 0.00 36.61 1.89
5359 6552 6.442952 GTGTTATTGAAGTTGCCACAATACA 58.557 36.000 0.00 0.00 36.61 2.29
5360 6553 6.920758 GTGTTATTGAAGTTGCCACAATACAA 59.079 34.615 0.00 0.00 36.61 2.41
5361 6554 7.114811 GTGTTATTGAAGTTGCCACAATACAAG 59.885 37.037 0.00 0.00 36.61 3.16
5362 6555 7.013750 TGTTATTGAAGTTGCCACAATACAAGA 59.986 33.333 0.00 0.00 36.61 3.02
5363 6556 4.829064 TGAAGTTGCCACAATACAAGAC 57.171 40.909 0.00 0.00 0.00 3.01
5364 6557 4.203226 TGAAGTTGCCACAATACAAGACA 58.797 39.130 0.00 0.00 0.00 3.41
5365 6558 4.275689 TGAAGTTGCCACAATACAAGACAG 59.724 41.667 0.00 0.00 0.00 3.51
5366 6559 3.149196 AGTTGCCACAATACAAGACAGG 58.851 45.455 0.00 0.00 0.00 4.00
5367 6560 2.198827 TGCCACAATACAAGACAGGG 57.801 50.000 0.00 0.00 0.00 4.45
5368 6561 1.423541 TGCCACAATACAAGACAGGGT 59.576 47.619 0.00 0.00 0.00 4.34
5369 6562 2.640332 TGCCACAATACAAGACAGGGTA 59.360 45.455 0.00 0.00 0.00 3.69
5370 6563 3.265737 TGCCACAATACAAGACAGGGTAT 59.734 43.478 0.00 0.00 0.00 2.73
5371 6564 3.627577 GCCACAATACAAGACAGGGTATG 59.372 47.826 0.00 0.00 30.95 2.39
5372 6565 3.627577 CCACAATACAAGACAGGGTATGC 59.372 47.826 0.00 0.00 30.95 3.14
5382 6575 2.689983 GACAGGGTATGCTTTTGGATGG 59.310 50.000 0.00 0.00 0.00 3.51
5391 6584 6.429385 GGTATGCTTTTGGATGGAGATTAGAG 59.571 42.308 0.00 0.00 0.00 2.43
5449 6642 6.347725 GCATGTATCGGTTCACTCCATATTTC 60.348 42.308 0.00 0.00 0.00 2.17
5473 6666 7.553334 TCTAACTGAACTATCCATGTTGGTAC 58.447 38.462 0.00 0.00 39.03 3.34
5475 6668 4.080526 ACTGAACTATCCATGTTGGTACCC 60.081 45.833 10.07 0.00 39.03 3.69
5477 6670 4.289934 TGAACTATCCATGTTGGTACCCAA 59.710 41.667 10.07 0.78 41.69 4.12
5483 6676 5.522315 TCCATGTTGGTACCCAATAGAAA 57.478 39.130 10.07 0.00 45.80 2.52
5492 6686 2.640184 ACCCAATAGAAAGTTAGGCGC 58.360 47.619 0.00 0.00 0.00 6.53
5494 6688 2.277084 CCAATAGAAAGTTAGGCGCGT 58.723 47.619 8.43 8.08 0.00 6.01
5499 6693 1.944709 AGAAAGTTAGGCGCGTTTTGT 59.055 42.857 8.36 0.00 0.00 2.83
5501 6695 2.113910 AAGTTAGGCGCGTTTTGTTG 57.886 45.000 8.36 0.00 0.00 3.33
5515 6709 2.353030 GTTGCGCCGTTGGTGTTC 60.353 61.111 4.18 0.00 35.34 3.18
5752 6946 9.546428 AAGAAATTTGACTTTCCCAAAACATAG 57.454 29.630 0.00 0.00 37.11 2.23
5753 6947 7.657354 AGAAATTTGACTTTCCCAAAACATAGC 59.343 33.333 0.00 0.00 37.11 2.97
5767 6961 7.147567 CCCAAAACATAGCACCCCTTATATTTT 60.148 37.037 0.00 0.00 0.00 1.82
5768 6962 7.926018 CCAAAACATAGCACCCCTTATATTTTC 59.074 37.037 0.00 0.00 0.00 2.29
5774 6968 4.881850 AGCACCCCTTATATTTTCGAACTG 59.118 41.667 0.00 0.00 0.00 3.16
5777 6971 6.513393 GCACCCCTTATATTTTCGAACTGATG 60.513 42.308 0.00 0.00 0.00 3.07
5792 6986 9.443323 TTCGAACTGATGGAATATTTAGTTTGA 57.557 29.630 0.00 0.00 36.99 2.69
5794 6988 7.846107 CGAACTGATGGAATATTTAGTTTGACG 59.154 37.037 0.00 0.00 33.46 4.35
5801 6995 5.296035 GGAATATTTAGTTTGACGGGTGGAG 59.704 44.000 0.00 0.00 0.00 3.86
5810 7004 2.039418 TGACGGGTGGAGAGATAATGG 58.961 52.381 0.00 0.00 0.00 3.16
5816 7010 3.181461 GGGTGGAGAGATAATGGAGTGTG 60.181 52.174 0.00 0.00 0.00 3.82
5817 7011 3.706594 GGTGGAGAGATAATGGAGTGTGA 59.293 47.826 0.00 0.00 0.00 3.58
5822 7016 7.439655 GTGGAGAGATAATGGAGTGTGATTTAC 59.560 40.741 0.00 0.00 0.00 2.01
5825 7019 9.606631 GAGAGATAATGGAGTGTGATTTACTTT 57.393 33.333 0.00 0.00 0.00 2.66
5857 7051 1.550072 CGGTGATTTGATGGGCCTTTT 59.450 47.619 4.53 0.00 0.00 2.27
5865 7059 0.318120 GATGGGCCTTTTGTGGTGTG 59.682 55.000 4.53 0.00 0.00 3.82
5878 7072 6.567687 TTTGTGGTGTGGTTCTATGTTATG 57.432 37.500 0.00 0.00 0.00 1.90
5881 7075 4.006989 TGGTGTGGTTCTATGTTATGTGC 58.993 43.478 0.00 0.00 0.00 4.57
5885 7079 6.373216 GGTGTGGTTCTATGTTATGTGCTAAA 59.627 38.462 0.00 0.00 0.00 1.85
5886 7080 7.241376 GTGTGGTTCTATGTTATGTGCTAAAC 58.759 38.462 0.00 0.00 0.00 2.01
5887 7081 6.937465 TGTGGTTCTATGTTATGTGCTAAACA 59.063 34.615 0.00 0.00 44.79 2.83
5888 7082 7.445707 TGTGGTTCTATGTTATGTGCTAAACAA 59.554 33.333 0.00 0.00 43.61 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 0.109412 GTAGTAGGACGCGTGCAAGT 60.109 55.000 32.28 17.57 0.00 3.16
58 59 0.184933 AGAGTAGGCCGAGATGAGCT 59.815 55.000 0.00 0.00 0.00 4.09
300 327 2.765785 CTCGCGCAAAGACAGTCG 59.234 61.111 8.75 0.00 0.00 4.18
301 328 2.310233 TGCTCGCGCAAAGACAGTC 61.310 57.895 8.75 0.00 44.62 3.51
456 509 5.721232 CACTTAGTACACAGGGTTAAGAGG 58.279 45.833 1.83 0.00 0.00 3.69
490 543 4.836825 CCCGCATGAGGTATGATTAAGAT 58.163 43.478 14.88 0.00 39.21 2.40
623 713 3.306088 CCTGGCTCTCGAAAAACAGTCTA 60.306 47.826 6.23 0.00 0.00 2.59
626 716 1.884235 CCTGGCTCTCGAAAAACAGT 58.116 50.000 6.23 0.00 0.00 3.55
708 799 2.622436 GAACGGCAGATAAGAGCAACT 58.378 47.619 0.00 0.00 0.00 3.16
709 800 1.666189 GGAACGGCAGATAAGAGCAAC 59.334 52.381 0.00 0.00 0.00 4.17
710 801 1.555075 AGGAACGGCAGATAAGAGCAA 59.445 47.619 0.00 0.00 0.00 3.91
711 802 1.137086 GAGGAACGGCAGATAAGAGCA 59.863 52.381 0.00 0.00 0.00 4.26
712 803 1.539280 GGAGGAACGGCAGATAAGAGC 60.539 57.143 0.00 0.00 0.00 4.09
713 804 1.269309 CGGAGGAACGGCAGATAAGAG 60.269 57.143 0.00 0.00 0.00 2.85
714 805 0.744874 CGGAGGAACGGCAGATAAGA 59.255 55.000 0.00 0.00 0.00 2.10
715 806 0.876342 GCGGAGGAACGGCAGATAAG 60.876 60.000 0.00 0.00 42.97 1.73
716 807 1.143183 GCGGAGGAACGGCAGATAA 59.857 57.895 0.00 0.00 42.97 1.75
717 808 2.812499 GCGGAGGAACGGCAGATA 59.188 61.111 0.00 0.00 42.97 1.98
762 863 4.007644 CCGCCACCTCTGCACTGA 62.008 66.667 0.00 0.00 0.00 3.41
789 890 1.078759 CTCACGAGAACGGTGGCATC 61.079 60.000 0.00 0.00 44.46 3.91
857 958 8.678199 CCTTTTACTATTAGCTTTTCCAAGAGG 58.322 37.037 0.00 0.00 30.57 3.69
876 977 2.298411 TATGACGCGTCCCCTTTTAC 57.702 50.000 34.34 9.35 0.00 2.01
942 1044 4.157958 CTCGCAGCGCAAAGGAGC 62.158 66.667 10.87 2.34 40.48 4.70
943 1045 4.157958 GCTCGCAGCGCAAAGGAG 62.158 66.667 10.87 11.67 38.59 3.69
972 1074 2.835431 AGTGGAGGAGATCGCGGG 60.835 66.667 6.13 0.00 0.00 6.13
977 1079 1.611491 GATCGTGGAGTGGAGGAGATC 59.389 57.143 0.00 0.00 0.00 2.75
1041 1143 8.139989 GCAAAAGAATCTCATAATTGGCATACT 58.860 33.333 0.00 0.00 0.00 2.12
1053 1180 6.154021 AGCCATACAAAGCAAAAGAATCTCAT 59.846 34.615 0.00 0.00 0.00 2.90
1059 1186 5.243507 TCATCAGCCATACAAAGCAAAAGAA 59.756 36.000 0.00 0.00 0.00 2.52
1074 1201 0.032540 CGACGATGGATCATCAGCCA 59.967 55.000 8.38 0.00 40.54 4.75
1160 1293 3.405093 TATCTTGGGCCCTGCTGCG 62.405 63.158 25.70 4.77 0.00 5.18
1161 1294 1.825622 GTATCTTGGGCCCTGCTGC 60.826 63.158 25.70 7.42 0.00 5.25
1162 1295 1.524621 CGTATCTTGGGCCCTGCTG 60.525 63.158 25.70 10.39 0.00 4.41
1163 1296 2.746375 CCGTATCTTGGGCCCTGCT 61.746 63.158 25.70 10.11 0.00 4.24
1164 1297 2.203209 CCGTATCTTGGGCCCTGC 60.203 66.667 25.70 4.85 0.00 4.85
1165 1298 2.510906 CCCGTATCTTGGGCCCTG 59.489 66.667 25.70 16.24 40.47 4.45
1469 1629 1.000283 ACTCTGCGACAGAACTTCAGG 60.000 52.381 10.12 1.40 40.18 3.86
1475 1635 3.803555 CATTTCAACTCTGCGACAGAAC 58.196 45.455 10.12 0.00 40.18 3.01
1520 1680 7.986085 AAGTCTACACTATGCAATTTCAACT 57.014 32.000 0.00 0.00 30.14 3.16
1522 1682 7.040478 AGCAAAGTCTACACTATGCAATTTCAA 60.040 33.333 0.00 0.00 30.14 2.69
1675 2347 1.349357 ACCTGAAAGACTGAAGCCTCC 59.651 52.381 0.00 0.00 34.07 4.30
1680 2352 5.590259 TCCAAAAGAACCTGAAAGACTGAAG 59.410 40.000 0.00 0.00 34.07 3.02
1711 2383 9.158364 CCGATAGAAAAATGTTTATCACGATTG 57.842 33.333 0.00 0.00 39.76 2.67
1725 2430 1.210967 TCCACGCCCCGATAGAAAAAT 59.789 47.619 0.00 0.00 39.76 1.82
1791 2503 6.617371 AGATGATGTAGGATGGTCTTAGGTTT 59.383 38.462 0.00 0.00 0.00 3.27
1818 2543 7.611213 AATTCCGAAGTTATCAGTAGGTTTG 57.389 36.000 0.00 0.00 0.00 2.93
1861 2586 3.056891 CCTACATTTGTTTGGCGATGGTT 60.057 43.478 0.00 0.00 0.00 3.67
1871 2596 1.253100 CACGGCCCCTACATTTGTTT 58.747 50.000 0.00 0.00 0.00 2.83
2012 2758 5.131142 AGCTTAACAATAGCCTGTACCTCAT 59.869 40.000 0.00 0.00 39.47 2.90
2013 2759 4.469945 AGCTTAACAATAGCCTGTACCTCA 59.530 41.667 0.00 0.00 39.47 3.86
2048 2990 6.649141 TCAGCTTAACTTTGTCAACGTATCAT 59.351 34.615 0.00 0.00 0.00 2.45
2053 2995 5.527582 AGATTCAGCTTAACTTTGTCAACGT 59.472 36.000 0.00 0.00 0.00 3.99
2091 3037 6.260714 TGTGATAAGTAATTGCGAATGCTCAT 59.739 34.615 0.00 0.00 43.34 2.90
2150 3096 7.600752 GCTTTATTCTAATCGAAGAGCCATACT 59.399 37.037 0.00 0.00 43.63 2.12
2220 3166 8.193250 ACGGTCATAAGTTACAACAATGATAC 57.807 34.615 11.14 8.17 36.57 2.24
2221 3167 8.035984 TGACGGTCATAAGTTACAACAATGATA 58.964 33.333 6.76 0.00 36.57 2.15
2222 3168 6.876789 TGACGGTCATAAGTTACAACAATGAT 59.123 34.615 6.76 0.43 36.57 2.45
2223 3169 6.224584 TGACGGTCATAAGTTACAACAATGA 58.775 36.000 6.76 6.22 33.76 2.57
2224 3170 6.474819 TGACGGTCATAAGTTACAACAATG 57.525 37.500 6.76 0.00 0.00 2.82
2233 3179 4.189231 GTGCCTAATGACGGTCATAAGTT 58.811 43.478 22.91 11.40 35.76 2.66
2234 3180 3.196901 TGTGCCTAATGACGGTCATAAGT 59.803 43.478 22.91 11.04 35.76 2.24
2288 3234 4.563580 GGAGGAGCAGTAGTTGATTGACAA 60.564 45.833 0.00 0.00 36.02 3.18
2291 3237 2.501723 GGGAGGAGCAGTAGTTGATTGA 59.498 50.000 0.00 0.00 0.00 2.57
2292 3238 2.420687 GGGGAGGAGCAGTAGTTGATTG 60.421 54.545 0.00 0.00 0.00 2.67
2294 3240 1.501582 GGGGAGGAGCAGTAGTTGAT 58.498 55.000 0.00 0.00 0.00 2.57
2295 3241 0.617820 GGGGGAGGAGCAGTAGTTGA 60.618 60.000 0.00 0.00 0.00 3.18
2296 3242 0.618968 AGGGGGAGGAGCAGTAGTTG 60.619 60.000 0.00 0.00 0.00 3.16
2297 3243 0.325765 GAGGGGGAGGAGCAGTAGTT 60.326 60.000 0.00 0.00 0.00 2.24
2298 3244 1.311747 GAGGGGGAGGAGCAGTAGT 59.688 63.158 0.00 0.00 0.00 2.73
2299 3245 1.830408 CGAGGGGGAGGAGCAGTAG 60.830 68.421 0.00 0.00 0.00 2.57
2300 3246 2.279073 CGAGGGGGAGGAGCAGTA 59.721 66.667 0.00 0.00 0.00 2.74
2638 3590 4.973055 CGCCCAAACCCGTCGTCA 62.973 66.667 0.00 0.00 0.00 4.35
2781 3733 0.107643 TCCACCACTCGCAAATGTCA 59.892 50.000 0.00 0.00 0.00 3.58
2785 3737 0.327924 TCCATCCACCACTCGCAAAT 59.672 50.000 0.00 0.00 0.00 2.32
2788 3740 2.662596 GTCCATCCACCACTCGCA 59.337 61.111 0.00 0.00 0.00 5.10
2792 3744 1.874345 GACGTCGTCCATCCACCACT 61.874 60.000 14.60 0.00 0.00 4.00
2794 3746 1.183030 AAGACGTCGTCCATCCACCA 61.183 55.000 21.40 0.00 32.18 4.17
2957 3913 0.797249 CGTCGGGATGAACGAGTCAC 60.797 60.000 0.00 0.00 41.50 3.67
2993 3950 2.125512 CAAGGAGGAGAACGGCGG 60.126 66.667 13.24 0.00 0.00 6.13
3100 4057 1.069513 CCAAGAAGGGTACGACACACA 59.930 52.381 0.00 0.00 30.42 3.72
3173 4130 1.380302 GTTGCCACTGGTCCCATCT 59.620 57.895 0.00 0.00 0.00 2.90
3233 4192 3.966026 GAGACCCGCCGTTGTCGAG 62.966 68.421 0.00 0.00 39.71 4.04
3286 4245 1.520120 CGCTCGTCCATCAGCACAT 60.520 57.895 0.00 0.00 35.15 3.21
3291 4250 2.360949 ATCCTGCGCTCGTCCATCAG 62.361 60.000 9.73 0.00 0.00 2.90
3327 4287 2.202743 CGTCGACGCCACCATGAT 60.203 61.111 26.59 0.00 0.00 2.45
3450 4410 4.082523 CACCCATCAGTCCGGCGT 62.083 66.667 6.01 0.00 0.00 5.68
3517 4478 1.302033 CAGACCTCGCAGCCAAACT 60.302 57.895 0.00 0.00 0.00 2.66
3543 4504 1.709578 TGCTGATAGTCTGGGCCTAG 58.290 55.000 10.47 10.47 0.00 3.02
3582 4543 1.134965 GGCAACATCTGTCGCTACTCT 60.135 52.381 0.00 0.00 0.00 3.24
3605 4566 2.993899 CAGTAAGACTAAAGCCACCGTG 59.006 50.000 0.00 0.00 0.00 4.94
3723 4684 9.449719 ACTTCCGAAGTGATTTCAATAAACTAT 57.550 29.630 13.12 0.00 41.01 2.12
3740 4701 5.120830 CACCTTGATAACAGAACTTCCGAAG 59.879 44.000 6.59 6.59 0.00 3.79
3784 4745 1.770294 TGTCCACCACCCTGAAAAAC 58.230 50.000 0.00 0.00 0.00 2.43
3785 4746 2.315176 CATGTCCACCACCCTGAAAAA 58.685 47.619 0.00 0.00 0.00 1.94
3786 4747 1.216678 ACATGTCCACCACCCTGAAAA 59.783 47.619 0.00 0.00 0.00 2.29
3787 4748 0.850100 ACATGTCCACCACCCTGAAA 59.150 50.000 0.00 0.00 0.00 2.69
3788 4749 0.110295 CACATGTCCACCACCCTGAA 59.890 55.000 0.00 0.00 0.00 3.02
3791 4752 2.416107 CTGCACATGTCCACCACCCT 62.416 60.000 0.00 0.00 0.00 4.34
3792 4753 1.973281 CTGCACATGTCCACCACCC 60.973 63.158 0.00 0.00 0.00 4.61
3793 4754 2.629656 GCTGCACATGTCCACCACC 61.630 63.158 0.00 0.00 0.00 4.61
3794 4755 1.898094 TGCTGCACATGTCCACCAC 60.898 57.895 0.00 0.00 0.00 4.16
3796 4757 2.956987 GTGCTGCACATGTCCACC 59.043 61.111 26.70 0.00 34.08 4.61
3798 4759 0.606130 ATTCGTGCTGCACATGTCCA 60.606 50.000 29.86 8.93 36.60 4.02
3811 4802 8.390354 TGACTAATTTATGAAGCAGAATTCGTG 58.610 33.333 0.00 0.45 31.06 4.35
3834 4826 6.998673 AGGTATTTTATACCTGCCTGATTGAC 59.001 38.462 15.71 0.00 45.56 3.18
3839 4831 7.924358 TTCTAGGTATTTTATACCTGCCTGA 57.076 36.000 22.63 14.32 46.60 3.86
3872 4864 5.077564 TCCGCACCTAGTATGAAGTCATAT 58.922 41.667 4.39 0.00 40.53 1.78
3873 4865 4.466827 TCCGCACCTAGTATGAAGTCATA 58.533 43.478 0.00 0.00 37.76 2.15
3913 4913 0.108138 ATGGACAAGGCGTGTAGAGC 60.108 55.000 5.94 0.00 41.96 4.09
3935 4935 7.120579 TGCATAGTAAAATGTCGATCCAGTTTT 59.879 33.333 6.75 4.72 34.75 2.43
3936 4936 6.597672 TGCATAGTAAAATGTCGATCCAGTTT 59.402 34.615 6.67 6.67 36.65 2.66
3966 4968 4.009675 CAAATGGCAGTAGCAAAGGAGTA 58.990 43.478 0.00 0.00 44.61 2.59
3982 4987 6.751425 ACATTGTGCACGTAATATTCAAATGG 59.249 34.615 13.13 0.99 0.00 3.16
4010 5019 2.244695 ACTGACCGTCACATTACCAGA 58.755 47.619 0.00 0.00 0.00 3.86
4015 5024 5.858049 CGTTACTTTACTGACCGTCACATTA 59.142 40.000 0.00 0.00 0.00 1.90
4026 5035 3.738830 AGCACACCGTTACTTTACTGA 57.261 42.857 0.00 0.00 0.00 3.41
4028 5037 4.522022 AGTCTAGCACACCGTTACTTTACT 59.478 41.667 0.00 0.00 0.00 2.24
4030 5039 5.221303 ACAAGTCTAGCACACCGTTACTTTA 60.221 40.000 0.00 0.00 0.00 1.85
4031 5040 4.056050 CAAGTCTAGCACACCGTTACTTT 58.944 43.478 0.00 0.00 0.00 2.66
4131 5149 8.823818 GCTTTATTAGACTGATTTAAAGCCGTA 58.176 33.333 12.98 0.00 44.36 4.02
4136 5154 8.897752 AGGCAGCTTTATTAGACTGATTTAAAG 58.102 33.333 0.00 0.00 34.51 1.85
4139 5157 8.807948 AAAGGCAGCTTTATTAGACTGATTTA 57.192 30.769 0.00 0.00 32.88 1.40
4140 5158 7.709149 AAAGGCAGCTTTATTAGACTGATTT 57.291 32.000 0.00 0.00 32.88 2.17
4142 5160 8.678199 GTTAAAAGGCAGCTTTATTAGACTGAT 58.322 33.333 0.00 0.00 32.88 2.90
4144 5162 8.045176 AGTTAAAAGGCAGCTTTATTAGACTG 57.955 34.615 0.00 0.00 33.70 3.51
4160 5178 5.041951 TGTCGCAGCATTTAGTTAAAAGG 57.958 39.130 0.00 0.00 32.00 3.11
4167 5185 3.853307 GCAAAACTGTCGCAGCATTTAGT 60.853 43.478 6.74 0.00 34.37 2.24
4235 5267 8.988060 TGTATCAGTGTCCATTCCTTTTCTATA 58.012 33.333 0.00 0.00 0.00 1.31
4236 5268 7.861629 TGTATCAGTGTCCATTCCTTTTCTAT 58.138 34.615 0.00 0.00 0.00 1.98
4238 5270 6.126863 TGTATCAGTGTCCATTCCTTTTCT 57.873 37.500 0.00 0.00 0.00 2.52
4239 5271 6.599244 TCATGTATCAGTGTCCATTCCTTTTC 59.401 38.462 0.00 0.00 0.00 2.29
4249 5281 7.222999 GCTAGTAGTTTTCATGTATCAGTGTCC 59.777 40.741 0.00 0.00 0.00 4.02
4261 5293 9.938280 TTATGTAACAGTGCTAGTAGTTTTCAT 57.062 29.630 0.00 1.43 0.00 2.57
4262 5294 9.938280 ATTATGTAACAGTGCTAGTAGTTTTCA 57.062 29.630 0.00 0.00 0.00 2.69
4270 5302 8.730680 CCAAAGAAATTATGTAACAGTGCTAGT 58.269 33.333 0.00 0.00 0.00 2.57
4271 5303 8.730680 ACCAAAGAAATTATGTAACAGTGCTAG 58.269 33.333 0.00 0.00 0.00 3.42
4272 5304 8.630054 ACCAAAGAAATTATGTAACAGTGCTA 57.370 30.769 0.00 0.00 0.00 3.49
4273 5305 7.524717 ACCAAAGAAATTATGTAACAGTGCT 57.475 32.000 0.00 0.00 0.00 4.40
4375 5557 3.392882 CTTTCCTTTGGTTGGATGCAAC 58.607 45.455 20.76 20.76 33.09 4.17
4386 5568 2.639839 TCAGAGGTCTCCTTTCCTTTGG 59.360 50.000 0.00 0.00 36.83 3.28
4389 5571 4.849235 AGATTTCAGAGGTCTCCTTTCCTT 59.151 41.667 0.00 0.00 31.76 3.36
4392 5574 5.413309 TCAGATTTCAGAGGTCTCCTTTC 57.587 43.478 0.00 0.00 31.76 2.62
4426 5608 3.050275 GGAGCAGCACACGGGAAC 61.050 66.667 0.00 0.00 0.00 3.62
4455 5637 3.107661 CGTACCGCACGTTGTCCC 61.108 66.667 0.00 0.00 45.82 4.46
4735 5917 2.500442 GCTGTGCGAGACGATCACG 61.500 63.158 0.00 0.00 45.75 4.35
4956 6141 2.472695 TGAAGCAAGATTACAGCGGT 57.527 45.000 0.00 0.00 0.00 5.68
5031 6217 2.407428 TACAGCAGCTCGTCTCCCG 61.407 63.158 0.00 0.00 38.13 5.14
5045 6231 3.525864 CGTACATTTACGCACGTACAG 57.474 47.619 1.73 0.00 44.38 2.74
5065 6251 2.481104 GCACTCCTGTCTGCTACATCTC 60.481 54.545 0.00 0.00 37.50 2.75
5066 6252 1.480137 GCACTCCTGTCTGCTACATCT 59.520 52.381 0.00 0.00 37.50 2.90
5067 6253 1.800655 CGCACTCCTGTCTGCTACATC 60.801 57.143 0.00 0.00 37.50 3.06
5068 6254 0.174389 CGCACTCCTGTCTGCTACAT 59.826 55.000 0.00 0.00 37.50 2.29
5069 6255 1.179174 ACGCACTCCTGTCTGCTACA 61.179 55.000 0.00 0.00 36.42 2.74
5093 6286 6.749923 AGATTATTGCAAGAGTCTTTGTCC 57.250 37.500 12.77 0.00 0.00 4.02
5105 6298 9.029243 CAACGGCATTAATAAAGATTATTGCAA 57.971 29.630 18.72 0.00 46.88 4.08
5159 6352 2.519013 ACTCCCACATTCAAAAGCCTC 58.481 47.619 0.00 0.00 0.00 4.70
5181 6374 4.220382 CAGCCCTTATTGGTGATCACAAAA 59.780 41.667 26.47 19.53 33.12 2.44
5182 6375 3.763360 CAGCCCTTATTGGTGATCACAAA 59.237 43.478 26.47 22.35 33.12 2.83
5183 6376 3.245229 ACAGCCCTTATTGGTGATCACAA 60.245 43.478 26.47 14.09 35.30 3.33
5184 6377 2.308570 ACAGCCCTTATTGGTGATCACA 59.691 45.455 26.47 8.28 35.30 3.58
5185 6378 3.004752 ACAGCCCTTATTGGTGATCAC 57.995 47.619 17.91 17.91 35.30 3.06
5186 6379 3.737559 AACAGCCCTTATTGGTGATCA 57.262 42.857 0.00 0.00 35.30 2.92
5187 6380 5.405935 AAAAACAGCCCTTATTGGTGATC 57.594 39.130 0.00 0.00 35.30 2.92
5206 6399 6.968263 TTGGAGTATTGGTGATCACAAAAA 57.032 33.333 26.47 17.19 0.00 1.94
5207 6400 7.888021 ACTATTGGAGTATTGGTGATCACAAAA 59.112 33.333 26.47 19.53 36.27 2.44
5208 6401 7.402054 ACTATTGGAGTATTGGTGATCACAAA 58.598 34.615 26.47 22.35 36.27 2.83
5209 6402 6.957631 ACTATTGGAGTATTGGTGATCACAA 58.042 36.000 26.47 14.09 36.27 3.33
5210 6403 6.560003 ACTATTGGAGTATTGGTGATCACA 57.440 37.500 26.47 8.28 36.27 3.58
5211 6404 7.865706 AAACTATTGGAGTATTGGTGATCAC 57.134 36.000 17.91 17.91 37.44 3.06
5212 6405 8.768397 ACTAAACTATTGGAGTATTGGTGATCA 58.232 33.333 0.00 0.00 37.44 2.92
5213 6406 9.046296 CACTAAACTATTGGAGTATTGGTGATC 57.954 37.037 0.00 0.00 38.46 2.92
5214 6407 7.993183 CCACTAAACTATTGGAGTATTGGTGAT 59.007 37.037 12.82 0.00 38.46 3.06
5215 6408 7.335627 CCACTAAACTATTGGAGTATTGGTGA 58.664 38.462 12.82 0.00 38.46 4.02
5216 6409 6.542370 CCCACTAAACTATTGGAGTATTGGTG 59.458 42.308 0.00 0.00 37.44 4.17
5217 6410 6.445786 TCCCACTAAACTATTGGAGTATTGGT 59.554 38.462 0.00 0.00 37.44 3.67
5218 6411 6.895782 TCCCACTAAACTATTGGAGTATTGG 58.104 40.000 0.00 0.00 37.44 3.16
5219 6412 8.801882 TTTCCCACTAAACTATTGGAGTATTG 57.198 34.615 0.00 0.00 37.44 1.90
5220 6413 9.462606 CTTTTCCCACTAAACTATTGGAGTATT 57.537 33.333 0.00 0.00 37.44 1.89
5221 6414 8.832735 TCTTTTCCCACTAAACTATTGGAGTAT 58.167 33.333 0.00 0.00 37.44 2.12
5222 6415 8.209802 TCTTTTCCCACTAAACTATTGGAGTA 57.790 34.615 0.00 0.00 37.44 2.59
5223 6416 7.086685 TCTTTTCCCACTAAACTATTGGAGT 57.913 36.000 0.00 0.00 41.56 3.85
5224 6417 6.599638 CCTCTTTTCCCACTAAACTATTGGAG 59.400 42.308 0.00 0.00 30.62 3.86
5225 6418 6.273730 TCCTCTTTTCCCACTAAACTATTGGA 59.726 38.462 0.00 0.00 30.62 3.53
5237 6430 1.882623 CAACAGCTCCTCTTTTCCCAC 59.117 52.381 0.00 0.00 0.00 4.61
5253 6446 5.842328 TCCTCCTAGTAAAAGAACTCCAACA 59.158 40.000 0.00 0.00 0.00 3.33
5321 6514 7.392113 ACTTCAATAACACCATATTTGGAACGA 59.608 33.333 9.40 0.00 46.92 3.85
5351 6544 4.517285 AGCATACCCTGTCTTGTATTGTG 58.483 43.478 0.00 0.00 0.00 3.33
5352 6545 4.844349 AGCATACCCTGTCTTGTATTGT 57.156 40.909 0.00 0.00 0.00 2.71
5353 6546 6.324819 CAAAAGCATACCCTGTCTTGTATTG 58.675 40.000 0.00 0.00 0.00 1.90
5354 6547 5.418840 CCAAAAGCATACCCTGTCTTGTATT 59.581 40.000 0.00 0.00 0.00 1.89
5355 6548 4.949856 CCAAAAGCATACCCTGTCTTGTAT 59.050 41.667 0.00 0.00 0.00 2.29
5356 6549 4.042311 TCCAAAAGCATACCCTGTCTTGTA 59.958 41.667 0.00 0.00 0.00 2.41
5357 6550 3.157087 CCAAAAGCATACCCTGTCTTGT 58.843 45.455 0.00 0.00 0.00 3.16
5358 6551 3.420893 TCCAAAAGCATACCCTGTCTTG 58.579 45.455 0.00 0.00 0.00 3.02
5359 6552 3.806949 TCCAAAAGCATACCCTGTCTT 57.193 42.857 0.00 0.00 0.00 3.01
5360 6553 3.624777 CATCCAAAAGCATACCCTGTCT 58.375 45.455 0.00 0.00 0.00 3.41
5361 6554 2.689983 CCATCCAAAAGCATACCCTGTC 59.310 50.000 0.00 0.00 0.00 3.51
5362 6555 2.311542 TCCATCCAAAAGCATACCCTGT 59.688 45.455 0.00 0.00 0.00 4.00
5363 6556 2.954318 CTCCATCCAAAAGCATACCCTG 59.046 50.000 0.00 0.00 0.00 4.45
5364 6557 2.852449 TCTCCATCCAAAAGCATACCCT 59.148 45.455 0.00 0.00 0.00 4.34
5365 6558 3.297134 TCTCCATCCAAAAGCATACCC 57.703 47.619 0.00 0.00 0.00 3.69
5366 6559 6.299141 TCTAATCTCCATCCAAAAGCATACC 58.701 40.000 0.00 0.00 0.00 2.73
5367 6560 6.995091 ACTCTAATCTCCATCCAAAAGCATAC 59.005 38.462 0.00 0.00 0.00 2.39
5368 6561 7.141758 ACTCTAATCTCCATCCAAAAGCATA 57.858 36.000 0.00 0.00 0.00 3.14
5369 6562 6.011122 ACTCTAATCTCCATCCAAAAGCAT 57.989 37.500 0.00 0.00 0.00 3.79
5370 6563 5.441718 ACTCTAATCTCCATCCAAAAGCA 57.558 39.130 0.00 0.00 0.00 3.91
5371 6564 6.765915 AAACTCTAATCTCCATCCAAAAGC 57.234 37.500 0.00 0.00 0.00 3.51
5372 6565 7.283354 GGGTAAACTCTAATCTCCATCCAAAAG 59.717 40.741 0.00 0.00 0.00 2.27
5416 6609 6.728200 AGTGAACCGATACATGCAATATTTG 58.272 36.000 0.00 0.00 0.00 2.32
5418 6611 5.470098 GGAGTGAACCGATACATGCAATATT 59.530 40.000 0.00 0.00 0.00 1.28
5420 6613 4.141824 TGGAGTGAACCGATACATGCAATA 60.142 41.667 0.00 0.00 0.00 1.90
5427 6620 6.479972 AGAAATATGGAGTGAACCGATACA 57.520 37.500 0.00 0.00 0.00 2.29
5449 6642 6.761714 GGTACCAACATGGATAGTTCAGTTAG 59.238 42.308 7.15 0.00 40.96 2.34
5473 6666 1.597663 CGCGCCTAACTTTCTATTGGG 59.402 52.381 0.00 0.00 0.00 4.12
5475 6668 4.336532 AAACGCGCCTAACTTTCTATTG 57.663 40.909 5.73 0.00 0.00 1.90
5477 6670 3.749609 ACAAAACGCGCCTAACTTTCTAT 59.250 39.130 5.73 0.00 0.00 1.98
5483 6676 0.317519 GCAACAAAACGCGCCTAACT 60.318 50.000 5.73 0.00 0.00 2.24
5492 6686 2.572448 CCAACGGCGCAACAAAACG 61.572 57.895 10.83 3.69 0.00 3.60
5494 6688 1.517257 CACCAACGGCGCAACAAAA 60.517 52.632 10.83 0.00 0.00 2.44
5499 6693 0.814410 TAAGAACACCAACGGCGCAA 60.814 50.000 10.83 0.00 0.00 4.85
5501 6695 1.495951 CTAAGAACACCAACGGCGC 59.504 57.895 6.90 0.00 0.00 6.53
5503 6697 1.534163 GAACCTAAGAACACCAACGGC 59.466 52.381 0.00 0.00 0.00 5.68
5504 6698 3.121738 AGAACCTAAGAACACCAACGG 57.878 47.619 0.00 0.00 0.00 4.44
5574 6768 7.987750 AACTTAAAAGGTTTGGCTTTCAAAA 57.012 28.000 0.00 0.00 45.74 2.44
5576 6770 7.371126 CAAACTTAAAAGGTTTGGCTTTCAA 57.629 32.000 9.74 0.00 45.43 2.69
5577 6771 6.976636 CAAACTTAAAAGGTTTGGCTTTCA 57.023 33.333 9.74 0.00 45.43 2.69
5624 6818 9.661563 ATGACGAAACTAATAGTACCAATTTGA 57.338 29.630 0.00 0.00 0.00 2.69
5743 6937 7.647715 CGAAAATATAAGGGGTGCTATGTTTTG 59.352 37.037 0.00 0.00 32.37 2.44
5745 6939 7.057894 TCGAAAATATAAGGGGTGCTATGTTT 58.942 34.615 0.00 0.00 0.00 2.83
5752 6946 4.879545 TCAGTTCGAAAATATAAGGGGTGC 59.120 41.667 0.00 0.00 0.00 5.01
5753 6947 6.017109 CCATCAGTTCGAAAATATAAGGGGTG 60.017 42.308 0.00 0.00 0.00 4.61
5767 6961 8.879759 GTCAAACTAAATATTCCATCAGTTCGA 58.120 33.333 0.00 0.00 0.00 3.71
5768 6962 7.846107 CGTCAAACTAAATATTCCATCAGTTCG 59.154 37.037 0.00 0.00 0.00 3.95
5774 6968 6.238648 CCACCCGTCAAACTAAATATTCCATC 60.239 42.308 0.00 0.00 0.00 3.51
5777 6971 5.187687 TCCACCCGTCAAACTAAATATTCC 58.812 41.667 0.00 0.00 0.00 3.01
5792 6986 2.320781 CTCCATTATCTCTCCACCCGT 58.679 52.381 0.00 0.00 0.00 5.28
5794 6988 3.041946 ACACTCCATTATCTCTCCACCC 58.958 50.000 0.00 0.00 0.00 4.61
5825 7019 8.303156 CCCATCAAATCACCGCATTATAAATAA 58.697 33.333 0.00 0.00 0.00 1.40
5834 7028 1.394266 GGCCCATCAAATCACCGCAT 61.394 55.000 0.00 0.00 0.00 4.73
5857 7051 5.000591 CACATAACATAGAACCACACCACA 58.999 41.667 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.