Multiple sequence alignment - TraesCS7D01G419100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G419100 chr7D 100.000 3041 0 0 1 3041 538593794 538596834 0.000000e+00 5616.0
1 TraesCS7D01G419100 chr7D 86.857 1750 133 39 550 2237 538602210 538603924 0.000000e+00 1868.0
2 TraesCS7D01G419100 chr7D 88.064 1617 131 34 475 2044 538661554 538663155 0.000000e+00 1860.0
3 TraesCS7D01G419100 chr7D 88.305 1351 92 32 734 2044 538141086 538139762 0.000000e+00 1559.0
4 TraesCS7D01G419100 chr7D 87.166 374 25 14 586 938 538353832 538353461 1.310000e-108 403.0
5 TraesCS7D01G419100 chr7D 85.802 324 29 9 2359 2666 538604795 538605117 8.130000e-86 327.0
6 TraesCS7D01G419100 chr7D 99.346 153 1 0 2501 2653 538587598 538587750 8.300000e-71 278.0
7 TraesCS7D01G419100 chr7D 82.292 288 30 10 820 1092 538333437 538333156 2.360000e-56 230.0
8 TraesCS7D01G419100 chr7D 92.073 164 12 1 3 166 538642202 538642364 2.360000e-56 230.0
9 TraesCS7D01G419100 chr7D 87.195 164 17 3 229 390 538660720 538660881 1.860000e-42 183.0
10 TraesCS7D01G419100 chr7D 90.476 84 6 2 275 358 538601186 538601267 3.210000e-20 110.0
11 TraesCS7D01G419100 chr7D 84.071 113 10 4 2054 2166 538332152 538332048 5.360000e-18 102.0
12 TraesCS7D01G419100 chr7D 98.077 52 1 0 2378 2429 538587495 538587546 1.160000e-14 91.6
13 TraesCS7D01G419100 chr7A 83.670 1880 160 56 244 2045 620200757 620202567 0.000000e+00 1635.0
14 TraesCS7D01G419100 chr7A 88.307 1317 100 23 752 2044 619167199 619165913 0.000000e+00 1530.0
15 TraesCS7D01G419100 chr7A 87.952 1328 101 35 752 2044 619576912 619575609 0.000000e+00 1511.0
16 TraesCS7D01G419100 chr7A 86.891 1396 111 40 757 2119 619906911 619908267 0.000000e+00 1498.0
17 TraesCS7D01G419100 chr7A 85.263 1330 117 44 757 2044 619634287 619632995 0.000000e+00 1297.0
18 TraesCS7D01G419100 chr7A 86.182 825 56 21 757 1557 620171357 620172147 0.000000e+00 839.0
19 TraesCS7D01G419100 chr7A 95.529 425 19 0 1620 2044 620172243 620172667 0.000000e+00 680.0
20 TraesCS7D01G419100 chr7A 90.289 484 44 2 1616 2097 620188086 620188568 5.530000e-177 630.0
21 TraesCS7D01G419100 chr7A 93.467 199 13 0 2093 2291 620196787 620196985 2.290000e-76 296.0
22 TraesCS7D01G419100 chr7A 93.000 200 5 1 2469 2659 619908471 619908670 1.780000e-72 283.0
23 TraesCS7D01G419100 chr7A 96.667 120 4 0 2439 2558 620197821 620197940 1.850000e-47 200.0
24 TraesCS7D01G419100 chr7A 95.745 94 2 2 2333 2425 619908380 619908472 1.890000e-32 150.0
25 TraesCS7D01G419100 chr7A 86.885 122 11 4 2155 2276 619908269 619908385 6.840000e-27 132.0
26 TraesCS7D01G419100 chr7A 79.221 154 28 3 85 237 620200552 620200702 1.490000e-18 104.0
27 TraesCS7D01G419100 chr7A 85.714 70 10 0 2317 2386 620197718 620197787 1.170000e-09 75.0
28 TraesCS7D01G419100 chr7B 88.521 1359 87 37 229 1562 581332686 581334000 0.000000e+00 1581.0
29 TraesCS7D01G419100 chr7B 86.953 1349 106 27 734 2046 580885919 580884605 0.000000e+00 1452.0
30 TraesCS7D01G419100 chr7B 84.693 1385 135 48 728 2080 581313530 581314869 0.000000e+00 1312.0
31 TraesCS7D01G419100 chr7B 83.544 1501 138 54 821 2230 580970489 580969007 0.000000e+00 1303.0
32 TraesCS7D01G419100 chr7B 94.805 462 24 0 1583 2044 581334051 581334512 0.000000e+00 721.0
33 TraesCS7D01G419100 chr7B 88.538 253 19 6 1 247 581332410 581332658 6.370000e-77 298.0
34 TraesCS7D01G419100 chr7B 90.308 227 12 6 2449 2666 581315130 581315355 3.840000e-74 289.0
35 TraesCS7D01G419100 chr7B 83.959 293 24 6 606 893 581326113 581326387 3.010000e-65 259.0
36 TraesCS7D01G419100 chr1D 86.508 378 44 7 2668 3041 468701518 468701144 2.820000e-110 409.0
37 TraesCS7D01G419100 chr3A 86.316 380 43 8 2667 3041 349737431 349737806 3.650000e-109 405.0
38 TraesCS7D01G419100 chr6D 86.757 370 40 9 2667 3033 451330698 451331061 1.310000e-108 403.0
39 TraesCS7D01G419100 chr2D 86.059 373 42 10 2667 3034 118131686 118132053 2.840000e-105 392.0
40 TraesCS7D01G419100 chr1B 87.356 348 33 11 2667 3006 687690400 687690744 3.680000e-104 388.0
41 TraesCS7D01G419100 chr1B 85.676 370 43 8 2667 3033 599204157 599204519 6.150000e-102 381.0
42 TraesCS7D01G419100 chr6B 85.215 372 45 9 2667 3034 624410490 624410855 1.030000e-99 374.0
43 TraesCS7D01G419100 chr5A 84.474 380 54 5 2664 3041 425564751 425565127 1.330000e-98 370.0
44 TraesCS7D01G419100 chr5B 84.392 378 49 10 2660 3033 479887240 479887611 2.230000e-96 363.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G419100 chr7D 538593794 538596834 3040 False 5616.000000 5616 100.000000 1 3041 1 chr7D.!!$F1 3040
1 TraesCS7D01G419100 chr7D 538139762 538141086 1324 True 1559.000000 1559 88.305000 734 2044 1 chr7D.!!$R1 1310
2 TraesCS7D01G419100 chr7D 538660720 538663155 2435 False 1021.500000 1860 87.629500 229 2044 2 chr7D.!!$F5 1815
3 TraesCS7D01G419100 chr7D 538601186 538605117 3931 False 768.333333 1868 87.711667 275 2666 3 chr7D.!!$F4 2391
4 TraesCS7D01G419100 chr7A 619165913 619167199 1286 True 1530.000000 1530 88.307000 752 2044 1 chr7A.!!$R1 1292
5 TraesCS7D01G419100 chr7A 619575609 619576912 1303 True 1511.000000 1511 87.952000 752 2044 1 chr7A.!!$R2 1292
6 TraesCS7D01G419100 chr7A 619632995 619634287 1292 True 1297.000000 1297 85.263000 757 2044 1 chr7A.!!$R3 1287
7 TraesCS7D01G419100 chr7A 620171357 620172667 1310 False 759.500000 839 90.855500 757 2044 2 chr7A.!!$F3 1287
8 TraesCS7D01G419100 chr7A 619906911 619908670 1759 False 515.750000 1498 90.630250 757 2659 4 chr7A.!!$F2 1902
9 TraesCS7D01G419100 chr7A 620196787 620202567 5780 False 462.000000 1635 87.747800 85 2558 5 chr7A.!!$F4 2473
10 TraesCS7D01G419100 chr7B 580884605 580885919 1314 True 1452.000000 1452 86.953000 734 2046 1 chr7B.!!$R1 1312
11 TraesCS7D01G419100 chr7B 580969007 580970489 1482 True 1303.000000 1303 83.544000 821 2230 1 chr7B.!!$R2 1409
12 TraesCS7D01G419100 chr7B 581332410 581334512 2102 False 866.666667 1581 90.621333 1 2044 3 chr7B.!!$F3 2043
13 TraesCS7D01G419100 chr7B 581313530 581315355 1825 False 800.500000 1312 87.500500 728 2666 2 chr7B.!!$F2 1938

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
436 5059 0.038166 ATTGTCAAGCCGGGACACAT 59.962 50.0 11.07 6.42 44.38 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2312 7998 0.233848 GGGCCGTATTATTTCGCACG 59.766 55.0 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.645588 TGAACAAACAAACCGAGGGTAAAT 59.354 37.500 0.00 0.00 33.12 1.40
77 78 2.773487 AGTAGAGAGATGGGTCGATCG 58.227 52.381 9.36 9.36 0.00 3.69
98 3780 2.158971 GCTGAGCTAAAAGAGAGGGAGG 60.159 54.545 0.00 0.00 0.00 4.30
152 3834 3.582208 GAGAGAGGAGGGCACATGAATAT 59.418 47.826 0.00 0.00 0.00 1.28
153 3835 3.979347 AGAGAGGAGGGCACATGAATATT 59.021 43.478 0.00 0.00 0.00 1.28
176 3858 1.143183 TAATGAGCTTCCGCCCGTC 59.857 57.895 0.00 0.00 36.60 4.79
180 3862 3.591254 GAGCTTCCGCCCGTCAAGT 62.591 63.158 0.00 0.00 36.60 3.16
183 3865 1.632948 GCTTCCGCCCGTCAAGTAAC 61.633 60.000 0.00 0.00 0.00 2.50
192 3874 2.424601 CCCGTCAAGTAACCGACTGATA 59.575 50.000 0.00 0.00 38.87 2.15
193 3875 3.119388 CCCGTCAAGTAACCGACTGATAA 60.119 47.826 0.00 0.00 38.87 1.75
219 3904 6.757897 AAAAGCCATCAGTCGAAATATTCA 57.242 33.333 0.00 0.00 0.00 2.57
220 3905 6.949352 AAAGCCATCAGTCGAAATATTCAT 57.051 33.333 0.00 0.00 0.00 2.57
221 3906 6.551385 AAGCCATCAGTCGAAATATTCATC 57.449 37.500 0.00 0.00 0.00 2.92
222 3907 5.614308 AGCCATCAGTCGAAATATTCATCA 58.386 37.500 0.00 0.00 0.00 3.07
223 3908 5.699915 AGCCATCAGTCGAAATATTCATCAG 59.300 40.000 0.00 0.00 0.00 2.90
225 3910 5.106791 CCATCAGTCGAAATATTCATCAGCC 60.107 44.000 0.00 0.00 0.00 4.85
226 3911 4.380531 TCAGTCGAAATATTCATCAGCCC 58.619 43.478 0.00 0.00 0.00 5.19
230 3915 5.297776 AGTCGAAATATTCATCAGCCCAAAG 59.702 40.000 0.00 0.00 0.00 2.77
233 3918 6.038603 TCGAAATATTCATCAGCCCAAAGAAG 59.961 38.462 0.00 0.00 0.00 2.85
241 3978 1.338020 CAGCCCAAAGAAGACAACACC 59.662 52.381 0.00 0.00 0.00 4.16
242 3979 0.673985 GCCCAAAGAAGACAACACCC 59.326 55.000 0.00 0.00 0.00 4.61
262 3999 4.411869 ACCCAAATCAACTGACCCAAATTT 59.588 37.500 0.00 0.00 0.00 1.82
263 4000 5.604650 ACCCAAATCAACTGACCCAAATTTA 59.395 36.000 0.00 0.00 0.00 1.40
264 4001 6.100424 ACCCAAATCAACTGACCCAAATTTAA 59.900 34.615 0.00 0.00 0.00 1.52
436 5059 0.038166 ATTGTCAAGCCGGGACACAT 59.962 50.000 11.07 6.42 44.38 3.21
460 5083 0.827925 ACAGAACCAGCTCGTCCTCA 60.828 55.000 0.00 0.00 0.00 3.86
465 5088 1.739562 CCAGCTCGTCCTCAACAGC 60.740 63.158 0.00 0.00 34.31 4.40
467 5090 1.013005 CAGCTCGTCCTCAACAGCTG 61.013 60.000 13.48 13.48 45.19 4.24
469 5092 1.739562 CTCGTCCTCAACAGCTGCC 60.740 63.158 15.27 0.00 0.00 4.85
523 5147 0.327591 GATCATCCATCCCCTGCTCC 59.672 60.000 0.00 0.00 0.00 4.70
525 5149 0.402419 TCATCCATCCCCTGCTCCAT 60.402 55.000 0.00 0.00 0.00 3.41
526 5150 0.251209 CATCCATCCCCTGCTCCATG 60.251 60.000 0.00 0.00 0.00 3.66
527 5151 0.402419 ATCCATCCCCTGCTCCATGA 60.402 55.000 0.00 0.00 0.00 3.07
532 5156 2.442236 TCCCCTGCTCCATGATTTTC 57.558 50.000 0.00 0.00 0.00 2.29
533 5157 1.925255 TCCCCTGCTCCATGATTTTCT 59.075 47.619 0.00 0.00 0.00 2.52
534 5158 2.312741 TCCCCTGCTCCATGATTTTCTT 59.687 45.455 0.00 0.00 0.00 2.52
535 5159 2.692041 CCCCTGCTCCATGATTTTCTTC 59.308 50.000 0.00 0.00 0.00 2.87
537 5161 4.021916 CCCTGCTCCATGATTTTCTTCTT 58.978 43.478 0.00 0.00 0.00 2.52
540 5164 5.418209 CCTGCTCCATGATTTTCTTCTTCTT 59.582 40.000 0.00 0.00 0.00 2.52
541 5165 6.404513 CCTGCTCCATGATTTTCTTCTTCTTC 60.405 42.308 0.00 0.00 0.00 2.87
542 5166 6.243900 TGCTCCATGATTTTCTTCTTCTTCT 58.756 36.000 0.00 0.00 0.00 2.85
543 5167 6.373774 TGCTCCATGATTTTCTTCTTCTTCTC 59.626 38.462 0.00 0.00 0.00 2.87
544 5168 6.598850 GCTCCATGATTTTCTTCTTCTTCTCT 59.401 38.462 0.00 0.00 0.00 3.10
545 5169 7.414319 GCTCCATGATTTTCTTCTTCTTCTCTG 60.414 40.741 0.00 0.00 0.00 3.35
546 5170 7.456725 TCCATGATTTTCTTCTTCTTCTCTGT 58.543 34.615 0.00 0.00 0.00 3.41
547 5171 8.597167 TCCATGATTTTCTTCTTCTTCTCTGTA 58.403 33.333 0.00 0.00 0.00 2.74
548 5172 8.881743 CCATGATTTTCTTCTTCTTCTCTGTAG 58.118 37.037 0.00 0.00 0.00 2.74
555 5179 5.952347 TCTTCTTCTTCTCTGTAGTGCCATA 59.048 40.000 0.00 0.00 0.00 2.74
559 5183 3.963374 TCTTCTCTGTAGTGCCATATGCT 59.037 43.478 0.00 0.00 42.00 3.79
594 5238 1.667236 CATCTCAAACGCCATGGCTA 58.333 50.000 33.07 12.90 39.32 3.93
606 5250 2.294512 GCCATGGCTACAAATTAGGAGC 59.705 50.000 29.98 0.00 38.26 4.70
617 5261 0.179018 ATTAGGAGCCGTTGCATCCC 60.179 55.000 0.00 0.00 41.13 3.85
628 5272 2.288666 GTTGCATCCCGAAATCTGCTA 58.711 47.619 0.00 0.00 35.66 3.49
911 5617 2.033299 ACACAAACACAAGCTTCCATCG 59.967 45.455 0.00 0.00 0.00 3.84
912 5618 1.608590 ACAAACACAAGCTTCCATCGG 59.391 47.619 0.00 0.00 0.00 4.18
945 5659 6.183360 CCTCCTCATCAACCTTCTTCTACTAC 60.183 46.154 0.00 0.00 0.00 2.73
1295 6062 4.397420 TCATCTGCTTCTTGGTTTGCTTA 58.603 39.130 0.00 0.00 0.00 3.09
1300 6067 3.003275 TGCTTCTTGGTTTGCTTAGTTCG 59.997 43.478 0.00 0.00 0.00 3.95
1403 6171 2.519013 GACTTTGAGTTCCTGGGCAAT 58.481 47.619 0.00 0.00 0.00 3.56
1546 6314 6.637795 CTGGAACCCAAAGCACATCATGTG 62.638 50.000 13.93 13.93 41.47 3.21
1562 6330 0.375454 TGTGAGTTTGTTGAACGCCG 59.625 50.000 0.00 0.00 43.20 6.46
1591 6403 1.159285 TCAAGAACAATGCAGGAGCG 58.841 50.000 0.00 0.00 46.23 5.03
1610 6426 1.017387 GGATGGACTGACCGATTTGC 58.983 55.000 0.00 0.00 42.61 3.68
1611 6427 1.017387 GATGGACTGACCGATTTGCC 58.983 55.000 0.00 0.00 42.61 4.52
1752 6576 4.980805 GACGACTGGGCCACGCAA 62.981 66.667 15.60 0.00 0.00 4.85
1755 6579 4.329545 GACTGGGCCACGCAAGGA 62.330 66.667 0.00 0.00 46.39 3.36
2064 6924 3.209812 CCTGTCGATCGCCGGAGA 61.210 66.667 11.31 11.31 39.14 3.71
2104 6968 4.351111 GGGAAGATGGGGTGTCTGTATAAT 59.649 45.833 0.00 0.00 0.00 1.28
2126 6994 7.928307 AATCCGATATCAATAAGGATTGGTG 57.072 36.000 16.55 0.00 46.39 4.17
2128 6996 6.464222 TCCGATATCAATAAGGATTGGTGAC 58.536 40.000 3.12 0.00 42.45 3.67
2129 6997 6.270000 TCCGATATCAATAAGGATTGGTGACT 59.730 38.462 3.12 0.00 42.45 3.41
2132 7000 4.235079 TCAATAAGGATTGGTGACTGGG 57.765 45.455 0.00 0.00 42.45 4.45
2134 7002 4.080356 TCAATAAGGATTGGTGACTGGGAG 60.080 45.833 0.00 0.00 42.45 4.30
2135 7003 2.044793 AAGGATTGGTGACTGGGAGA 57.955 50.000 0.00 0.00 0.00 3.71
2166 7034 2.188817 AGCCGGTGGTAGATTCTTCTT 58.811 47.619 1.90 0.00 33.17 2.52
2169 7039 3.270877 CCGGTGGTAGATTCTTCTTTGG 58.729 50.000 0.00 0.00 33.17 3.28
2188 7058 2.544480 GCATTTACGCCCAGTTCTTC 57.456 50.000 0.00 0.00 0.00 2.87
2230 7102 3.702330 TCGTGTGTAATCTATTGCCTCG 58.298 45.455 0.00 0.00 0.00 4.63
2237 7109 4.336153 TGTAATCTATTGCCTCGTCGTACA 59.664 41.667 0.00 0.00 0.00 2.90
2272 7958 1.338337 GTATGCTGCTCTCGGCTCTAA 59.662 52.381 0.00 0.00 44.83 2.10
2276 7962 1.596727 GCTGCTCTCGGCTCTAATTTG 59.403 52.381 0.00 0.00 41.36 2.32
2277 7963 2.208431 CTGCTCTCGGCTCTAATTTGG 58.792 52.381 0.00 0.00 42.39 3.28
2280 7966 2.609916 GCTCTCGGCTCTAATTTGGAAC 59.390 50.000 0.00 0.00 38.06 3.62
2281 7967 3.861840 CTCTCGGCTCTAATTTGGAACA 58.138 45.455 0.00 0.00 0.00 3.18
2282 7968 3.861840 TCTCGGCTCTAATTTGGAACAG 58.138 45.455 0.00 0.00 42.39 3.16
2283 7969 2.352960 CTCGGCTCTAATTTGGAACAGC 59.647 50.000 0.00 0.00 42.39 4.40
2284 7970 1.062587 CGGCTCTAATTTGGAACAGCG 59.937 52.381 0.00 0.00 42.39 5.18
2285 7971 2.084546 GGCTCTAATTTGGAACAGCGT 58.915 47.619 0.00 0.00 42.39 5.07
2286 7972 2.096013 GGCTCTAATTTGGAACAGCGTC 59.904 50.000 0.00 0.00 42.39 5.19
2287 7973 2.742053 GCTCTAATTTGGAACAGCGTCA 59.258 45.455 0.00 0.00 42.39 4.35
2289 7975 4.570772 GCTCTAATTTGGAACAGCGTCATA 59.429 41.667 0.00 0.00 42.39 2.15
2291 7977 6.238484 GCTCTAATTTGGAACAGCGTCATATT 60.238 38.462 0.00 0.00 42.39 1.28
2292 7978 7.624360 TCTAATTTGGAACAGCGTCATATTT 57.376 32.000 0.00 0.00 42.39 1.40
2293 7979 7.471721 TCTAATTTGGAACAGCGTCATATTTG 58.528 34.615 0.00 0.00 42.39 2.32
2294 7980 5.643379 ATTTGGAACAGCGTCATATTTGT 57.357 34.783 0.00 0.00 42.39 2.83
2296 7982 3.006940 TGGAACAGCGTCATATTTGTCC 58.993 45.455 0.00 0.00 0.00 4.02
2299 7985 4.873827 GGAACAGCGTCATATTTGTCCTTA 59.126 41.667 0.00 0.00 0.00 2.69
2300 7986 5.220605 GGAACAGCGTCATATTTGTCCTTAC 60.221 44.000 0.00 0.00 0.00 2.34
2301 7987 4.827692 ACAGCGTCATATTTGTCCTTACA 58.172 39.130 0.00 0.00 0.00 2.41
2302 7988 5.428253 ACAGCGTCATATTTGTCCTTACAT 58.572 37.500 0.00 0.00 34.97 2.29
2303 7989 5.523916 ACAGCGTCATATTTGTCCTTACATC 59.476 40.000 0.00 0.00 34.97 3.06
2304 7990 5.050091 CAGCGTCATATTTGTCCTTACATCC 60.050 44.000 0.00 0.00 34.97 3.51
2305 7991 5.057149 GCGTCATATTTGTCCTTACATCCT 58.943 41.667 0.00 0.00 34.97 3.24
2306 7992 5.527582 GCGTCATATTTGTCCTTACATCCTT 59.472 40.000 0.00 0.00 34.97 3.36
2307 7993 6.704493 GCGTCATATTTGTCCTTACATCCTTA 59.296 38.462 0.00 0.00 34.97 2.69
2308 7994 7.307219 GCGTCATATTTGTCCTTACATCCTTAC 60.307 40.741 0.00 0.00 34.97 2.34
2309 7995 7.096189 CGTCATATTTGTCCTTACATCCTTACG 60.096 40.741 0.00 0.00 34.97 3.18
2310 7996 7.709613 GTCATATTTGTCCTTACATCCTTACGT 59.290 37.037 0.00 0.00 34.97 3.57
2311 7997 8.916062 TCATATTTGTCCTTACATCCTTACGTA 58.084 33.333 0.00 0.00 34.97 3.57
2312 7998 8.975439 CATATTTGTCCTTACATCCTTACGTAC 58.025 37.037 0.00 0.00 34.97 3.67
2313 7999 4.621068 TGTCCTTACATCCTTACGTACG 57.379 45.455 15.01 15.01 0.00 3.67
2314 8000 4.009675 TGTCCTTACATCCTTACGTACGT 58.990 43.478 25.98 25.98 0.00 3.57
2315 8001 4.142622 TGTCCTTACATCCTTACGTACGTG 60.143 45.833 30.25 14.68 0.00 4.49
2316 8002 3.111098 CCTTACATCCTTACGTACGTGC 58.889 50.000 30.25 0.00 0.00 5.34
2317 8003 2.456942 TACATCCTTACGTACGTGCG 57.543 50.000 30.25 24.57 37.94 5.34
2318 8004 0.804364 ACATCCTTACGTACGTGCGA 59.196 50.000 32.30 20.96 35.59 5.10
2319 8005 1.199789 ACATCCTTACGTACGTGCGAA 59.800 47.619 32.30 19.20 35.59 4.70
2320 8006 2.252747 CATCCTTACGTACGTGCGAAA 58.747 47.619 32.30 16.57 35.59 3.46
2321 8007 2.634982 TCCTTACGTACGTGCGAAAT 57.365 45.000 32.30 12.89 35.59 2.17
2322 8008 3.755965 TCCTTACGTACGTGCGAAATA 57.244 42.857 32.30 11.80 35.59 1.40
2323 8009 4.090138 TCCTTACGTACGTGCGAAATAA 57.910 40.909 32.30 18.24 35.59 1.40
2324 8010 4.671377 TCCTTACGTACGTGCGAAATAAT 58.329 39.130 32.30 11.35 35.59 1.28
2325 8011 5.815850 TCCTTACGTACGTGCGAAATAATA 58.184 37.500 32.30 10.28 35.59 0.98
2326 8012 5.681105 TCCTTACGTACGTGCGAAATAATAC 59.319 40.000 32.30 0.00 35.59 1.89
2327 8013 5.385314 CCTTACGTACGTGCGAAATAATACG 60.385 44.000 32.30 15.39 40.81 3.06
2328 8014 2.783284 ACGTACGTGCGAAATAATACGG 59.217 45.455 32.30 0.00 39.66 4.02
2329 8015 2.407609 CGTACGTGCGAAATAATACGGC 60.408 50.000 21.98 0.00 40.56 5.68
2330 8016 0.932399 ACGTGCGAAATAATACGGCC 59.068 50.000 0.00 0.00 40.56 6.13
2331 8017 0.233848 CGTGCGAAATAATACGGCCC 59.766 55.000 0.00 0.00 33.27 5.80
2332 8018 1.589803 GTGCGAAATAATACGGCCCT 58.410 50.000 0.00 0.00 0.00 5.19
2333 8019 2.758009 GTGCGAAATAATACGGCCCTA 58.242 47.619 0.00 0.00 0.00 3.53
2376 8063 5.063564 GTGATTGTCCGATGAAAAGACCTAC 59.936 44.000 0.00 0.00 0.00 3.18
2419 8107 8.715088 ACAAGCAAAATCATTTTATTCTGCTTC 58.285 29.630 13.70 0.00 35.81 3.86
2421 8109 7.092716 AGCAAAATCATTTTATTCTGCTTCGT 58.907 30.769 1.09 0.00 0.00 3.85
2434 8122 1.702491 GCTTCGTCCATTGGGTACGC 61.702 60.000 11.09 2.35 37.51 4.42
2435 8123 1.078988 TTCGTCCATTGGGTACGCC 60.079 57.895 11.09 0.31 37.51 5.68
2439 8127 3.505184 CCATTGGGTACGCCGCAC 61.505 66.667 7.55 0.00 35.46 5.34
2478 8191 4.767255 GCTCGGTCAGTGCAGGGG 62.767 72.222 0.00 0.00 39.04 4.79
2669 8392 3.601277 CAGTCTTGCAGCTCTGTGA 57.399 52.632 0.00 0.00 0.00 3.58
2670 8393 1.875009 CAGTCTTGCAGCTCTGTGAA 58.125 50.000 0.00 0.00 0.00 3.18
2671 8394 2.216046 CAGTCTTGCAGCTCTGTGAAA 58.784 47.619 0.00 0.00 0.00 2.69
2672 8395 2.615447 CAGTCTTGCAGCTCTGTGAAAA 59.385 45.455 0.00 0.00 0.00 2.29
2673 8396 3.065786 CAGTCTTGCAGCTCTGTGAAAAA 59.934 43.478 0.00 0.00 0.00 1.94
2674 8397 3.887716 AGTCTTGCAGCTCTGTGAAAAAT 59.112 39.130 0.00 0.00 0.00 1.82
2675 8398 4.023365 AGTCTTGCAGCTCTGTGAAAAATC 60.023 41.667 0.00 0.00 0.00 2.17
2676 8399 3.884693 TCTTGCAGCTCTGTGAAAAATCA 59.115 39.130 0.00 0.00 0.00 2.57
2677 8400 3.631145 TGCAGCTCTGTGAAAAATCAC 57.369 42.857 2.09 2.09 40.78 3.06
2678 8401 2.031769 TGCAGCTCTGTGAAAAATCACG 60.032 45.455 4.68 0.76 43.12 4.35
2679 8402 2.224079 GCAGCTCTGTGAAAAATCACGA 59.776 45.455 4.68 4.53 43.12 4.35
2680 8403 3.303990 GCAGCTCTGTGAAAAATCACGAA 60.304 43.478 4.68 0.00 43.12 3.85
2681 8404 4.789481 GCAGCTCTGTGAAAAATCACGAAA 60.789 41.667 4.68 0.00 43.12 3.46
2682 8405 4.672413 CAGCTCTGTGAAAAATCACGAAAC 59.328 41.667 4.68 1.88 43.12 2.78
2683 8406 4.576463 AGCTCTGTGAAAAATCACGAAACT 59.424 37.500 4.68 3.62 43.12 2.66
2684 8407 4.672413 GCTCTGTGAAAAATCACGAAACTG 59.328 41.667 4.68 0.00 43.12 3.16
2685 8408 5.168526 TCTGTGAAAAATCACGAAACTGG 57.831 39.130 4.68 0.00 43.12 4.00
2686 8409 3.701241 TGTGAAAAATCACGAAACTGGC 58.299 40.909 4.68 0.00 43.12 4.85
2687 8410 3.049912 GTGAAAAATCACGAAACTGGCC 58.950 45.455 0.00 0.00 0.00 5.36
2688 8411 2.035321 TGAAAAATCACGAAACTGGCCC 59.965 45.455 0.00 0.00 0.00 5.80
2689 8412 1.995376 AAAATCACGAAACTGGCCCT 58.005 45.000 0.00 0.00 0.00 5.19
2690 8413 1.995376 AAATCACGAAACTGGCCCTT 58.005 45.000 0.00 0.00 0.00 3.95
2691 8414 1.995376 AATCACGAAACTGGCCCTTT 58.005 45.000 0.00 0.00 0.00 3.11
2692 8415 1.247567 ATCACGAAACTGGCCCTTTG 58.752 50.000 0.00 0.00 0.00 2.77
2693 8416 0.821711 TCACGAAACTGGCCCTTTGG 60.822 55.000 0.00 1.64 0.00 3.28
2705 8428 0.033920 CCCTTTGGCCAAAGTTCAGC 59.966 55.000 41.82 0.00 44.66 4.26
2706 8429 0.752054 CCTTTGGCCAAAGTTCAGCA 59.248 50.000 41.82 17.85 44.66 4.41
2707 8430 1.538849 CCTTTGGCCAAAGTTCAGCAC 60.539 52.381 41.82 0.00 44.66 4.40
2708 8431 1.136695 CTTTGGCCAAAGTTCAGCACA 59.863 47.619 39.09 13.67 42.02 4.57
2709 8432 1.189752 TTGGCCAAAGTTCAGCACAA 58.810 45.000 17.98 0.00 0.00 3.33
2710 8433 1.189752 TGGCCAAAGTTCAGCACAAA 58.810 45.000 0.61 0.00 0.00 2.83
2711 8434 1.552337 TGGCCAAAGTTCAGCACAAAA 59.448 42.857 0.61 0.00 0.00 2.44
2712 8435 2.170187 TGGCCAAAGTTCAGCACAAAAT 59.830 40.909 0.61 0.00 0.00 1.82
2713 8436 2.545106 GGCCAAAGTTCAGCACAAAATG 59.455 45.455 0.00 0.00 0.00 2.32
2714 8437 2.545106 GCCAAAGTTCAGCACAAAATGG 59.455 45.455 0.00 0.00 0.00 3.16
2715 8438 3.740764 GCCAAAGTTCAGCACAAAATGGA 60.741 43.478 0.00 0.00 0.00 3.41
2716 8439 4.634199 CCAAAGTTCAGCACAAAATGGAT 58.366 39.130 0.00 0.00 0.00 3.41
2717 8440 4.687483 CCAAAGTTCAGCACAAAATGGATC 59.313 41.667 0.00 0.00 0.00 3.36
2718 8441 4.525912 AAGTTCAGCACAAAATGGATCC 57.474 40.909 4.20 4.20 0.00 3.36
2719 8442 3.771216 AGTTCAGCACAAAATGGATCCT 58.229 40.909 14.23 0.00 0.00 3.24
2720 8443 4.154942 AGTTCAGCACAAAATGGATCCTT 58.845 39.130 14.23 3.29 0.00 3.36
2721 8444 4.590222 AGTTCAGCACAAAATGGATCCTTT 59.410 37.500 14.23 10.41 0.00 3.11
2722 8445 4.524316 TCAGCACAAAATGGATCCTTTG 57.476 40.909 19.77 19.77 38.29 2.77
2723 8446 3.896888 TCAGCACAAAATGGATCCTTTGT 59.103 39.130 20.84 20.84 44.53 2.83
2724 8447 4.344679 TCAGCACAAAATGGATCCTTTGTT 59.655 37.500 22.95 11.76 41.77 2.83
2725 8448 5.538053 TCAGCACAAAATGGATCCTTTGTTA 59.462 36.000 22.95 10.90 41.77 2.41
2726 8449 6.041409 TCAGCACAAAATGGATCCTTTGTTAA 59.959 34.615 22.95 10.64 41.77 2.01
2727 8450 6.705381 CAGCACAAAATGGATCCTTTGTTAAA 59.295 34.615 22.95 0.00 41.77 1.52
2728 8451 7.226325 CAGCACAAAATGGATCCTTTGTTAAAA 59.774 33.333 22.95 0.00 41.77 1.52
2729 8452 7.772757 AGCACAAAATGGATCCTTTGTTAAAAA 59.227 29.630 22.95 0.00 41.77 1.94
2751 8474 2.683211 AATCATGGAATGGCCCTACC 57.317 50.000 0.00 0.57 46.73 3.18
2759 8482 2.998097 TGGCCCTACCAGCATGAC 59.002 61.111 0.00 0.00 46.36 3.06
2760 8483 2.203070 GGCCCTACCAGCATGACG 60.203 66.667 0.00 0.00 39.69 4.35
2761 8484 2.897350 GCCCTACCAGCATGACGC 60.897 66.667 0.00 0.00 39.69 5.19
2762 8485 2.203070 CCCTACCAGCATGACGCC 60.203 66.667 0.00 0.00 44.04 5.68
2763 8486 2.203070 CCTACCAGCATGACGCCC 60.203 66.667 0.00 0.00 44.04 6.13
2764 8487 2.586079 CTACCAGCATGACGCCCG 60.586 66.667 0.00 0.00 44.04 6.13
2765 8488 4.830765 TACCAGCATGACGCCCGC 62.831 66.667 0.00 0.00 44.04 6.13
2784 8507 4.943252 CCTGGGGCGCCATGCTAG 62.943 72.222 30.85 17.81 45.43 3.42
2785 8508 3.865383 CTGGGGCGCCATGCTAGA 61.865 66.667 30.85 0.00 45.43 2.43
2786 8509 3.170672 TGGGGCGCCATGCTAGAT 61.171 61.111 30.85 0.00 45.43 1.98
2787 8510 1.830587 CTGGGGCGCCATGCTAGATA 61.831 60.000 30.85 1.73 45.43 1.98
2788 8511 1.376037 GGGGCGCCATGCTAGATAC 60.376 63.158 30.85 6.06 45.43 2.24
2789 8512 1.376037 GGGCGCCATGCTAGATACC 60.376 63.158 30.85 1.22 45.43 2.73
2790 8513 1.371183 GGCGCCATGCTAGATACCA 59.629 57.895 24.80 0.00 45.43 3.25
2791 8514 0.036010 GGCGCCATGCTAGATACCAT 60.036 55.000 24.80 0.00 45.43 3.55
2792 8515 1.207089 GGCGCCATGCTAGATACCATA 59.793 52.381 24.80 0.00 45.43 2.74
2793 8516 2.354704 GGCGCCATGCTAGATACCATAA 60.355 50.000 24.80 0.00 45.43 1.90
2794 8517 2.673368 GCGCCATGCTAGATACCATAAC 59.327 50.000 0.00 0.00 41.73 1.89
2795 8518 3.864540 GCGCCATGCTAGATACCATAACA 60.865 47.826 0.00 0.00 41.73 2.41
2796 8519 3.679980 CGCCATGCTAGATACCATAACAC 59.320 47.826 0.00 0.00 0.00 3.32
2797 8520 4.561530 CGCCATGCTAGATACCATAACACT 60.562 45.833 0.00 0.00 0.00 3.55
2798 8521 4.932200 GCCATGCTAGATACCATAACACTC 59.068 45.833 0.00 0.00 0.00 3.51
2799 8522 5.279708 GCCATGCTAGATACCATAACACTCT 60.280 44.000 0.00 0.00 0.00 3.24
2800 8523 6.162079 CCATGCTAGATACCATAACACTCTG 58.838 44.000 0.00 0.00 0.00 3.35
2801 8524 5.791336 TGCTAGATACCATAACACTCTGG 57.209 43.478 0.00 0.00 38.55 3.86
2803 8526 5.302059 TGCTAGATACCATAACACTCTGGTC 59.698 44.000 0.00 0.00 44.56 4.02
2804 8527 5.302059 GCTAGATACCATAACACTCTGGTCA 59.698 44.000 0.00 0.00 44.56 4.02
2805 8528 6.183360 GCTAGATACCATAACACTCTGGTCAA 60.183 42.308 0.00 0.00 44.56 3.18
2806 8529 6.620877 AGATACCATAACACTCTGGTCAAA 57.379 37.500 0.00 0.00 44.56 2.69
2807 8530 6.644347 AGATACCATAACACTCTGGTCAAAG 58.356 40.000 0.00 0.00 44.56 2.77
2808 8531 4.021102 ACCATAACACTCTGGTCAAAGG 57.979 45.455 0.00 0.00 42.04 3.11
2809 8532 2.749621 CCATAACACTCTGGTCAAAGGC 59.250 50.000 0.00 0.00 0.00 4.35
2810 8533 2.163818 TAACACTCTGGTCAAAGGCG 57.836 50.000 0.00 0.00 0.00 5.52
2811 8534 1.166531 AACACTCTGGTCAAAGGCGC 61.167 55.000 0.00 0.00 0.00 6.53
2812 8535 2.032681 ACTCTGGTCAAAGGCGCC 59.967 61.111 21.89 21.89 0.00 6.53
2813 8536 2.032528 CTCTGGTCAAAGGCGCCA 59.967 61.111 31.54 4.11 0.00 5.69
2814 8537 1.377725 CTCTGGTCAAAGGCGCCAT 60.378 57.895 31.54 15.82 0.00 4.40
2815 8538 1.372087 CTCTGGTCAAAGGCGCCATC 61.372 60.000 31.54 8.81 0.00 3.51
2816 8539 2.361104 TGGTCAAAGGCGCCATCC 60.361 61.111 31.54 21.54 0.00 3.51
2817 8540 3.508840 GGTCAAAGGCGCCATCCG 61.509 66.667 31.54 14.16 40.75 4.18
2840 8563 3.188786 GCGCTAACTGCCACCTCG 61.189 66.667 0.00 0.00 38.78 4.63
2841 8564 2.509336 CGCTAACTGCCACCTCGG 60.509 66.667 0.00 0.00 38.78 4.63
2850 8573 3.322466 CCACCTCGGCCTGGACTT 61.322 66.667 17.14 0.00 0.00 3.01
2851 8574 2.046892 CACCTCGGCCTGGACTTG 60.047 66.667 17.14 3.10 0.00 3.16
2852 8575 3.322466 ACCTCGGCCTGGACTTGG 61.322 66.667 17.14 1.42 0.00 3.61
2853 8576 4.101448 CCTCGGCCTGGACTTGGG 62.101 72.222 0.00 0.00 0.00 4.12
2854 8577 4.785453 CTCGGCCTGGACTTGGGC 62.785 72.222 0.00 0.00 46.89 5.36
2858 8581 4.066139 GCCTGGACTTGGGCCCAT 62.066 66.667 29.23 12.74 42.30 4.00
2859 8582 2.043652 CCTGGACTTGGGCCCATG 60.044 66.667 31.08 31.08 0.00 3.66
2860 8583 2.615465 CCTGGACTTGGGCCCATGA 61.615 63.158 37.33 19.75 0.00 3.07
2861 8584 1.379044 CTGGACTTGGGCCCATGAC 60.379 63.158 37.33 31.19 0.00 3.06
2862 8585 2.438434 GGACTTGGGCCCATGACG 60.438 66.667 37.33 22.94 0.00 4.35
2863 8586 3.134127 GACTTGGGCCCATGACGC 61.134 66.667 37.33 23.48 0.00 5.19
2864 8587 4.740822 ACTTGGGCCCATGACGCC 62.741 66.667 37.33 13.76 46.29 5.68
2865 8588 4.431131 CTTGGGCCCATGACGCCT 62.431 66.667 29.65 0.00 46.24 5.52
2866 8589 4.424711 TTGGGCCCATGACGCCTC 62.425 66.667 29.23 12.17 46.24 4.70
2886 8609 3.341629 CCCAGGGTGCCATGGTCT 61.342 66.667 19.00 3.48 34.58 3.85
2887 8610 2.044650 CCAGGGTGCCATGGTCTG 60.045 66.667 14.67 14.90 0.00 3.51
2888 8611 2.759114 CAGGGTGCCATGGTCTGT 59.241 61.111 14.67 0.00 0.00 3.41
2889 8612 1.561769 CCAGGGTGCCATGGTCTGTA 61.562 60.000 14.67 0.00 0.00 2.74
2890 8613 0.392998 CAGGGTGCCATGGTCTGTAC 60.393 60.000 14.67 5.26 0.00 2.90
2891 8614 1.077716 GGGTGCCATGGTCTGTACC 60.078 63.158 14.67 13.45 46.98 3.34
2899 8622 2.126189 GGTCTGTACCACGACGCC 60.126 66.667 0.00 0.00 45.98 5.68
2900 8623 2.126189 GTCTGTACCACGACGCCC 60.126 66.667 0.00 0.00 0.00 6.13
2901 8624 3.376078 TCTGTACCACGACGCCCC 61.376 66.667 0.00 0.00 0.00 5.80
2902 8625 4.789075 CTGTACCACGACGCCCCG 62.789 72.222 0.00 0.00 0.00 5.73
2925 8648 3.804329 GGGCGCCATACCCCTTCA 61.804 66.667 30.85 0.00 42.01 3.02
2926 8649 2.516225 GGCGCCATACCCCTTCAC 60.516 66.667 24.80 0.00 0.00 3.18
2927 8650 2.516225 GCGCCATACCCCTTCACC 60.516 66.667 0.00 0.00 0.00 4.02
2928 8651 2.994699 CGCCATACCCCTTCACCA 59.005 61.111 0.00 0.00 0.00 4.17
2929 8652 1.531748 CGCCATACCCCTTCACCAT 59.468 57.895 0.00 0.00 0.00 3.55
2930 8653 0.762418 CGCCATACCCCTTCACCATA 59.238 55.000 0.00 0.00 0.00 2.74
2931 8654 1.351017 CGCCATACCCCTTCACCATAT 59.649 52.381 0.00 0.00 0.00 1.78
2932 8655 2.224769 CGCCATACCCCTTCACCATATT 60.225 50.000 0.00 0.00 0.00 1.28
2933 8656 3.157087 GCCATACCCCTTCACCATATTG 58.843 50.000 0.00 0.00 0.00 1.90
2934 8657 3.157087 CCATACCCCTTCACCATATTGC 58.843 50.000 0.00 0.00 0.00 3.56
2935 8658 3.181429 CCATACCCCTTCACCATATTGCT 60.181 47.826 0.00 0.00 0.00 3.91
2936 8659 2.442236 ACCCCTTCACCATATTGCTG 57.558 50.000 0.00 0.00 0.00 4.41
2937 8660 1.035139 CCCCTTCACCATATTGCTGC 58.965 55.000 0.00 0.00 0.00 5.25
2938 8661 1.035139 CCCTTCACCATATTGCTGCC 58.965 55.000 0.00 0.00 0.00 4.85
2939 8662 1.035139 CCTTCACCATATTGCTGCCC 58.965 55.000 0.00 0.00 0.00 5.36
2940 8663 0.664761 CTTCACCATATTGCTGCCCG 59.335 55.000 0.00 0.00 0.00 6.13
2941 8664 0.254462 TTCACCATATTGCTGCCCGA 59.746 50.000 0.00 0.00 0.00 5.14
2942 8665 0.179048 TCACCATATTGCTGCCCGAG 60.179 55.000 0.00 0.00 0.00 4.63
2959 8682 2.988800 GCCCTCTGCTCTCTGCTT 59.011 61.111 0.00 0.00 43.37 3.91
2960 8683 1.153389 GCCCTCTGCTCTCTGCTTC 60.153 63.158 0.00 0.00 43.37 3.86
2961 8684 1.141449 CCCTCTGCTCTCTGCTTCG 59.859 63.158 0.00 0.00 43.37 3.79
2962 8685 1.603236 CCCTCTGCTCTCTGCTTCGT 61.603 60.000 0.00 0.00 43.37 3.85
2963 8686 0.246086 CCTCTGCTCTCTGCTTCGTT 59.754 55.000 0.00 0.00 43.37 3.85
2964 8687 1.627879 CTCTGCTCTCTGCTTCGTTC 58.372 55.000 0.00 0.00 43.37 3.95
2965 8688 1.202114 CTCTGCTCTCTGCTTCGTTCT 59.798 52.381 0.00 0.00 43.37 3.01
2966 8689 1.615883 TCTGCTCTCTGCTTCGTTCTT 59.384 47.619 0.00 0.00 43.37 2.52
2967 8690 2.036475 TCTGCTCTCTGCTTCGTTCTTT 59.964 45.455 0.00 0.00 43.37 2.52
2968 8691 2.408050 TGCTCTCTGCTTCGTTCTTTC 58.592 47.619 0.00 0.00 43.37 2.62
2969 8692 1.729517 GCTCTCTGCTTCGTTCTTTCC 59.270 52.381 0.00 0.00 38.95 3.13
2970 8693 2.342179 CTCTCTGCTTCGTTCTTTCCC 58.658 52.381 0.00 0.00 0.00 3.97
2971 8694 1.002087 TCTCTGCTTCGTTCTTTCCCC 59.998 52.381 0.00 0.00 0.00 4.81
2972 8695 1.002544 CTCTGCTTCGTTCTTTCCCCT 59.997 52.381 0.00 0.00 0.00 4.79
2973 8696 1.420138 TCTGCTTCGTTCTTTCCCCTT 59.580 47.619 0.00 0.00 0.00 3.95
2974 8697 1.807142 CTGCTTCGTTCTTTCCCCTTC 59.193 52.381 0.00 0.00 0.00 3.46
2975 8698 1.420138 TGCTTCGTTCTTTCCCCTTCT 59.580 47.619 0.00 0.00 0.00 2.85
2976 8699 2.158667 TGCTTCGTTCTTTCCCCTTCTT 60.159 45.455 0.00 0.00 0.00 2.52
2977 8700 2.885266 GCTTCGTTCTTTCCCCTTCTTT 59.115 45.455 0.00 0.00 0.00 2.52
2978 8701 3.304726 GCTTCGTTCTTTCCCCTTCTTTG 60.305 47.826 0.00 0.00 0.00 2.77
2979 8702 3.570912 TCGTTCTTTCCCCTTCTTTGT 57.429 42.857 0.00 0.00 0.00 2.83
2980 8703 3.893521 TCGTTCTTTCCCCTTCTTTGTT 58.106 40.909 0.00 0.00 0.00 2.83
2981 8704 4.274978 TCGTTCTTTCCCCTTCTTTGTTT 58.725 39.130 0.00 0.00 0.00 2.83
2982 8705 4.337274 TCGTTCTTTCCCCTTCTTTGTTTC 59.663 41.667 0.00 0.00 0.00 2.78
2983 8706 4.338400 CGTTCTTTCCCCTTCTTTGTTTCT 59.662 41.667 0.00 0.00 0.00 2.52
2984 8707 5.163550 CGTTCTTTCCCCTTCTTTGTTTCTT 60.164 40.000 0.00 0.00 0.00 2.52
2985 8708 5.852282 TCTTTCCCCTTCTTTGTTTCTTG 57.148 39.130 0.00 0.00 0.00 3.02
2986 8709 4.099419 TCTTTCCCCTTCTTTGTTTCTTGC 59.901 41.667 0.00 0.00 0.00 4.01
2987 8710 2.316108 TCCCCTTCTTTGTTTCTTGCC 58.684 47.619 0.00 0.00 0.00 4.52
2988 8711 1.344438 CCCCTTCTTTGTTTCTTGCCC 59.656 52.381 0.00 0.00 0.00 5.36
2989 8712 1.344438 CCCTTCTTTGTTTCTTGCCCC 59.656 52.381 0.00 0.00 0.00 5.80
2990 8713 2.319844 CCTTCTTTGTTTCTTGCCCCT 58.680 47.619 0.00 0.00 0.00 4.79
2991 8714 2.036346 CCTTCTTTGTTTCTTGCCCCTG 59.964 50.000 0.00 0.00 0.00 4.45
2992 8715 1.039856 TCTTTGTTTCTTGCCCCTGC 58.960 50.000 0.00 0.00 38.26 4.85
2993 8716 0.033920 CTTTGTTTCTTGCCCCTGCC 59.966 55.000 0.00 0.00 36.33 4.85
2994 8717 0.689080 TTTGTTTCTTGCCCCTGCCA 60.689 50.000 0.00 0.00 36.33 4.92
2995 8718 0.471591 TTGTTTCTTGCCCCTGCCAT 60.472 50.000 0.00 0.00 36.33 4.40
2996 8719 1.186917 TGTTTCTTGCCCCTGCCATG 61.187 55.000 0.00 0.00 36.33 3.66
2997 8720 1.610086 TTTCTTGCCCCTGCCATGG 60.610 57.895 7.63 7.63 36.33 3.66
3009 8732 2.442643 CCATGGCGCCCCTCAATT 60.443 61.111 26.77 0.00 0.00 2.32
3010 8733 2.059786 CCATGGCGCCCCTCAATTT 61.060 57.895 26.77 0.00 0.00 1.82
3011 8734 1.142314 CATGGCGCCCCTCAATTTG 59.858 57.895 26.77 4.72 0.00 2.32
3012 8735 2.724273 ATGGCGCCCCTCAATTTGC 61.724 57.895 26.77 0.00 0.00 3.68
3013 8736 4.147449 GGCGCCCCTCAATTTGCC 62.147 66.667 18.11 0.00 35.04 4.52
3014 8737 4.147449 GCGCCCCTCAATTTGCCC 62.147 66.667 0.00 0.00 0.00 5.36
3015 8738 3.460868 CGCCCCTCAATTTGCCCC 61.461 66.667 0.00 0.00 0.00 5.80
3016 8739 2.039462 GCCCCTCAATTTGCCCCT 59.961 61.111 0.00 0.00 0.00 4.79
3017 8740 2.060383 GCCCCTCAATTTGCCCCTC 61.060 63.158 0.00 0.00 0.00 4.30
3018 8741 1.381735 CCCCTCAATTTGCCCCTCC 60.382 63.158 0.00 0.00 0.00 4.30
3019 8742 1.381735 CCCTCAATTTGCCCCTCCC 60.382 63.158 0.00 0.00 0.00 4.30
3020 8743 1.699752 CCTCAATTTGCCCCTCCCT 59.300 57.895 0.00 0.00 0.00 4.20
3021 8744 0.396278 CCTCAATTTGCCCCTCCCTC 60.396 60.000 0.00 0.00 0.00 4.30
3022 8745 0.627986 CTCAATTTGCCCCTCCCTCT 59.372 55.000 0.00 0.00 0.00 3.69
3023 8746 0.625849 TCAATTTGCCCCTCCCTCTC 59.374 55.000 0.00 0.00 0.00 3.20
3024 8747 0.396278 CAATTTGCCCCTCCCTCTCC 60.396 60.000 0.00 0.00 0.00 3.71
3025 8748 1.584717 AATTTGCCCCTCCCTCTCCC 61.585 60.000 0.00 0.00 0.00 4.30
3026 8749 4.760220 TTGCCCCTCCCTCTCCCC 62.760 72.222 0.00 0.00 0.00 4.81
3029 8752 3.700350 CCCCTCCCTCTCCCCACT 61.700 72.222 0.00 0.00 0.00 4.00
3030 8753 2.041405 CCCTCCCTCTCCCCACTC 60.041 72.222 0.00 0.00 0.00 3.51
3031 8754 2.780693 CCTCCCTCTCCCCACTCA 59.219 66.667 0.00 0.00 0.00 3.41
3032 8755 1.081092 CCTCCCTCTCCCCACTCAA 59.919 63.158 0.00 0.00 0.00 3.02
3033 8756 0.980231 CCTCCCTCTCCCCACTCAAG 60.980 65.000 0.00 0.00 0.00 3.02
3034 8757 0.252467 CTCCCTCTCCCCACTCAAGT 60.252 60.000 0.00 0.00 0.00 3.16
3035 8758 0.545309 TCCCTCTCCCCACTCAAGTG 60.545 60.000 3.08 3.08 45.23 3.16
3036 8759 0.838122 CCCTCTCCCCACTCAAGTGT 60.838 60.000 9.19 0.00 44.21 3.55
3037 8760 1.059913 CCTCTCCCCACTCAAGTGTT 58.940 55.000 9.19 0.00 44.21 3.32
3038 8761 1.271054 CCTCTCCCCACTCAAGTGTTG 60.271 57.143 9.19 0.47 44.21 3.33
3039 8762 1.417890 CTCTCCCCACTCAAGTGTTGT 59.582 52.381 9.19 0.00 44.21 3.32
3040 8763 1.140852 TCTCCCCACTCAAGTGTTGTG 59.859 52.381 9.19 0.00 44.21 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.131776 ACCCTCGGTTTGTTTGTTCA 57.868 45.000 0.00 0.00 27.29 3.18
25 26 4.635833 TTTACCCTCGGTTTGTTTGTTC 57.364 40.909 0.00 0.00 37.09 3.18
26 27 4.202172 CCATTTACCCTCGGTTTGTTTGTT 60.202 41.667 0.00 0.00 37.09 2.83
28 29 3.570550 TCCATTTACCCTCGGTTTGTTTG 59.429 43.478 0.00 0.00 37.09 2.93
47 48 3.495276 CCATCTCTCTACTAGCTCGTCCA 60.495 52.174 0.00 0.00 0.00 4.02
77 78 2.158971 CCTCCCTCTCTTTTAGCTCAGC 60.159 54.545 0.00 0.00 0.00 4.26
152 3834 3.873781 CGGAAGCTCATTACCCCAA 57.126 52.632 0.00 0.00 0.00 4.12
209 3894 5.756195 TCTTTGGGCTGATGAATATTTCG 57.244 39.130 0.00 0.00 0.00 3.46
210 3895 7.148018 TGTCTTCTTTGGGCTGATGAATATTTC 60.148 37.037 0.00 0.00 0.00 2.17
214 3899 5.178096 TGTCTTCTTTGGGCTGATGAATA 57.822 39.130 0.00 0.00 0.00 1.75
215 3900 4.038271 TGTCTTCTTTGGGCTGATGAAT 57.962 40.909 0.00 0.00 0.00 2.57
216 3901 3.507162 TGTCTTCTTTGGGCTGATGAA 57.493 42.857 0.00 0.00 0.00 2.57
218 3903 2.886523 TGTTGTCTTCTTTGGGCTGATG 59.113 45.455 0.00 0.00 0.00 3.07
219 3904 2.887152 GTGTTGTCTTCTTTGGGCTGAT 59.113 45.455 0.00 0.00 0.00 2.90
220 3905 2.297701 GTGTTGTCTTCTTTGGGCTGA 58.702 47.619 0.00 0.00 0.00 4.26
221 3906 1.338020 GGTGTTGTCTTCTTTGGGCTG 59.662 52.381 0.00 0.00 0.00 4.85
222 3907 1.692411 GGTGTTGTCTTCTTTGGGCT 58.308 50.000 0.00 0.00 0.00 5.19
223 3908 0.673985 GGGTGTTGTCTTCTTTGGGC 59.326 55.000 0.00 0.00 0.00 5.36
225 3910 4.099266 TGATTTGGGTGTTGTCTTCTTTGG 59.901 41.667 0.00 0.00 0.00 3.28
226 3911 5.261209 TGATTTGGGTGTTGTCTTCTTTG 57.739 39.130 0.00 0.00 0.00 2.77
230 3915 4.338118 TCAGTTGATTTGGGTGTTGTCTTC 59.662 41.667 0.00 0.00 0.00 2.87
233 3918 3.243401 GGTCAGTTGATTTGGGTGTTGTC 60.243 47.826 0.00 0.00 0.00 3.18
241 3978 8.443953 TTTTAAATTTGGGTCAGTTGATTTGG 57.556 30.769 0.00 0.00 0.00 3.28
293 4031 6.530120 TCAAGTGCAGAAACCTAAATCACTA 58.470 36.000 0.00 0.00 33.53 2.74
303 4041 5.444663 AGAAAATCTCAAGTGCAGAAACC 57.555 39.130 0.00 0.00 0.00 3.27
436 5059 2.094182 GGACGAGCTGGTTCTGTCATTA 60.094 50.000 1.83 0.00 0.00 1.90
460 5083 0.663153 GTGAAGTTTCGGCAGCTGTT 59.337 50.000 16.64 0.00 0.00 3.16
465 5088 1.393539 CGGTATGTGAAGTTTCGGCAG 59.606 52.381 0.00 0.00 0.00 4.85
467 5090 0.725117 CCGGTATGTGAAGTTTCGGC 59.275 55.000 0.00 0.00 0.00 5.54
469 5092 2.094390 TCCTCCGGTATGTGAAGTTTCG 60.094 50.000 0.00 0.00 0.00 3.46
523 5147 9.434420 ACTACAGAGAAGAAGAAGAAAATCATG 57.566 33.333 0.00 0.00 0.00 3.07
525 5149 7.386299 GCACTACAGAGAAGAAGAAGAAAATCA 59.614 37.037 0.00 0.00 0.00 2.57
526 5150 7.148490 GGCACTACAGAGAAGAAGAAGAAAATC 60.148 40.741 0.00 0.00 0.00 2.17
527 5151 6.652900 GGCACTACAGAGAAGAAGAAGAAAAT 59.347 38.462 0.00 0.00 0.00 1.82
532 5156 4.527509 TGGCACTACAGAGAAGAAGAAG 57.472 45.455 0.00 0.00 0.00 2.85
533 5157 6.577103 CATATGGCACTACAGAGAAGAAGAA 58.423 40.000 0.00 0.00 0.00 2.52
534 5158 5.452496 GCATATGGCACTACAGAGAAGAAGA 60.452 44.000 4.56 0.00 43.97 2.87
535 5159 4.749099 GCATATGGCACTACAGAGAAGAAG 59.251 45.833 4.56 0.00 43.97 2.85
537 5161 4.327982 GCATATGGCACTACAGAGAAGA 57.672 45.455 4.56 0.00 43.97 2.87
555 5179 0.249996 GCCCTGTGTTTTGCAAGCAT 60.250 50.000 0.00 0.00 0.00 3.79
559 5183 0.392336 GATGGCCCTGTGTTTTGCAA 59.608 50.000 0.00 0.00 0.00 4.08
594 5238 1.904287 TGCAACGGCTCCTAATTTGT 58.096 45.000 0.00 0.00 41.91 2.83
606 5250 0.378257 CAGATTTCGGGATGCAACGG 59.622 55.000 8.60 1.70 0.00 4.44
607 5251 0.248215 GCAGATTTCGGGATGCAACG 60.248 55.000 0.00 0.00 38.54 4.10
617 5261 1.840741 CGAGACGTGTAGCAGATTTCG 59.159 52.381 0.00 0.00 0.00 3.46
628 5272 5.004440 CACATTAAAATCGATCGAGACGTGT 59.996 40.000 23.84 17.96 0.00 4.49
911 5617 1.207791 TGATGAGGAGGAGAAAGCCC 58.792 55.000 0.00 0.00 0.00 5.19
912 5618 2.637947 GTTGATGAGGAGGAGAAAGCC 58.362 52.381 0.00 0.00 0.00 4.35
945 5659 3.702045 ACCAGCTAGCTAGGAACAACTAG 59.298 47.826 28.87 10.67 42.63 2.57
1009 5744 3.838271 GATCGCCAGCACCGAGGA 61.838 66.667 0.00 0.00 38.20 3.71
1010 5745 4.899239 GGATCGCCAGCACCGAGG 62.899 72.222 0.00 0.00 38.20 4.63
1011 5746 3.842923 AGGATCGCCAGCACCGAG 61.843 66.667 0.00 0.00 38.20 4.63
1034 5769 4.988598 CAAGGGCACACGAGGCGT 62.989 66.667 0.00 0.00 42.36 5.68
1098 5833 2.988010 TGTTCATGATCTTCCCTCGG 57.012 50.000 0.00 0.00 0.00 4.63
1295 6062 1.068417 TTAGGCACGCACACGAACT 59.932 52.632 0.00 0.00 43.93 3.01
1300 6067 2.196295 TTTTTGTTAGGCACGCACAC 57.804 45.000 0.00 0.00 0.00 3.82
1388 6156 0.770499 TGACATTGCCCAGGAACTCA 59.230 50.000 0.00 0.00 34.60 3.41
1546 6314 2.182904 AAACGGCGTTCAACAAACTC 57.817 45.000 26.96 0.00 35.59 3.01
1580 6367 1.153086 GTCCATCCGCTCCTGCATT 60.153 57.895 0.00 0.00 39.64 3.56
1581 6368 2.068821 AGTCCATCCGCTCCTGCAT 61.069 57.895 0.00 0.00 39.64 3.96
1591 6403 1.017387 GCAAATCGGTCAGTCCATCC 58.983 55.000 0.00 0.00 35.57 3.51
1610 6426 4.496341 CCATGAAGCTGCATTTAAGTACGG 60.496 45.833 3.72 0.00 0.00 4.02
1611 6427 4.094887 ACCATGAAGCTGCATTTAAGTACG 59.905 41.667 3.72 0.00 0.00 3.67
1752 6576 4.070552 GTCTTGACGCGGCCTCCT 62.071 66.667 10.82 0.00 0.00 3.69
2064 6924 1.400530 CCCTATCTCCGGCCGTCTTT 61.401 60.000 26.12 8.79 0.00 2.52
2104 6968 6.270000 AGTCACCAATCCTTATTGATATCGGA 59.730 38.462 0.00 0.00 44.50 4.55
2126 6994 4.434520 GCTACTTTACACATCTCCCAGTC 58.565 47.826 0.00 0.00 0.00 3.51
2128 6996 3.738281 CGGCTACTTTACACATCTCCCAG 60.738 52.174 0.00 0.00 0.00 4.45
2129 6997 2.167693 CGGCTACTTTACACATCTCCCA 59.832 50.000 0.00 0.00 0.00 4.37
2132 7000 3.187700 CACCGGCTACTTTACACATCTC 58.812 50.000 0.00 0.00 0.00 2.75
2134 7002 2.277084 CCACCGGCTACTTTACACATC 58.723 52.381 0.00 0.00 0.00 3.06
2135 7003 1.626825 ACCACCGGCTACTTTACACAT 59.373 47.619 0.00 0.00 0.00 3.21
2169 7039 2.084546 AGAAGAACTGGGCGTAAATGC 58.915 47.619 0.00 0.00 0.00 3.56
2237 7109 4.672587 AGCATACAGGTGATGAACGTAT 57.327 40.909 0.00 0.00 0.00 3.06
2241 7927 2.611292 GAGCAGCATACAGGTGATGAAC 59.389 50.000 0.00 0.00 45.58 3.18
2272 7958 5.393027 GGACAAATATGACGCTGTTCCAAAT 60.393 40.000 0.00 0.00 0.00 2.32
2276 7962 3.270877 AGGACAAATATGACGCTGTTCC 58.729 45.455 0.00 0.00 0.00 3.62
2277 7963 4.946784 AAGGACAAATATGACGCTGTTC 57.053 40.909 0.00 0.00 0.00 3.18
2280 7966 5.050091 GGATGTAAGGACAAATATGACGCTG 60.050 44.000 0.00 0.00 39.59 5.18
2281 7967 5.057149 GGATGTAAGGACAAATATGACGCT 58.943 41.667 0.00 0.00 39.59 5.07
2282 7968 5.057149 AGGATGTAAGGACAAATATGACGC 58.943 41.667 0.00 0.00 39.59 5.19
2283 7969 7.096189 CGTAAGGATGTAAGGACAAATATGACG 60.096 40.741 0.00 0.00 39.59 4.35
2284 7970 7.709613 ACGTAAGGATGTAAGGACAAATATGAC 59.290 37.037 0.00 0.00 46.39 3.06
2285 7971 7.788026 ACGTAAGGATGTAAGGACAAATATGA 58.212 34.615 0.00 0.00 46.39 2.15
2286 7972 8.975439 GTACGTAAGGATGTAAGGACAAATATG 58.025 37.037 0.00 0.00 46.39 1.78
2287 7973 7.864379 CGTACGTAAGGATGTAAGGACAAATAT 59.136 37.037 7.22 0.00 46.39 1.28
2289 7975 6.038356 CGTACGTAAGGATGTAAGGACAAAT 58.962 40.000 7.22 0.00 46.39 2.32
2291 7977 4.985413 CGTACGTAAGGATGTAAGGACAA 58.015 43.478 7.22 0.00 46.39 3.18
2292 7978 4.621068 CGTACGTAAGGATGTAAGGACA 57.379 45.455 7.22 0.00 46.39 4.02
2300 7986 1.898938 TTCGCACGTACGTAAGGATG 58.101 50.000 22.34 8.82 45.09 3.51
2301 7987 2.634982 TTTCGCACGTACGTAAGGAT 57.365 45.000 22.34 0.00 46.39 3.24
2302 7988 2.634982 ATTTCGCACGTACGTAAGGA 57.365 45.000 22.34 15.11 46.39 3.36
2303 7989 5.385314 CGTATTATTTCGCACGTACGTAAGG 60.385 44.000 22.34 12.97 46.39 2.69
2304 7990 5.385314 CCGTATTATTTCGCACGTACGTAAG 60.385 44.000 22.34 17.39 34.71 2.34
2305 7991 4.436200 CCGTATTATTTCGCACGTACGTAA 59.564 41.667 22.34 12.30 34.71 3.18
2306 7992 3.965594 CCGTATTATTTCGCACGTACGTA 59.034 43.478 22.34 5.28 34.71 3.57
2307 7993 2.783284 CCGTATTATTTCGCACGTACGT 59.217 45.455 16.72 16.72 34.71 3.57
2308 7994 2.407609 GCCGTATTATTTCGCACGTACG 60.408 50.000 15.01 15.01 35.86 3.67
2309 7995 2.097250 GGCCGTATTATTTCGCACGTAC 60.097 50.000 0.00 0.00 32.66 3.67
2310 7996 2.126467 GGCCGTATTATTTCGCACGTA 58.874 47.619 0.00 0.00 32.66 3.57
2311 7997 0.932399 GGCCGTATTATTTCGCACGT 59.068 50.000 0.00 0.00 32.66 4.49
2312 7998 0.233848 GGGCCGTATTATTTCGCACG 59.766 55.000 0.00 0.00 0.00 5.34
2313 7999 1.589803 AGGGCCGTATTATTTCGCAC 58.410 50.000 0.00 0.00 0.00 5.34
2314 8000 3.688694 ATAGGGCCGTATTATTTCGCA 57.311 42.857 12.25 0.00 0.00 5.10
2315 8001 5.366829 AAAATAGGGCCGTATTATTTCGC 57.633 39.130 26.59 0.00 0.00 4.70
2316 8002 5.178067 ACGAAAATAGGGCCGTATTATTTCG 59.822 40.000 35.50 35.50 37.98 3.46
2317 8003 6.549912 ACGAAAATAGGGCCGTATTATTTC 57.450 37.500 26.59 23.92 33.13 2.17
2318 8004 6.543100 TGAACGAAAATAGGGCCGTATTATTT 59.457 34.615 26.59 19.32 34.60 1.40
2319 8005 6.017687 GTGAACGAAAATAGGGCCGTATTATT 60.018 38.462 26.59 21.46 34.60 1.40
2320 8006 5.467735 GTGAACGAAAATAGGGCCGTATTAT 59.532 40.000 26.59 15.84 34.60 1.28
2321 8007 4.810491 GTGAACGAAAATAGGGCCGTATTA 59.190 41.667 26.59 10.11 34.60 0.98
2322 8008 3.624410 GTGAACGAAAATAGGGCCGTATT 59.376 43.478 22.17 22.17 34.60 1.89
2323 8009 3.200483 GTGAACGAAAATAGGGCCGTAT 58.800 45.455 12.25 12.25 34.60 3.06
2324 8010 2.620242 GTGAACGAAAATAGGGCCGTA 58.380 47.619 7.78 7.78 34.60 4.02
2325 8011 1.445871 GTGAACGAAAATAGGGCCGT 58.554 50.000 2.24 2.24 36.77 5.68
2326 8012 0.372334 CGTGAACGAAAATAGGGCCG 59.628 55.000 0.00 0.00 43.02 6.13
2327 8013 1.729284 TCGTGAACGAAAATAGGGCC 58.271 50.000 2.48 0.00 46.30 5.80
2376 8063 0.964860 TGTGCCAATCCATTCGTGGG 60.965 55.000 0.00 0.00 32.71 4.61
2406 8093 4.157656 CCCAATGGACGAAGCAGAATAAAA 59.842 41.667 0.00 0.00 0.00 1.52
2419 8107 2.888534 CGGCGTACCCAATGGACG 60.889 66.667 8.89 8.89 37.86 4.79
2421 8109 3.707458 TGCGGCGTACCCAATGGA 61.707 61.111 9.37 0.00 34.81 3.41
2439 8127 1.403249 CCCTTCACCTTACACGTACCG 60.403 57.143 0.00 0.00 0.00 4.02
2666 8389 3.049912 GGCCAGTTTCGTGATTTTTCAC 58.950 45.455 0.00 0.00 37.27 3.18
2667 8390 2.035321 GGGCCAGTTTCGTGATTTTTCA 59.965 45.455 4.39 0.00 0.00 2.69
2668 8391 2.296190 AGGGCCAGTTTCGTGATTTTTC 59.704 45.455 6.18 0.00 0.00 2.29
2669 8392 2.316108 AGGGCCAGTTTCGTGATTTTT 58.684 42.857 6.18 0.00 0.00 1.94
2670 8393 1.995376 AGGGCCAGTTTCGTGATTTT 58.005 45.000 6.18 0.00 0.00 1.82
2671 8394 1.995376 AAGGGCCAGTTTCGTGATTT 58.005 45.000 6.18 0.00 0.00 2.17
2672 8395 1.613437 CAAAGGGCCAGTTTCGTGATT 59.387 47.619 6.18 0.00 0.00 2.57
2673 8396 1.247567 CAAAGGGCCAGTTTCGTGAT 58.752 50.000 6.18 0.00 0.00 3.06
2674 8397 0.821711 CCAAAGGGCCAGTTTCGTGA 60.822 55.000 6.18 0.00 0.00 4.35
2675 8398 1.659794 CCAAAGGGCCAGTTTCGTG 59.340 57.895 6.18 0.00 0.00 4.35
2676 8399 4.174305 CCAAAGGGCCAGTTTCGT 57.826 55.556 6.18 0.00 0.00 3.85
2689 8412 1.189752 TGTGCTGAACTTTGGCCAAA 58.810 45.000 28.65 28.65 0.00 3.28
2690 8413 1.189752 TTGTGCTGAACTTTGGCCAA 58.810 45.000 16.05 16.05 0.00 4.52
2691 8414 1.189752 TTTGTGCTGAACTTTGGCCA 58.810 45.000 0.00 0.00 0.00 5.36
2692 8415 2.307934 TTTTGTGCTGAACTTTGGCC 57.692 45.000 0.00 0.00 0.00 5.36
2693 8416 2.545106 CCATTTTGTGCTGAACTTTGGC 59.455 45.455 0.00 0.00 0.00 4.52
2694 8417 4.057406 TCCATTTTGTGCTGAACTTTGG 57.943 40.909 0.00 0.00 0.00 3.28
2695 8418 4.687483 GGATCCATTTTGTGCTGAACTTTG 59.313 41.667 6.95 0.00 0.00 2.77
2696 8419 4.590222 AGGATCCATTTTGTGCTGAACTTT 59.410 37.500 15.82 0.00 0.00 2.66
2697 8420 4.154942 AGGATCCATTTTGTGCTGAACTT 58.845 39.130 15.82 0.00 0.00 2.66
2698 8421 3.771216 AGGATCCATTTTGTGCTGAACT 58.229 40.909 15.82 0.00 0.00 3.01
2699 8422 4.525912 AAGGATCCATTTTGTGCTGAAC 57.474 40.909 15.82 0.00 0.00 3.18
2700 8423 4.344679 ACAAAGGATCCATTTTGTGCTGAA 59.655 37.500 24.08 0.00 43.66 3.02
2701 8424 3.896888 ACAAAGGATCCATTTTGTGCTGA 59.103 39.130 24.08 0.00 43.66 4.26
2702 8425 4.261578 ACAAAGGATCCATTTTGTGCTG 57.738 40.909 24.08 6.24 43.66 4.41
2703 8426 4.961438 AACAAAGGATCCATTTTGTGCT 57.039 36.364 24.95 12.94 44.32 4.40
2704 8427 7.489574 TTTTAACAAAGGATCCATTTTGTGC 57.510 32.000 24.95 0.00 44.32 4.57
2729 8452 3.711190 GGTAGGGCCATTCCATGATTTTT 59.289 43.478 8.35 0.00 37.17 1.94
2730 8453 3.308401 GGTAGGGCCATTCCATGATTTT 58.692 45.455 8.35 0.00 37.17 1.82
2731 8454 2.247111 TGGTAGGGCCATTCCATGATTT 59.753 45.455 12.18 0.00 43.61 2.17
2732 8455 1.858910 TGGTAGGGCCATTCCATGATT 59.141 47.619 12.18 0.00 43.61 2.57
2733 8456 1.533187 TGGTAGGGCCATTCCATGAT 58.467 50.000 12.18 0.00 43.61 2.45
2734 8457 3.035305 TGGTAGGGCCATTCCATGA 57.965 52.632 12.18 0.00 43.61 3.07
2742 8465 2.998097 GTCATGCTGGTAGGGCCA 59.002 61.111 6.18 0.00 46.95 5.36
2743 8466 2.203070 CGTCATGCTGGTAGGGCC 60.203 66.667 0.00 0.00 37.90 5.80
2744 8467 2.897350 GCGTCATGCTGGTAGGGC 60.897 66.667 0.00 0.00 41.73 5.19
2745 8468 2.203070 GGCGTCATGCTGGTAGGG 60.203 66.667 0.00 0.00 45.43 3.53
2746 8469 2.203070 GGGCGTCATGCTGGTAGG 60.203 66.667 0.00 0.00 45.43 3.18
2747 8470 2.586079 CGGGCGTCATGCTGGTAG 60.586 66.667 0.00 0.00 45.43 3.18
2748 8471 4.830765 GCGGGCGTCATGCTGGTA 62.831 66.667 0.00 0.00 45.43 3.25
2767 8490 4.943252 CTAGCATGGCGCCCCAGG 62.943 72.222 26.77 9.39 46.24 4.45
2768 8491 1.830587 TATCTAGCATGGCGCCCCAG 61.831 60.000 26.77 14.98 46.24 4.45
2770 8493 1.376037 GTATCTAGCATGGCGCCCC 60.376 63.158 26.77 12.64 44.04 5.80
2771 8494 1.376037 GGTATCTAGCATGGCGCCC 60.376 63.158 26.77 8.84 44.04 6.13
2772 8495 0.036010 ATGGTATCTAGCATGGCGCC 60.036 55.000 22.73 22.73 42.26 6.53
2773 8496 2.672961 TATGGTATCTAGCATGGCGC 57.327 50.000 11.21 0.00 43.51 6.53
2774 8497 3.679980 GTGTTATGGTATCTAGCATGGCG 59.320 47.826 11.21 0.00 43.51 5.69
2775 8498 4.899502 AGTGTTATGGTATCTAGCATGGC 58.100 43.478 11.21 5.51 43.51 4.40
2776 8499 6.162079 CAGAGTGTTATGGTATCTAGCATGG 58.838 44.000 11.21 0.00 43.51 3.66
2777 8500 6.162079 CCAGAGTGTTATGGTATCTAGCATG 58.838 44.000 11.21 0.00 43.51 4.06
2778 8501 5.841237 ACCAGAGTGTTATGGTATCTAGCAT 59.159 40.000 7.06 7.06 46.78 3.79
2779 8502 5.208890 ACCAGAGTGTTATGGTATCTAGCA 58.791 41.667 0.00 0.00 46.78 3.49
2780 8503 5.793030 ACCAGAGTGTTATGGTATCTAGC 57.207 43.478 0.00 0.00 46.78 3.42
2788 8511 2.749621 GCCTTTGACCAGAGTGTTATGG 59.250 50.000 0.00 0.00 41.58 2.74
2789 8512 2.416547 CGCCTTTGACCAGAGTGTTATG 59.583 50.000 0.00 0.00 0.00 1.90
2790 8513 2.699954 CGCCTTTGACCAGAGTGTTAT 58.300 47.619 0.00 0.00 0.00 1.89
2791 8514 1.876416 GCGCCTTTGACCAGAGTGTTA 60.876 52.381 0.00 0.00 0.00 2.41
2792 8515 1.166531 GCGCCTTTGACCAGAGTGTT 61.167 55.000 0.00 0.00 0.00 3.32
2793 8516 1.598130 GCGCCTTTGACCAGAGTGT 60.598 57.895 0.00 0.00 0.00 3.55
2794 8517 2.328099 GGCGCCTTTGACCAGAGTG 61.328 63.158 22.15 0.00 0.00 3.51
2795 8518 2.032681 GGCGCCTTTGACCAGAGT 59.967 61.111 22.15 0.00 0.00 3.24
2796 8519 1.372087 GATGGCGCCTTTGACCAGAG 61.372 60.000 29.70 0.00 36.78 3.35
2797 8520 1.377202 GATGGCGCCTTTGACCAGA 60.377 57.895 29.70 3.35 36.78 3.86
2798 8521 2.409870 GGATGGCGCCTTTGACCAG 61.410 63.158 29.70 0.00 36.78 4.00
2799 8522 2.361104 GGATGGCGCCTTTGACCA 60.361 61.111 29.70 5.17 37.99 4.02
2800 8523 3.508840 CGGATGGCGCCTTTGACC 61.509 66.667 29.70 20.37 0.00 4.02
2801 8524 4.179579 GCGGATGGCGCCTTTGAC 62.180 66.667 29.70 14.34 0.00 3.18
2833 8556 3.322466 AAGTCCAGGCCGAGGTGG 61.322 66.667 15.72 9.62 42.50 4.61
2834 8557 2.046892 CAAGTCCAGGCCGAGGTG 60.047 66.667 15.72 4.87 0.00 4.00
2835 8558 3.322466 CCAAGTCCAGGCCGAGGT 61.322 66.667 15.72 0.00 0.00 3.85
2836 8559 4.101448 CCCAAGTCCAGGCCGAGG 62.101 72.222 10.74 10.74 0.00 4.63
2837 8560 4.785453 GCCCAAGTCCAGGCCGAG 62.785 72.222 0.00 0.00 43.76 4.63
2845 8568 2.438434 CGTCATGGGCCCAAGTCC 60.438 66.667 32.58 18.10 38.73 3.85
2846 8569 3.134127 GCGTCATGGGCCCAAGTC 61.134 66.667 32.58 21.74 0.00 3.01
2847 8570 4.740822 GGCGTCATGGGCCCAAGT 62.741 66.667 32.58 11.29 44.97 3.16
2869 8592 3.341629 AGACCATGGCACCCTGGG 61.342 66.667 13.04 12.28 36.82 4.45
2870 8593 1.561769 TACAGACCATGGCACCCTGG 61.562 60.000 13.04 9.25 38.55 4.45
2871 8594 0.392998 GTACAGACCATGGCACCCTG 60.393 60.000 13.04 15.84 0.00 4.45
2872 8595 1.562672 GGTACAGACCATGGCACCCT 61.563 60.000 13.04 0.80 46.12 4.34
2873 8596 1.077716 GGTACAGACCATGGCACCC 60.078 63.158 13.04 0.00 46.12 4.61
2874 8597 4.637771 GGTACAGACCATGGCACC 57.362 61.111 13.04 7.94 46.12 5.01
2883 8606 2.126189 GGGCGTCGTGGTACAGAC 60.126 66.667 0.00 0.21 41.80 3.51
2884 8607 3.376078 GGGGCGTCGTGGTACAGA 61.376 66.667 0.00 0.00 41.80 3.41
2885 8608 4.789075 CGGGGCGTCGTGGTACAG 62.789 72.222 0.00 0.00 41.80 2.74
2910 8633 2.516225 GGTGAAGGGGTATGGCGC 60.516 66.667 0.00 0.00 0.00 6.53
2911 8634 0.762418 TATGGTGAAGGGGTATGGCG 59.238 55.000 0.00 0.00 0.00 5.69
2912 8635 3.157087 CAATATGGTGAAGGGGTATGGC 58.843 50.000 0.00 0.00 0.00 4.40
2913 8636 3.157087 GCAATATGGTGAAGGGGTATGG 58.843 50.000 0.00 0.00 0.00 2.74
2914 8637 4.104383 AGCAATATGGTGAAGGGGTATG 57.896 45.455 0.00 0.00 0.00 2.39
2925 8648 4.885426 CTCGGGCAGCAATATGGT 57.115 55.556 0.00 0.00 0.00 3.55
2949 8672 1.729517 GGAAAGAACGAAGCAGAGAGC 59.270 52.381 0.00 0.00 46.19 4.09
2950 8673 2.342179 GGGAAAGAACGAAGCAGAGAG 58.658 52.381 0.00 0.00 0.00 3.20
2951 8674 1.002087 GGGGAAAGAACGAAGCAGAGA 59.998 52.381 0.00 0.00 0.00 3.10
2952 8675 1.002544 AGGGGAAAGAACGAAGCAGAG 59.997 52.381 0.00 0.00 0.00 3.35
2953 8676 1.056660 AGGGGAAAGAACGAAGCAGA 58.943 50.000 0.00 0.00 0.00 4.26
2954 8677 1.807142 GAAGGGGAAAGAACGAAGCAG 59.193 52.381 0.00 0.00 0.00 4.24
2955 8678 1.420138 AGAAGGGGAAAGAACGAAGCA 59.580 47.619 0.00 0.00 0.00 3.91
2956 8679 2.186532 AGAAGGGGAAAGAACGAAGC 57.813 50.000 0.00 0.00 0.00 3.86
2957 8680 3.883489 ACAAAGAAGGGGAAAGAACGAAG 59.117 43.478 0.00 0.00 0.00 3.79
2958 8681 3.893521 ACAAAGAAGGGGAAAGAACGAA 58.106 40.909 0.00 0.00 0.00 3.85
2959 8682 3.570912 ACAAAGAAGGGGAAAGAACGA 57.429 42.857 0.00 0.00 0.00 3.85
2960 8683 4.338400 AGAAACAAAGAAGGGGAAAGAACG 59.662 41.667 0.00 0.00 0.00 3.95
2961 8684 5.854010 AGAAACAAAGAAGGGGAAAGAAC 57.146 39.130 0.00 0.00 0.00 3.01
2962 8685 5.395214 GCAAGAAACAAAGAAGGGGAAAGAA 60.395 40.000 0.00 0.00 0.00 2.52
2963 8686 4.099419 GCAAGAAACAAAGAAGGGGAAAGA 59.901 41.667 0.00 0.00 0.00 2.52
2964 8687 4.371786 GCAAGAAACAAAGAAGGGGAAAG 58.628 43.478 0.00 0.00 0.00 2.62
2965 8688 3.133901 GGCAAGAAACAAAGAAGGGGAAA 59.866 43.478 0.00 0.00 0.00 3.13
2966 8689 2.698274 GGCAAGAAACAAAGAAGGGGAA 59.302 45.455 0.00 0.00 0.00 3.97
2967 8690 2.316108 GGCAAGAAACAAAGAAGGGGA 58.684 47.619 0.00 0.00 0.00 4.81
2968 8691 1.344438 GGGCAAGAAACAAAGAAGGGG 59.656 52.381 0.00 0.00 0.00 4.79
2969 8692 1.344438 GGGGCAAGAAACAAAGAAGGG 59.656 52.381 0.00 0.00 0.00 3.95
2970 8693 2.036346 CAGGGGCAAGAAACAAAGAAGG 59.964 50.000 0.00 0.00 0.00 3.46
2971 8694 2.546584 GCAGGGGCAAGAAACAAAGAAG 60.547 50.000 0.00 0.00 40.72 2.85
2972 8695 1.412343 GCAGGGGCAAGAAACAAAGAA 59.588 47.619 0.00 0.00 40.72 2.52
2973 8696 1.039856 GCAGGGGCAAGAAACAAAGA 58.960 50.000 0.00 0.00 40.72 2.52
2974 8697 0.033920 GGCAGGGGCAAGAAACAAAG 59.966 55.000 0.00 0.00 43.71 2.77
2975 8698 0.689080 TGGCAGGGGCAAGAAACAAA 60.689 50.000 0.00 0.00 43.71 2.83
2976 8699 0.471591 ATGGCAGGGGCAAGAAACAA 60.472 50.000 0.00 0.00 42.43 2.83
2977 8700 1.155859 ATGGCAGGGGCAAGAAACA 59.844 52.632 0.00 0.00 42.43 2.83
2978 8701 1.593265 CATGGCAGGGGCAAGAAAC 59.407 57.895 0.00 0.00 42.43 2.78
2979 8702 1.610086 CCATGGCAGGGGCAAGAAA 60.610 57.895 11.07 0.00 42.43 2.52
2980 8703 2.037687 CCATGGCAGGGGCAAGAA 59.962 61.111 11.07 0.00 42.43 2.52
2992 8715 2.059786 AAATTGAGGGGCGCCATGG 61.060 57.895 30.85 7.63 0.00 3.66
2993 8716 1.142314 CAAATTGAGGGGCGCCATG 59.858 57.895 30.85 9.36 0.00 3.66
2994 8717 2.724273 GCAAATTGAGGGGCGCCAT 61.724 57.895 30.85 17.07 0.00 4.40
2995 8718 3.381136 GCAAATTGAGGGGCGCCA 61.381 61.111 30.85 7.48 0.00 5.69
2996 8719 4.147449 GGCAAATTGAGGGGCGCC 62.147 66.667 21.18 21.18 0.00 6.53
2997 8720 4.147449 GGGCAAATTGAGGGGCGC 62.147 66.667 0.00 0.00 0.00 6.53
2998 8721 3.460868 GGGGCAAATTGAGGGGCG 61.461 66.667 0.00 0.00 0.00 6.13
2999 8722 2.039462 AGGGGCAAATTGAGGGGC 59.961 61.111 0.00 0.00 0.00 5.80
3000 8723 1.381735 GGAGGGGCAAATTGAGGGG 60.382 63.158 0.00 0.00 0.00 4.79
3001 8724 1.381735 GGGAGGGGCAAATTGAGGG 60.382 63.158 0.00 0.00 0.00 4.30
3002 8725 0.396278 GAGGGAGGGGCAAATTGAGG 60.396 60.000 0.00 0.00 0.00 3.86
3003 8726 0.627986 AGAGGGAGGGGCAAATTGAG 59.372 55.000 0.00 0.00 0.00 3.02
3004 8727 0.625849 GAGAGGGAGGGGCAAATTGA 59.374 55.000 0.00 0.00 0.00 2.57
3005 8728 0.396278 GGAGAGGGAGGGGCAAATTG 60.396 60.000 0.00 0.00 0.00 2.32
3006 8729 1.584717 GGGAGAGGGAGGGGCAAATT 61.585 60.000 0.00 0.00 0.00 1.82
3007 8730 2.009302 GGGAGAGGGAGGGGCAAAT 61.009 63.158 0.00 0.00 0.00 2.32
3008 8731 2.614013 GGGAGAGGGAGGGGCAAA 60.614 66.667 0.00 0.00 0.00 3.68
3009 8732 4.760220 GGGGAGAGGGAGGGGCAA 62.760 72.222 0.00 0.00 0.00 4.52
3012 8735 3.700350 AGTGGGGAGAGGGAGGGG 61.700 72.222 0.00 0.00 0.00 4.79
3013 8736 2.041405 GAGTGGGGAGAGGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
3014 8737 0.980231 CTTGAGTGGGGAGAGGGAGG 60.980 65.000 0.00 0.00 0.00 4.30
3015 8738 0.252467 ACTTGAGTGGGGAGAGGGAG 60.252 60.000 0.00 0.00 0.00 4.30
3016 8739 0.545309 CACTTGAGTGGGGAGAGGGA 60.545 60.000 3.19 0.00 42.10 4.20
3017 8740 1.986413 CACTTGAGTGGGGAGAGGG 59.014 63.158 3.19 0.00 42.10 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.