Multiple sequence alignment - TraesCS7D01G419600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G419600 chr7D 100.000 3989 0 0 1 3989 538897609 538893621 0.000000e+00 7367.0
1 TraesCS7D01G419600 chr7D 87.165 709 70 6 3280 3986 585426837 585427526 0.000000e+00 785.0
2 TraesCS7D01G419600 chr7D 75.574 479 86 23 2298 2765 538818445 538817987 1.450000e-49 207.0
3 TraesCS7D01G419600 chr7D 83.556 225 29 6 3275 3497 454094707 454094925 1.880000e-48 204.0
4 TraesCS7D01G419600 chr7D 75.105 474 95 20 2298 2758 538140456 538139993 2.430000e-47 200.0
5 TraesCS7D01G419600 chr7D 80.625 160 29 2 2591 2749 433724664 433724822 5.410000e-24 122.0
6 TraesCS7D01G419600 chr7B 92.246 1380 59 21 1864 3217 581396128 581394771 0.000000e+00 1912.0
7 TraesCS7D01G419600 chr7B 86.835 1466 94 38 344 1765 581397720 581396310 0.000000e+00 1546.0
8 TraesCS7D01G419600 chr7B 75.676 481 89 25 2298 2765 581373865 581373400 8.680000e-52 215.0
9 TraesCS7D01G419600 chr7B 80.625 160 29 2 2591 2749 451148349 451148507 5.410000e-24 122.0
10 TraesCS7D01G419600 chr7B 96.154 52 2 0 1827 1878 581396200 581396149 7.100000e-13 86.1
11 TraesCS7D01G419600 chr7A 88.143 1341 74 39 1829 3101 620412961 620411638 0.000000e+00 1517.0
12 TraesCS7D01G419600 chr7A 86.344 1406 86 33 400 1765 620414417 620413078 0.000000e+00 1435.0
13 TraesCS7D01G419600 chr7A 80.591 711 99 16 3278 3985 573131323 573131997 2.750000e-141 512.0
14 TraesCS7D01G419600 chr7A 75.314 478 89 22 2298 2765 620487468 620487926 6.760000e-48 202.0
15 TraesCS7D01G419600 chr7A 75.052 481 91 23 2298 2765 620370835 620370371 3.140000e-46 196.0
16 TraesCS7D01G419600 chr7A 81.250 160 28 2 2591 2749 484395952 484396110 1.160000e-25 128.0
17 TraesCS7D01G419600 chr7A 92.857 84 6 0 319 402 620414812 620414729 5.410000e-24 122.0
18 TraesCS7D01G419600 chr6A 86.255 713 77 9 3280 3989 125881732 125881038 0.000000e+00 754.0
19 TraesCS7D01G419600 chr4B 86.305 701 77 8 3287 3986 401885815 401886497 0.000000e+00 745.0
20 TraesCS7D01G419600 chr4B 88.958 480 52 1 3510 3989 581843213 581842735 3.430000e-165 592.0
21 TraesCS7D01G419600 chr6D 85.431 707 81 11 3282 3985 328617707 328617020 0.000000e+00 715.0
22 TraesCS7D01G419600 chr6D 85.331 709 78 15 3282 3985 146943759 146943072 0.000000e+00 710.0
23 TraesCS7D01G419600 chr3D 85.190 709 69 11 3279 3985 360872440 360873114 0.000000e+00 695.0
24 TraesCS7D01G419600 chr3D 84.332 651 77 14 3280 3924 551001626 551002257 7.330000e-172 614.0
25 TraesCS7D01G419600 chr6B 84.507 710 83 12 3279 3986 702278012 702278696 0.000000e+00 676.0
26 TraesCS7D01G419600 chr6B 86.515 482 51 8 3512 3981 651406353 651405874 5.910000e-143 518.0
27 TraesCS7D01G419600 chr6B 86.957 161 21 0 2299 2459 642724535 642724695 8.810000e-42 182.0
28 TraesCS7D01G419600 chr1D 84.158 707 90 10 3282 3986 58563872 58564558 0.000000e+00 665.0
29 TraesCS7D01G419600 chr1D 83.569 706 80 10 3282 3986 163409637 163410307 2.620000e-176 628.0
30 TraesCS7D01G419600 chr2A 84.085 710 83 12 3282 3986 372762001 372762685 0.000000e+00 658.0
31 TraesCS7D01G419600 chr2A 80.571 175 24 8 2582 2751 686797866 686798035 4.180000e-25 126.0
32 TraesCS7D01G419600 chr1A 83.613 714 90 18 3280 3985 21496770 21496076 0.000000e+00 645.0
33 TraesCS7D01G419600 chr1A 80.423 189 33 4 2290 2476 562042754 562042940 1.490000e-29 141.0
34 TraesCS7D01G419600 chr1A 84.404 109 9 5 149 253 419484260 419484156 2.540000e-17 100.0
35 TraesCS7D01G419600 chr1A 82.883 111 13 5 153 258 430237951 430238060 1.180000e-15 95.3
36 TraesCS7D01G419600 chr1A 79.845 129 21 4 153 278 430237642 430237516 5.490000e-14 89.8
37 TraesCS7D01G419600 chr5D 91.379 464 38 2 3528 3989 6527468 6527005 5.620000e-178 634.0
38 TraesCS7D01G419600 chr3B 82.438 484 67 13 3512 3984 559101330 559100854 1.330000e-109 407.0
39 TraesCS7D01G419600 chr4D 83.673 392 45 6 3282 3672 319685231 319684858 6.340000e-93 351.0
40 TraesCS7D01G419600 chr2B 94.595 222 9 3 1156 1377 391481484 391481702 1.370000e-89 340.0
41 TraesCS7D01G419600 chr2B 91.892 222 15 2 1156 1377 633601923 633602141 1.390000e-79 307.0
42 TraesCS7D01G419600 chr2B 75.158 475 80 32 2299 2751 649670209 649670667 5.260000e-44 189.0
43 TraesCS7D01G419600 chr2B 80.269 223 15 10 906 1127 633601736 633601930 1.490000e-29 141.0
44 TraesCS7D01G419600 chr2B 78.125 224 19 13 906 1127 391481296 391481491 9.060000e-22 115.0
45 TraesCS7D01G419600 chr2B 85.321 109 11 4 153 258 762359257 762359151 1.520000e-19 108.0
46 TraesCS7D01G419600 chr2B 83.486 109 10 7 153 259 763523245 763523347 1.180000e-15 95.3
47 TraesCS7D01G419600 chr5B 97.576 165 4 0 1156 1320 120538828 120538664 2.350000e-72 283.0
48 TraesCS7D01G419600 chr5B 89.083 229 15 6 1156 1377 246493066 246492841 3.930000e-70 276.0
49 TraesCS7D01G419600 chr5B 81.034 232 15 7 906 1136 246493253 246493050 1.480000e-34 158.0
50 TraesCS7D01G419600 chr5B 81.057 227 13 8 906 1130 120539016 120538818 1.920000e-33 154.0
51 TraesCS7D01G419600 chr5B 83.784 111 9 6 153 258 448286196 448286302 3.280000e-16 97.1
52 TraesCS7D01G419600 chr2D 74.153 472 90 27 2299 2751 544259893 544260351 2.470000e-37 167.0
53 TraesCS7D01G419600 chr2D 77.931 290 42 14 3 278 563298825 563299106 1.150000e-35 161.0
54 TraesCS7D01G419600 chr5A 76.341 317 33 18 1 279 708357169 708356857 9.000000e-27 132.0
55 TraesCS7D01G419600 chr1B 82.677 127 19 2 154 278 593225357 593225232 4.210000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G419600 chr7D 538893621 538897609 3988 True 7367.000000 7367 100.000000 1 3989 1 chr7D.!!$R3 3988
1 TraesCS7D01G419600 chr7D 585426837 585427526 689 False 785.000000 785 87.165000 3280 3986 1 chr7D.!!$F3 706
2 TraesCS7D01G419600 chr7B 581394771 581397720 2949 True 1181.366667 1912 91.745000 344 3217 3 chr7B.!!$R2 2873
3 TraesCS7D01G419600 chr7A 620411638 620414812 3174 True 1024.666667 1517 89.114667 319 3101 3 chr7A.!!$R2 2782
4 TraesCS7D01G419600 chr7A 573131323 573131997 674 False 512.000000 512 80.591000 3278 3985 1 chr7A.!!$F2 707
5 TraesCS7D01G419600 chr6A 125881038 125881732 694 True 754.000000 754 86.255000 3280 3989 1 chr6A.!!$R1 709
6 TraesCS7D01G419600 chr4B 401885815 401886497 682 False 745.000000 745 86.305000 3287 3986 1 chr4B.!!$F1 699
7 TraesCS7D01G419600 chr6D 328617020 328617707 687 True 715.000000 715 85.431000 3282 3985 1 chr6D.!!$R2 703
8 TraesCS7D01G419600 chr6D 146943072 146943759 687 True 710.000000 710 85.331000 3282 3985 1 chr6D.!!$R1 703
9 TraesCS7D01G419600 chr3D 360872440 360873114 674 False 695.000000 695 85.190000 3279 3985 1 chr3D.!!$F1 706
10 TraesCS7D01G419600 chr3D 551001626 551002257 631 False 614.000000 614 84.332000 3280 3924 1 chr3D.!!$F2 644
11 TraesCS7D01G419600 chr6B 702278012 702278696 684 False 676.000000 676 84.507000 3279 3986 1 chr6B.!!$F2 707
12 TraesCS7D01G419600 chr1D 58563872 58564558 686 False 665.000000 665 84.158000 3282 3986 1 chr1D.!!$F1 704
13 TraesCS7D01G419600 chr1D 163409637 163410307 670 False 628.000000 628 83.569000 3282 3986 1 chr1D.!!$F2 704
14 TraesCS7D01G419600 chr2A 372762001 372762685 684 False 658.000000 658 84.085000 3282 3986 1 chr2A.!!$F1 704
15 TraesCS7D01G419600 chr1A 21496076 21496770 694 True 645.000000 645 83.613000 3280 3985 1 chr1A.!!$R1 705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
492 807 0.100503 GCATTCAAATCCCCGAACCG 59.899 55.0 0.00 0.0 0.00 4.44 F
1396 1717 0.036448 TGCCCATTTCGTTAACCGGA 59.964 50.0 9.46 0.0 37.11 5.14 F
1567 1895 0.250234 TCCCCTGCATTTGTCTCTCG 59.750 55.0 0.00 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2444 2945 0.032515 TGAGCGGGTTCCAGAGGATA 60.033 55.0 0.00 0.00 0.00 2.59 R
2475 2976 0.107459 GTGCTGTGGAGAAGGGATCC 60.107 60.0 1.92 1.92 37.35 3.36 R
3266 3784 0.109226 GCTCTTACGGACTGAAGCGT 60.109 55.0 0.00 0.00 0.00 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 8.994429 TTTTAAGAACTTGCAAACTTTCATGA 57.006 26.923 14.99 0.00 0.00 3.07
68 69 7.985634 TTAAGAACTTGCAAACTTTCATGAC 57.014 32.000 14.99 0.00 0.00 3.06
69 70 5.581126 AGAACTTGCAAACTTTCATGACA 57.419 34.783 14.35 0.00 0.00 3.58
70 71 6.152932 AGAACTTGCAAACTTTCATGACAT 57.847 33.333 14.35 0.00 0.00 3.06
71 72 6.211515 AGAACTTGCAAACTTTCATGACATC 58.788 36.000 14.35 0.00 0.00 3.06
72 73 5.518848 ACTTGCAAACTTTCATGACATCA 57.481 34.783 0.00 0.00 0.00 3.07
73 74 5.284079 ACTTGCAAACTTTCATGACATCAC 58.716 37.500 0.00 0.00 0.00 3.06
74 75 4.915158 TGCAAACTTTCATGACATCACA 57.085 36.364 0.00 0.00 0.00 3.58
75 76 5.456548 TGCAAACTTTCATGACATCACAT 57.543 34.783 0.00 0.00 0.00 3.21
76 77 5.845103 TGCAAACTTTCATGACATCACATT 58.155 33.333 0.00 0.00 0.00 2.71
77 78 6.282167 TGCAAACTTTCATGACATCACATTT 58.718 32.000 0.00 0.00 0.00 2.32
78 79 6.201234 TGCAAACTTTCATGACATCACATTTG 59.799 34.615 0.00 1.63 0.00 2.32
79 80 6.201425 GCAAACTTTCATGACATCACATTTGT 59.799 34.615 0.00 0.00 0.00 2.83
80 81 7.560700 CAAACTTTCATGACATCACATTTGTG 58.439 34.615 4.29 4.29 46.91 3.33
128 129 7.854534 ACAATGAAAATGCTACTTTTGAAAGC 58.145 30.769 3.48 0.00 39.63 3.51
137 138 7.232945 TGCTACTTTTGAAAGCATTGTTTTC 57.767 32.000 16.39 16.39 41.15 2.29
138 139 6.257630 TGCTACTTTTGAAAGCATTGTTTTCC 59.742 34.615 19.30 5.86 41.15 3.13
139 140 6.292865 GCTACTTTTGAAAGCATTGTTTTCCC 60.293 38.462 19.30 1.70 39.63 3.97
140 141 5.495640 ACTTTTGAAAGCATTGTTTTCCCA 58.504 33.333 19.30 7.06 39.63 4.37
141 142 5.353956 ACTTTTGAAAGCATTGTTTTCCCAC 59.646 36.000 19.30 0.78 39.63 4.61
142 143 3.090952 TGAAAGCATTGTTTTCCCACG 57.909 42.857 19.30 0.00 34.43 4.94
143 144 2.690497 TGAAAGCATTGTTTTCCCACGA 59.310 40.909 19.30 2.21 34.43 4.35
144 145 2.793278 AAGCATTGTTTTCCCACGAC 57.207 45.000 0.00 0.00 0.00 4.34
145 146 1.981256 AGCATTGTTTTCCCACGACT 58.019 45.000 0.00 0.00 0.00 4.18
146 147 2.306847 AGCATTGTTTTCCCACGACTT 58.693 42.857 0.00 0.00 0.00 3.01
147 148 3.482436 AGCATTGTTTTCCCACGACTTA 58.518 40.909 0.00 0.00 0.00 2.24
148 149 3.252458 AGCATTGTTTTCCCACGACTTAC 59.748 43.478 0.00 0.00 0.00 2.34
149 150 3.252458 GCATTGTTTTCCCACGACTTACT 59.748 43.478 0.00 0.00 0.00 2.24
150 151 4.261447 GCATTGTTTTCCCACGACTTACTT 60.261 41.667 0.00 0.00 0.00 2.24
151 152 5.049267 GCATTGTTTTCCCACGACTTACTTA 60.049 40.000 0.00 0.00 0.00 2.24
152 153 6.513720 GCATTGTTTTCCCACGACTTACTTAA 60.514 38.462 0.00 0.00 0.00 1.85
153 154 7.590279 CATTGTTTTCCCACGACTTACTTAAT 58.410 34.615 0.00 0.00 0.00 1.40
154 155 6.548441 TGTTTTCCCACGACTTACTTAATG 57.452 37.500 0.00 0.00 0.00 1.90
155 156 6.289834 TGTTTTCCCACGACTTACTTAATGA 58.710 36.000 0.00 0.00 0.00 2.57
156 157 6.766944 TGTTTTCCCACGACTTACTTAATGAA 59.233 34.615 0.00 0.00 0.00 2.57
157 158 7.282675 TGTTTTCCCACGACTTACTTAATGAAA 59.717 33.333 0.00 0.00 0.00 2.69
158 159 7.989416 TTTCCCACGACTTACTTAATGAAAT 57.011 32.000 0.00 0.00 0.00 2.17
159 160 7.989416 TTCCCACGACTTACTTAATGAAATT 57.011 32.000 0.00 0.00 41.28 1.82
160 161 7.989416 TCCCACGACTTACTTAATGAAATTT 57.011 32.000 0.00 0.00 37.87 1.82
161 162 8.398878 TCCCACGACTTACTTAATGAAATTTT 57.601 30.769 0.00 0.00 37.87 1.82
162 163 8.293867 TCCCACGACTTACTTAATGAAATTTTG 58.706 33.333 0.00 0.00 37.87 2.44
163 164 7.061789 CCCACGACTTACTTAATGAAATTTTGC 59.938 37.037 0.00 0.00 37.87 3.68
164 165 7.593273 CCACGACTTACTTAATGAAATTTTGCA 59.407 33.333 0.00 0.00 37.87 4.08
165 166 8.963130 CACGACTTACTTAATGAAATTTTGCAA 58.037 29.630 0.00 0.00 37.87 4.08
166 167 9.180678 ACGACTTACTTAATGAAATTTTGCAAG 57.819 29.630 0.00 0.00 37.87 4.01
167 168 8.155923 CGACTTACTTAATGAAATTTTGCAAGC 58.844 33.333 0.00 0.00 37.87 4.01
168 169 9.196552 GACTTACTTAATGAAATTTTGCAAGCT 57.803 29.630 0.00 0.00 37.87 3.74
169 170 9.196552 ACTTACTTAATGAAATTTTGCAAGCTC 57.803 29.630 0.00 0.00 37.87 4.09
170 171 9.415544 CTTACTTAATGAAATTTTGCAAGCTCT 57.584 29.630 0.00 0.00 37.87 4.09
171 172 9.762933 TTACTTAATGAAATTTTGCAAGCTCTT 57.237 25.926 0.00 0.00 37.87 2.85
173 174 9.415544 ACTTAATGAAATTTTGCAAGCTCTTAG 57.584 29.630 0.00 0.00 37.87 2.18
174 175 9.630098 CTTAATGAAATTTTGCAAGCTCTTAGA 57.370 29.630 0.00 0.00 37.87 2.10
175 176 9.979578 TTAATGAAATTTTGCAAGCTCTTAGAA 57.020 25.926 0.00 0.00 37.87 2.10
176 177 7.880059 ATGAAATTTTGCAAGCTCTTAGAAC 57.120 32.000 0.00 0.00 0.00 3.01
177 178 6.804677 TGAAATTTTGCAAGCTCTTAGAACA 58.195 32.000 0.00 0.00 0.00 3.18
178 179 7.436118 TGAAATTTTGCAAGCTCTTAGAACAT 58.564 30.769 0.00 0.00 0.00 2.71
179 180 7.927629 TGAAATTTTGCAAGCTCTTAGAACATT 59.072 29.630 0.00 0.00 0.00 2.71
180 181 8.667076 AAATTTTGCAAGCTCTTAGAACATTT 57.333 26.923 0.00 0.00 0.00 2.32
181 182 7.647907 ATTTTGCAAGCTCTTAGAACATTTG 57.352 32.000 0.00 0.00 0.00 2.32
182 183 5.772825 TTGCAAGCTCTTAGAACATTTGT 57.227 34.783 0.00 0.00 0.00 2.83
183 184 5.362556 TGCAAGCTCTTAGAACATTTGTC 57.637 39.130 0.00 0.00 0.00 3.18
184 185 4.821260 TGCAAGCTCTTAGAACATTTGTCA 59.179 37.500 0.00 0.00 0.00 3.58
185 186 5.299028 TGCAAGCTCTTAGAACATTTGTCAA 59.701 36.000 0.00 0.00 0.00 3.18
186 187 6.183360 TGCAAGCTCTTAGAACATTTGTCAAA 60.183 34.615 0.00 0.00 0.00 2.69
187 188 6.361748 GCAAGCTCTTAGAACATTTGTCAAAG 59.638 38.462 4.03 0.00 0.00 2.77
188 189 7.420800 CAAGCTCTTAGAACATTTGTCAAAGT 58.579 34.615 4.03 0.09 0.00 2.66
189 190 7.573968 AGCTCTTAGAACATTTGTCAAAGTT 57.426 32.000 4.03 8.17 0.00 2.66
190 191 8.000780 AGCTCTTAGAACATTTGTCAAAGTTT 57.999 30.769 4.03 0.00 0.00 2.66
191 192 8.470002 AGCTCTTAGAACATTTGTCAAAGTTTT 58.530 29.630 4.03 6.55 0.00 2.43
192 193 8.746751 GCTCTTAGAACATTTGTCAAAGTTTTC 58.253 33.333 4.03 6.26 0.00 2.29
193 194 9.237846 CTCTTAGAACATTTGTCAAAGTTTTCC 57.762 33.333 4.03 0.00 0.00 3.13
194 195 8.744652 TCTTAGAACATTTGTCAAAGTTTTCCA 58.255 29.630 4.03 0.00 0.00 3.53
195 196 9.533253 CTTAGAACATTTGTCAAAGTTTTCCAT 57.467 29.630 4.03 0.00 0.00 3.41
196 197 9.883142 TTAGAACATTTGTCAAAGTTTTCCATT 57.117 25.926 4.03 0.00 0.00 3.16
198 199 9.533253 AGAACATTTGTCAAAGTTTTCCATTAG 57.467 29.630 4.03 0.00 0.00 1.73
199 200 9.528018 GAACATTTGTCAAAGTTTTCCATTAGA 57.472 29.630 4.03 0.00 0.00 2.10
200 201 9.883142 AACATTTGTCAAAGTTTTCCATTAGAA 57.117 25.926 4.03 0.00 0.00 2.10
201 202 9.883142 ACATTTGTCAAAGTTTTCCATTAGAAA 57.117 25.926 4.03 0.00 42.82 2.52
249 250 9.744468 AAATATGGTTTTTGAGTTACTGTTCAC 57.256 29.630 0.00 0.00 0.00 3.18
250 251 5.570234 TGGTTTTTGAGTTACTGTTCACC 57.430 39.130 0.00 0.00 0.00 4.02
251 252 4.399934 TGGTTTTTGAGTTACTGTTCACCC 59.600 41.667 0.00 0.00 0.00 4.61
252 253 4.202080 GGTTTTTGAGTTACTGTTCACCCC 60.202 45.833 0.00 0.00 0.00 4.95
253 254 3.935818 TTTGAGTTACTGTTCACCCCA 57.064 42.857 0.00 0.00 0.00 4.96
254 255 3.485463 TTGAGTTACTGTTCACCCCAG 57.515 47.619 0.00 0.00 36.01 4.45
255 256 1.071699 TGAGTTACTGTTCACCCCAGC 59.928 52.381 0.00 0.00 33.09 4.85
256 257 1.348036 GAGTTACTGTTCACCCCAGCT 59.652 52.381 0.00 0.00 33.09 4.24
257 258 1.348036 AGTTACTGTTCACCCCAGCTC 59.652 52.381 0.00 0.00 33.09 4.09
258 259 0.320374 TTACTGTTCACCCCAGCTCG 59.680 55.000 0.00 0.00 33.09 5.03
259 260 1.541310 TACTGTTCACCCCAGCTCGG 61.541 60.000 0.00 0.00 33.09 4.63
268 269 3.721868 CCAGCTCGGGGGTAGAAA 58.278 61.111 0.00 0.00 0.00 2.52
269 270 1.522569 CCAGCTCGGGGGTAGAAAG 59.477 63.158 0.00 0.00 0.00 2.62
270 271 1.522569 CAGCTCGGGGGTAGAAAGG 59.477 63.158 0.00 0.00 0.00 3.11
271 272 0.976073 CAGCTCGGGGGTAGAAAGGA 60.976 60.000 0.00 0.00 0.00 3.36
272 273 0.252558 AGCTCGGGGGTAGAAAGGAA 60.253 55.000 0.00 0.00 0.00 3.36
273 274 0.107800 GCTCGGGGGTAGAAAGGAAC 60.108 60.000 0.00 0.00 0.00 3.62
287 288 2.358322 AGGAACTTTCGCCCTTTTGA 57.642 45.000 0.00 0.00 27.25 2.69
288 289 2.230660 AGGAACTTTCGCCCTTTTGAG 58.769 47.619 0.00 0.00 27.25 3.02
289 290 1.269723 GGAACTTTCGCCCTTTTGAGG 59.730 52.381 0.00 0.00 0.00 3.86
290 291 1.954382 GAACTTTCGCCCTTTTGAGGT 59.046 47.619 0.00 0.00 0.00 3.85
291 292 1.605753 ACTTTCGCCCTTTTGAGGTC 58.394 50.000 0.00 0.00 0.00 3.85
292 293 1.133915 ACTTTCGCCCTTTTGAGGTCA 60.134 47.619 0.00 0.00 0.00 4.02
293 294 1.953686 CTTTCGCCCTTTTGAGGTCAA 59.046 47.619 0.00 0.00 0.00 3.18
294 295 2.286365 TTCGCCCTTTTGAGGTCAAT 57.714 45.000 0.00 0.00 35.55 2.57
295 296 3.426787 TTCGCCCTTTTGAGGTCAATA 57.573 42.857 0.00 0.00 35.55 1.90
296 297 3.426787 TCGCCCTTTTGAGGTCAATAA 57.573 42.857 0.00 0.00 35.55 1.40
297 298 3.963129 TCGCCCTTTTGAGGTCAATAAT 58.037 40.909 0.00 0.00 35.55 1.28
298 299 3.945285 TCGCCCTTTTGAGGTCAATAATC 59.055 43.478 0.00 0.00 35.55 1.75
299 300 3.694072 CGCCCTTTTGAGGTCAATAATCA 59.306 43.478 0.00 0.00 35.55 2.57
300 301 4.157656 CGCCCTTTTGAGGTCAATAATCAA 59.842 41.667 0.00 0.00 35.55 2.57
301 302 5.654497 GCCCTTTTGAGGTCAATAATCAAG 58.346 41.667 0.00 0.00 34.64 3.02
302 303 5.418840 GCCCTTTTGAGGTCAATAATCAAGA 59.581 40.000 0.00 0.00 34.64 3.02
303 304 6.071391 GCCCTTTTGAGGTCAATAATCAAGAA 60.071 38.462 0.00 0.00 34.64 2.52
304 305 7.315890 CCCTTTTGAGGTCAATAATCAAGAAC 58.684 38.462 0.00 0.00 34.64 3.01
305 306 7.039784 CCCTTTTGAGGTCAATAATCAAGAACA 60.040 37.037 0.00 0.00 34.64 3.18
306 307 8.359642 CCTTTTGAGGTCAATAATCAAGAACAA 58.640 33.333 0.00 0.00 34.64 2.83
307 308 9.403110 CTTTTGAGGTCAATAATCAAGAACAAG 57.597 33.333 0.00 0.00 34.64 3.16
308 309 7.452880 TTGAGGTCAATAATCAAGAACAAGG 57.547 36.000 0.00 0.00 0.00 3.61
309 310 6.542821 TGAGGTCAATAATCAAGAACAAGGT 58.457 36.000 0.00 0.00 0.00 3.50
310 311 7.685481 TGAGGTCAATAATCAAGAACAAGGTA 58.315 34.615 0.00 0.00 0.00 3.08
311 312 7.606456 TGAGGTCAATAATCAAGAACAAGGTAC 59.394 37.037 0.00 0.00 0.00 3.34
312 313 6.594159 AGGTCAATAATCAAGAACAAGGTACG 59.406 38.462 0.00 0.00 0.00 3.67
313 314 6.183360 GGTCAATAATCAAGAACAAGGTACGG 60.183 42.308 0.00 0.00 0.00 4.02
314 315 6.370718 GTCAATAATCAAGAACAAGGTACGGT 59.629 38.462 0.00 0.00 0.00 4.83
315 316 6.370442 TCAATAATCAAGAACAAGGTACGGTG 59.630 38.462 0.00 0.00 0.00 4.94
316 317 2.536761 TCAAGAACAAGGTACGGTGG 57.463 50.000 0.00 0.00 0.00 4.61
317 318 2.040939 TCAAGAACAAGGTACGGTGGA 58.959 47.619 0.00 0.00 0.00 4.02
322 323 1.079127 CAAGGTACGGTGGAGCAGG 60.079 63.158 0.00 0.00 0.00 4.85
484 799 5.848036 CGAGTTGATATTCGCATTCAAATCC 59.152 40.000 11.40 1.27 39.84 3.01
492 807 0.100503 GCATTCAAATCCCCGAACCG 59.899 55.000 0.00 0.00 0.00 4.44
573 891 3.402681 AGTCATGCACCCTCCCCG 61.403 66.667 0.00 0.00 0.00 5.73
646 965 1.136147 GACTGCCACGTCGTATCGT 59.864 57.895 0.00 0.00 45.10 3.73
797 1117 3.360340 GAGACACGACGTCCCGGT 61.360 66.667 10.58 5.51 46.69 5.28
900 1221 0.248458 CGACGGTGCCCATAAATTGC 60.248 55.000 0.00 0.00 0.00 3.56
975 1296 1.638529 TCGCCACCCCATTTCAAAAT 58.361 45.000 0.00 0.00 0.00 1.82
976 1297 1.974236 TCGCCACCCCATTTCAAAATT 59.026 42.857 0.00 0.00 0.00 1.82
977 1298 2.370189 TCGCCACCCCATTTCAAAATTT 59.630 40.909 0.00 0.00 0.00 1.82
978 1299 2.741517 CGCCACCCCATTTCAAAATTTC 59.258 45.455 0.00 0.00 0.00 2.17
979 1300 3.749226 GCCACCCCATTTCAAAATTTCA 58.251 40.909 0.00 0.00 0.00 2.69
980 1301 3.501828 GCCACCCCATTTCAAAATTTCAC 59.498 43.478 0.00 0.00 0.00 3.18
983 1304 4.756135 CACCCCATTTCAAAATTTCACAGG 59.244 41.667 0.00 0.00 0.00 4.00
984 1305 4.657969 ACCCCATTTCAAAATTTCACAGGA 59.342 37.500 0.00 0.00 0.00 3.86
985 1306 5.221702 ACCCCATTTCAAAATTTCACAGGAG 60.222 40.000 0.00 0.00 0.00 3.69
986 1307 5.011943 CCCCATTTCAAAATTTCACAGGAGA 59.988 40.000 0.00 0.00 0.00 3.71
987 1308 6.464180 CCCCATTTCAAAATTTCACAGGAGAA 60.464 38.462 0.00 0.00 0.00 2.87
988 1309 6.647895 CCCATTTCAAAATTTCACAGGAGAAG 59.352 38.462 0.00 0.00 0.00 2.85
989 1310 6.647895 CCATTTCAAAATTTCACAGGAGAAGG 59.352 38.462 0.00 0.00 0.00 3.46
990 1311 6.790232 TTTCAAAATTTCACAGGAGAAGGT 57.210 33.333 0.00 0.00 0.00 3.50
991 1312 6.790232 TTCAAAATTTCACAGGAGAAGGTT 57.210 33.333 0.00 0.00 0.00 3.50
992 1313 6.790232 TCAAAATTTCACAGGAGAAGGTTT 57.210 33.333 0.00 0.00 0.00 3.27
993 1314 6.805713 TCAAAATTTCACAGGAGAAGGTTTC 58.194 36.000 0.00 0.00 0.00 2.78
994 1315 5.438761 AAATTTCACAGGAGAAGGTTTCG 57.561 39.130 0.00 0.00 34.02 3.46
995 1316 1.878953 TTCACAGGAGAAGGTTTCGC 58.121 50.000 0.00 0.00 34.02 4.70
996 1317 0.319555 TCACAGGAGAAGGTTTCGCG 60.320 55.000 0.00 0.00 34.02 5.87
1006 1327 1.447838 GGTTTCGCGGAGATGCTGA 60.448 57.895 6.13 0.00 0.00 4.26
1014 1335 2.795110 GGAGATGCTGAGCGGCTCT 61.795 63.158 28.42 10.30 33.80 4.09
1021 1342 3.429080 CTGAGCGGCTCTCTCTGGC 62.429 68.421 28.42 2.87 42.38 4.85
1059 1380 4.382320 GCCGTGACCTTGGCCGTA 62.382 66.667 0.00 0.00 45.73 4.02
1060 1381 2.125673 CCGTGACCTTGGCCGTAG 60.126 66.667 0.00 0.00 0.00 3.51
1357 1678 2.225727 GCATTTTCCTTCTCGTTTCCGT 59.774 45.455 0.00 0.00 35.01 4.69
1363 1684 1.005394 TTCTCGTTTCCGTCTGCCC 60.005 57.895 0.00 0.00 35.01 5.36
1364 1685 1.750341 TTCTCGTTTCCGTCTGCCCA 61.750 55.000 0.00 0.00 35.01 5.36
1365 1686 1.738099 CTCGTTTCCGTCTGCCCAG 60.738 63.158 0.00 0.00 35.01 4.45
1379 1700 1.510844 CCCAGTTAACCGGCATTGC 59.489 57.895 0.00 0.00 0.00 3.56
1393 1714 2.267426 GCATTGCCCATTTCGTTAACC 58.733 47.619 0.00 0.00 0.00 2.85
1396 1717 0.036448 TGCCCATTTCGTTAACCGGA 59.964 50.000 9.46 0.00 37.11 5.14
1397 1718 0.730840 GCCCATTTCGTTAACCGGAG 59.269 55.000 9.46 0.00 37.11 4.63
1398 1719 1.947212 GCCCATTTCGTTAACCGGAGT 60.947 52.381 9.46 0.00 37.11 3.85
1433 1759 4.081697 TGACACTGTTCAGAGTTCAGACAA 60.082 41.667 6.83 0.00 33.93 3.18
1435 1761 4.183865 CACTGTTCAGAGTTCAGACAACA 58.816 43.478 6.83 0.00 33.93 3.33
1437 1763 3.531538 TGTTCAGAGTTCAGACAACACC 58.468 45.455 0.00 0.00 0.00 4.16
1438 1764 3.197766 TGTTCAGAGTTCAGACAACACCT 59.802 43.478 0.00 0.00 0.00 4.00
1439 1765 4.404394 TGTTCAGAGTTCAGACAACACCTA 59.596 41.667 0.00 0.00 0.00 3.08
1440 1766 4.585955 TCAGAGTTCAGACAACACCTAC 57.414 45.455 0.00 0.00 0.00 3.18
1474 1800 1.905687 GAGTTCGACACTCGTCATTCG 59.094 52.381 10.56 0.00 42.82 3.34
1536 1862 5.060506 TCTCGAGCACATTAAGGTGAAAAA 58.939 37.500 23.53 5.25 41.32 1.94
1563 1891 0.482446 TTGGTCCCCTGCATTTGTCT 59.518 50.000 0.00 0.00 0.00 3.41
1566 1894 1.680249 GGTCCCCTGCATTTGTCTCTC 60.680 57.143 0.00 0.00 0.00 3.20
1567 1895 0.250234 TCCCCTGCATTTGTCTCTCG 59.750 55.000 0.00 0.00 0.00 4.04
1568 1896 0.250234 CCCCTGCATTTGTCTCTCGA 59.750 55.000 0.00 0.00 0.00 4.04
1569 1897 1.649664 CCCTGCATTTGTCTCTCGAG 58.350 55.000 5.93 5.93 0.00 4.04
1570 1898 1.005340 CCTGCATTTGTCTCTCGAGC 58.995 55.000 7.81 0.00 0.00 5.03
1571 1899 1.673923 CCTGCATTTGTCTCTCGAGCA 60.674 52.381 7.81 0.00 0.00 4.26
1572 1900 1.392853 CTGCATTTGTCTCTCGAGCAC 59.607 52.381 7.81 7.48 0.00 4.40
1573 1901 1.270252 TGCATTTGTCTCTCGAGCACA 60.270 47.619 7.81 10.21 0.00 4.57
1574 1902 2.005451 GCATTTGTCTCTCGAGCACAT 58.995 47.619 15.34 1.97 0.00 3.21
1637 1989 3.357079 GACGCCCAACTGCAGTGG 61.357 66.667 22.49 21.94 0.00 4.00
1641 1993 1.526575 CGCCCAACTGCAGTGGATTT 61.527 55.000 27.05 9.20 0.00 2.17
1645 1997 2.890311 CCCAACTGCAGTGGATTTTGTA 59.110 45.455 27.05 0.00 0.00 2.41
1648 2000 4.759693 CCAACTGCAGTGGATTTTGTACTA 59.240 41.667 23.44 0.00 0.00 1.82
1665 2017 6.641176 TGTACTAGTTGACGCATAAATGTG 57.359 37.500 0.00 2.02 43.60 3.21
1679 2031 8.492920 CGCATAAATGTGTTAGTAATTGATGG 57.507 34.615 0.00 0.00 33.79 3.51
1704 2056 7.807433 GGATTAAATTGGGTTTTTGCAATGAAC 59.193 33.333 14.52 14.52 0.00 3.18
1705 2057 4.809815 AATTGGGTTTTTGCAATGAACG 57.190 36.364 15.71 0.00 0.00 3.95
1710 2062 1.123928 TTTTTGCAATGAACGGGGGT 58.876 45.000 0.00 0.00 0.00 4.95
1716 2073 1.616159 CAATGAACGGGGGTGAAGTT 58.384 50.000 0.00 0.00 0.00 2.66
1728 2085 2.038033 GGGTGAAGTTGTACCAGTAGCA 59.962 50.000 7.88 0.00 38.74 3.49
1729 2088 3.064931 GGTGAAGTTGTACCAGTAGCAC 58.935 50.000 0.00 0.00 36.94 4.40
1739 2098 3.101643 ACCAGTAGCACCACAGATCTA 57.898 47.619 0.00 0.00 0.00 1.98
1741 2100 3.027412 CCAGTAGCACCACAGATCTACT 58.973 50.000 0.00 0.00 41.51 2.57
1742 2101 4.207955 CCAGTAGCACCACAGATCTACTA 58.792 47.826 0.00 0.00 39.55 1.82
1743 2102 4.036971 CCAGTAGCACCACAGATCTACTAC 59.963 50.000 0.00 1.54 39.55 2.73
1744 2103 4.640647 CAGTAGCACCACAGATCTACTACA 59.359 45.833 0.00 0.00 39.55 2.74
1747 2106 4.090090 AGCACCACAGATCTACTACACTT 58.910 43.478 0.00 0.00 0.00 3.16
1775 2152 7.645402 TGTGTGTATGTACATAAGGATACGAG 58.355 38.462 17.07 0.00 39.41 4.18
1778 2155 7.022384 GTGTATGTACATAAGGATACGAGAGC 58.978 42.308 17.07 1.33 39.41 4.09
1796 2173 6.860023 ACGAGAGCATTTCATTTTCTTTTGAG 59.140 34.615 0.00 0.00 0.00 3.02
1797 2174 6.307318 CGAGAGCATTTCATTTTCTTTTGAGG 59.693 38.462 0.00 0.00 0.00 3.86
1798 2175 7.059202 AGAGCATTTCATTTTCTTTTGAGGT 57.941 32.000 0.00 0.00 0.00 3.85
1799 2176 6.927381 AGAGCATTTCATTTTCTTTTGAGGTG 59.073 34.615 0.00 0.00 0.00 4.00
1822 2225 3.409026 AAAAGTGAGAGCATCGTCCTT 57.591 42.857 0.00 0.00 42.67 3.36
1823 2226 2.376808 AAGTGAGAGCATCGTCCTTG 57.623 50.000 0.00 0.00 42.67 3.61
1825 2228 0.390340 GTGAGAGCATCGTCCTTGCA 60.390 55.000 0.00 0.00 42.62 4.08
1862 2280 9.101655 GGCTTAATTAAGTCATGAATTGCATTT 57.898 29.630 22.08 8.64 37.82 2.32
1878 2331 4.233789 TGCATTTAAGAAACGTTCATGGC 58.766 39.130 0.00 0.00 0.00 4.40
1918 2371 6.866770 TGTCTTAGACGTGAATTCAACTAAGG 59.133 38.462 30.91 22.18 37.20 2.69
1981 2443 5.824624 GGATTCTGCATTATTCAGGAGACAA 59.175 40.000 0.00 0.00 31.71 3.18
2055 2517 5.061435 CGAGCATATCTAATCATGGTGAACG 59.939 44.000 0.00 0.00 33.25 3.95
2070 2532 2.031944 GTGAACGAGCCAGGTTTTTCTC 60.032 50.000 0.00 0.00 0.00 2.87
2079 2565 2.561569 CAGGTTTTTCTCAGACGTGGT 58.438 47.619 0.00 0.00 0.00 4.16
2194 2684 2.897271 TTCTGCCCCTTTGAGCATAA 57.103 45.000 0.00 0.00 38.56 1.90
2195 2685 3.386932 TTCTGCCCCTTTGAGCATAAT 57.613 42.857 0.00 0.00 38.56 1.28
2196 2686 4.518278 TTCTGCCCCTTTGAGCATAATA 57.482 40.909 0.00 0.00 38.56 0.98
2208 2699 7.361542 CCTTTGAGCATAATATGTAGTCATGGC 60.362 40.741 1.92 0.00 35.70 4.40
2232 2728 5.062934 CGTCCACGTTTAAATCTTATCTGCA 59.937 40.000 0.00 0.00 34.11 4.41
2270 2769 6.595772 ACTAAGAATGAAGATCGACATTGC 57.404 37.500 19.46 13.05 36.94 3.56
2271 2770 6.108687 ACTAAGAATGAAGATCGACATTGCA 58.891 36.000 19.46 0.00 36.94 4.08
2444 2945 1.546961 CCGACTTCCACACCTACTCT 58.453 55.000 0.00 0.00 0.00 3.24
2475 2976 0.930310 CCCGCTCAACATCATGTACG 59.070 55.000 0.00 0.00 0.00 3.67
2480 2981 2.802816 GCTCAACATCATGTACGGATCC 59.197 50.000 0.00 0.00 0.00 3.36
2509 3010 0.740868 AGCACCATCGTCGTCAATGG 60.741 55.000 9.31 9.31 46.53 3.16
2526 3027 4.135306 CAATGGTTCATCTCTCCATCCTG 58.865 47.826 0.00 0.00 40.52 3.86
2527 3028 3.120468 TGGTTCATCTCTCCATCCTGA 57.880 47.619 0.00 0.00 0.00 3.86
2528 3029 3.036819 TGGTTCATCTCTCCATCCTGAG 58.963 50.000 0.00 0.00 0.00 3.35
2529 3030 3.037549 GGTTCATCTCTCCATCCTGAGT 58.962 50.000 0.00 0.00 33.93 3.41
2532 3033 4.262891 TCATCTCTCCATCCTGAGTTCT 57.737 45.455 0.00 0.00 33.93 3.01
2533 3034 4.214310 TCATCTCTCCATCCTGAGTTCTC 58.786 47.826 0.00 0.00 33.93 2.87
2535 3036 3.630168 TCTCTCCATCCTGAGTTCTCTG 58.370 50.000 1.53 1.10 33.93 3.35
2536 3037 3.268072 TCTCTCCATCCTGAGTTCTCTGA 59.732 47.826 8.00 2.66 33.93 3.27
2547 3055 4.502016 TGAGTTCTCTGACATGATCTTGC 58.498 43.478 8.45 2.96 0.00 4.01
2558 3066 5.650703 TGACATGATCTTGCTGATTGATTGT 59.349 36.000 8.45 0.00 35.14 2.71
2559 3067 5.891451 ACATGATCTTGCTGATTGATTGTG 58.109 37.500 8.45 0.00 35.14 3.33
2560 3068 4.976224 TGATCTTGCTGATTGATTGTGG 57.024 40.909 0.00 0.00 35.14 4.17
2561 3069 4.338012 TGATCTTGCTGATTGATTGTGGT 58.662 39.130 0.00 0.00 35.14 4.16
2562 3070 4.768448 TGATCTTGCTGATTGATTGTGGTT 59.232 37.500 0.00 0.00 35.14 3.67
2563 3071 4.771590 TCTTGCTGATTGATTGTGGTTC 57.228 40.909 0.00 0.00 0.00 3.62
2564 3072 3.189080 TCTTGCTGATTGATTGTGGTTCG 59.811 43.478 0.00 0.00 0.00 3.95
2565 3073 2.503331 TGCTGATTGATTGTGGTTCGT 58.497 42.857 0.00 0.00 0.00 3.85
2566 3074 2.884012 TGCTGATTGATTGTGGTTCGTT 59.116 40.909 0.00 0.00 0.00 3.85
2567 3075 4.068599 TGCTGATTGATTGTGGTTCGTTA 58.931 39.130 0.00 0.00 0.00 3.18
2571 3079 5.060506 TGATTGATTGTGGTTCGTTACAGT 58.939 37.500 0.00 0.00 0.00 3.55
2999 3512 0.321021 AGGATCTGATCTGATGGCGC 59.679 55.000 18.72 0.00 0.00 6.53
3081 3599 2.824689 TGCAGGGATTGGATTTGCTA 57.175 45.000 0.00 0.00 35.85 3.49
3102 3620 5.124617 GCTACCAGCAGAATTAAAAGAGCTT 59.875 40.000 0.00 0.00 41.89 3.74
3103 3621 5.635417 ACCAGCAGAATTAAAAGAGCTTC 57.365 39.130 0.00 0.00 0.00 3.86
3104 3622 5.072741 ACCAGCAGAATTAAAAGAGCTTCA 58.927 37.500 0.00 0.00 0.00 3.02
3105 3623 5.182760 ACCAGCAGAATTAAAAGAGCTTCAG 59.817 40.000 0.00 0.00 0.00 3.02
3106 3624 5.182760 CCAGCAGAATTAAAAGAGCTTCAGT 59.817 40.000 0.00 0.00 0.00 3.41
3107 3625 6.294397 CCAGCAGAATTAAAAGAGCTTCAGTT 60.294 38.462 0.00 0.00 0.00 3.16
3108 3626 7.144000 CAGCAGAATTAAAAGAGCTTCAGTTT 58.856 34.615 0.00 0.00 0.00 2.66
3109 3627 7.325579 CAGCAGAATTAAAAGAGCTTCAGTTTC 59.674 37.037 0.00 0.00 0.00 2.78
3110 3628 6.304208 GCAGAATTAAAAGAGCTTCAGTTTCG 59.696 38.462 0.00 0.00 0.00 3.46
3133 3651 3.751175 TCTGTGGAAAAACATGATCGGAC 59.249 43.478 0.00 0.00 0.00 4.79
3162 3680 5.767816 AGGTCGCAGTTTCTTGTTTTTAT 57.232 34.783 0.00 0.00 0.00 1.40
3167 3685 5.298276 TCGCAGTTTCTTGTTTTTATCCTGT 59.702 36.000 0.00 0.00 0.00 4.00
3174 3692 5.596845 TCTTGTTTTTATCCTGTGTTTGCC 58.403 37.500 0.00 0.00 0.00 4.52
3181 3699 0.758685 TCCTGTGTTTGCCCCCTTTG 60.759 55.000 0.00 0.00 0.00 2.77
3183 3701 1.382420 TGTGTTTGCCCCCTTTGCT 60.382 52.632 0.00 0.00 0.00 3.91
3207 3725 3.655276 TTCTTTCCCACTCGTGACTAC 57.345 47.619 0.00 0.00 0.00 2.73
3216 3734 2.277756 CGTGACTACGGCGGCTAC 60.278 66.667 13.24 1.85 46.23 3.58
3217 3735 2.103736 GTGACTACGGCGGCTACC 59.896 66.667 13.24 0.00 0.00 3.18
3218 3736 2.361483 TGACTACGGCGGCTACCA 60.361 61.111 13.24 0.00 0.00 3.25
3219 3737 1.978080 TGACTACGGCGGCTACCAA 60.978 57.895 13.24 0.00 0.00 3.67
3220 3738 1.216178 GACTACGGCGGCTACCAAA 59.784 57.895 13.24 0.00 0.00 3.28
3221 3739 0.390209 GACTACGGCGGCTACCAAAA 60.390 55.000 13.24 0.00 0.00 2.44
3222 3740 0.035176 ACTACGGCGGCTACCAAAAA 59.965 50.000 13.24 0.00 0.00 1.94
3223 3741 1.339342 ACTACGGCGGCTACCAAAAAT 60.339 47.619 13.24 0.00 0.00 1.82
3224 3742 1.063469 CTACGGCGGCTACCAAAAATG 59.937 52.381 13.24 0.00 0.00 2.32
3225 3743 1.516169 CGGCGGCTACCAAAAATGC 60.516 57.895 7.61 0.00 0.00 3.56
3226 3744 1.890174 GGCGGCTACCAAAAATGCT 59.110 52.632 0.00 0.00 0.00 3.79
3227 3745 1.099689 GGCGGCTACCAAAAATGCTA 58.900 50.000 0.00 0.00 0.00 3.49
3228 3746 1.202256 GGCGGCTACCAAAAATGCTAC 60.202 52.381 0.00 0.00 0.00 3.58
3229 3747 1.470890 GCGGCTACCAAAAATGCTACA 59.529 47.619 0.00 0.00 0.00 2.74
3230 3748 2.731027 GCGGCTACCAAAAATGCTACAC 60.731 50.000 0.00 0.00 0.00 2.90
3231 3749 2.747446 CGGCTACCAAAAATGCTACACT 59.253 45.455 0.00 0.00 0.00 3.55
3232 3750 3.936453 CGGCTACCAAAAATGCTACACTA 59.064 43.478 0.00 0.00 0.00 2.74
3233 3751 4.393680 CGGCTACCAAAAATGCTACACTAA 59.606 41.667 0.00 0.00 0.00 2.24
3234 3752 5.637809 GGCTACCAAAAATGCTACACTAAC 58.362 41.667 0.00 0.00 0.00 2.34
3235 3753 5.321516 GCTACCAAAAATGCTACACTAACG 58.678 41.667 0.00 0.00 0.00 3.18
3236 3754 4.759516 ACCAAAAATGCTACACTAACGG 57.240 40.909 0.00 0.00 0.00 4.44
3237 3755 4.391155 ACCAAAAATGCTACACTAACGGA 58.609 39.130 0.00 0.00 0.00 4.69
3238 3756 4.822896 ACCAAAAATGCTACACTAACGGAA 59.177 37.500 0.00 0.00 0.00 4.30
3239 3757 5.048991 ACCAAAAATGCTACACTAACGGAAG 60.049 40.000 0.00 0.00 0.00 3.46
3240 3758 4.680171 AAAATGCTACACTAACGGAAGC 57.320 40.909 0.00 0.00 0.00 3.86
3241 3759 3.611766 AATGCTACACTAACGGAAGCT 57.388 42.857 0.00 0.00 34.28 3.74
3242 3760 3.611766 ATGCTACACTAACGGAAGCTT 57.388 42.857 0.00 0.00 34.28 3.74
3243 3761 3.396260 TGCTACACTAACGGAAGCTTT 57.604 42.857 0.00 0.00 34.28 3.51
3244 3762 3.323243 TGCTACACTAACGGAAGCTTTC 58.677 45.455 0.00 0.00 34.28 2.62
3245 3763 3.006537 TGCTACACTAACGGAAGCTTTCT 59.993 43.478 0.00 0.00 34.28 2.52
3246 3764 4.219070 TGCTACACTAACGGAAGCTTTCTA 59.781 41.667 0.00 0.00 34.28 2.10
3247 3765 4.562000 GCTACACTAACGGAAGCTTTCTAC 59.438 45.833 0.00 0.00 0.00 2.59
3248 3766 4.595762 ACACTAACGGAAGCTTTCTACA 57.404 40.909 0.00 0.00 0.00 2.74
3249 3767 4.557205 ACACTAACGGAAGCTTTCTACAG 58.443 43.478 0.00 0.00 0.00 2.74
3250 3768 4.280174 ACACTAACGGAAGCTTTCTACAGA 59.720 41.667 0.00 0.00 0.00 3.41
3251 3769 5.047235 ACACTAACGGAAGCTTTCTACAGAT 60.047 40.000 0.00 0.00 0.00 2.90
3252 3770 5.869888 CACTAACGGAAGCTTTCTACAGATT 59.130 40.000 0.00 0.00 0.00 2.40
3253 3771 5.869888 ACTAACGGAAGCTTTCTACAGATTG 59.130 40.000 0.00 0.00 0.00 2.67
3254 3772 4.273148 ACGGAAGCTTTCTACAGATTGT 57.727 40.909 0.00 0.00 0.00 2.71
3255 3773 4.642429 ACGGAAGCTTTCTACAGATTGTT 58.358 39.130 0.00 0.00 0.00 2.83
3256 3774 5.063880 ACGGAAGCTTTCTACAGATTGTTT 58.936 37.500 0.00 0.00 0.00 2.83
3257 3775 5.531287 ACGGAAGCTTTCTACAGATTGTTTT 59.469 36.000 0.00 0.00 0.00 2.43
3258 3776 6.080406 CGGAAGCTTTCTACAGATTGTTTTC 58.920 40.000 0.00 0.00 0.00 2.29
3259 3777 6.293407 CGGAAGCTTTCTACAGATTGTTTTCA 60.293 38.462 0.00 0.00 0.00 2.69
3260 3778 6.858478 GGAAGCTTTCTACAGATTGTTTTCAC 59.142 38.462 0.00 0.00 0.00 3.18
3261 3779 5.990408 AGCTTTCTACAGATTGTTTTCACG 58.010 37.500 0.00 0.00 0.00 4.35
3262 3780 5.049405 AGCTTTCTACAGATTGTTTTCACGG 60.049 40.000 0.00 0.00 0.00 4.94
3263 3781 5.049680 GCTTTCTACAGATTGTTTTCACGGA 60.050 40.000 0.00 0.00 0.00 4.69
3264 3782 5.917541 TTCTACAGATTGTTTTCACGGAC 57.082 39.130 0.00 0.00 0.00 4.79
3265 3783 3.985279 TCTACAGATTGTTTTCACGGACG 59.015 43.478 0.00 0.00 0.00 4.79
3266 3784 2.828877 ACAGATTGTTTTCACGGACGA 58.171 42.857 0.00 0.00 0.00 4.20
3267 3785 2.542595 ACAGATTGTTTTCACGGACGAC 59.457 45.455 0.00 0.00 0.00 4.34
3347 3867 1.848652 TTTTTGTCCGTTTGGGTGGA 58.151 45.000 0.00 0.00 37.00 4.02
3380 3905 4.200092 GGCGTCCATCCTCTTTAAGATTT 58.800 43.478 0.00 0.00 0.00 2.17
3445 3970 5.457473 CGCACGTAAATTTTGAAAAAGGTCT 59.543 36.000 0.00 0.00 0.00 3.85
3500 4027 2.802667 CGAAGTTCATGCCGGCTCG 61.803 63.158 29.70 22.13 0.00 5.03
3622 4156 2.494530 GCACACAAAAAGGGGCGGA 61.495 57.895 0.00 0.00 0.00 5.54
3637 4171 2.019951 CGGAAGTTCGACCACACCG 61.020 63.158 9.99 9.99 34.39 4.94
3667 4203 0.890542 GGTCATGCCAGCACACTTGA 60.891 55.000 0.00 0.00 37.17 3.02
3722 4259 1.195448 GGTCACTCGTCGTCGAACTTA 59.805 52.381 6.19 0.00 45.61 2.24
3733 4270 2.602878 GTCGAACTTAAGCATGTCGGA 58.397 47.619 1.29 0.00 0.00 4.55
3815 4353 1.066143 GTCTCCACCACCGTCATCATT 60.066 52.381 0.00 0.00 0.00 2.57
3816 4354 1.628340 TCTCCACCACCGTCATCATTT 59.372 47.619 0.00 0.00 0.00 2.32
3829 4367 4.036027 CGTCATCATTTTAGCAAGAGCCAT 59.964 41.667 0.00 0.00 43.56 4.40
3843 4381 1.812571 GAGCCATTTCTTTCGCCTTGA 59.187 47.619 0.00 0.00 0.00 3.02
3963 4501 3.457380 CCTCCTTTGGATCTCCATGAAGA 59.543 47.826 10.83 0.00 46.97 2.87
3986 4524 4.036380 ACGTTCATTTGTTCTTCCTTGTCC 59.964 41.667 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.598517 TCATGAAAGTTTGCAAGTTCTTAAAAT 57.401 25.926 16.06 8.18 0.00 1.82
42 43 8.868916 GTCATGAAAGTTTGCAAGTTCTTAAAA 58.131 29.630 16.06 6.83 0.00 1.52
43 44 8.031864 TGTCATGAAAGTTTGCAAGTTCTTAAA 58.968 29.630 16.06 8.51 0.00 1.52
44 45 7.542890 TGTCATGAAAGTTTGCAAGTTCTTAA 58.457 30.769 16.06 8.75 0.00 1.85
45 46 7.094508 TGTCATGAAAGTTTGCAAGTTCTTA 57.905 32.000 16.06 4.56 0.00 2.10
46 47 5.964758 TGTCATGAAAGTTTGCAAGTTCTT 58.035 33.333 16.06 12.02 0.00 2.52
47 48 5.581126 TGTCATGAAAGTTTGCAAGTTCT 57.419 34.783 16.06 7.71 0.00 3.01
48 49 5.978919 TGATGTCATGAAAGTTTGCAAGTTC 59.021 36.000 0.00 5.99 0.00 3.01
49 50 5.750067 GTGATGTCATGAAAGTTTGCAAGTT 59.250 36.000 0.00 0.00 0.00 2.66
50 51 5.163530 TGTGATGTCATGAAAGTTTGCAAGT 60.164 36.000 0.00 0.00 0.00 3.16
51 52 5.283294 TGTGATGTCATGAAAGTTTGCAAG 58.717 37.500 0.00 0.00 0.00 4.01
52 53 5.259832 TGTGATGTCATGAAAGTTTGCAA 57.740 34.783 0.00 0.00 0.00 4.08
53 54 4.915158 TGTGATGTCATGAAAGTTTGCA 57.085 36.364 0.00 0.00 0.00 4.08
54 55 6.201425 ACAAATGTGATGTCATGAAAGTTTGC 59.799 34.615 0.00 0.00 0.00 3.68
55 56 7.703298 ACAAATGTGATGTCATGAAAGTTTG 57.297 32.000 0.00 5.39 0.00 2.93
71 72 7.536895 TTTTTCCATGACTTTCACAAATGTG 57.463 32.000 7.22 7.22 46.91 3.21
102 103 8.977505 GCTTTCAAAAGTAGCATTTTCATTGTA 58.022 29.630 4.54 0.00 38.28 2.41
103 104 7.495279 TGCTTTCAAAAGTAGCATTTTCATTGT 59.505 29.630 4.54 0.00 39.79 2.71
104 105 7.853524 TGCTTTCAAAAGTAGCATTTTCATTG 58.146 30.769 4.54 0.00 39.79 2.82
114 115 6.292865 GGGAAAACAATGCTTTCAAAAGTAGC 60.293 38.462 10.73 0.00 38.28 3.58
115 116 6.760770 TGGGAAAACAATGCTTTCAAAAGTAG 59.239 34.615 10.73 0.00 38.28 2.57
116 117 6.536941 GTGGGAAAACAATGCTTTCAAAAGTA 59.463 34.615 10.73 0.30 38.28 2.24
117 118 5.353956 GTGGGAAAACAATGCTTTCAAAAGT 59.646 36.000 10.73 0.00 38.28 2.66
118 119 5.502220 CGTGGGAAAACAATGCTTTCAAAAG 60.502 40.000 10.73 0.00 39.03 2.27
119 120 4.331168 CGTGGGAAAACAATGCTTTCAAAA 59.669 37.500 10.73 0.00 34.99 2.44
120 121 3.868077 CGTGGGAAAACAATGCTTTCAAA 59.132 39.130 10.73 0.00 34.99 2.69
121 122 3.131223 TCGTGGGAAAACAATGCTTTCAA 59.869 39.130 10.73 0.00 34.99 2.69
122 123 2.690497 TCGTGGGAAAACAATGCTTTCA 59.310 40.909 10.73 0.00 34.99 2.69
123 124 3.049912 GTCGTGGGAAAACAATGCTTTC 58.950 45.455 0.78 0.78 32.96 2.62
124 125 2.693074 AGTCGTGGGAAAACAATGCTTT 59.307 40.909 0.00 0.00 0.00 3.51
125 126 2.306847 AGTCGTGGGAAAACAATGCTT 58.693 42.857 0.00 0.00 0.00 3.91
126 127 1.981256 AGTCGTGGGAAAACAATGCT 58.019 45.000 0.00 0.00 0.00 3.79
127 128 2.793278 AAGTCGTGGGAAAACAATGC 57.207 45.000 0.00 0.00 0.00 3.56
128 129 5.432885 AAGTAAGTCGTGGGAAAACAATG 57.567 39.130 0.00 0.00 0.00 2.82
129 130 7.446013 TCATTAAGTAAGTCGTGGGAAAACAAT 59.554 33.333 0.00 0.00 0.00 2.71
130 131 6.766944 TCATTAAGTAAGTCGTGGGAAAACAA 59.233 34.615 0.00 0.00 0.00 2.83
131 132 6.289834 TCATTAAGTAAGTCGTGGGAAAACA 58.710 36.000 0.00 0.00 0.00 2.83
132 133 6.790285 TCATTAAGTAAGTCGTGGGAAAAC 57.210 37.500 0.00 0.00 0.00 2.43
133 134 7.804843 TTTCATTAAGTAAGTCGTGGGAAAA 57.195 32.000 0.00 0.00 0.00 2.29
134 135 7.989416 ATTTCATTAAGTAAGTCGTGGGAAA 57.011 32.000 0.00 0.00 0.00 3.13
135 136 7.989416 AATTTCATTAAGTAAGTCGTGGGAA 57.011 32.000 0.00 0.00 0.00 3.97
136 137 7.989416 AAATTTCATTAAGTAAGTCGTGGGA 57.011 32.000 0.00 0.00 0.00 4.37
137 138 7.061789 GCAAAATTTCATTAAGTAAGTCGTGGG 59.938 37.037 0.00 0.00 0.00 4.61
138 139 7.593273 TGCAAAATTTCATTAAGTAAGTCGTGG 59.407 33.333 0.00 0.00 0.00 4.94
139 140 8.500837 TGCAAAATTTCATTAAGTAAGTCGTG 57.499 30.769 0.00 0.00 0.00 4.35
140 141 9.180678 CTTGCAAAATTTCATTAAGTAAGTCGT 57.819 29.630 0.00 0.00 0.00 4.34
141 142 8.155923 GCTTGCAAAATTTCATTAAGTAAGTCG 58.844 33.333 0.00 0.00 0.00 4.18
142 143 9.196552 AGCTTGCAAAATTTCATTAAGTAAGTC 57.803 29.630 0.00 0.00 0.00 3.01
143 144 9.196552 GAGCTTGCAAAATTTCATTAAGTAAGT 57.803 29.630 0.00 0.00 0.00 2.24
144 145 9.415544 AGAGCTTGCAAAATTTCATTAAGTAAG 57.584 29.630 0.00 0.00 0.00 2.34
145 146 9.762933 AAGAGCTTGCAAAATTTCATTAAGTAA 57.237 25.926 0.00 0.00 0.00 2.24
147 148 9.415544 CTAAGAGCTTGCAAAATTTCATTAAGT 57.584 29.630 0.00 0.00 0.00 2.24
148 149 9.630098 TCTAAGAGCTTGCAAAATTTCATTAAG 57.370 29.630 0.00 0.00 0.00 1.85
149 150 9.979578 TTCTAAGAGCTTGCAAAATTTCATTAA 57.020 25.926 0.00 0.00 0.00 1.40
150 151 9.410556 GTTCTAAGAGCTTGCAAAATTTCATTA 57.589 29.630 0.00 0.00 0.00 1.90
151 152 7.927629 TGTTCTAAGAGCTTGCAAAATTTCATT 59.072 29.630 0.00 0.00 0.00 2.57
152 153 7.436118 TGTTCTAAGAGCTTGCAAAATTTCAT 58.564 30.769 0.00 0.00 0.00 2.57
153 154 6.804677 TGTTCTAAGAGCTTGCAAAATTTCA 58.195 32.000 0.00 0.00 0.00 2.69
154 155 7.880059 ATGTTCTAAGAGCTTGCAAAATTTC 57.120 32.000 0.00 0.00 0.00 2.17
155 156 8.553696 CAAATGTTCTAAGAGCTTGCAAAATTT 58.446 29.630 0.00 0.00 0.00 1.82
156 157 7.712205 ACAAATGTTCTAAGAGCTTGCAAAATT 59.288 29.630 0.00 0.00 0.00 1.82
157 158 7.212274 ACAAATGTTCTAAGAGCTTGCAAAAT 58.788 30.769 0.00 0.00 0.00 1.82
158 159 6.572519 ACAAATGTTCTAAGAGCTTGCAAAA 58.427 32.000 0.00 0.00 0.00 2.44
159 160 6.147864 ACAAATGTTCTAAGAGCTTGCAAA 57.852 33.333 0.00 0.00 0.00 3.68
160 161 5.299028 TGACAAATGTTCTAAGAGCTTGCAA 59.701 36.000 0.00 0.00 0.00 4.08
161 162 4.821260 TGACAAATGTTCTAAGAGCTTGCA 59.179 37.500 0.00 0.00 0.00 4.08
162 163 5.362556 TGACAAATGTTCTAAGAGCTTGC 57.637 39.130 0.00 0.00 0.00 4.01
163 164 7.420800 ACTTTGACAAATGTTCTAAGAGCTTG 58.579 34.615 0.05 0.00 0.00 4.01
164 165 7.573968 ACTTTGACAAATGTTCTAAGAGCTT 57.426 32.000 0.05 0.00 0.00 3.74
165 166 7.573968 AACTTTGACAAATGTTCTAAGAGCT 57.426 32.000 0.05 0.00 30.10 4.09
166 167 8.634475 AAAACTTTGACAAATGTTCTAAGAGC 57.366 30.769 0.05 0.00 33.75 4.09
167 168 9.237846 GGAAAACTTTGACAAATGTTCTAAGAG 57.762 33.333 0.05 0.00 33.75 2.85
168 169 8.744652 TGGAAAACTTTGACAAATGTTCTAAGA 58.255 29.630 0.05 0.00 33.75 2.10
169 170 8.925161 TGGAAAACTTTGACAAATGTTCTAAG 57.075 30.769 0.05 0.00 33.75 2.18
170 171 9.883142 AATGGAAAACTTTGACAAATGTTCTAA 57.117 25.926 0.05 0.71 33.75 2.10
172 173 9.533253 CTAATGGAAAACTTTGACAAATGTTCT 57.467 29.630 0.05 0.00 33.75 3.01
173 174 9.528018 TCTAATGGAAAACTTTGACAAATGTTC 57.472 29.630 0.05 5.64 33.75 3.18
174 175 9.883142 TTCTAATGGAAAACTTTGACAAATGTT 57.117 25.926 0.05 5.66 35.73 2.71
175 176 9.883142 TTTCTAATGGAAAACTTTGACAAATGT 57.117 25.926 0.05 0.00 40.51 2.71
223 224 9.744468 GTGAACAGTAACTCAAAAACCATATTT 57.256 29.630 0.00 0.00 0.00 1.40
224 225 8.357402 GGTGAACAGTAACTCAAAAACCATATT 58.643 33.333 0.00 0.00 0.00 1.28
225 226 7.039993 GGGTGAACAGTAACTCAAAAACCATAT 60.040 37.037 0.00 0.00 0.00 1.78
226 227 6.263617 GGGTGAACAGTAACTCAAAAACCATA 59.736 38.462 0.00 0.00 0.00 2.74
227 228 5.068591 GGGTGAACAGTAACTCAAAAACCAT 59.931 40.000 0.00 0.00 0.00 3.55
228 229 4.399934 GGGTGAACAGTAACTCAAAAACCA 59.600 41.667 0.00 0.00 0.00 3.67
229 230 4.202080 GGGGTGAACAGTAACTCAAAAACC 60.202 45.833 0.00 0.00 0.00 3.27
230 231 4.399934 TGGGGTGAACAGTAACTCAAAAAC 59.600 41.667 0.00 0.00 0.00 2.43
231 232 4.601084 TGGGGTGAACAGTAACTCAAAAA 58.399 39.130 0.00 0.00 0.00 1.94
232 233 4.204012 CTGGGGTGAACAGTAACTCAAAA 58.796 43.478 0.00 0.00 0.00 2.44
233 234 3.815809 CTGGGGTGAACAGTAACTCAAA 58.184 45.455 0.00 0.00 0.00 2.69
234 235 2.486548 GCTGGGGTGAACAGTAACTCAA 60.487 50.000 0.00 0.00 38.22 3.02
235 236 1.071699 GCTGGGGTGAACAGTAACTCA 59.928 52.381 0.00 0.00 38.22 3.41
236 237 1.348036 AGCTGGGGTGAACAGTAACTC 59.652 52.381 0.00 0.00 38.22 3.01
237 238 1.348036 GAGCTGGGGTGAACAGTAACT 59.652 52.381 0.00 0.00 38.22 2.24
238 239 1.809684 GAGCTGGGGTGAACAGTAAC 58.190 55.000 0.00 0.00 38.22 2.50
239 240 0.320374 CGAGCTGGGGTGAACAGTAA 59.680 55.000 0.00 0.00 38.22 2.24
240 241 1.541310 CCGAGCTGGGGTGAACAGTA 61.541 60.000 6.92 0.00 38.22 2.74
241 242 2.743718 CGAGCTGGGGTGAACAGT 59.256 61.111 0.00 0.00 38.22 3.55
242 243 2.046892 CCGAGCTGGGGTGAACAG 60.047 66.667 6.92 0.00 38.95 3.16
251 252 1.522569 CTTTCTACCCCCGAGCTGG 59.477 63.158 0.00 0.00 37.55 4.85
252 253 0.976073 TCCTTTCTACCCCCGAGCTG 60.976 60.000 0.00 0.00 0.00 4.24
253 254 0.252558 TTCCTTTCTACCCCCGAGCT 60.253 55.000 0.00 0.00 0.00 4.09
254 255 0.107800 GTTCCTTTCTACCCCCGAGC 60.108 60.000 0.00 0.00 0.00 5.03
255 256 1.569653 AGTTCCTTTCTACCCCCGAG 58.430 55.000 0.00 0.00 0.00 4.63
256 257 2.034436 AAGTTCCTTTCTACCCCCGA 57.966 50.000 0.00 0.00 0.00 5.14
257 258 2.708051 GAAAGTTCCTTTCTACCCCCG 58.292 52.381 9.00 0.00 44.33 5.73
258 259 2.708051 CGAAAGTTCCTTTCTACCCCC 58.292 52.381 13.19 0.00 45.19 5.40
259 260 2.082231 GCGAAAGTTCCTTTCTACCCC 58.918 52.381 13.19 0.00 45.19 4.95
260 261 2.082231 GGCGAAAGTTCCTTTCTACCC 58.918 52.381 13.19 8.05 45.19 3.69
261 262 2.082231 GGGCGAAAGTTCCTTTCTACC 58.918 52.381 13.19 13.20 45.19 3.18
262 263 3.055209 AGGGCGAAAGTTCCTTTCTAC 57.945 47.619 13.19 6.61 45.19 2.59
263 264 3.782656 AAGGGCGAAAGTTCCTTTCTA 57.217 42.857 13.19 0.00 45.19 2.10
264 265 2.658807 AAGGGCGAAAGTTCCTTTCT 57.341 45.000 13.19 0.00 45.19 2.52
267 268 2.623416 CTCAAAAGGGCGAAAGTTCCTT 59.377 45.455 0.00 0.00 44.43 3.36
268 269 2.230660 CTCAAAAGGGCGAAAGTTCCT 58.769 47.619 0.00 0.00 38.23 3.36
269 270 1.269723 CCTCAAAAGGGCGAAAGTTCC 59.730 52.381 0.00 0.00 39.21 3.62
270 271 2.706555 CCTCAAAAGGGCGAAAGTTC 57.293 50.000 0.00 0.00 39.21 3.01
281 282 9.403110 CTTGTTCTTGATTATTGACCTCAAAAG 57.597 33.333 0.00 0.00 39.55 2.27
282 283 8.359642 CCTTGTTCTTGATTATTGACCTCAAAA 58.640 33.333 0.00 0.00 39.55 2.44
283 284 7.505585 ACCTTGTTCTTGATTATTGACCTCAAA 59.494 33.333 0.00 0.00 39.55 2.69
284 285 7.004086 ACCTTGTTCTTGATTATTGACCTCAA 58.996 34.615 0.00 0.00 40.51 3.02
285 286 6.542821 ACCTTGTTCTTGATTATTGACCTCA 58.457 36.000 0.00 0.00 0.00 3.86
286 287 7.201530 CGTACCTTGTTCTTGATTATTGACCTC 60.202 40.741 0.00 0.00 0.00 3.85
287 288 6.594159 CGTACCTTGTTCTTGATTATTGACCT 59.406 38.462 0.00 0.00 0.00 3.85
288 289 6.183360 CCGTACCTTGTTCTTGATTATTGACC 60.183 42.308 0.00 0.00 0.00 4.02
289 290 6.370718 ACCGTACCTTGTTCTTGATTATTGAC 59.629 38.462 0.00 0.00 0.00 3.18
290 291 6.370442 CACCGTACCTTGTTCTTGATTATTGA 59.630 38.462 0.00 0.00 0.00 2.57
291 292 6.403200 CCACCGTACCTTGTTCTTGATTATTG 60.403 42.308 0.00 0.00 0.00 1.90
292 293 5.646360 CCACCGTACCTTGTTCTTGATTATT 59.354 40.000 0.00 0.00 0.00 1.40
293 294 5.046159 TCCACCGTACCTTGTTCTTGATTAT 60.046 40.000 0.00 0.00 0.00 1.28
294 295 4.283978 TCCACCGTACCTTGTTCTTGATTA 59.716 41.667 0.00 0.00 0.00 1.75
295 296 3.071892 TCCACCGTACCTTGTTCTTGATT 59.928 43.478 0.00 0.00 0.00 2.57
296 297 2.635915 TCCACCGTACCTTGTTCTTGAT 59.364 45.455 0.00 0.00 0.00 2.57
297 298 2.036733 CTCCACCGTACCTTGTTCTTGA 59.963 50.000 0.00 0.00 0.00 3.02
298 299 2.413837 CTCCACCGTACCTTGTTCTTG 58.586 52.381 0.00 0.00 0.00 3.02
299 300 1.270678 GCTCCACCGTACCTTGTTCTT 60.271 52.381 0.00 0.00 0.00 2.52
300 301 0.320697 GCTCCACCGTACCTTGTTCT 59.679 55.000 0.00 0.00 0.00 3.01
301 302 0.034337 TGCTCCACCGTACCTTGTTC 59.966 55.000 0.00 0.00 0.00 3.18
302 303 0.034896 CTGCTCCACCGTACCTTGTT 59.965 55.000 0.00 0.00 0.00 2.83
303 304 1.671742 CTGCTCCACCGTACCTTGT 59.328 57.895 0.00 0.00 0.00 3.16
304 305 1.079127 CCTGCTCCACCGTACCTTG 60.079 63.158 0.00 0.00 0.00 3.61
305 306 2.955881 GCCTGCTCCACCGTACCTT 61.956 63.158 0.00 0.00 0.00 3.50
306 307 3.391382 GCCTGCTCCACCGTACCT 61.391 66.667 0.00 0.00 0.00 3.08
307 308 3.031417 ATGCCTGCTCCACCGTACC 62.031 63.158 0.00 0.00 0.00 3.34
308 309 1.815421 CATGCCTGCTCCACCGTAC 60.815 63.158 0.00 0.00 0.00 3.67
309 310 2.290287 ACATGCCTGCTCCACCGTA 61.290 57.895 0.00 0.00 0.00 4.02
310 311 3.640407 ACATGCCTGCTCCACCGT 61.640 61.111 0.00 0.00 0.00 4.83
311 312 3.129502 CACATGCCTGCTCCACCG 61.130 66.667 0.00 0.00 0.00 4.94
312 313 0.895100 TTTCACATGCCTGCTCCACC 60.895 55.000 0.00 0.00 0.00 4.61
313 314 0.524862 CTTTCACATGCCTGCTCCAC 59.475 55.000 0.00 0.00 0.00 4.02
314 315 0.609957 CCTTTCACATGCCTGCTCCA 60.610 55.000 0.00 0.00 0.00 3.86
315 316 0.610232 ACCTTTCACATGCCTGCTCC 60.610 55.000 0.00 0.00 0.00 4.70
316 317 0.524862 CACCTTTCACATGCCTGCTC 59.475 55.000 0.00 0.00 0.00 4.26
317 318 1.530013 GCACCTTTCACATGCCTGCT 61.530 55.000 0.00 0.00 33.06 4.24
322 323 0.447801 CTACGGCACCTTTCACATGC 59.552 55.000 0.00 0.00 38.68 4.06
408 723 2.278661 GCGCGGTGTAGGAGTAGC 60.279 66.667 8.83 0.00 0.00 3.58
462 777 5.010012 GGGGATTTGAATGCGAATATCAACT 59.990 40.000 0.00 0.00 33.13 3.16
464 779 4.023279 CGGGGATTTGAATGCGAATATCAA 60.023 41.667 0.00 0.00 0.00 2.57
646 965 1.239296 ACTACGACGTGGCTGCTGTA 61.239 55.000 11.56 0.00 0.00 2.74
688 1007 4.529219 TATGGGTCGCGCTGGCTG 62.529 66.667 5.56 0.00 36.88 4.85
921 1242 0.179150 CGCGAGAAAGTGAGAGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
930 1251 3.314339 CGAGATGTCGCGAGAAAGT 57.686 52.632 10.24 0.00 45.01 2.66
952 1273 0.331278 TGAAATGGGGTGGCGATCTT 59.669 50.000 0.00 0.00 0.00 2.40
953 1274 0.331278 TTGAAATGGGGTGGCGATCT 59.669 50.000 0.00 0.00 0.00 2.75
975 1296 2.218603 GCGAAACCTTCTCCTGTGAAA 58.781 47.619 0.00 0.00 0.00 2.69
976 1297 1.872237 CGCGAAACCTTCTCCTGTGAA 60.872 52.381 0.00 0.00 0.00 3.18
977 1298 0.319555 CGCGAAACCTTCTCCTGTGA 60.320 55.000 0.00 0.00 0.00 3.58
978 1299 1.291877 CCGCGAAACCTTCTCCTGTG 61.292 60.000 8.23 0.00 0.00 3.66
979 1300 1.004918 CCGCGAAACCTTCTCCTGT 60.005 57.895 8.23 0.00 0.00 4.00
980 1301 0.737715 CTCCGCGAAACCTTCTCCTG 60.738 60.000 8.23 0.00 0.00 3.86
983 1304 1.281899 CATCTCCGCGAAACCTTCTC 58.718 55.000 8.23 0.00 0.00 2.87
984 1305 0.741221 GCATCTCCGCGAAACCTTCT 60.741 55.000 8.23 0.00 0.00 2.85
985 1306 0.741221 AGCATCTCCGCGAAACCTTC 60.741 55.000 8.23 0.00 36.85 3.46
986 1307 1.021390 CAGCATCTCCGCGAAACCTT 61.021 55.000 8.23 0.00 36.85 3.50
987 1308 1.448540 CAGCATCTCCGCGAAACCT 60.449 57.895 8.23 0.00 36.85 3.50
988 1309 1.424493 CTCAGCATCTCCGCGAAACC 61.424 60.000 8.23 0.00 36.85 3.27
989 1310 2.002127 CTCAGCATCTCCGCGAAAC 58.998 57.895 8.23 0.00 36.85 2.78
990 1311 1.811266 GCTCAGCATCTCCGCGAAA 60.811 57.895 8.23 0.00 36.85 3.46
991 1312 2.202797 GCTCAGCATCTCCGCGAA 60.203 61.111 8.23 0.00 36.85 4.70
992 1313 4.559229 CGCTCAGCATCTCCGCGA 62.559 66.667 8.23 0.00 45.99 5.87
995 1316 4.218578 AGCCGCTCAGCATCTCCG 62.219 66.667 0.00 0.00 34.23 4.63
996 1317 2.280052 GAGCCGCTCAGCATCTCC 60.280 66.667 15.78 0.00 34.23 3.71
1044 1365 2.125673 CCTACGGCCAAGGTCACG 60.126 66.667 12.24 0.00 0.00 4.35
1045 1366 2.267961 CCCTACGGCCAAGGTCAC 59.732 66.667 17.74 0.00 31.70 3.67
1322 1643 0.957395 AAATGCAGTCGACCAGCAGG 60.957 55.000 29.18 9.26 42.14 4.85
1357 1678 2.349755 GCCGGTTAACTGGGCAGA 59.650 61.111 30.37 0.00 46.13 4.26
1406 1732 3.197766 TGAACTCTGAACAGTGTCAACCT 59.802 43.478 9.41 0.00 34.45 3.50
1407 1733 3.531538 TGAACTCTGAACAGTGTCAACC 58.468 45.455 9.41 2.57 34.45 3.77
1412 1738 4.184629 GTTGTCTGAACTCTGAACAGTGT 58.815 43.478 4.08 4.08 36.80 3.55
1413 1739 4.033358 GTGTTGTCTGAACTCTGAACAGTG 59.967 45.833 1.73 2.37 33.93 3.66
1433 1759 0.191563 TGTGGGTACTGGGTAGGTGT 59.808 55.000 0.00 0.00 0.00 4.16
1435 1761 0.901580 CGTGTGGGTACTGGGTAGGT 60.902 60.000 0.00 0.00 0.00 3.08
1437 1763 0.815734 CTCGTGTGGGTACTGGGTAG 59.184 60.000 0.00 0.00 0.00 3.18
1438 1764 0.112995 ACTCGTGTGGGTACTGGGTA 59.887 55.000 0.00 0.00 0.00 3.69
1439 1765 0.761702 AACTCGTGTGGGTACTGGGT 60.762 55.000 0.00 0.00 0.00 4.51
1440 1766 0.037605 GAACTCGTGTGGGTACTGGG 60.038 60.000 0.00 0.00 0.00 4.45
1474 1800 8.292448 TGCTTTCTGAATCAAAAATCACTCTAC 58.708 33.333 0.00 0.00 0.00 2.59
1483 1809 5.415221 ACCGTTTGCTTTCTGAATCAAAAA 58.585 33.333 15.27 3.28 33.97 1.94
1522 1848 7.710475 ACCAACAAGACATTTTTCACCTTAATG 59.290 33.333 0.00 0.00 35.82 1.90
1563 1891 3.181503 GGACTACGTTAATGTGCTCGAGA 60.182 47.826 18.75 0.00 0.00 4.04
1566 1894 2.190981 GGGACTACGTTAATGTGCTCG 58.809 52.381 10.68 0.00 0.00 5.03
1567 1895 2.547826 GGGGACTACGTTAATGTGCTC 58.452 52.381 10.68 4.59 0.00 4.26
1568 1896 1.134907 CGGGGACTACGTTAATGTGCT 60.135 52.381 10.68 0.00 0.00 4.40
1569 1897 1.283736 CGGGGACTACGTTAATGTGC 58.716 55.000 10.68 0.25 0.00 4.57
1570 1898 1.477700 TCCGGGGACTACGTTAATGTG 59.522 52.381 10.68 3.55 0.00 3.21
1571 1899 1.753073 CTCCGGGGACTACGTTAATGT 59.247 52.381 0.00 5.50 0.00 2.71
1572 1900 1.068127 CCTCCGGGGACTACGTTAATG 59.932 57.143 0.37 0.00 37.23 1.90
1573 1901 1.063717 TCCTCCGGGGACTACGTTAAT 60.064 52.381 0.37 0.00 39.58 1.40
1574 1902 0.331278 TCCTCCGGGGACTACGTTAA 59.669 55.000 0.37 0.00 39.58 2.01
1637 1989 9.210426 CATTTATGCGTCAACTAGTACAAAATC 57.790 33.333 0.00 0.00 0.00 2.17
1641 1993 6.647481 ACACATTTATGCGTCAACTAGTACAA 59.353 34.615 0.00 0.00 0.00 2.41
1645 1997 6.872020 ACTAACACATTTATGCGTCAACTAGT 59.128 34.615 0.00 0.00 0.00 2.57
1648 2000 7.661127 TTACTAACACATTTATGCGTCAACT 57.339 32.000 0.00 0.00 0.00 3.16
1679 2031 7.533561 CGTTCATTGCAAAAACCCAATTTAATC 59.466 33.333 17.52 0.00 29.71 1.75
1704 2056 0.321298 CTGGTACAACTTCACCCCCG 60.321 60.000 0.00 0.00 38.70 5.73
1705 2057 0.769247 ACTGGTACAACTTCACCCCC 59.231 55.000 0.00 0.00 38.70 5.40
1710 2062 2.701423 TGGTGCTACTGGTACAACTTCA 59.299 45.455 0.00 0.00 38.70 3.02
1716 2073 2.003937 TCTGTGGTGCTACTGGTACA 57.996 50.000 0.00 0.00 32.05 2.90
1728 2085 7.548097 CACAATAAGTGTAGTAGATCTGTGGT 58.452 38.462 5.18 0.00 43.40 4.16
1729 2088 7.993821 CACAATAAGTGTAGTAGATCTGTGG 57.006 40.000 5.18 0.00 43.40 4.17
1747 2106 9.902196 CGTATCCTTATGTACATACACACAATA 57.098 33.333 15.20 5.57 39.30 1.90
1775 2152 6.925165 TCACCTCAAAAGAAAATGAAATGCTC 59.075 34.615 0.00 0.00 0.00 4.26
1807 2210 0.108472 CTGCAAGGACGATGCTCTCA 60.108 55.000 0.00 0.00 44.14 3.27
1822 2225 3.694043 TTAAGCCACTGTACATCTGCA 57.306 42.857 0.00 0.00 0.00 4.41
1823 2226 6.316390 ACTTAATTAAGCCACTGTACATCTGC 59.684 38.462 22.45 0.00 36.79 4.26
1825 2228 7.620880 TGACTTAATTAAGCCACTGTACATCT 58.379 34.615 22.45 1.09 36.79 2.90
1862 2280 3.799137 GTTCGCCATGAACGTTTCTTA 57.201 42.857 0.46 0.00 46.85 2.10
1878 2331 3.723554 GACAGACCTGGCTAGTTCG 57.276 57.895 0.00 0.00 35.21 3.95
1911 2364 1.823610 GGTGTCTAGTCGGCCTTAGTT 59.176 52.381 0.00 0.00 0.00 2.24
1918 2371 0.103208 CCAGATGGTGTCTAGTCGGC 59.897 60.000 0.00 0.00 34.69 5.54
1981 2443 8.087750 TCAAAACGGCAGAATAATTTCAGATTT 58.912 29.630 0.00 0.00 34.08 2.17
2055 2517 1.801178 CGTCTGAGAAAAACCTGGCTC 59.199 52.381 0.00 0.00 0.00 4.70
2079 2565 0.766131 TTAGTCGGCCTTGGTGGAAA 59.234 50.000 0.00 0.00 38.35 3.13
2086 2572 1.737793 GATGGTGTTTAGTCGGCCTTG 59.262 52.381 0.00 0.00 0.00 3.61
2141 2631 3.119459 TCTGTCGCCTGAAGAATACAGAC 60.119 47.826 0.00 0.00 38.64 3.51
2194 2684 2.288213 CGTGGACGCCATGACTACATAT 60.288 50.000 11.32 0.00 42.73 1.78
2195 2685 1.066454 CGTGGACGCCATGACTACATA 59.934 52.381 11.32 0.00 42.73 2.29
2196 2686 0.179111 CGTGGACGCCATGACTACAT 60.179 55.000 11.32 0.00 42.73 2.29
2208 2699 5.062934 TGCAGATAAGATTTAAACGTGGACG 59.937 40.000 0.00 0.00 46.33 4.79
2444 2945 0.032515 TGAGCGGGTTCCAGAGGATA 60.033 55.000 0.00 0.00 0.00 2.59
2475 2976 0.107459 GTGCTGTGGAGAAGGGATCC 60.107 60.000 1.92 1.92 37.35 3.36
2480 2981 0.742281 CGATGGTGCTGTGGAGAAGG 60.742 60.000 0.00 0.00 0.00 3.46
2509 3010 4.405358 AGAACTCAGGATGGAGAGATGAAC 59.595 45.833 0.00 0.00 38.30 3.18
2511 3012 4.079269 AGAGAACTCAGGATGGAGAGATGA 60.079 45.833 4.64 0.00 38.30 2.92
2526 3027 4.567558 CAGCAAGATCATGTCAGAGAACTC 59.432 45.833 0.00 0.00 0.00 3.01
2527 3028 4.222366 TCAGCAAGATCATGTCAGAGAACT 59.778 41.667 0.00 0.00 0.00 3.01
2528 3029 4.502016 TCAGCAAGATCATGTCAGAGAAC 58.498 43.478 0.00 0.00 0.00 3.01
2529 3030 4.813750 TCAGCAAGATCATGTCAGAGAA 57.186 40.909 0.00 0.00 0.00 2.87
2532 3033 5.093849 TCAATCAGCAAGATCATGTCAGA 57.906 39.130 0.00 0.00 35.39 3.27
2533 3034 6.183360 ACAATCAATCAGCAAGATCATGTCAG 60.183 38.462 0.00 0.00 35.39 3.51
2535 3036 5.971792 CACAATCAATCAGCAAGATCATGTC 59.028 40.000 0.00 0.00 35.39 3.06
2536 3037 5.163550 CCACAATCAATCAGCAAGATCATGT 60.164 40.000 0.00 0.00 35.39 3.21
2547 3055 5.179368 ACTGTAACGAACCACAATCAATCAG 59.821 40.000 0.00 0.00 0.00 2.90
2558 3066 4.614306 CGATGTACAGACTGTAACGAACCA 60.614 45.833 16.84 9.89 34.21 3.67
2559 3067 3.850273 CGATGTACAGACTGTAACGAACC 59.150 47.826 16.84 4.50 34.21 3.62
2560 3068 4.552660 GTCGATGTACAGACTGTAACGAAC 59.447 45.833 26.67 20.51 37.14 3.95
2561 3069 4.667415 CGTCGATGTACAGACTGTAACGAA 60.667 45.833 26.67 16.32 35.37 3.85
2562 3070 3.181527 CGTCGATGTACAGACTGTAACGA 60.182 47.826 23.17 23.54 35.37 3.85
2563 3071 3.089267 CGTCGATGTACAGACTGTAACG 58.911 50.000 16.84 17.28 34.21 3.18
2564 3072 3.423571 CCGTCGATGTACAGACTGTAAC 58.576 50.000 16.84 10.07 34.21 2.50
2565 3073 2.421073 CCCGTCGATGTACAGACTGTAA 59.579 50.000 16.84 8.16 34.21 2.41
2566 3074 2.011947 CCCGTCGATGTACAGACTGTA 58.988 52.381 11.37 11.37 35.38 2.74
2567 3075 0.809385 CCCGTCGATGTACAGACTGT 59.191 55.000 13.68 13.68 35.38 3.55
2571 3079 1.985447 GCGTCCCGTCGATGTACAGA 61.985 60.000 0.33 0.00 0.00 3.41
2999 3512 1.401552 ACGCATGAACGAATTGATGGG 59.598 47.619 0.00 0.00 44.48 4.00
3023 3536 2.134346 CGTACTCTCTCTACCGCCTAC 58.866 57.143 0.00 0.00 0.00 3.18
3081 3599 5.072741 TGAAGCTCTTTTAATTCTGCTGGT 58.927 37.500 0.00 0.00 0.00 4.00
3092 3610 5.234329 CACAGACGAAACTGAAGCTCTTTTA 59.766 40.000 13.55 0.00 40.63 1.52
3093 3611 4.034510 CACAGACGAAACTGAAGCTCTTTT 59.965 41.667 13.55 0.00 40.63 2.27
3102 3620 4.004314 TGTTTTTCCACAGACGAAACTGA 58.996 39.130 13.55 0.00 40.63 3.41
3103 3621 4.349663 TGTTTTTCCACAGACGAAACTG 57.650 40.909 0.00 0.00 42.78 3.16
3104 3622 4.638421 TCATGTTTTTCCACAGACGAAACT 59.362 37.500 0.00 0.00 32.97 2.66
3105 3623 4.915704 TCATGTTTTTCCACAGACGAAAC 58.084 39.130 0.00 0.00 32.65 2.78
3106 3624 5.559991 CGATCATGTTTTTCCACAGACGAAA 60.560 40.000 0.00 0.00 0.00 3.46
3107 3625 4.084066 CGATCATGTTTTTCCACAGACGAA 60.084 41.667 0.00 0.00 0.00 3.85
3108 3626 3.431912 CGATCATGTTTTTCCACAGACGA 59.568 43.478 0.00 0.00 0.00 4.20
3109 3627 3.424829 CCGATCATGTTTTTCCACAGACG 60.425 47.826 0.00 0.00 0.00 4.18
3110 3628 3.751175 TCCGATCATGTTTTTCCACAGAC 59.249 43.478 0.00 0.00 0.00 3.51
3133 3651 4.024048 ACAAGAAACTGCGACCTACAATTG 60.024 41.667 3.24 3.24 0.00 2.32
3162 3680 0.758685 CAAAGGGGGCAAACACAGGA 60.759 55.000 0.00 0.00 0.00 3.86
3167 3685 0.915364 AAAAGCAAAGGGGGCAAACA 59.085 45.000 0.00 0.00 0.00 2.83
3207 3725 1.516169 GCATTTTTGGTAGCCGCCG 60.516 57.895 0.00 0.00 0.00 6.46
3208 3726 1.099689 TAGCATTTTTGGTAGCCGCC 58.900 50.000 0.00 0.00 0.00 6.13
3209 3727 1.470890 TGTAGCATTTTTGGTAGCCGC 59.529 47.619 0.00 0.00 0.00 6.53
3210 3728 2.747446 AGTGTAGCATTTTTGGTAGCCG 59.253 45.455 0.00 0.00 0.00 5.52
3211 3729 5.637809 GTTAGTGTAGCATTTTTGGTAGCC 58.362 41.667 0.00 0.00 0.00 3.93
3212 3730 5.321516 CGTTAGTGTAGCATTTTTGGTAGC 58.678 41.667 0.00 0.00 0.00 3.58
3213 3731 5.640357 TCCGTTAGTGTAGCATTTTTGGTAG 59.360 40.000 0.00 0.00 0.00 3.18
3214 3732 5.549347 TCCGTTAGTGTAGCATTTTTGGTA 58.451 37.500 0.00 0.00 0.00 3.25
3215 3733 4.391155 TCCGTTAGTGTAGCATTTTTGGT 58.609 39.130 0.00 0.00 0.00 3.67
3216 3734 5.365403 TTCCGTTAGTGTAGCATTTTTGG 57.635 39.130 0.00 0.00 0.00 3.28
3217 3735 4.851558 GCTTCCGTTAGTGTAGCATTTTTG 59.148 41.667 0.00 0.00 0.00 2.44
3218 3736 4.760204 AGCTTCCGTTAGTGTAGCATTTTT 59.240 37.500 0.00 0.00 34.37 1.94
3219 3737 4.324267 AGCTTCCGTTAGTGTAGCATTTT 58.676 39.130 0.00 0.00 34.37 1.82
3220 3738 3.939066 AGCTTCCGTTAGTGTAGCATTT 58.061 40.909 0.00 0.00 34.37 2.32
3221 3739 3.611766 AGCTTCCGTTAGTGTAGCATT 57.388 42.857 0.00 0.00 34.37 3.56
3222 3740 3.611766 AAGCTTCCGTTAGTGTAGCAT 57.388 42.857 0.00 0.00 34.37 3.79
3223 3741 3.006537 AGAAAGCTTCCGTTAGTGTAGCA 59.993 43.478 0.00 0.00 34.37 3.49
3224 3742 3.586892 AGAAAGCTTCCGTTAGTGTAGC 58.413 45.455 0.00 0.00 0.00 3.58
3225 3743 5.706916 TGTAGAAAGCTTCCGTTAGTGTAG 58.293 41.667 0.00 0.00 0.00 2.74
3226 3744 5.474532 TCTGTAGAAAGCTTCCGTTAGTGTA 59.525 40.000 0.00 0.00 0.00 2.90
3227 3745 4.280174 TCTGTAGAAAGCTTCCGTTAGTGT 59.720 41.667 0.00 0.00 0.00 3.55
3228 3746 4.806330 TCTGTAGAAAGCTTCCGTTAGTG 58.194 43.478 0.00 0.00 0.00 2.74
3229 3747 5.662674 ATCTGTAGAAAGCTTCCGTTAGT 57.337 39.130 0.00 0.00 0.00 2.24
3230 3748 5.869888 ACAATCTGTAGAAAGCTTCCGTTAG 59.130 40.000 0.00 0.00 0.00 2.34
3231 3749 5.790593 ACAATCTGTAGAAAGCTTCCGTTA 58.209 37.500 0.00 0.00 0.00 3.18
3232 3750 4.642429 ACAATCTGTAGAAAGCTTCCGTT 58.358 39.130 0.00 0.00 0.00 4.44
3233 3751 4.273148 ACAATCTGTAGAAAGCTTCCGT 57.727 40.909 0.00 0.00 0.00 4.69
3234 3752 5.613358 AAACAATCTGTAGAAAGCTTCCG 57.387 39.130 0.00 0.00 0.00 4.30
3235 3753 6.858478 GTGAAAACAATCTGTAGAAAGCTTCC 59.142 38.462 0.00 0.00 0.00 3.46
3236 3754 6.575201 CGTGAAAACAATCTGTAGAAAGCTTC 59.425 38.462 0.00 0.00 0.00 3.86
3237 3755 6.430451 CGTGAAAACAATCTGTAGAAAGCTT 58.570 36.000 0.00 0.00 0.00 3.74
3238 3756 5.049405 CCGTGAAAACAATCTGTAGAAAGCT 60.049 40.000 0.00 0.00 0.00 3.74
3239 3757 5.049680 TCCGTGAAAACAATCTGTAGAAAGC 60.050 40.000 0.00 0.00 0.00 3.51
3240 3758 6.363473 GTCCGTGAAAACAATCTGTAGAAAG 58.637 40.000 0.00 0.00 0.00 2.62
3241 3759 5.050634 CGTCCGTGAAAACAATCTGTAGAAA 60.051 40.000 0.00 0.00 0.00 2.52
3242 3760 4.446385 CGTCCGTGAAAACAATCTGTAGAA 59.554 41.667 0.00 0.00 0.00 2.10
3243 3761 3.985279 CGTCCGTGAAAACAATCTGTAGA 59.015 43.478 0.00 0.00 0.00 2.59
3244 3762 3.985279 TCGTCCGTGAAAACAATCTGTAG 59.015 43.478 0.00 0.00 0.00 2.74
3245 3763 3.737266 GTCGTCCGTGAAAACAATCTGTA 59.263 43.478 0.00 0.00 0.00 2.74
3246 3764 2.542595 GTCGTCCGTGAAAACAATCTGT 59.457 45.455 0.00 0.00 0.00 3.41
3247 3765 2.409752 CGTCGTCCGTGAAAACAATCTG 60.410 50.000 0.00 0.00 0.00 2.90
3248 3766 1.790623 CGTCGTCCGTGAAAACAATCT 59.209 47.619 0.00 0.00 0.00 2.40
3249 3767 1.720547 GCGTCGTCCGTGAAAACAATC 60.721 52.381 0.00 0.00 39.32 2.67
3250 3768 0.233848 GCGTCGTCCGTGAAAACAAT 59.766 50.000 0.00 0.00 39.32 2.71
3251 3769 0.806884 AGCGTCGTCCGTGAAAACAA 60.807 50.000 0.00 0.00 39.32 2.83
3252 3770 0.806884 AAGCGTCGTCCGTGAAAACA 60.807 50.000 0.00 0.00 39.32 2.83
3253 3771 0.111398 GAAGCGTCGTCCGTGAAAAC 60.111 55.000 0.00 0.00 39.32 2.43
3254 3772 0.528033 TGAAGCGTCGTCCGTGAAAA 60.528 50.000 0.00 0.00 39.32 2.29
3255 3773 0.937699 CTGAAGCGTCGTCCGTGAAA 60.938 55.000 0.00 0.00 39.32 2.69
3256 3774 1.371267 CTGAAGCGTCGTCCGTGAA 60.371 57.895 0.00 0.00 39.32 3.18
3257 3775 2.254350 CTGAAGCGTCGTCCGTGA 59.746 61.111 0.00 0.00 39.32 4.35
3258 3776 2.050351 ACTGAAGCGTCGTCCGTG 60.050 61.111 0.00 0.00 39.32 4.94
3259 3777 2.254651 GACTGAAGCGTCGTCCGT 59.745 61.111 11.39 0.00 39.32 4.69
3260 3778 2.504244 GGACTGAAGCGTCGTCCG 60.504 66.667 20.59 3.21 37.55 4.79
3261 3779 1.915614 TACGGACTGAAGCGTCGTCC 61.916 60.000 23.23 23.23 40.80 4.79
3262 3780 0.110056 TTACGGACTGAAGCGTCGTC 60.110 55.000 13.18 13.18 34.75 4.20
3263 3781 0.109873 CTTACGGACTGAAGCGTCGT 60.110 55.000 0.00 0.00 34.75 4.34
3264 3782 0.167470 TCTTACGGACTGAAGCGTCG 59.833 55.000 0.00 0.00 34.75 5.12
3265 3783 1.897641 CTCTTACGGACTGAAGCGTC 58.102 55.000 0.00 0.00 0.00 5.19
3266 3784 0.109226 GCTCTTACGGACTGAAGCGT 60.109 55.000 0.00 0.00 0.00 5.07
3267 3785 0.109272 TGCTCTTACGGACTGAAGCG 60.109 55.000 0.00 0.00 0.00 4.68
3268 3786 1.727335 GTTGCTCTTACGGACTGAAGC 59.273 52.381 0.00 0.00 0.00 3.86
3269 3787 3.246619 GAGTTGCTCTTACGGACTGAAG 58.753 50.000 0.00 0.00 0.00 3.02
3270 3788 2.029290 GGAGTTGCTCTTACGGACTGAA 60.029 50.000 0.00 0.00 0.00 3.02
3271 3789 1.544691 GGAGTTGCTCTTACGGACTGA 59.455 52.381 0.00 0.00 0.00 3.41
3272 3790 1.272490 TGGAGTTGCTCTTACGGACTG 59.728 52.381 0.00 0.00 0.00 3.51
3273 3791 1.629043 TGGAGTTGCTCTTACGGACT 58.371 50.000 0.00 0.00 0.00 3.85
3274 3792 2.067013 GTTGGAGTTGCTCTTACGGAC 58.933 52.381 0.00 0.00 0.00 4.79
3275 3793 1.336517 CGTTGGAGTTGCTCTTACGGA 60.337 52.381 12.22 0.00 35.45 4.69
3276 3794 1.068474 CGTTGGAGTTGCTCTTACGG 58.932 55.000 12.22 0.00 35.45 4.02
3366 3890 4.735369 TGCCAACCAAATCTTAAAGAGGA 58.265 39.130 0.00 0.00 0.00 3.71
3414 3939 5.163302 TCAAAATTTACGTGCGGATATGG 57.837 39.130 0.00 0.00 0.00 2.74
3445 3970 3.552068 CGTTGGCATGATCTATGACCGTA 60.552 47.826 0.00 1.66 44.74 4.02
3513 4040 3.443045 CCGGTGTTGGCATGGAGC 61.443 66.667 0.00 0.00 44.65 4.70
3622 4156 4.744316 GACGGTGTGGTCGAACTT 57.256 55.556 0.33 0.00 0.00 2.66
3722 4259 1.815421 GATGCGGTCCGACATGCTT 60.815 57.895 17.49 9.05 0.00 3.91
3733 4270 0.389948 GTGGTTCGAGAAGATGCGGT 60.390 55.000 0.00 0.00 0.00 5.68
3804 4341 3.375299 GCTCTTGCTAAAATGATGACGGT 59.625 43.478 0.00 0.00 36.03 4.83
3815 4353 4.615912 GCGAAAGAAATGGCTCTTGCTAAA 60.616 41.667 0.00 0.00 35.79 1.85
3816 4354 3.119849 GCGAAAGAAATGGCTCTTGCTAA 60.120 43.478 0.00 0.00 35.79 3.09
3829 4367 2.228822 GCCAAGATCAAGGCGAAAGAAA 59.771 45.455 11.97 0.00 41.70 2.52
3861 4399 4.272991 GCAAGCCAAGATGTTAGAGATCAG 59.727 45.833 0.00 0.00 0.00 2.90
3963 4501 4.036380 GGACAAGGAAGAACAAATGAACGT 59.964 41.667 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.