Multiple sequence alignment - TraesCS7D01G418700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G418700 chr7D 100.000 3292 0 0 1 3292 538334368 538331077 0.000000e+00 6080.0
1 TraesCS7D01G418700 chr7D 89.442 985 58 29 1204 2177 538140694 538139745 0.000000e+00 1201.0
2 TraesCS7D01G418700 chr7D 89.337 966 78 15 1204 2166 538586372 538587315 0.000000e+00 1190.0
3 TraesCS7D01G418700 chr7D 85.846 1088 107 18 1209 2286 538211987 538210937 0.000000e+00 1112.0
4 TraesCS7D01G418700 chr7D 87.373 982 71 27 1204 2158 538602776 538603731 0.000000e+00 1077.0
5 TraesCS7D01G418700 chr7D 85.932 853 51 27 372 1213 538585539 538586333 0.000000e+00 846.0
6 TraesCS7D01G418700 chr7D 91.503 459 29 4 1700 2158 538595387 538595835 1.000000e-174 623.0
7 TraesCS7D01G418700 chr7D 79.843 764 80 40 472 1213 538141444 538140733 1.060000e-134 490.0
8 TraesCS7D01G418700 chr7D 89.736 341 24 7 2940 3271 538167327 538166989 3.040000e-115 425.0
9 TraesCS7D01G418700 chr7D 87.458 295 29 7 2623 2910 538168590 538168297 1.890000e-87 333.0
10 TraesCS7D01G418700 chr7D 77.152 604 66 33 471 1052 538240497 538239944 5.380000e-73 285.0
11 TraesCS7D01G418700 chr7D 79.607 407 43 24 813 1213 538661798 538662170 4.220000e-64 255.0
12 TraesCS7D01G418700 chr7D 82.292 288 30 10 932 1213 538594613 538594885 2.560000e-56 230.0
13 TraesCS7D01G418700 chr7D 83.621 116 11 4 2214 2321 538595844 538595959 5.810000e-18 102.0
14 TraesCS7D01G418700 chr7D 94.643 56 3 0 332 387 538521461 538521516 1.630000e-13 87.9
15 TraesCS7D01G418700 chr7B 90.937 982 60 15 1204 2177 581333569 581334529 0.000000e+00 1293.0
16 TraesCS7D01G418700 chr7B 86.138 1248 88 39 1204 2411 580970172 580968970 0.000000e+00 1267.0
17 TraesCS7D01G418700 chr7B 89.175 970 71 16 1209 2177 580885528 580884592 0.000000e+00 1179.0
18 TraesCS7D01G418700 chr7B 91.769 814 33 16 404 1213 580970994 580970211 0.000000e+00 1101.0
19 TraesCS7D01G418700 chr7B 90.265 452 35 7 1208 1654 581313917 581314364 1.700000e-162 582.0
20 TraesCS7D01G418700 chr7B 87.529 433 34 12 1 416 580971609 580971180 1.780000e-132 483.0
21 TraesCS7D01G418700 chr7B 77.618 764 83 51 471 1213 580886269 580885573 1.850000e-102 383.0
22 TraesCS7D01G418700 chr7B 84.211 361 26 14 429 785 581306580 581306913 4.100000e-84 322.0
23 TraesCS7D01G418700 chr7B 80.184 434 28 27 782 1214 581313498 581313874 4.190000e-69 272.0
24 TraesCS7D01G418700 chr7B 84.211 285 18 14 932 1213 581333270 581333530 5.450000e-63 252.0
25 TraesCS7D01G418700 chr7B 94.643 56 3 0 332 387 581266258 581266313 1.630000e-13 87.9
26 TraesCS7D01G418700 chr7A 89.506 991 65 19 1204 2177 620171716 620172684 0.000000e+00 1218.0
27 TraesCS7D01G418700 chr7A 89.409 982 74 16 1204 2177 620201624 620202583 0.000000e+00 1210.0
28 TraesCS7D01G418700 chr7A 87.018 986 72 33 1204 2177 619166837 619165896 0.000000e+00 1061.0
29 TraesCS7D01G418700 chr7A 91.815 562 46 0 1725 2286 619633430 619632869 0.000000e+00 784.0
30 TraesCS7D01G418700 chr7A 88.792 571 28 15 646 1213 619906720 619907257 0.000000e+00 667.0
31 TraesCS7D01G418700 chr7A 94.050 437 25 1 1204 1639 619633902 619633466 0.000000e+00 662.0
32 TraesCS7D01G418700 chr7A 88.616 571 29 15 646 1213 619634478 619633941 0.000000e+00 662.0
33 TraesCS7D01G418700 chr7A 94.050 437 25 1 1204 1639 619907296 619907732 0.000000e+00 662.0
34 TraesCS7D01G418700 chr7A 90.554 487 29 9 1698 2177 619576067 619575591 2.160000e-176 628.0
35 TraesCS7D01G418700 chr7A 91.422 443 34 1 1208 1646 619576525 619576083 3.630000e-169 604.0
36 TraesCS7D01G418700 chr7A 89.583 432 32 10 1 430 619635045 619634625 1.340000e-148 536.0
37 TraesCS7D01G418700 chr7A 80.313 767 70 41 471 1213 619167585 619166876 3.790000e-139 505.0
38 TraesCS7D01G418700 chr7A 83.779 561 51 22 659 1213 619577095 619576569 2.280000e-136 496.0
39 TraesCS7D01G418700 chr7A 90.181 387 27 5 1791 2176 619291776 619291400 8.210000e-136 494.0
40 TraesCS7D01G418700 chr7A 91.083 314 27 1 1341 1654 620187020 620187332 1.090000e-114 424.0
41 TraesCS7D01G418700 chr7A 97.260 146 3 1 475 619 619634620 619634475 2.540000e-61 246.0
42 TraesCS7D01G418700 chr7A 95.973 149 5 1 472 619 619906575 619906723 1.180000e-59 241.0
43 TraesCS7D01G418700 chr7A 92.683 82 6 0 349 430 619906492 619906573 5.770000e-23 119.0
44 TraesCS7D01G418700 chr3D 92.500 40 2 1 267 306 61570527 61570565 4.590000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G418700 chr7D 538331077 538334368 3291 True 6080.000000 6080 100.000000 1 3292 1 chr7D.!!$R3 3291
1 TraesCS7D01G418700 chr7D 538210937 538211987 1050 True 1112.000000 1112 85.846000 1209 2286 1 chr7D.!!$R1 1077
2 TraesCS7D01G418700 chr7D 538602776 538603731 955 False 1077.000000 1077 87.373000 1204 2158 1 chr7D.!!$F2 954
3 TraesCS7D01G418700 chr7D 538585539 538587315 1776 False 1018.000000 1190 87.634500 372 2166 2 chr7D.!!$F4 1794
4 TraesCS7D01G418700 chr7D 538139745 538141444 1699 True 845.500000 1201 84.642500 472 2177 2 chr7D.!!$R4 1705
5 TraesCS7D01G418700 chr7D 538166989 538168590 1601 True 379.000000 425 88.597000 2623 3271 2 chr7D.!!$R5 648
6 TraesCS7D01G418700 chr7D 538594613 538595959 1346 False 318.333333 623 85.805333 932 2321 3 chr7D.!!$F5 1389
7 TraesCS7D01G418700 chr7D 538239944 538240497 553 True 285.000000 285 77.152000 471 1052 1 chr7D.!!$R2 581
8 TraesCS7D01G418700 chr7B 580968970 580971609 2639 True 950.333333 1267 88.478667 1 2411 3 chr7B.!!$R2 2410
9 TraesCS7D01G418700 chr7B 580884592 580886269 1677 True 781.000000 1179 83.396500 471 2177 2 chr7B.!!$R1 1706
10 TraesCS7D01G418700 chr7B 581333270 581334529 1259 False 772.500000 1293 87.574000 932 2177 2 chr7B.!!$F4 1245
11 TraesCS7D01G418700 chr7B 581313498 581314364 866 False 427.000000 582 85.224500 782 1654 2 chr7B.!!$F3 872
12 TraesCS7D01G418700 chr7A 620171716 620172684 968 False 1218.000000 1218 89.506000 1204 2177 1 chr7A.!!$F1 973
13 TraesCS7D01G418700 chr7A 620201624 620202583 959 False 1210.000000 1210 89.409000 1204 2177 1 chr7A.!!$F3 973
14 TraesCS7D01G418700 chr7A 619165896 619167585 1689 True 783.000000 1061 83.665500 471 2177 2 chr7A.!!$R2 1706
15 TraesCS7D01G418700 chr7A 619632869 619635045 2176 True 578.000000 784 92.264800 1 2286 5 chr7A.!!$R4 2285
16 TraesCS7D01G418700 chr7A 619575591 619577095 1504 True 576.000000 628 88.585000 659 2177 3 chr7A.!!$R3 1518
17 TraesCS7D01G418700 chr7A 619906492 619907732 1240 False 422.250000 667 92.874500 349 1639 4 chr7A.!!$F4 1290

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 388 1.014352 ATCGATTGCTACGCCCAAAC 58.986 50.0 0.0 0.0 0.00 2.93 F
1382 1770 0.824109 GGTCTCCATCGGATGACACA 59.176 55.0 19.3 0.0 34.17 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 2069 0.248702 GCCGGCGTTCTTGAAACAAA 60.249 50.0 12.58 0.00 0.00 2.83 R
2587 3078 0.322648 TGGCACTGACCAGACAGATG 59.677 55.0 3.76 1.04 40.63 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 130 8.583810 AAGCATTTTGTCATATGATTGTATGC 57.416 30.769 23.83 23.83 35.98 3.14
133 137 4.389992 GTCATATGATTGTATGCGACCCTG 59.610 45.833 9.02 0.00 33.15 4.45
245 249 4.439426 CGTCAGAGGATTAGTGACCAGAAG 60.439 50.000 0.00 0.00 37.85 2.85
251 255 3.961408 GGATTAGTGACCAGAAGAGCCTA 59.039 47.826 0.00 0.00 0.00 3.93
291 295 2.607771 CCGTCCCAAATTGCTTGTCTTG 60.608 50.000 0.00 0.00 32.65 3.02
345 360 4.081972 CGGAGGCAATACATCACTAGCTAT 60.082 45.833 0.00 0.00 0.00 2.97
347 362 4.573900 AGGCAATACATCACTAGCTATGC 58.426 43.478 0.00 0.00 0.00 3.14
370 388 1.014352 ATCGATTGCTACGCCCAAAC 58.986 50.000 0.00 0.00 0.00 2.93
455 671 3.081804 CAGCCCCGAAGACAAAATAACT 58.918 45.455 0.00 0.00 0.00 2.24
602 831 6.183361 TTTGTACTGCCATTTGGGTACAAAAT 60.183 34.615 25.61 0.00 46.88 1.82
616 845 7.106890 TGGGTACAAAATACGAAATCATCTCA 58.893 34.615 0.00 0.00 0.00 3.27
617 846 7.608376 TGGGTACAAAATACGAAATCATCTCAA 59.392 33.333 0.00 0.00 0.00 3.02
618 847 8.455682 GGGTACAAAATACGAAATCATCTCAAA 58.544 33.333 0.00 0.00 0.00 2.69
619 848 9.490663 GGTACAAAATACGAAATCATCTCAAAG 57.509 33.333 0.00 0.00 0.00 2.77
620 849 9.490663 GTACAAAATACGAAATCATCTCAAAGG 57.509 33.333 0.00 0.00 0.00 3.11
622 851 8.576442 ACAAAATACGAAATCATCTCAAAGGTT 58.424 29.630 0.00 0.00 0.00 3.50
623 852 8.853345 CAAAATACGAAATCATCTCAAAGGTTG 58.147 33.333 0.00 0.00 0.00 3.77
624 853 4.425577 ACGAAATCATCTCAAAGGTTGC 57.574 40.909 0.00 0.00 0.00 4.17
625 854 3.820467 ACGAAATCATCTCAAAGGTTGCA 59.180 39.130 0.00 0.00 0.00 4.08
626 855 4.083110 ACGAAATCATCTCAAAGGTTGCAG 60.083 41.667 0.00 0.00 0.00 4.41
627 856 3.863142 AATCATCTCAAAGGTTGCAGC 57.137 42.857 0.00 0.00 0.00 5.25
628 857 2.574006 TCATCTCAAAGGTTGCAGCT 57.426 45.000 0.00 0.00 0.00 4.24
629 858 3.701205 TCATCTCAAAGGTTGCAGCTA 57.299 42.857 0.00 0.00 0.00 3.32
630 859 3.338249 TCATCTCAAAGGTTGCAGCTAC 58.662 45.455 0.00 0.00 0.00 3.58
631 860 2.185004 TCTCAAAGGTTGCAGCTACC 57.815 50.000 17.53 17.53 35.85 3.18
633 862 2.903784 TCTCAAAGGTTGCAGCTACCTA 59.096 45.455 26.42 12.10 45.17 3.08
634 863 3.003480 CTCAAAGGTTGCAGCTACCTAC 58.997 50.000 26.42 1.49 45.17 3.18
635 864 2.370519 TCAAAGGTTGCAGCTACCTACA 59.629 45.455 26.42 12.10 45.17 2.74
636 865 2.744202 CAAAGGTTGCAGCTACCTACAG 59.256 50.000 26.42 15.96 45.17 2.74
637 866 1.938585 AGGTTGCAGCTACCTACAGA 58.061 50.000 25.22 0.00 44.11 3.41
638 867 2.472029 AGGTTGCAGCTACCTACAGAT 58.528 47.619 25.22 2.10 44.11 2.90
639 868 2.432510 AGGTTGCAGCTACCTACAGATC 59.567 50.000 25.22 0.00 44.11 2.75
640 869 2.483889 GGTTGCAGCTACCTACAGATCC 60.484 54.545 17.90 0.00 32.75 3.36
641 870 2.159179 TGCAGCTACCTACAGATCCA 57.841 50.000 0.00 0.00 0.00 3.41
642 871 2.466846 TGCAGCTACCTACAGATCCAA 58.533 47.619 0.00 0.00 0.00 3.53
643 872 2.168521 TGCAGCTACCTACAGATCCAAC 59.831 50.000 0.00 0.00 0.00 3.77
644 873 2.483889 GCAGCTACCTACAGATCCAACC 60.484 54.545 0.00 0.00 0.00 3.77
645 874 2.103263 CAGCTACCTACAGATCCAACCC 59.897 54.545 0.00 0.00 0.00 4.11
686 956 1.340889 CAAAAGCTGTTGCCTTGCCTA 59.659 47.619 3.06 0.00 40.80 3.93
828 1124 2.656646 CTACAGTGCCGTCCTGCA 59.343 61.111 0.00 0.00 39.37 4.41
830 1126 1.079197 TACAGTGCCGTCCTGCATG 60.079 57.895 0.00 0.00 44.30 4.06
836 1132 4.415150 CCGTCCTGCATGCCCTGT 62.415 66.667 16.68 0.00 0.00 4.00
837 1133 2.821366 CGTCCTGCATGCCCTGTC 60.821 66.667 16.68 1.16 0.00 3.51
838 1134 2.673523 GTCCTGCATGCCCTGTCT 59.326 61.111 16.68 0.00 0.00 3.41
839 1135 1.451028 GTCCTGCATGCCCTGTCTC 60.451 63.158 16.68 0.00 0.00 3.36
840 1136 2.124403 CCTGCATGCCCTGTCTCC 60.124 66.667 16.68 0.00 0.00 3.71
841 1137 2.677289 CCTGCATGCCCTGTCTCCT 61.677 63.158 16.68 0.00 0.00 3.69
870 1166 3.997064 CTCCTCTGGCGCCAACTCG 62.997 68.421 32.09 19.15 0.00 4.18
905 1202 2.896443 CTGGCGAACTCCTCTCCC 59.104 66.667 0.00 0.00 0.00 4.30
922 1219 2.433491 CGTTCGCCGAACCATCCA 60.433 61.111 22.97 0.00 39.14 3.41
923 1220 1.813753 CGTTCGCCGAACCATCCAT 60.814 57.895 22.97 0.00 39.14 3.41
1031 1340 3.584947 AGCTTCCATCCAGCTTTCC 57.415 52.632 0.00 0.00 45.82 3.13
1047 1356 4.101430 AGCTTTCCTCCTCATCTTCATCTC 59.899 45.833 0.00 0.00 0.00 2.75
1060 1369 7.776107 TCATCTTCATCTCCTAGTACTTGTTG 58.224 38.462 0.00 0.00 0.00 3.33
1224 1603 1.417890 CACCTGGGGCTCGATAAGATT 59.582 52.381 0.00 0.00 0.00 2.40
1305 1684 3.059982 CTCGTCCCTGGCAACTCA 58.940 61.111 0.00 0.00 37.61 3.41
1382 1770 0.824109 GGTCTCCATCGGATGACACA 59.176 55.000 19.30 0.00 34.17 3.72
1401 1816 2.218603 CAGTTGCCTAACTTGGTTCGT 58.781 47.619 0.00 0.00 44.57 3.85
1410 1825 3.945981 AACTTGGTTCGTTTTGGTGTT 57.054 38.095 0.00 0.00 0.00 3.32
1630 2045 3.436704 AGCACATCATGTAAGTTGGTTCG 59.563 43.478 0.00 0.00 0.00 3.95
1654 2069 3.732212 GCCATTGCTCAACCTTCTTTTT 58.268 40.909 0.00 0.00 33.53 1.94
1691 2116 2.225019 CGGCCATCTATTCATTCAGCAC 59.775 50.000 2.24 0.00 0.00 4.40
1695 2120 4.795268 CCATCTATTCATTCAGCACATGC 58.205 43.478 0.00 0.00 42.49 4.06
2188 2648 3.368427 CCACCGAGCAATATATCCGACAT 60.368 47.826 0.00 0.00 0.00 3.06
2205 2665 1.480137 ACATCTGCTAGCACTGGACTC 59.520 52.381 14.93 0.00 0.00 3.36
2244 2704 0.178958 AGGAAGACGGCCGGAGATAT 60.179 55.000 31.76 6.78 0.00 1.63
2328 2804 4.082136 GGTGGTAGATTCTTCTGTTCGTCT 60.082 45.833 0.00 0.00 33.17 4.18
2329 2805 4.859798 GTGGTAGATTCTTCTGTTCGTCTG 59.140 45.833 0.00 0.00 33.17 3.51
2331 2807 5.708697 TGGTAGATTCTTCTGTTCGTCTGTA 59.291 40.000 0.00 0.00 33.17 2.74
2337 2827 8.138712 AGATTCTTCTGTTCGTCTGTATAATCC 58.861 37.037 0.00 0.00 0.00 3.01
2354 2844 2.391469 CCTGCTCAGGCTCAATTCG 58.609 57.895 2.59 0.00 42.44 3.34
2358 2848 0.445436 GCTCAGGCTCAATTCGTGTG 59.555 55.000 0.00 0.00 35.22 3.82
2360 2850 2.930887 GCTCAGGCTCAATTCGTGTGTA 60.931 50.000 0.00 0.00 35.22 2.90
2361 2851 3.325870 CTCAGGCTCAATTCGTGTGTAA 58.674 45.455 0.00 0.00 0.00 2.41
2362 2852 3.935203 CTCAGGCTCAATTCGTGTGTAAT 59.065 43.478 0.00 0.00 0.00 1.89
2364 2854 4.868171 TCAGGCTCAATTCGTGTGTAATAC 59.132 41.667 0.00 0.00 0.00 1.89
2377 2867 6.804232 CGTGTGTAATACGTATATTGCTTCC 58.196 40.000 8.83 0.00 46.79 3.46
2379 2869 7.168637 CGTGTGTAATACGTATATTGCTTCCTT 59.831 37.037 8.83 0.00 46.79 3.36
2386 2877 6.663944 ACGTATATTGCTTCCTTGTTCTTC 57.336 37.500 0.00 0.00 0.00 2.87
2394 2885 3.429207 GCTTCCTTGTTCTTCGTCTGTAC 59.571 47.826 0.00 0.00 0.00 2.90
2411 2902 3.151554 TGTACGGTGCTCTCTGTTCTAA 58.848 45.455 0.00 0.00 0.00 2.10
2412 2903 3.762288 TGTACGGTGCTCTCTGTTCTAAT 59.238 43.478 0.00 0.00 0.00 1.73
2413 2904 3.963428 ACGGTGCTCTCTGTTCTAATT 57.037 42.857 0.00 0.00 0.00 1.40
2414 2905 3.589988 ACGGTGCTCTCTGTTCTAATTG 58.410 45.455 0.00 0.00 0.00 2.32
2415 2906 2.932614 CGGTGCTCTCTGTTCTAATTGG 59.067 50.000 0.00 0.00 0.00 3.16
2416 2907 3.368427 CGGTGCTCTCTGTTCTAATTGGA 60.368 47.826 0.00 0.00 0.00 3.53
2417 2908 4.579869 GGTGCTCTCTGTTCTAATTGGAA 58.420 43.478 0.00 0.00 0.00 3.53
2418 2909 4.393371 GGTGCTCTCTGTTCTAATTGGAAC 59.607 45.833 23.54 23.54 43.97 3.62
2439 2930 7.511959 GAACAGGTTCCTATTTGTCTTTCTT 57.488 36.000 0.64 0.00 33.64 2.52
2440 2931 7.898014 AACAGGTTCCTATTTGTCTTTCTTT 57.102 32.000 0.00 0.00 0.00 2.52
2441 2932 7.898014 ACAGGTTCCTATTTGTCTTTCTTTT 57.102 32.000 0.00 0.00 0.00 2.27
2442 2933 7.941919 ACAGGTTCCTATTTGTCTTTCTTTTC 58.058 34.615 0.00 0.00 0.00 2.29
2443 2934 7.559897 ACAGGTTCCTATTTGTCTTTCTTTTCA 59.440 33.333 0.00 0.00 0.00 2.69
2444 2935 8.413229 CAGGTTCCTATTTGTCTTTCTTTTCAA 58.587 33.333 0.00 0.00 0.00 2.69
2445 2936 8.414003 AGGTTCCTATTTGTCTTTCTTTTCAAC 58.586 33.333 0.00 0.00 0.00 3.18
2446 2937 7.378728 GGTTCCTATTTGTCTTTCTTTTCAACG 59.621 37.037 0.00 0.00 0.00 4.10
2447 2938 6.435428 TCCTATTTGTCTTTCTTTTCAACGC 58.565 36.000 0.00 0.00 0.00 4.84
2448 2939 6.262273 TCCTATTTGTCTTTCTTTTCAACGCT 59.738 34.615 0.00 0.00 0.00 5.07
2449 2940 6.360681 CCTATTTGTCTTTCTTTTCAACGCTG 59.639 38.462 0.00 0.00 0.00 5.18
2450 2941 4.955925 TTGTCTTTCTTTTCAACGCTGA 57.044 36.364 0.00 0.00 0.00 4.26
2451 2942 4.955925 TGTCTTTCTTTTCAACGCTGAA 57.044 36.364 0.00 0.00 39.87 3.02
2460 2951 3.313274 TTCAACGCTGAAACTTTCGAC 57.687 42.857 0.00 0.00 38.65 4.20
2461 2952 2.546778 TCAACGCTGAAACTTTCGACT 58.453 42.857 0.00 0.00 0.00 4.18
2462 2953 2.284150 TCAACGCTGAAACTTTCGACTG 59.716 45.455 0.00 0.00 0.00 3.51
2463 2954 1.217882 ACGCTGAAACTTTCGACTGG 58.782 50.000 0.00 0.00 0.00 4.00
2464 2955 1.202486 ACGCTGAAACTTTCGACTGGA 60.202 47.619 0.00 0.00 0.00 3.86
2465 2956 2.069273 CGCTGAAACTTTCGACTGGAT 58.931 47.619 0.00 0.00 0.00 3.41
2466 2957 2.159787 CGCTGAAACTTTCGACTGGATG 60.160 50.000 0.00 0.00 0.00 3.51
2467 2958 3.067106 GCTGAAACTTTCGACTGGATGA 58.933 45.455 0.00 0.00 0.00 2.92
2468 2959 3.498397 GCTGAAACTTTCGACTGGATGAA 59.502 43.478 0.00 0.00 0.00 2.57
2469 2960 4.154918 GCTGAAACTTTCGACTGGATGAAT 59.845 41.667 0.00 0.00 0.00 2.57
2470 2961 5.672321 GCTGAAACTTTCGACTGGATGAATC 60.672 44.000 0.00 0.00 0.00 2.52
2483 2974 4.156455 GGATGAATCCTATGGTGTGTGT 57.844 45.455 1.86 0.00 43.73 3.72
2484 2975 4.526970 GGATGAATCCTATGGTGTGTGTT 58.473 43.478 1.86 0.00 43.73 3.32
2485 2976 4.576463 GGATGAATCCTATGGTGTGTGTTC 59.424 45.833 1.86 0.00 43.73 3.18
2486 2977 3.595173 TGAATCCTATGGTGTGTGTTCG 58.405 45.455 0.00 0.00 0.00 3.95
2487 2978 3.259625 TGAATCCTATGGTGTGTGTTCGA 59.740 43.478 0.00 0.00 0.00 3.71
2488 2979 4.081142 TGAATCCTATGGTGTGTGTTCGAT 60.081 41.667 0.00 0.00 0.00 3.59
2489 2980 3.245518 TCCTATGGTGTGTGTTCGATG 57.754 47.619 0.00 0.00 0.00 3.84
2490 2981 2.093711 TCCTATGGTGTGTGTTCGATGG 60.094 50.000 0.00 0.00 0.00 3.51
2491 2982 2.093711 CCTATGGTGTGTGTTCGATGGA 60.094 50.000 0.00 0.00 0.00 3.41
2492 2983 2.787473 ATGGTGTGTGTTCGATGGAT 57.213 45.000 0.00 0.00 0.00 3.41
2493 2984 2.093306 TGGTGTGTGTTCGATGGATC 57.907 50.000 0.00 0.00 0.00 3.36
2494 2985 1.623311 TGGTGTGTGTTCGATGGATCT 59.377 47.619 0.00 0.00 0.00 2.75
2495 2986 2.038426 TGGTGTGTGTTCGATGGATCTT 59.962 45.455 0.00 0.00 0.00 2.40
2496 2987 2.416547 GGTGTGTGTTCGATGGATCTTG 59.583 50.000 0.00 0.00 0.00 3.02
2497 2988 2.416547 GTGTGTGTTCGATGGATCTTGG 59.583 50.000 0.00 0.00 0.00 3.61
2498 2989 1.398390 GTGTGTTCGATGGATCTTGGC 59.602 52.381 0.00 0.00 0.00 4.52
2499 2990 1.017387 GTGTTCGATGGATCTTGGCC 58.983 55.000 0.00 0.00 0.00 5.36
2500 2991 0.617935 TGTTCGATGGATCTTGGCCA 59.382 50.000 0.00 0.00 40.24 5.36
2501 2992 1.303309 GTTCGATGGATCTTGGCCAG 58.697 55.000 5.11 0.00 39.11 4.85
2502 2993 0.464373 TTCGATGGATCTTGGCCAGC 60.464 55.000 5.11 0.00 39.11 4.85
2503 2994 1.895707 CGATGGATCTTGGCCAGCC 60.896 63.158 5.11 7.32 38.56 4.85
2504 2995 1.895707 GATGGATCTTGGCCAGCCG 60.896 63.158 5.11 0.00 39.11 5.52
2505 2996 3.426309 ATGGATCTTGGCCAGCCGG 62.426 63.158 5.11 0.00 39.11 6.13
2506 2997 4.115199 GGATCTTGGCCAGCCGGT 62.115 66.667 5.11 0.00 39.42 5.28
2507 2998 2.825836 GATCTTGGCCAGCCGGTG 60.826 66.667 5.11 0.00 39.42 4.94
2508 2999 3.628646 GATCTTGGCCAGCCGGTGT 62.629 63.158 5.11 0.00 39.42 4.16
2509 3000 3.210012 ATCTTGGCCAGCCGGTGTT 62.210 57.895 5.11 0.00 39.42 3.32
2510 3001 1.847798 ATCTTGGCCAGCCGGTGTTA 61.848 55.000 5.11 0.00 39.42 2.41
2511 3002 1.378514 CTTGGCCAGCCGGTGTTAT 60.379 57.895 5.11 0.00 39.42 1.89
2512 3003 1.656818 CTTGGCCAGCCGGTGTTATG 61.657 60.000 5.11 0.00 39.42 1.90
2513 3004 2.130821 TTGGCCAGCCGGTGTTATGA 62.131 55.000 5.11 0.00 39.42 2.15
2514 3005 1.377987 GGCCAGCCGGTGTTATGAA 60.378 57.895 1.90 0.00 33.28 2.57
2515 3006 1.654023 GGCCAGCCGGTGTTATGAAC 61.654 60.000 1.90 0.00 33.28 3.18
2516 3007 0.676782 GCCAGCCGGTGTTATGAACT 60.677 55.000 1.90 0.00 33.28 3.01
2517 3008 1.086696 CCAGCCGGTGTTATGAACTG 58.913 55.000 1.90 0.00 0.00 3.16
2518 3009 1.338674 CCAGCCGGTGTTATGAACTGA 60.339 52.381 1.90 0.00 0.00 3.41
2519 3010 2.632377 CAGCCGGTGTTATGAACTGAT 58.368 47.619 1.90 0.00 0.00 2.90
2520 3011 3.431626 CCAGCCGGTGTTATGAACTGATA 60.432 47.826 1.90 0.00 0.00 2.15
2521 3012 3.555956 CAGCCGGTGTTATGAACTGATAC 59.444 47.826 1.90 0.00 0.00 2.24
2522 3013 2.870411 GCCGGTGTTATGAACTGATACC 59.130 50.000 1.90 0.00 0.00 2.73
2523 3014 3.431766 GCCGGTGTTATGAACTGATACCT 60.432 47.826 1.90 0.00 0.00 3.08
2524 3015 4.766375 CCGGTGTTATGAACTGATACCTT 58.234 43.478 0.00 0.00 0.00 3.50
2525 3016 4.570772 CCGGTGTTATGAACTGATACCTTG 59.429 45.833 0.00 0.00 0.00 3.61
2526 3017 5.175859 CGGTGTTATGAACTGATACCTTGT 58.824 41.667 0.00 0.00 0.00 3.16
2527 3018 6.334989 CGGTGTTATGAACTGATACCTTGTA 58.665 40.000 0.00 0.00 0.00 2.41
2528 3019 6.814644 CGGTGTTATGAACTGATACCTTGTAA 59.185 38.462 0.00 0.00 0.00 2.41
2529 3020 7.332430 CGGTGTTATGAACTGATACCTTGTAAA 59.668 37.037 0.00 0.00 0.00 2.01
2530 3021 9.174166 GGTGTTATGAACTGATACCTTGTAAAT 57.826 33.333 0.00 0.00 0.00 1.40
2535 3026 8.723942 ATGAACTGATACCTTGTAAATCTGTC 57.276 34.615 0.00 0.00 32.63 3.51
2536 3027 6.811665 TGAACTGATACCTTGTAAATCTGTCG 59.188 38.462 0.00 0.00 32.63 4.35
2537 3028 5.661458 ACTGATACCTTGTAAATCTGTCGG 58.339 41.667 0.00 0.00 29.10 4.79
2538 3029 5.018539 TGATACCTTGTAAATCTGTCGGG 57.981 43.478 0.00 0.00 0.00 5.14
2539 3030 4.468510 TGATACCTTGTAAATCTGTCGGGT 59.531 41.667 0.00 0.00 0.00 5.28
2540 3031 3.782656 ACCTTGTAAATCTGTCGGGTT 57.217 42.857 0.00 0.00 0.00 4.11
2541 3032 4.895668 ACCTTGTAAATCTGTCGGGTTA 57.104 40.909 0.00 0.00 0.00 2.85
2542 3033 4.828829 ACCTTGTAAATCTGTCGGGTTAG 58.171 43.478 0.00 0.00 0.00 2.34
2543 3034 4.285260 ACCTTGTAAATCTGTCGGGTTAGT 59.715 41.667 0.00 0.00 0.00 2.24
2544 3035 4.630069 CCTTGTAAATCTGTCGGGTTAGTG 59.370 45.833 0.00 0.00 0.00 2.74
2545 3036 4.877378 TGTAAATCTGTCGGGTTAGTGT 57.123 40.909 0.00 0.00 0.00 3.55
2546 3037 4.562082 TGTAAATCTGTCGGGTTAGTGTG 58.438 43.478 0.00 0.00 0.00 3.82
2547 3038 2.094762 AATCTGTCGGGTTAGTGTGC 57.905 50.000 0.00 0.00 0.00 4.57
2548 3039 1.267121 ATCTGTCGGGTTAGTGTGCT 58.733 50.000 0.00 0.00 0.00 4.40
2549 3040 1.045407 TCTGTCGGGTTAGTGTGCTT 58.955 50.000 0.00 0.00 0.00 3.91
2550 3041 1.148310 CTGTCGGGTTAGTGTGCTTG 58.852 55.000 0.00 0.00 0.00 4.01
2551 3042 0.753867 TGTCGGGTTAGTGTGCTTGA 59.246 50.000 0.00 0.00 0.00 3.02
2552 3043 1.145803 GTCGGGTTAGTGTGCTTGAC 58.854 55.000 0.00 0.00 0.00 3.18
2553 3044 0.753867 TCGGGTTAGTGTGCTTGACA 59.246 50.000 0.00 0.00 0.00 3.58
2554 3045 1.139256 TCGGGTTAGTGTGCTTGACAA 59.861 47.619 0.00 0.00 35.91 3.18
2555 3046 1.944024 CGGGTTAGTGTGCTTGACAAA 59.056 47.619 0.00 0.00 35.91 2.83
2556 3047 2.356382 CGGGTTAGTGTGCTTGACAAAA 59.644 45.455 0.00 0.00 35.91 2.44
2557 3048 3.181495 CGGGTTAGTGTGCTTGACAAAAA 60.181 43.478 0.00 0.00 35.91 1.94
2558 3049 4.109766 GGGTTAGTGTGCTTGACAAAAAC 58.890 43.478 0.00 0.00 35.91 2.43
2559 3050 4.142249 GGGTTAGTGTGCTTGACAAAAACT 60.142 41.667 0.00 0.00 35.91 2.66
2560 3051 4.798387 GGTTAGTGTGCTTGACAAAAACTG 59.202 41.667 0.00 0.00 35.91 3.16
2561 3052 5.399013 GTTAGTGTGCTTGACAAAAACTGT 58.601 37.500 0.00 0.00 42.61 3.55
2562 3053 3.836949 AGTGTGCTTGACAAAAACTGTG 58.163 40.909 0.00 0.00 38.84 3.66
2563 3054 3.505680 AGTGTGCTTGACAAAAACTGTGA 59.494 39.130 0.00 0.00 38.84 3.58
2564 3055 4.022416 AGTGTGCTTGACAAAAACTGTGAA 60.022 37.500 0.00 0.00 38.84 3.18
2565 3056 4.864247 GTGTGCTTGACAAAAACTGTGAAT 59.136 37.500 0.00 0.00 38.84 2.57
2566 3057 6.033341 GTGTGCTTGACAAAAACTGTGAATA 58.967 36.000 0.00 0.00 38.84 1.75
2567 3058 6.697019 GTGTGCTTGACAAAAACTGTGAATAT 59.303 34.615 0.00 0.00 38.84 1.28
2568 3059 7.860373 GTGTGCTTGACAAAAACTGTGAATATA 59.140 33.333 0.00 0.00 38.84 0.86
2569 3060 8.575589 TGTGCTTGACAAAAACTGTGAATATAT 58.424 29.630 0.00 0.00 38.84 0.86
2572 3063 9.226345 GCTTGACAAAAACTGTGAATATATAGC 57.774 33.333 0.00 0.00 38.84 2.97
2576 3067 9.226345 GACAAAAACTGTGAATATATAGCTTGC 57.774 33.333 0.00 0.00 38.84 4.01
2577 3068 8.960591 ACAAAAACTGTGAATATATAGCTTGCT 58.039 29.630 0.00 0.00 36.69 3.91
2578 3069 9.793252 CAAAAACTGTGAATATATAGCTTGCTT 57.207 29.630 0.00 0.00 0.00 3.91
2580 3071 7.736447 AACTGTGAATATATAGCTTGCTTCC 57.264 36.000 0.00 0.00 0.00 3.46
2581 3072 6.234177 ACTGTGAATATATAGCTTGCTTCCC 58.766 40.000 0.00 0.00 0.00 3.97
2582 3073 6.043706 ACTGTGAATATATAGCTTGCTTCCCT 59.956 38.462 0.00 0.00 0.00 4.20
2583 3074 7.235606 ACTGTGAATATATAGCTTGCTTCCCTA 59.764 37.037 0.00 0.00 0.00 3.53
2584 3075 7.386851 TGTGAATATATAGCTTGCTTCCCTAC 58.613 38.462 0.00 0.00 0.00 3.18
2585 3076 7.016170 TGTGAATATATAGCTTGCTTCCCTACA 59.984 37.037 0.00 0.00 0.00 2.74
2586 3077 8.043710 GTGAATATATAGCTTGCTTCCCTACAT 58.956 37.037 0.00 0.00 0.00 2.29
2587 3078 8.260818 TGAATATATAGCTTGCTTCCCTACATC 58.739 37.037 0.00 0.00 0.00 3.06
2588 3079 7.739995 ATATATAGCTTGCTTCCCTACATCA 57.260 36.000 0.00 0.00 0.00 3.07
2589 3080 4.989875 ATAGCTTGCTTCCCTACATCAT 57.010 40.909 0.00 0.00 0.00 2.45
2590 3081 3.205784 AGCTTGCTTCCCTACATCATC 57.794 47.619 0.00 0.00 0.00 2.92
2591 3082 2.776536 AGCTTGCTTCCCTACATCATCT 59.223 45.455 0.00 0.00 0.00 2.90
2592 3083 2.877168 GCTTGCTTCCCTACATCATCTG 59.123 50.000 0.00 0.00 0.00 2.90
2593 3084 3.683847 GCTTGCTTCCCTACATCATCTGT 60.684 47.826 0.00 0.00 42.13 3.41
2594 3085 3.827008 TGCTTCCCTACATCATCTGTC 57.173 47.619 0.00 0.00 39.39 3.51
2595 3086 3.378512 TGCTTCCCTACATCATCTGTCT 58.621 45.455 0.00 0.00 39.39 3.41
2596 3087 3.133542 TGCTTCCCTACATCATCTGTCTG 59.866 47.826 0.00 0.00 39.39 3.51
2597 3088 3.494048 GCTTCCCTACATCATCTGTCTGG 60.494 52.174 0.00 0.00 39.39 3.86
2598 3089 3.404869 TCCCTACATCATCTGTCTGGT 57.595 47.619 0.00 0.00 39.39 4.00
2599 3090 3.300388 TCCCTACATCATCTGTCTGGTC 58.700 50.000 0.00 0.00 39.39 4.02
2600 3091 3.033909 CCCTACATCATCTGTCTGGTCA 58.966 50.000 0.00 0.00 39.39 4.02
2601 3092 3.069300 CCCTACATCATCTGTCTGGTCAG 59.931 52.174 0.00 0.00 39.39 3.51
2602 3093 3.703556 CCTACATCATCTGTCTGGTCAGT 59.296 47.826 0.00 0.00 39.39 3.41
2603 3094 3.606595 ACATCATCTGTCTGGTCAGTG 57.393 47.619 0.00 0.00 36.85 3.66
2604 3095 2.277969 CATCATCTGTCTGGTCAGTGC 58.722 52.381 0.00 0.00 36.85 4.40
2605 3096 0.610174 TCATCTGTCTGGTCAGTGCC 59.390 55.000 0.00 0.00 36.85 5.01
2606 3097 0.322648 CATCTGTCTGGTCAGTGCCA 59.677 55.000 6.20 6.20 36.85 4.92
2607 3098 1.059098 ATCTGTCTGGTCAGTGCCAA 58.941 50.000 7.54 0.00 38.18 4.52
2608 3099 0.836606 TCTGTCTGGTCAGTGCCAAA 59.163 50.000 7.54 0.00 38.18 3.28
2609 3100 1.421268 TCTGTCTGGTCAGTGCCAAAT 59.579 47.619 7.54 0.00 38.18 2.32
2610 3101 2.637382 TCTGTCTGGTCAGTGCCAAATA 59.363 45.455 7.54 0.00 38.18 1.40
2611 3102 3.264193 TCTGTCTGGTCAGTGCCAAATAT 59.736 43.478 7.54 0.00 38.18 1.28
2612 3103 4.012374 CTGTCTGGTCAGTGCCAAATATT 58.988 43.478 7.54 0.00 38.18 1.28
2613 3104 3.758023 TGTCTGGTCAGTGCCAAATATTG 59.242 43.478 7.54 0.00 38.18 1.90
2614 3105 2.754552 TCTGGTCAGTGCCAAATATTGC 59.245 45.455 7.54 0.00 38.18 3.56
2615 3106 2.492881 CTGGTCAGTGCCAAATATTGCA 59.507 45.455 7.54 0.00 38.18 4.08
2616 3107 2.896044 TGGTCAGTGCCAAATATTGCAA 59.104 40.909 0.00 0.00 39.57 4.08
2617 3108 3.323115 TGGTCAGTGCCAAATATTGCAAA 59.677 39.130 1.71 0.00 39.57 3.68
2618 3109 4.202295 TGGTCAGTGCCAAATATTGCAAAA 60.202 37.500 1.71 0.00 39.57 2.44
2619 3110 4.754114 GGTCAGTGCCAAATATTGCAAAAA 59.246 37.500 1.71 0.00 39.57 1.94
2638 3129 4.953940 AAAAATTAGCAAAGGTCAGCCA 57.046 36.364 0.00 0.00 37.19 4.75
2639 3130 4.953940 AAAATTAGCAAAGGTCAGCCAA 57.046 36.364 0.00 0.00 37.19 4.52
2641 3132 5.488262 AAATTAGCAAAGGTCAGCCAAAT 57.512 34.783 0.00 0.00 37.19 2.32
2642 3133 5.488262 AATTAGCAAAGGTCAGCCAAATT 57.512 34.783 0.00 0.00 37.19 1.82
2646 3137 5.289083 AGCAAAGGTCAGCCAAATTTTTA 57.711 34.783 0.00 0.00 37.19 1.52
2647 3138 5.299949 AGCAAAGGTCAGCCAAATTTTTAG 58.700 37.500 0.00 0.00 37.19 1.85
2648 3139 5.070313 AGCAAAGGTCAGCCAAATTTTTAGA 59.930 36.000 0.00 0.00 37.19 2.10
2649 3140 5.934043 GCAAAGGTCAGCCAAATTTTTAGAT 59.066 36.000 0.00 0.00 37.19 1.98
2650 3141 6.091305 GCAAAGGTCAGCCAAATTTTTAGATC 59.909 38.462 0.00 0.00 37.19 2.75
2651 3142 6.916360 AAGGTCAGCCAAATTTTTAGATCA 57.084 33.333 0.00 0.00 37.19 2.92
2751 3248 8.662781 TCTATATCCAACAACTGCTATTTGTC 57.337 34.615 0.00 0.00 36.13 3.18
2825 3322 4.908481 AGGGATTTCTTCTACCCCTATCAC 59.092 45.833 0.00 0.00 45.08 3.06
2860 3357 5.270853 CACTTGAAACAAACTTAGGAACCG 58.729 41.667 0.00 0.00 0.00 4.44
2870 3367 4.010667 ACTTAGGAACCGCACATTTACA 57.989 40.909 0.00 0.00 0.00 2.41
2871 3368 3.749609 ACTTAGGAACCGCACATTTACAC 59.250 43.478 0.00 0.00 0.00 2.90
2879 3376 4.545610 ACCGCACATTTACACAAAAGATG 58.454 39.130 0.00 0.00 0.00 2.90
2884 3381 6.129378 CGCACATTTACACAAAAGATGTTCTG 60.129 38.462 0.00 0.00 41.46 3.02
2889 3386 9.950680 CATTTACACAAAAGATGTTCTGTAGTT 57.049 29.630 0.00 0.00 41.46 2.24
2896 3393 8.345565 ACAAAAGATGTTCTGTAGTTTCATCAC 58.654 33.333 0.00 0.00 40.06 3.06
2906 3403 8.620116 TCTGTAGTTTCATCACATTCAATGAA 57.380 30.769 3.79 0.00 39.48 2.57
2915 3412 8.797350 TCATCACATTCAATGAAACTACATCT 57.203 30.769 3.79 0.00 0.00 2.90
2918 3415 9.896645 ATCACATTCAATGAAACTACATCTAGT 57.103 29.630 3.79 0.00 34.38 2.57
2919 3416 9.725019 TCACATTCAATGAAACTACATCTAGTT 57.275 29.630 3.79 0.00 43.87 2.24
2929 3426 6.936968 AACTACATCTAGTTTCCTTCAGGT 57.063 37.500 0.00 0.00 39.79 4.00
2930 3427 8.431910 AAACTACATCTAGTTTCCTTCAGGTA 57.568 34.615 0.69 0.00 46.16 3.08
2931 3428 8.431910 AACTACATCTAGTTTCCTTCAGGTAA 57.568 34.615 0.00 0.00 39.79 2.85
2932 3429 8.431910 ACTACATCTAGTTTCCTTCAGGTAAA 57.568 34.615 0.00 0.00 30.69 2.01
2933 3430 8.877195 ACTACATCTAGTTTCCTTCAGGTAAAA 58.123 33.333 0.00 0.00 30.69 1.52
2962 4399 5.731591 ACATCTAGTTTCCTTACCTTTCCG 58.268 41.667 0.00 0.00 0.00 4.30
2963 4400 4.813750 TCTAGTTTCCTTACCTTTCCGG 57.186 45.455 0.00 0.00 39.35 5.14
2992 4429 6.184068 TGCTAGCTAGATTATCCCTAGTCAG 58.816 44.000 25.15 0.00 36.77 3.51
3002 4439 2.884320 TCCCTAGTCAGCACACTGTTA 58.116 47.619 0.00 0.00 44.77 2.41
3007 4445 4.645136 CCTAGTCAGCACACTGTTATAGGA 59.355 45.833 11.89 0.00 44.77 2.94
3084 4522 2.286831 CGATGAAGCCATGCAATCTGAC 60.287 50.000 0.00 0.00 32.09 3.51
3096 4534 5.336150 TGCAATCTGACCACTTTTCAAAA 57.664 34.783 0.00 0.00 0.00 2.44
3104 4542 7.703328 TCTGACCACTTTTCAAAATCAAGTAC 58.297 34.615 0.00 0.00 0.00 2.73
3115 4553 7.739498 TCAAAATCAAGTACAAGGACCTAAC 57.261 36.000 0.00 0.00 0.00 2.34
3121 4559 7.364149 TCAAGTACAAGGACCTAACAGTAAA 57.636 36.000 0.00 0.00 0.00 2.01
3130 4568 6.479006 AGGACCTAACAGTAAATTTACCACC 58.521 40.000 21.92 13.87 34.19 4.61
3131 4569 6.044637 AGGACCTAACAGTAAATTTACCACCA 59.955 38.462 21.92 7.27 34.19 4.17
3148 4586 5.588845 ACCACCAATCTTCCCATTCATTAA 58.411 37.500 0.00 0.00 0.00 1.40
3159 4597 9.056005 TCTTCCCATTCATTAAGATTAACATCG 57.944 33.333 0.00 0.00 34.17 3.84
3177 4615 3.469008 TCGAAACAGAGCCTTTTCTGA 57.531 42.857 9.78 0.00 45.95 3.27
3190 4628 7.014615 AGAGCCTTTTCTGATTTAACAACACAT 59.985 33.333 0.00 0.00 0.00 3.21
3204 4645 9.452287 TTTAACAACACATAGTAGTATTTCCCC 57.548 33.333 0.00 0.00 0.00 4.81
3227 4668 7.334858 CCCATAGGGCTCTTCTAAATCTAATC 58.665 42.308 0.00 0.00 35.35 1.75
3275 4721 8.161754 GCTTTTGCAATAGTACAAGTGTTATG 57.838 34.615 16.75 0.00 46.58 1.90
3276 4722 7.273381 GCTTTTGCAATAGTACAAGTGTTATGG 59.727 37.037 16.75 0.00 46.58 2.74
3277 4723 5.811399 TGCAATAGTACAAGTGTTATGGC 57.189 39.130 0.00 0.00 0.00 4.40
3278 4724 4.638421 TGCAATAGTACAAGTGTTATGGCC 59.362 41.667 0.00 0.00 0.00 5.36
3279 4725 4.638421 GCAATAGTACAAGTGTTATGGCCA 59.362 41.667 8.56 8.56 0.00 5.36
3280 4726 5.220854 GCAATAGTACAAGTGTTATGGCCAG 60.221 44.000 13.05 0.00 0.00 4.85
3281 4727 5.693769 ATAGTACAAGTGTTATGGCCAGT 57.306 39.130 13.05 3.03 0.00 4.00
3282 4728 4.367039 AGTACAAGTGTTATGGCCAGTT 57.633 40.909 13.05 0.00 0.00 3.16
3283 4729 4.725490 AGTACAAGTGTTATGGCCAGTTT 58.275 39.130 13.05 0.00 0.00 2.66
3284 4730 5.871834 AGTACAAGTGTTATGGCCAGTTTA 58.128 37.500 13.05 0.00 0.00 2.01
3285 4731 5.938125 AGTACAAGTGTTATGGCCAGTTTAG 59.062 40.000 13.05 0.00 0.00 1.85
3286 4732 3.506067 ACAAGTGTTATGGCCAGTTTAGC 59.494 43.478 13.05 1.14 0.00 3.09
3287 4733 3.721087 AGTGTTATGGCCAGTTTAGCT 57.279 42.857 13.05 1.88 0.00 3.32
3288 4734 4.837093 AGTGTTATGGCCAGTTTAGCTA 57.163 40.909 13.05 0.00 0.00 3.32
3289 4735 4.770795 AGTGTTATGGCCAGTTTAGCTAG 58.229 43.478 13.05 0.00 0.00 3.42
3290 4736 3.877508 GTGTTATGGCCAGTTTAGCTAGG 59.122 47.826 13.05 0.00 0.00 3.02
3291 4737 2.879026 GTTATGGCCAGTTTAGCTAGGC 59.121 50.000 13.05 12.25 46.28 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 130 1.942657 CATGCATAGGAAACAGGGTCG 59.057 52.381 0.00 0.00 0.00 4.79
223 227 4.707448 TCTTCTGGTCACTAATCCTCTGAC 59.293 45.833 0.00 0.00 34.68 3.51
225 229 4.441356 GCTCTTCTGGTCACTAATCCTCTG 60.441 50.000 0.00 0.00 0.00 3.35
245 249 4.876679 GGGAGTACTTTCATGTTTAGGCTC 59.123 45.833 0.00 2.27 0.00 4.70
251 255 3.326880 ACGGAGGGAGTACTTTCATGTTT 59.673 43.478 0.00 0.00 0.00 2.83
360 378 1.465387 CGTTGCTATTGTTTGGGCGTA 59.535 47.619 0.00 0.00 0.00 4.42
362 380 0.519519 TCGTTGCTATTGTTTGGGCG 59.480 50.000 0.00 0.00 0.00 6.13
363 381 2.939460 ATCGTTGCTATTGTTTGGGC 57.061 45.000 0.00 0.00 0.00 5.36
370 388 4.679197 GTCTCAGAGCTATCGTTGCTATTG 59.321 45.833 0.00 0.00 41.30 1.90
473 690 5.991606 CGTGTGATGATTCCTGGTATGTTAT 59.008 40.000 0.00 0.00 0.00 1.89
602 831 5.000591 TGCAACCTTTGAGATGATTTCGTA 58.999 37.500 0.00 0.00 0.00 3.43
605 834 4.082354 AGCTGCAACCTTTGAGATGATTTC 60.082 41.667 1.02 0.00 0.00 2.17
616 845 2.637872 TCTGTAGGTAGCTGCAACCTTT 59.362 45.455 13.66 0.00 45.26 3.11
617 846 2.257207 TCTGTAGGTAGCTGCAACCTT 58.743 47.619 13.66 0.00 45.26 3.50
619 848 2.483889 GGATCTGTAGGTAGCTGCAACC 60.484 54.545 13.76 12.73 37.27 3.77
620 849 2.168521 TGGATCTGTAGGTAGCTGCAAC 59.831 50.000 13.76 8.19 0.00 4.17
622 851 2.159179 TGGATCTGTAGGTAGCTGCA 57.841 50.000 12.27 12.27 0.00 4.41
623 852 2.483889 GGTTGGATCTGTAGGTAGCTGC 60.484 54.545 4.27 3.46 0.00 5.25
624 853 2.103263 GGGTTGGATCTGTAGGTAGCTG 59.897 54.545 4.27 0.00 0.00 4.24
625 854 2.292918 TGGGTTGGATCTGTAGGTAGCT 60.293 50.000 0.00 0.00 0.00 3.32
626 855 2.116238 TGGGTTGGATCTGTAGGTAGC 58.884 52.381 0.00 0.00 0.00 3.58
627 856 4.837093 TTTGGGTTGGATCTGTAGGTAG 57.163 45.455 0.00 0.00 0.00 3.18
628 857 6.894735 TTATTTGGGTTGGATCTGTAGGTA 57.105 37.500 0.00 0.00 0.00 3.08
629 858 5.789574 TTATTTGGGTTGGATCTGTAGGT 57.210 39.130 0.00 0.00 0.00 3.08
630 859 6.364701 TGATTATTTGGGTTGGATCTGTAGG 58.635 40.000 0.00 0.00 0.00 3.18
631 860 9.745018 ATATGATTATTTGGGTTGGATCTGTAG 57.255 33.333 0.00 0.00 0.00 2.74
686 956 5.647589 TCGAGACGTATAGCAAATTTCAGT 58.352 37.500 0.00 0.00 0.00 3.41
828 1124 0.398381 GAGGAGAGGAGACAGGGCAT 60.398 60.000 0.00 0.00 0.00 4.40
830 1126 0.755327 GAGAGGAGAGGAGACAGGGC 60.755 65.000 0.00 0.00 0.00 5.19
832 1128 0.926293 AGGAGAGGAGAGGAGACAGG 59.074 60.000 0.00 0.00 0.00 4.00
835 1131 1.143073 GGAGAGGAGAGGAGAGGAGAC 59.857 61.905 0.00 0.00 0.00 3.36
836 1132 1.010793 AGGAGAGGAGAGGAGAGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
837 1133 1.421646 GAGGAGAGGAGAGGAGAGGAG 59.578 61.905 0.00 0.00 0.00 3.69
838 1134 1.010793 AGAGGAGAGGAGAGGAGAGGA 59.989 57.143 0.00 0.00 0.00 3.71
839 1135 1.143684 CAGAGGAGAGGAGAGGAGAGG 59.856 61.905 0.00 0.00 0.00 3.69
840 1136 1.143684 CCAGAGGAGAGGAGAGGAGAG 59.856 61.905 0.00 0.00 0.00 3.20
841 1137 1.221635 CCAGAGGAGAGGAGAGGAGA 58.778 60.000 0.00 0.00 0.00 3.71
870 1166 3.089784 CTCCGGTGTATTGCGTGC 58.910 61.111 0.00 0.00 0.00 5.34
905 1202 1.813753 ATGGATGGTTCGGCGAACG 60.814 57.895 37.12 0.00 42.78 3.95
922 1219 1.562942 CCGGATGGATGGATGGATCAT 59.437 52.381 0.00 0.00 37.49 2.45
923 1220 0.986527 CCGGATGGATGGATGGATCA 59.013 55.000 0.00 0.00 37.49 2.92
954 1251 6.183361 GGGGTTTATATAGGGGTTTGGAGATT 60.183 42.308 0.00 0.00 0.00 2.40
1031 1340 6.542821 AGTACTAGGAGATGAAGATGAGGAG 58.457 44.000 0.00 0.00 0.00 3.69
1047 1356 5.662674 AGCTAGGAACAACAAGTACTAGG 57.337 43.478 0.00 0.00 37.91 3.02
1060 1369 5.432885 CTCAACTAGAGCTAGCTAGGAAC 57.567 47.826 19.38 4.54 41.69 3.62
1111 1435 2.044650 ATGCGAGCCATGCCTTGT 60.045 55.556 0.00 0.00 31.48 3.16
1401 1816 4.749099 GCTGCACATTCATAAACACCAAAA 59.251 37.500 0.00 0.00 0.00 2.44
1410 1825 2.672874 GACGACAGCTGCACATTCATAA 59.327 45.455 15.27 0.00 0.00 1.90
1551 1966 1.265454 GGTGGGATCGAACCAGAGGT 61.265 60.000 14.28 0.00 39.00 3.85
1654 2069 0.248702 GCCGGCGTTCTTGAAACAAA 60.249 50.000 12.58 0.00 0.00 2.83
1691 2116 1.371337 CGGTCAGTCCATGTGGCATG 61.371 60.000 0.00 2.38 35.57 4.06
1695 2120 0.536724 TGATCGGTCAGTCCATGTGG 59.463 55.000 0.00 0.00 35.57 4.17
2013 2465 3.741476 GTACCACTCGCCCGACGT 61.741 66.667 0.00 0.00 44.19 4.34
2016 2468 2.652530 GTTGTACCACTCGCCCGA 59.347 61.111 0.00 0.00 0.00 5.14
2188 2648 1.315981 CGGAGTCCAGTGCTAGCAGA 61.316 60.000 20.03 9.57 0.00 4.26
2244 2704 7.057894 GGTTTATACATACACCCCATCTTTCA 58.942 38.462 0.00 0.00 28.97 2.69
2283 2747 5.221501 ACCGGCTACTTTACAACAGTTTCTA 60.222 40.000 0.00 0.00 0.00 2.10
2286 2750 3.562557 CACCGGCTACTTTACAACAGTTT 59.437 43.478 0.00 0.00 0.00 2.66
2288 2752 2.549349 CCACCGGCTACTTTACAACAGT 60.549 50.000 0.00 0.00 0.00 3.55
2289 2753 2.073816 CCACCGGCTACTTTACAACAG 58.926 52.381 0.00 0.00 0.00 3.16
2337 2827 0.725686 CACGAATTGAGCCTGAGCAG 59.274 55.000 0.00 0.00 43.56 4.24
2345 2835 4.835199 ACGTATTACACACGAATTGAGC 57.165 40.909 1.43 0.00 41.91 4.26
2354 2844 7.941795 AGGAAGCAATATACGTATTACACAC 57.058 36.000 14.33 0.00 0.00 3.82
2358 2848 9.257651 AGAACAAGGAAGCAATATACGTATTAC 57.742 33.333 14.33 0.00 0.00 1.89
2360 2850 8.732746 AAGAACAAGGAAGCAATATACGTATT 57.267 30.769 14.33 0.00 0.00 1.89
2361 2851 7.169308 CGAAGAACAAGGAAGCAATATACGTAT 59.831 37.037 13.54 13.54 0.00 3.06
2362 2852 6.474427 CGAAGAACAAGGAAGCAATATACGTA 59.526 38.462 0.00 0.00 0.00 3.57
2364 2854 5.291128 ACGAAGAACAAGGAAGCAATATACG 59.709 40.000 0.00 0.00 0.00 3.06
2365 2855 6.535508 AGACGAAGAACAAGGAAGCAATATAC 59.464 38.462 0.00 0.00 0.00 1.47
2368 2858 4.690748 CAGACGAAGAACAAGGAAGCAATA 59.309 41.667 0.00 0.00 0.00 1.90
2369 2859 3.499918 CAGACGAAGAACAAGGAAGCAAT 59.500 43.478 0.00 0.00 0.00 3.56
2370 2860 2.872245 CAGACGAAGAACAAGGAAGCAA 59.128 45.455 0.00 0.00 0.00 3.91
2371 2861 2.158957 ACAGACGAAGAACAAGGAAGCA 60.159 45.455 0.00 0.00 0.00 3.91
2372 2862 2.484889 ACAGACGAAGAACAAGGAAGC 58.515 47.619 0.00 0.00 0.00 3.86
2394 2885 2.932614 CCAATTAGAACAGAGAGCACCG 59.067 50.000 0.00 0.00 0.00 4.94
2415 2906 7.511959 AAGAAAGACAAATAGGAACCTGTTC 57.488 36.000 3.36 1.33 38.80 3.18
2416 2907 7.898014 AAAGAAAGACAAATAGGAACCTGTT 57.102 32.000 3.36 0.07 0.00 3.16
2417 2908 7.559897 TGAAAAGAAAGACAAATAGGAACCTGT 59.440 33.333 3.36 0.00 0.00 4.00
2418 2909 7.940850 TGAAAAGAAAGACAAATAGGAACCTG 58.059 34.615 3.36 0.00 0.00 4.00
2419 2910 8.414003 GTTGAAAAGAAAGACAAATAGGAACCT 58.586 33.333 0.00 0.00 0.00 3.50
2420 2911 7.378728 CGTTGAAAAGAAAGACAAATAGGAACC 59.621 37.037 0.00 0.00 0.00 3.62
2421 2912 7.096599 GCGTTGAAAAGAAAGACAAATAGGAAC 60.097 37.037 0.00 0.00 0.00 3.62
2422 2913 6.915843 GCGTTGAAAAGAAAGACAAATAGGAA 59.084 34.615 0.00 0.00 0.00 3.36
2423 2914 6.262273 AGCGTTGAAAAGAAAGACAAATAGGA 59.738 34.615 0.00 0.00 0.00 2.94
2424 2915 6.360681 CAGCGTTGAAAAGAAAGACAAATAGG 59.639 38.462 0.00 0.00 0.00 2.57
2425 2916 7.132213 TCAGCGTTGAAAAGAAAGACAAATAG 58.868 34.615 0.00 0.00 0.00 1.73
2426 2917 7.022055 TCAGCGTTGAAAAGAAAGACAAATA 57.978 32.000 0.00 0.00 0.00 1.40
2427 2918 5.890334 TCAGCGTTGAAAAGAAAGACAAAT 58.110 33.333 0.00 0.00 0.00 2.32
2428 2919 5.303747 TCAGCGTTGAAAAGAAAGACAAA 57.696 34.783 0.00 0.00 0.00 2.83
2429 2920 4.955925 TCAGCGTTGAAAAGAAAGACAA 57.044 36.364 0.00 0.00 0.00 3.18
2430 2921 4.955925 TTCAGCGTTGAAAAGAAAGACA 57.044 36.364 12.63 0.00 40.26 3.41
2440 2931 2.933906 AGTCGAAAGTTTCAGCGTTGAA 59.066 40.909 10.92 10.92 41.44 2.69
2441 2932 2.284150 CAGTCGAAAGTTTCAGCGTTGA 59.716 45.455 15.67 0.00 0.00 3.18
2442 2933 2.599848 CCAGTCGAAAGTTTCAGCGTTG 60.600 50.000 15.67 0.00 0.00 4.10
2443 2934 1.597663 CCAGTCGAAAGTTTCAGCGTT 59.402 47.619 15.67 0.00 0.00 4.84
2444 2935 1.202486 TCCAGTCGAAAGTTTCAGCGT 60.202 47.619 15.67 0.00 0.00 5.07
2445 2936 1.497991 TCCAGTCGAAAGTTTCAGCG 58.502 50.000 15.67 2.81 0.00 5.18
2446 2937 3.067106 TCATCCAGTCGAAAGTTTCAGC 58.933 45.455 15.67 7.26 0.00 4.26
2447 2938 5.163814 GGATTCATCCAGTCGAAAGTTTCAG 60.164 44.000 15.67 8.44 46.38 3.02
2448 2939 4.695455 GGATTCATCCAGTCGAAAGTTTCA 59.305 41.667 15.67 0.56 46.38 2.69
2449 2940 5.223225 GGATTCATCCAGTCGAAAGTTTC 57.777 43.478 5.47 5.47 46.38 2.78
2463 2954 4.271049 CGAACACACACCATAGGATTCATC 59.729 45.833 0.00 0.00 0.00 2.92
2464 2955 4.081142 TCGAACACACACCATAGGATTCAT 60.081 41.667 0.00 0.00 0.00 2.57
2465 2956 3.259625 TCGAACACACACCATAGGATTCA 59.740 43.478 0.00 0.00 0.00 2.57
2466 2957 3.857052 TCGAACACACACCATAGGATTC 58.143 45.455 0.00 0.00 0.00 2.52
2467 2958 3.973206 TCGAACACACACCATAGGATT 57.027 42.857 0.00 0.00 0.00 3.01
2468 2959 3.432186 CCATCGAACACACACCATAGGAT 60.432 47.826 0.00 0.00 0.00 3.24
2469 2960 2.093711 CCATCGAACACACACCATAGGA 60.094 50.000 0.00 0.00 0.00 2.94
2470 2961 2.093711 TCCATCGAACACACACCATAGG 60.094 50.000 0.00 0.00 0.00 2.57
2471 2962 3.245518 TCCATCGAACACACACCATAG 57.754 47.619 0.00 0.00 0.00 2.23
2472 2963 3.450817 AGATCCATCGAACACACACCATA 59.549 43.478 0.00 0.00 0.00 2.74
2473 2964 2.237143 AGATCCATCGAACACACACCAT 59.763 45.455 0.00 0.00 0.00 3.55
2474 2965 1.623311 AGATCCATCGAACACACACCA 59.377 47.619 0.00 0.00 0.00 4.17
2475 2966 2.386661 AGATCCATCGAACACACACC 57.613 50.000 0.00 0.00 0.00 4.16
2476 2967 2.416547 CCAAGATCCATCGAACACACAC 59.583 50.000 0.00 0.00 0.00 3.82
2477 2968 2.698803 CCAAGATCCATCGAACACACA 58.301 47.619 0.00 0.00 0.00 3.72
2478 2969 1.398390 GCCAAGATCCATCGAACACAC 59.602 52.381 0.00 0.00 0.00 3.82
2479 2970 1.678728 GGCCAAGATCCATCGAACACA 60.679 52.381 0.00 0.00 0.00 3.72
2480 2971 1.017387 GGCCAAGATCCATCGAACAC 58.983 55.000 0.00 0.00 0.00 3.32
2481 2972 0.617935 TGGCCAAGATCCATCGAACA 59.382 50.000 0.61 0.00 0.00 3.18
2482 2973 1.303309 CTGGCCAAGATCCATCGAAC 58.697 55.000 7.01 0.00 32.37 3.95
2483 2974 0.464373 GCTGGCCAAGATCCATCGAA 60.464 55.000 7.01 0.00 32.37 3.71
2484 2975 1.146930 GCTGGCCAAGATCCATCGA 59.853 57.895 7.01 0.00 32.37 3.59
2485 2976 1.895707 GGCTGGCCAAGATCCATCG 60.896 63.158 7.01 0.00 35.81 3.84
2486 2977 1.895707 CGGCTGGCCAAGATCCATC 60.896 63.158 7.01 0.00 35.37 3.51
2487 2978 2.194056 CGGCTGGCCAAGATCCAT 59.806 61.111 7.01 0.00 35.37 3.41
2488 2979 4.113815 CCGGCTGGCCAAGATCCA 62.114 66.667 7.01 0.00 35.37 3.41
2489 2980 4.115199 ACCGGCTGGCCAAGATCC 62.115 66.667 12.89 4.85 39.70 3.36
2490 2981 2.825836 CACCGGCTGGCCAAGATC 60.826 66.667 12.89 0.00 39.70 2.75
2491 2982 1.847798 TAACACCGGCTGGCCAAGAT 61.848 55.000 12.89 0.00 39.70 2.40
2492 2983 1.847798 ATAACACCGGCTGGCCAAGA 61.848 55.000 12.89 0.00 39.70 3.02
2493 2984 1.378514 ATAACACCGGCTGGCCAAG 60.379 57.895 12.89 1.85 39.70 3.61
2494 2985 1.677300 CATAACACCGGCTGGCCAA 60.677 57.895 12.89 0.00 39.70 4.52
2495 2986 2.045438 CATAACACCGGCTGGCCA 60.045 61.111 12.89 4.71 39.70 5.36
2496 2987 1.377987 TTCATAACACCGGCTGGCC 60.378 57.895 12.89 0.00 39.70 5.36
2497 2988 0.676782 AGTTCATAACACCGGCTGGC 60.677 55.000 12.89 0.00 39.70 4.85
2498 2989 1.086696 CAGTTCATAACACCGGCTGG 58.913 55.000 11.02 11.02 42.84 4.85
2499 2990 2.093306 TCAGTTCATAACACCGGCTG 57.907 50.000 0.00 1.20 0.00 4.85
2500 2991 3.431766 GGTATCAGTTCATAACACCGGCT 60.432 47.826 0.00 0.00 0.00 5.52
2501 2992 2.870411 GGTATCAGTTCATAACACCGGC 59.130 50.000 0.00 0.00 0.00 6.13
2502 2993 4.402056 AGGTATCAGTTCATAACACCGG 57.598 45.455 0.00 0.00 0.00 5.28
2503 2994 5.175859 ACAAGGTATCAGTTCATAACACCG 58.824 41.667 0.00 0.00 0.00 4.94
2504 2995 8.556213 TTTACAAGGTATCAGTTCATAACACC 57.444 34.615 0.00 0.00 0.00 4.16
2509 3000 9.817809 GACAGATTTACAAGGTATCAGTTCATA 57.182 33.333 0.00 0.00 0.00 2.15
2510 3001 7.492669 CGACAGATTTACAAGGTATCAGTTCAT 59.507 37.037 0.00 0.00 0.00 2.57
2511 3002 6.811665 CGACAGATTTACAAGGTATCAGTTCA 59.188 38.462 0.00 0.00 0.00 3.18
2512 3003 6.255887 CCGACAGATTTACAAGGTATCAGTTC 59.744 42.308 0.00 0.00 0.00 3.01
2513 3004 6.106673 CCGACAGATTTACAAGGTATCAGTT 58.893 40.000 0.00 0.00 0.00 3.16
2514 3005 5.395324 CCCGACAGATTTACAAGGTATCAGT 60.395 44.000 0.00 0.00 0.00 3.41
2515 3006 5.050490 CCCGACAGATTTACAAGGTATCAG 58.950 45.833 0.00 0.00 0.00 2.90
2516 3007 4.468510 ACCCGACAGATTTACAAGGTATCA 59.531 41.667 0.00 0.00 0.00 2.15
2517 3008 5.019785 ACCCGACAGATTTACAAGGTATC 57.980 43.478 0.00 0.00 0.00 2.24
2518 3009 5.431179 AACCCGACAGATTTACAAGGTAT 57.569 39.130 0.00 0.00 0.00 2.73
2519 3010 4.895668 AACCCGACAGATTTACAAGGTA 57.104 40.909 0.00 0.00 0.00 3.08
2520 3011 3.782656 AACCCGACAGATTTACAAGGT 57.217 42.857 0.00 0.00 0.00 3.50
2521 3012 4.630069 CACTAACCCGACAGATTTACAAGG 59.370 45.833 0.00 0.00 0.00 3.61
2522 3013 5.120208 CACACTAACCCGACAGATTTACAAG 59.880 44.000 0.00 0.00 0.00 3.16
2523 3014 4.992319 CACACTAACCCGACAGATTTACAA 59.008 41.667 0.00 0.00 0.00 2.41
2524 3015 4.562082 CACACTAACCCGACAGATTTACA 58.438 43.478 0.00 0.00 0.00 2.41
2525 3016 3.370061 GCACACTAACCCGACAGATTTAC 59.630 47.826 0.00 0.00 0.00 2.01
2526 3017 3.259876 AGCACACTAACCCGACAGATTTA 59.740 43.478 0.00 0.00 0.00 1.40
2527 3018 2.038557 AGCACACTAACCCGACAGATTT 59.961 45.455 0.00 0.00 0.00 2.17
2528 3019 1.623811 AGCACACTAACCCGACAGATT 59.376 47.619 0.00 0.00 0.00 2.40
2529 3020 1.267121 AGCACACTAACCCGACAGAT 58.733 50.000 0.00 0.00 0.00 2.90
2530 3021 1.045407 AAGCACACTAACCCGACAGA 58.955 50.000 0.00 0.00 0.00 3.41
2531 3022 1.148310 CAAGCACACTAACCCGACAG 58.852 55.000 0.00 0.00 0.00 3.51
2532 3023 0.753867 TCAAGCACACTAACCCGACA 59.246 50.000 0.00 0.00 0.00 4.35
2533 3024 1.145803 GTCAAGCACACTAACCCGAC 58.854 55.000 0.00 0.00 0.00 4.79
2534 3025 0.753867 TGTCAAGCACACTAACCCGA 59.246 50.000 0.00 0.00 0.00 5.14
2535 3026 1.588674 TTGTCAAGCACACTAACCCG 58.411 50.000 0.00 0.00 33.41 5.28
2536 3027 4.109766 GTTTTTGTCAAGCACACTAACCC 58.890 43.478 0.00 0.00 33.41 4.11
2537 3028 4.798387 CAGTTTTTGTCAAGCACACTAACC 59.202 41.667 0.00 0.00 33.41 2.85
2538 3029 5.286082 CACAGTTTTTGTCAAGCACACTAAC 59.714 40.000 0.00 0.00 38.16 2.34
2539 3030 5.182190 TCACAGTTTTTGTCAAGCACACTAA 59.818 36.000 0.00 0.00 38.16 2.24
2540 3031 4.697828 TCACAGTTTTTGTCAAGCACACTA 59.302 37.500 0.00 0.00 38.16 2.74
2541 3032 3.505680 TCACAGTTTTTGTCAAGCACACT 59.494 39.130 0.00 0.00 38.16 3.55
2542 3033 3.832276 TCACAGTTTTTGTCAAGCACAC 58.168 40.909 0.00 0.00 38.16 3.82
2543 3034 4.511617 TTCACAGTTTTTGTCAAGCACA 57.488 36.364 0.00 0.00 38.16 4.57
2544 3035 8.970691 ATATATTCACAGTTTTTGTCAAGCAC 57.029 30.769 0.00 0.00 38.16 4.40
2546 3037 9.226345 GCTATATATTCACAGTTTTTGTCAAGC 57.774 33.333 0.00 0.00 38.16 4.01
2550 3041 9.226345 GCAAGCTATATATTCACAGTTTTTGTC 57.774 33.333 0.00 0.00 38.16 3.18
2551 3042 8.960591 AGCAAGCTATATATTCACAGTTTTTGT 58.039 29.630 0.00 0.00 41.94 2.83
2552 3043 9.793252 AAGCAAGCTATATATTCACAGTTTTTG 57.207 29.630 0.00 0.00 0.00 2.44
2554 3045 8.624776 GGAAGCAAGCTATATATTCACAGTTTT 58.375 33.333 0.00 0.00 0.00 2.43
2555 3046 7.229506 GGGAAGCAAGCTATATATTCACAGTTT 59.770 37.037 0.00 0.00 0.00 2.66
2556 3047 6.712547 GGGAAGCAAGCTATATATTCACAGTT 59.287 38.462 0.00 0.00 0.00 3.16
2557 3048 6.043706 AGGGAAGCAAGCTATATATTCACAGT 59.956 38.462 0.00 0.00 0.00 3.55
2558 3049 6.471146 AGGGAAGCAAGCTATATATTCACAG 58.529 40.000 0.00 0.00 0.00 3.66
2559 3050 6.439636 AGGGAAGCAAGCTATATATTCACA 57.560 37.500 0.00 0.00 0.00 3.58
2560 3051 7.386851 TGTAGGGAAGCAAGCTATATATTCAC 58.613 38.462 0.00 0.00 0.00 3.18
2561 3052 7.553504 TGTAGGGAAGCAAGCTATATATTCA 57.446 36.000 0.00 0.00 0.00 2.57
2562 3053 8.260818 TGATGTAGGGAAGCAAGCTATATATTC 58.739 37.037 0.00 0.00 0.00 1.75
2563 3054 8.150827 TGATGTAGGGAAGCAAGCTATATATT 57.849 34.615 0.00 0.00 0.00 1.28
2564 3055 7.739995 TGATGTAGGGAAGCAAGCTATATAT 57.260 36.000 0.00 0.00 0.00 0.86
2565 3056 7.621285 AGATGATGTAGGGAAGCAAGCTATATA 59.379 37.037 0.00 0.00 0.00 0.86
2566 3057 6.443206 AGATGATGTAGGGAAGCAAGCTATAT 59.557 38.462 0.00 0.00 0.00 0.86
2567 3058 5.782331 AGATGATGTAGGGAAGCAAGCTATA 59.218 40.000 0.00 0.00 0.00 1.31
2568 3059 4.596643 AGATGATGTAGGGAAGCAAGCTAT 59.403 41.667 0.00 0.00 0.00 2.97
2569 3060 3.969976 AGATGATGTAGGGAAGCAAGCTA 59.030 43.478 0.00 0.00 0.00 3.32
2570 3061 2.776536 AGATGATGTAGGGAAGCAAGCT 59.223 45.455 0.00 0.00 0.00 3.74
2571 3062 2.877168 CAGATGATGTAGGGAAGCAAGC 59.123 50.000 0.00 0.00 0.00 4.01
2572 3063 4.125703 GACAGATGATGTAGGGAAGCAAG 58.874 47.826 0.00 0.00 44.17 4.01
2573 3064 3.776969 AGACAGATGATGTAGGGAAGCAA 59.223 43.478 0.00 0.00 44.17 3.91
2574 3065 3.133542 CAGACAGATGATGTAGGGAAGCA 59.866 47.826 0.00 0.00 44.17 3.91
2575 3066 3.494048 CCAGACAGATGATGTAGGGAAGC 60.494 52.174 0.00 0.00 44.17 3.86
2576 3067 3.708631 ACCAGACAGATGATGTAGGGAAG 59.291 47.826 4.88 0.00 44.17 3.46
2577 3068 3.706594 GACCAGACAGATGATGTAGGGAA 59.293 47.826 4.88 0.00 44.17 3.97
2578 3069 3.300388 GACCAGACAGATGATGTAGGGA 58.700 50.000 4.88 0.00 44.17 4.20
2579 3070 3.033909 TGACCAGACAGATGATGTAGGG 58.966 50.000 4.59 1.39 44.17 3.53
2580 3071 3.703556 ACTGACCAGACAGATGATGTAGG 59.296 47.826 3.76 0.00 44.17 3.18
2581 3072 4.680702 CACTGACCAGACAGATGATGTAG 58.319 47.826 3.76 0.00 44.17 2.74
2582 3073 3.118992 GCACTGACCAGACAGATGATGTA 60.119 47.826 3.76 0.00 44.17 2.29
2584 3075 2.277969 GCACTGACCAGACAGATGATG 58.722 52.381 3.76 0.00 40.63 3.07
2585 3076 1.209019 GGCACTGACCAGACAGATGAT 59.791 52.381 3.76 0.00 40.63 2.45
2586 3077 0.610174 GGCACTGACCAGACAGATGA 59.390 55.000 3.76 0.00 40.63 2.92
2587 3078 0.322648 TGGCACTGACCAGACAGATG 59.677 55.000 3.76 1.04 40.63 2.90
2588 3079 1.059098 TTGGCACTGACCAGACAGAT 58.941 50.000 3.76 0.00 41.82 2.90
2589 3080 0.836606 TTTGGCACTGACCAGACAGA 59.163 50.000 3.76 0.00 41.82 3.41
2590 3081 1.901591 ATTTGGCACTGACCAGACAG 58.098 50.000 3.76 0.00 41.82 3.51
2591 3082 3.719268 ATATTTGGCACTGACCAGACA 57.281 42.857 3.76 0.00 41.82 3.41
2592 3083 3.428045 GCAATATTTGGCACTGACCAGAC 60.428 47.826 3.76 0.00 41.82 3.51
2593 3084 2.754552 GCAATATTTGGCACTGACCAGA 59.245 45.455 3.76 0.00 41.82 3.86
2594 3085 2.492881 TGCAATATTTGGCACTGACCAG 59.507 45.455 0.00 0.00 41.82 4.00
2595 3086 2.523245 TGCAATATTTGGCACTGACCA 58.477 42.857 0.00 0.00 38.16 4.02
2596 3087 3.591196 TTGCAATATTTGGCACTGACC 57.409 42.857 0.00 0.00 40.23 4.02
2597 3088 5.921004 TTTTTGCAATATTTGGCACTGAC 57.079 34.783 0.00 0.00 40.23 3.51
2617 3108 4.953940 TGGCTGACCTTTGCTAATTTTT 57.046 36.364 0.00 0.00 36.63 1.94
2618 3109 4.953940 TTGGCTGACCTTTGCTAATTTT 57.046 36.364 0.00 0.00 36.63 1.82
2619 3110 4.953940 TTTGGCTGACCTTTGCTAATTT 57.046 36.364 0.00 0.00 36.63 1.82
2620 3111 5.488262 AATTTGGCTGACCTTTGCTAATT 57.512 34.783 0.00 0.00 36.63 1.40
2621 3112 5.488262 AAATTTGGCTGACCTTTGCTAAT 57.512 34.783 0.00 0.00 36.63 1.73
2626 3117 7.153985 TGATCTAAAAATTTGGCTGACCTTTG 58.846 34.615 0.00 0.00 36.63 2.77
2726 3222 8.486210 AGACAAATAGCAGTTGTTGGATATAGA 58.514 33.333 4.06 0.00 39.29 1.98
2727 3223 8.668510 AGACAAATAGCAGTTGTTGGATATAG 57.331 34.615 4.06 0.00 39.29 1.31
2729 3225 8.893727 GTTAGACAAATAGCAGTTGTTGGATAT 58.106 33.333 4.06 0.00 39.29 1.63
2730 3226 7.880713 TGTTAGACAAATAGCAGTTGTTGGATA 59.119 33.333 4.06 0.00 39.29 2.59
2731 3227 6.714810 TGTTAGACAAATAGCAGTTGTTGGAT 59.285 34.615 4.06 0.00 39.29 3.41
2737 3234 9.121517 CAAAGAATGTTAGACAAATAGCAGTTG 57.878 33.333 0.00 0.00 0.00 3.16
2804 3301 5.454897 GGTGTGATAGGGGTAGAAGAAATCC 60.455 48.000 0.00 0.00 0.00 3.01
2820 3317 5.616270 TCAAGTGCACTAAAAGGTGTGATA 58.384 37.500 22.01 0.00 39.21 2.15
2825 3322 4.992688 TGTTTCAAGTGCACTAAAAGGTG 58.007 39.130 22.01 13.74 39.91 4.00
2860 3357 6.697019 ACAGAACATCTTTTGTGTAAATGTGC 59.303 34.615 0.00 0.00 38.99 4.57
2870 3367 8.345565 GTGATGAAACTACAGAACATCTTTTGT 58.654 33.333 0.00 0.00 41.53 2.83
2871 3368 8.344831 TGTGATGAAACTACAGAACATCTTTTG 58.655 33.333 0.00 0.00 38.36 2.44
2879 3376 8.506437 TCATTGAATGTGATGAAACTACAGAAC 58.494 33.333 4.93 0.00 29.82 3.01
2889 3386 9.234827 AGATGTAGTTTCATTGAATGTGATGAA 57.765 29.630 4.93 0.00 39.71 2.57
2906 3403 6.936968 ACCTGAAGGAAACTAGATGTAGTT 57.063 37.500 9.39 9.39 43.62 2.24
2937 3434 8.226921 CCGGAAAGGTAAGGAAACTAGATGTTT 61.227 40.741 0.00 0.00 42.41 2.83
2938 3435 6.171213 CGGAAAGGTAAGGAAACTAGATGTT 58.829 40.000 0.00 0.00 42.68 2.71
2962 4399 4.081365 GGGATAATCTAGCTAGCAGGAACC 60.081 50.000 18.83 13.31 0.00 3.62
2963 4400 4.775253 AGGGATAATCTAGCTAGCAGGAAC 59.225 45.833 18.83 5.00 0.00 3.62
2992 4429 6.554334 TGACTTTTTCCTATAACAGTGTGC 57.446 37.500 0.00 0.00 0.00 4.57
3028 4466 3.653836 TGCTAGGTTCCCTTTGAAACCTA 59.346 43.478 12.16 12.16 41.95 3.08
3084 4522 7.435192 GTCCTTGTACTTGATTTTGAAAAGTGG 59.565 37.037 0.00 0.00 35.77 4.00
3096 4534 7.549147 TTACTGTTAGGTCCTTGTACTTGAT 57.451 36.000 0.00 0.00 0.00 2.57
3104 4542 7.094506 GGTGGTAAATTTACTGTTAGGTCCTTG 60.095 40.741 23.89 0.00 34.16 3.61
3115 4553 6.435904 TGGGAAGATTGGTGGTAAATTTACTG 59.564 38.462 23.89 0.00 34.16 2.74
3121 4559 5.588845 TGAATGGGAAGATTGGTGGTAAAT 58.411 37.500 0.00 0.00 0.00 1.40
3148 4586 5.091261 AGGCTCTGTTTCGATGTTAATCT 57.909 39.130 0.00 0.00 0.00 2.40
3159 4597 7.425606 TGTTAAATCAGAAAAGGCTCTGTTTC 58.574 34.615 2.59 2.59 42.93 2.78
3165 4603 6.503524 TGTGTTGTTAAATCAGAAAAGGCTC 58.496 36.000 0.00 0.00 0.00 4.70
3204 4645 7.334858 GGGATTAGATTTAGAAGAGCCCTATG 58.665 42.308 0.00 0.00 0.00 2.23
3260 4706 5.492855 AACTGGCCATAACACTTGTACTA 57.507 39.130 5.51 0.00 0.00 1.82
3271 4717 3.208747 GCCTAGCTAAACTGGCCATAA 57.791 47.619 5.51 0.00 36.89 1.90
3272 4718 2.930826 GCCTAGCTAAACTGGCCATA 57.069 50.000 5.51 0.00 36.89 2.74
3273 4719 3.808984 GCCTAGCTAAACTGGCCAT 57.191 52.632 5.51 0.00 36.89 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.