Multiple sequence alignment - TraesCS7D01G418600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G418600 chr7D 100.000 3377 0 0 1 3377 538141955 538138579 0.000000e+00 6237.0
1 TraesCS7D01G418600 chr7D 89.614 1348 79 28 879 2191 538602409 538603730 0.000000e+00 1657.0
2 TraesCS7D01G418600 chr7D 87.356 1471 116 39 879 2301 538661818 538663266 0.000000e+00 1622.0
3 TraesCS7D01G418600 chr7D 84.306 1714 183 56 516 2191 538585641 538587306 0.000000e+00 1596.0
4 TraesCS7D01G418600 chr7D 88.248 1353 95 28 864 2191 538594521 538595834 0.000000e+00 1559.0
5 TraesCS7D01G418600 chr7D 88.718 585 31 13 515 1093 538240494 538239939 0.000000e+00 682.0
6 TraesCS7D01G418600 chr7D 79.843 764 80 36 512 1223 538333897 538333156 1.090000e-134 490.0
7 TraesCS7D01G418600 chr7A 90.501 1916 112 43 515 2393 619167582 619165700 0.000000e+00 2466.0
8 TraesCS7D01G418600 chr7A 90.479 1775 92 42 591 2321 619577222 619575481 0.000000e+00 2270.0
9 TraesCS7D01G418600 chr7A 89.113 1534 112 36 893 2393 620171357 620172868 0.000000e+00 1857.0
10 TraesCS7D01G418600 chr7A 88.296 1444 120 33 893 2302 620201263 620202691 0.000000e+00 1685.0
11 TraesCS7D01G418600 chr7A 89.873 553 44 9 1834 2377 619291776 619291227 0.000000e+00 701.0
12 TraesCS7D01G418600 chr7A 91.304 529 19 13 2721 3237 619290852 619290339 0.000000e+00 697.0
13 TraesCS7D01G418600 chr7A 88.943 407 18 10 2985 3377 619290262 619289869 8.480000e-131 477.0
14 TraesCS7D01G418600 chr7A 89.169 397 22 8 2986 3377 619574796 619574416 3.050000e-130 475.0
15 TraesCS7D01G418600 chr7A 89.694 359 20 11 2985 3334 619164926 619164576 3.090000e-120 442.0
16 TraesCS7D01G418600 chr7A 87.037 378 25 10 2409 2762 619165445 619165068 4.060000e-109 405.0
17 TraesCS7D01G418600 chr7A 86.798 356 18 12 2975 3316 620173907 620174247 1.480000e-98 370.0
18 TraesCS7D01G418600 chr7A 89.961 259 18 3 2710 2960 619575042 619574784 9.030000e-86 327.0
19 TraesCS7D01G418600 chr7A 85.489 317 21 9 2385 2676 619575357 619575041 1.180000e-79 307.0
20 TraesCS7D01G418600 chr7A 83.483 333 17 12 2526 2831 620173070 620173391 3.320000e-70 276.0
21 TraesCS7D01G418600 chr7A 90.244 164 8 5 2799 2960 619165070 619164913 1.230000e-49 207.0
22 TraesCS7D01G418600 chr7A 81.545 233 31 2 1 232 619167825 619167604 7.440000e-42 182.0
23 TraesCS7D01G418600 chr7A 92.079 101 8 0 2515 2615 619291015 619290915 3.510000e-30 143.0
24 TraesCS7D01G418600 chr7A 93.750 80 5 0 515 594 619577596 619577517 1.650000e-23 121.0
25 TraesCS7D01G418600 chr7B 90.598 1723 120 21 515 2227 580886266 580884576 0.000000e+00 2246.0
26 TraesCS7D01G418600 chr7B 87.986 1465 109 46 864 2301 581333183 581334607 0.000000e+00 1668.0
27 TraesCS7D01G418600 chr7B 84.589 1752 156 71 516 2204 580970922 580969222 0.000000e+00 1635.0
28 TraesCS7D01G418600 chr7B 87.789 1343 110 30 863 2191 581313529 581314831 0.000000e+00 1522.0
29 TraesCS7D01G418600 chr7B 92.473 279 14 4 2686 2960 580883975 580883700 3.160000e-105 392.0
30 TraesCS7D01G418600 chr7B 90.102 293 15 5 3034 3325 580883683 580883404 5.320000e-98 368.0
31 TraesCS7D01G418600 chr7B 88.818 313 16 8 2391 2684 580884327 580884015 1.910000e-97 366.0
32 TraesCS7D01G418600 chr7B 100.000 30 0 0 3348 3377 580875982 580875953 4.710000e-04 56.5
33 TraesCS7D01G418600 chr1A 79.932 294 42 12 231 510 404540545 404540835 2.050000e-47 200.0
34 TraesCS7D01G418600 chr1A 79.781 183 30 5 306 484 346640687 346640508 3.540000e-25 126.0
35 TraesCS7D01G418600 chr1A 89.855 69 7 0 226 294 542765900 542765968 4.640000e-14 89.8
36 TraesCS7D01G418600 chr5B 78.351 291 51 10 229 512 415125546 415125831 9.630000e-41 178.0
37 TraesCS7D01G418600 chr5B 76.307 287 61 7 229 512 547571326 547571044 2.720000e-31 147.0
38 TraesCS7D01G418600 chr6B 85.897 156 18 3 231 385 656522066 656521914 2.700000e-36 163.0
39 TraesCS7D01G418600 chr6B 84.270 89 10 3 231 317 405057596 405057510 2.160000e-12 84.2
40 TraesCS7D01G418600 chr1D 81.221 213 31 7 306 513 274251936 274251728 2.700000e-36 163.0
41 TraesCS7D01G418600 chr1D 89.706 68 6 1 228 294 283043302 283043235 6.000000e-13 86.1
42 TraesCS7D01G418600 chr6D 85.625 160 15 7 231 386 434139516 434139361 9.700000e-36 161.0
43 TraesCS7D01G418600 chr5D 86.792 106 13 1 25 130 497809633 497809529 2.130000e-22 117.0
44 TraesCS7D01G418600 chr5D 84.821 112 8 4 23 134 110878164 110878062 1.660000e-18 104.0
45 TraesCS7D01G418600 chr5D 83.516 91 13 2 228 317 410442650 410442561 2.160000e-12 84.2
46 TraesCS7D01G418600 chr5A 74.919 307 51 19 227 513 650556485 650556185 2.130000e-22 117.0
47 TraesCS7D01G418600 chr5A 81.818 132 23 1 3 134 461003998 461003868 3.560000e-20 110.0
48 TraesCS7D01G418600 chr4B 75.000 268 50 11 228 480 649244330 649244595 1.280000e-19 108.0
49 TraesCS7D01G418600 chr4B 90.411 73 6 1 316 387 660091844 660091916 9.980000e-16 95.3
50 TraesCS7D01G418600 chr3A 72.575 299 58 16 231 510 482908733 482908440 3.610000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G418600 chr7D 538138579 538141955 3376 True 6237.000000 6237 100.000000 1 3377 1 chr7D.!!$R1 3376
1 TraesCS7D01G418600 chr7D 538602409 538603730 1321 False 1657.000000 1657 89.614000 879 2191 1 chr7D.!!$F3 1312
2 TraesCS7D01G418600 chr7D 538661818 538663266 1448 False 1622.000000 1622 87.356000 879 2301 1 chr7D.!!$F4 1422
3 TraesCS7D01G418600 chr7D 538585641 538587306 1665 False 1596.000000 1596 84.306000 516 2191 1 chr7D.!!$F1 1675
4 TraesCS7D01G418600 chr7D 538594521 538595834 1313 False 1559.000000 1559 88.248000 864 2191 1 chr7D.!!$F2 1327
5 TraesCS7D01G418600 chr7D 538239939 538240494 555 True 682.000000 682 88.718000 515 1093 1 chr7D.!!$R2 578
6 TraesCS7D01G418600 chr7D 538333156 538333897 741 True 490.000000 490 79.843000 512 1223 1 chr7D.!!$R3 711
7 TraesCS7D01G418600 chr7A 620201263 620202691 1428 False 1685.000000 1685 88.296000 893 2302 1 chr7A.!!$F1 1409
8 TraesCS7D01G418600 chr7A 620171357 620174247 2890 False 834.333333 1857 86.464667 893 3316 3 chr7A.!!$F2 2423
9 TraesCS7D01G418600 chr7A 619164576 619167825 3249 True 740.400000 2466 87.804200 1 3334 5 chr7A.!!$R1 3333
10 TraesCS7D01G418600 chr7A 619574416 619577596 3180 True 700.000000 2270 89.769600 515 3377 5 chr7A.!!$R3 2862
11 TraesCS7D01G418600 chr7A 619289869 619291776 1907 True 504.500000 701 90.549750 1834 3377 4 chr7A.!!$R2 1543
12 TraesCS7D01G418600 chr7B 581333183 581334607 1424 False 1668.000000 1668 87.986000 864 2301 1 chr7B.!!$F2 1437
13 TraesCS7D01G418600 chr7B 580969222 580970922 1700 True 1635.000000 1635 84.589000 516 2204 1 chr7B.!!$R2 1688
14 TraesCS7D01G418600 chr7B 581313529 581314831 1302 False 1522.000000 1522 87.789000 863 2191 1 chr7B.!!$F1 1328
15 TraesCS7D01G418600 chr7B 580883404 580886266 2862 True 843.000000 2246 90.497750 515 3325 4 chr7B.!!$R3 2810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.107508 CTCGGTGTCATTGGCCATCT 60.108 55.0 6.09 0.00 0.00 2.90 F
177 178 0.254178 ATCCATGGATATCAGCCGCC 59.746 55.0 26.25 0.00 32.36 6.13 F
488 490 0.973632 CACCATGTAGGCGGGCTATA 59.026 55.0 14.77 12.46 43.14 1.31 F
1107 1515 0.108898 CTAGCTGCTTCAGTGAGCGT 60.109 55.0 7.79 1.69 45.64 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1094 1496 0.110464 GAAAGCACGCTCACTGAAGC 60.110 55.0 0.0 0.0 38.97 3.86 R
1095 1497 0.162507 CGAAAGCACGCTCACTGAAG 59.837 55.0 0.0 0.0 0.00 3.02 R
1677 2142 0.179129 GGCAATGGCGATGAACCAAG 60.179 55.0 0.0 0.0 41.49 3.61 R
2524 3422 0.108138 ACAGCAGCGTAGTTCCATCC 60.108 55.0 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.359850 GCTCGGTGTCATTGGCCA 60.360 61.111 0.00 0.00 0.00 5.36
31 32 1.750399 GCTCGGTGTCATTGGCCAT 60.750 57.895 6.09 0.00 0.00 4.40
33 34 0.107508 CTCGGTGTCATTGGCCATCT 60.108 55.000 6.09 0.00 0.00 2.90
68 69 3.153825 ACCAACCCGTCGGTGAAT 58.846 55.556 11.06 0.00 43.71 2.57
131 132 4.388499 CACCACCGGACGGGGAAG 62.388 72.222 15.72 2.24 42.48 3.46
148 149 4.344865 GGCTCGCCAAAGGGACCA 62.345 66.667 2.41 0.00 35.59 4.02
151 152 1.815421 CTCGCCAAAGGGACCATCG 60.815 63.158 0.00 0.00 35.59 3.84
153 154 2.106683 CGCCAAAGGGACCATCGTC 61.107 63.158 0.00 0.00 38.38 4.20
168 169 2.694616 TCGTCCCTGATCCATGGATA 57.305 50.000 27.38 14.15 34.60 2.59
169 170 3.190383 TCGTCCCTGATCCATGGATAT 57.810 47.619 27.38 7.51 34.60 1.63
176 177 1.065926 TGATCCATGGATATCAGCCGC 60.066 52.381 27.38 12.52 34.60 6.53
177 178 0.254178 ATCCATGGATATCAGCCGCC 59.746 55.000 26.25 0.00 32.36 6.13
218 220 1.049402 AGAAGGGCCCGCTTATACTC 58.951 55.000 18.44 4.19 0.00 2.59
223 225 4.057063 AGGGCCCGCTTATACTCTTATA 57.943 45.455 18.44 0.00 0.00 0.98
232 234 9.175312 CCCGCTTATACTCTTATATCACTTAGA 57.825 37.037 0.00 0.00 0.00 2.10
234 236 9.710979 CGCTTATACTCTTATATCACTTAGAGC 57.289 37.037 0.00 0.00 38.10 4.09
239 241 7.847711 ACTCTTATATCACTTAGAGCATGGT 57.152 36.000 0.00 0.00 38.10 3.55
240 242 8.256356 ACTCTTATATCACTTAGAGCATGGTT 57.744 34.615 0.00 0.00 38.10 3.67
251 253 9.360093 CACTTAGAGCATGGTTAATAGTATAGC 57.640 37.037 0.00 0.00 0.00 2.97
252 254 8.532819 ACTTAGAGCATGGTTAATAGTATAGCC 58.467 37.037 0.00 0.00 0.00 3.93
253 255 6.935240 AGAGCATGGTTAATAGTATAGCCA 57.065 37.500 0.00 3.65 39.96 4.75
254 256 7.316393 AGAGCATGGTTAATAGTATAGCCAA 57.684 36.000 0.00 0.00 39.25 4.52
255 257 7.922382 AGAGCATGGTTAATAGTATAGCCAAT 58.078 34.615 0.00 0.00 39.25 3.16
256 258 8.386264 AGAGCATGGTTAATAGTATAGCCAATT 58.614 33.333 0.00 0.00 39.25 2.32
257 259 8.340618 AGCATGGTTAATAGTATAGCCAATTG 57.659 34.615 0.00 0.00 39.25 2.32
258 260 7.029563 GCATGGTTAATAGTATAGCCAATTGC 58.970 38.462 0.00 8.84 39.25 3.56
277 279 2.643551 GCTGGCTATAAGCAACTTCCA 58.356 47.619 0.78 0.00 44.75 3.53
278 280 3.217626 GCTGGCTATAAGCAACTTCCAT 58.782 45.455 0.78 0.00 44.75 3.41
279 281 3.004106 GCTGGCTATAAGCAACTTCCATG 59.996 47.826 0.78 0.00 44.75 3.66
280 282 4.202441 CTGGCTATAAGCAACTTCCATGT 58.798 43.478 0.78 0.00 44.75 3.21
281 283 4.199310 TGGCTATAAGCAACTTCCATGTC 58.801 43.478 0.78 0.00 44.75 3.06
282 284 4.199310 GGCTATAAGCAACTTCCATGTCA 58.801 43.478 0.78 0.00 44.75 3.58
283 285 4.823989 GGCTATAAGCAACTTCCATGTCAT 59.176 41.667 0.78 0.00 44.75 3.06
284 286 5.300286 GGCTATAAGCAACTTCCATGTCATT 59.700 40.000 0.78 0.00 44.75 2.57
285 287 6.183360 GGCTATAAGCAACTTCCATGTCATTT 60.183 38.462 0.78 0.00 44.75 2.32
286 288 6.694411 GCTATAAGCAACTTCCATGTCATTTG 59.306 38.462 0.00 0.00 41.89 2.32
287 289 3.308438 AGCAACTTCCATGTCATTTGC 57.692 42.857 10.05 10.05 39.69 3.68
288 290 2.629137 AGCAACTTCCATGTCATTTGCA 59.371 40.909 17.29 0.00 41.43 4.08
289 291 2.991190 GCAACTTCCATGTCATTTGCAG 59.009 45.455 12.30 0.00 39.30 4.41
290 292 2.991190 CAACTTCCATGTCATTTGCAGC 59.009 45.455 0.00 0.00 0.00 5.25
291 293 1.547372 ACTTCCATGTCATTTGCAGCC 59.453 47.619 0.00 0.00 0.00 4.85
292 294 1.546923 CTTCCATGTCATTTGCAGCCA 59.453 47.619 0.00 0.00 0.00 4.75
293 295 1.855295 TCCATGTCATTTGCAGCCAT 58.145 45.000 0.00 0.00 0.00 4.40
294 296 2.181125 TCCATGTCATTTGCAGCCATT 58.819 42.857 0.00 0.00 0.00 3.16
295 297 2.093921 TCCATGTCATTTGCAGCCATTG 60.094 45.455 0.00 0.00 0.00 2.82
306 308 2.838386 CAGCCATTGCATGTAGTCAC 57.162 50.000 0.00 0.00 41.13 3.67
307 309 2.362736 CAGCCATTGCATGTAGTCACT 58.637 47.619 0.00 0.00 41.13 3.41
308 310 3.534554 CAGCCATTGCATGTAGTCACTA 58.465 45.455 0.00 0.00 41.13 2.74
309 311 3.940852 CAGCCATTGCATGTAGTCACTAA 59.059 43.478 0.00 0.00 41.13 2.24
310 312 4.577693 CAGCCATTGCATGTAGTCACTAAT 59.422 41.667 0.00 0.00 41.13 1.73
311 313 5.759763 CAGCCATTGCATGTAGTCACTAATA 59.240 40.000 0.00 0.00 41.13 0.98
312 314 5.760253 AGCCATTGCATGTAGTCACTAATAC 59.240 40.000 0.00 0.00 41.13 1.89
313 315 5.527214 GCCATTGCATGTAGTCACTAATACA 59.473 40.000 0.00 0.00 36.40 2.29
314 316 6.038161 GCCATTGCATGTAGTCACTAATACAA 59.962 38.462 0.00 0.00 35.64 2.41
315 317 7.255242 GCCATTGCATGTAGTCACTAATACAAT 60.255 37.037 0.00 0.00 35.64 2.71
316 318 9.271828 CCATTGCATGTAGTCACTAATACAATA 57.728 33.333 0.00 0.00 35.64 1.90
319 321 8.887036 TGCATGTAGTCACTAATACAATAAGG 57.113 34.615 0.00 0.00 35.64 2.69
320 322 8.482943 TGCATGTAGTCACTAATACAATAAGGT 58.517 33.333 0.00 0.00 35.64 3.50
321 323 9.326413 GCATGTAGTCACTAATACAATAAGGTT 57.674 33.333 0.00 0.00 35.64 3.50
323 325 9.832445 ATGTAGTCACTAATACAATAAGGTTGG 57.168 33.333 0.00 0.00 35.64 3.77
324 326 7.767198 TGTAGTCACTAATACAATAAGGTTGGC 59.233 37.037 0.00 0.00 0.00 4.52
325 327 6.958767 AGTCACTAATACAATAAGGTTGGCT 58.041 36.000 0.00 0.00 0.00 4.75
326 328 8.086143 AGTCACTAATACAATAAGGTTGGCTA 57.914 34.615 0.00 0.00 0.00 3.93
327 329 8.714906 AGTCACTAATACAATAAGGTTGGCTAT 58.285 33.333 0.00 0.00 0.00 2.97
328 330 9.338622 GTCACTAATACAATAAGGTTGGCTATT 57.661 33.333 0.00 0.00 0.00 1.73
336 338 8.320338 ACAATAAGGTTGGCTATTAGACTAGT 57.680 34.615 0.00 0.00 0.00 2.57
337 339 9.430399 ACAATAAGGTTGGCTATTAGACTAGTA 57.570 33.333 0.00 0.00 0.00 1.82
338 340 9.694137 CAATAAGGTTGGCTATTAGACTAGTAC 57.306 37.037 0.00 0.00 0.00 2.73
339 341 9.657728 AATAAGGTTGGCTATTAGACTAGTACT 57.342 33.333 0.00 0.00 0.00 2.73
340 342 7.974730 AAGGTTGGCTATTAGACTAGTACTT 57.025 36.000 0.00 0.00 0.00 2.24
341 343 7.974730 AGGTTGGCTATTAGACTAGTACTTT 57.025 36.000 0.00 0.00 0.00 2.66
342 344 8.376803 AGGTTGGCTATTAGACTAGTACTTTT 57.623 34.615 0.00 0.00 0.00 2.27
343 345 8.476447 AGGTTGGCTATTAGACTAGTACTTTTC 58.524 37.037 0.00 0.00 0.00 2.29
344 346 8.476447 GGTTGGCTATTAGACTAGTACTTTTCT 58.524 37.037 0.00 5.93 0.00 2.52
345 347 9.872721 GTTGGCTATTAGACTAGTACTTTTCTT 57.127 33.333 0.00 0.00 0.00 2.52
347 349 9.251440 TGGCTATTAGACTAGTACTTTTCTTCA 57.749 33.333 0.00 0.00 0.00 3.02
348 350 9.518906 GGCTATTAGACTAGTACTTTTCTTCAC 57.481 37.037 0.00 0.00 0.00 3.18
349 351 9.518906 GCTATTAGACTAGTACTTTTCTTCACC 57.481 37.037 0.00 0.00 0.00 4.02
353 355 7.842887 AGACTAGTACTTTTCTTCACCTTCT 57.157 36.000 0.00 0.00 0.00 2.85
354 356 7.888424 AGACTAGTACTTTTCTTCACCTTCTC 58.112 38.462 0.00 0.00 0.00 2.87
355 357 7.726738 AGACTAGTACTTTTCTTCACCTTCTCT 59.273 37.037 0.00 0.00 0.00 3.10
356 358 7.888424 ACTAGTACTTTTCTTCACCTTCTCTC 58.112 38.462 0.00 0.00 0.00 3.20
357 359 6.987403 AGTACTTTTCTTCACCTTCTCTCT 57.013 37.500 0.00 0.00 0.00 3.10
358 360 7.368198 AGTACTTTTCTTCACCTTCTCTCTT 57.632 36.000 0.00 0.00 0.00 2.85
359 361 7.797062 AGTACTTTTCTTCACCTTCTCTCTTT 58.203 34.615 0.00 0.00 0.00 2.52
360 362 7.929245 AGTACTTTTCTTCACCTTCTCTCTTTC 59.071 37.037 0.00 0.00 0.00 2.62
361 363 6.894682 ACTTTTCTTCACCTTCTCTCTTTCT 58.105 36.000 0.00 0.00 0.00 2.52
362 364 6.989759 ACTTTTCTTCACCTTCTCTCTTTCTC 59.010 38.462 0.00 0.00 0.00 2.87
363 365 6.739331 TTTCTTCACCTTCTCTCTTTCTCT 57.261 37.500 0.00 0.00 0.00 3.10
364 366 6.739331 TTCTTCACCTTCTCTCTTTCTCTT 57.261 37.500 0.00 0.00 0.00 2.85
365 367 6.739331 TCTTCACCTTCTCTCTTTCTCTTT 57.261 37.500 0.00 0.00 0.00 2.52
366 368 6.754193 TCTTCACCTTCTCTCTTTCTCTTTC 58.246 40.000 0.00 0.00 0.00 2.62
367 369 6.325028 TCTTCACCTTCTCTCTTTCTCTTTCA 59.675 38.462 0.00 0.00 0.00 2.69
368 370 6.678568 TCACCTTCTCTCTTTCTCTTTCAT 57.321 37.500 0.00 0.00 0.00 2.57
369 371 7.072263 TCACCTTCTCTCTTTCTCTTTCATT 57.928 36.000 0.00 0.00 0.00 2.57
370 372 6.933521 TCACCTTCTCTCTTTCTCTTTCATTG 59.066 38.462 0.00 0.00 0.00 2.82
371 373 6.709846 CACCTTCTCTCTTTCTCTTTCATTGT 59.290 38.462 0.00 0.00 0.00 2.71
372 374 7.875041 CACCTTCTCTCTTTCTCTTTCATTGTA 59.125 37.037 0.00 0.00 0.00 2.41
373 375 8.601546 ACCTTCTCTCTTTCTCTTTCATTGTAT 58.398 33.333 0.00 0.00 0.00 2.29
374 376 9.447157 CCTTCTCTCTTTCTCTTTCATTGTATT 57.553 33.333 0.00 0.00 0.00 1.89
390 392 9.781834 TTCATTGTATTTATTACTTTTGCGGAG 57.218 29.630 0.00 0.00 0.00 4.63
405 407 2.264109 CGGAGCACGCATATAGGTAG 57.736 55.000 0.00 0.00 34.82 3.18
406 408 1.135373 CGGAGCACGCATATAGGTAGG 60.135 57.143 0.00 0.00 34.82 3.18
407 409 1.404315 GGAGCACGCATATAGGTAGGC 60.404 57.143 0.00 0.00 34.41 3.93
408 410 1.546476 GAGCACGCATATAGGTAGGCT 59.454 52.381 0.00 0.00 35.55 4.58
409 411 1.546476 AGCACGCATATAGGTAGGCTC 59.454 52.381 0.00 0.00 35.55 4.70
410 412 1.546476 GCACGCATATAGGTAGGCTCT 59.454 52.381 0.00 0.00 35.55 4.09
411 413 2.028930 GCACGCATATAGGTAGGCTCTT 60.029 50.000 0.00 0.00 35.55 2.85
412 414 3.839293 CACGCATATAGGTAGGCTCTTC 58.161 50.000 0.00 0.00 35.55 2.87
413 415 3.255888 CACGCATATAGGTAGGCTCTTCA 59.744 47.826 0.00 0.00 35.55 3.02
414 416 4.081972 CACGCATATAGGTAGGCTCTTCAT 60.082 45.833 0.00 0.00 35.55 2.57
415 417 5.125578 CACGCATATAGGTAGGCTCTTCATA 59.874 44.000 0.00 0.00 35.55 2.15
416 418 5.715279 ACGCATATAGGTAGGCTCTTCATAA 59.285 40.000 0.00 0.00 35.55 1.90
417 419 6.210784 ACGCATATAGGTAGGCTCTTCATAAA 59.789 38.462 0.00 0.00 35.55 1.40
418 420 7.097192 CGCATATAGGTAGGCTCTTCATAAAA 58.903 38.462 0.00 0.00 35.55 1.52
419 421 7.276658 CGCATATAGGTAGGCTCTTCATAAAAG 59.723 40.741 0.00 0.00 35.55 2.27
420 422 7.065204 GCATATAGGTAGGCTCTTCATAAAAGC 59.935 40.741 0.00 0.00 34.89 3.51
421 423 6.755542 ATAGGTAGGCTCTTCATAAAAGCT 57.244 37.500 0.00 0.00 36.29 3.74
422 424 5.443230 AGGTAGGCTCTTCATAAAAGCTT 57.557 39.130 0.00 0.00 36.29 3.74
423 425 6.561519 AGGTAGGCTCTTCATAAAAGCTTA 57.438 37.500 0.00 0.00 36.29 3.09
424 426 7.142995 AGGTAGGCTCTTCATAAAAGCTTAT 57.857 36.000 0.00 0.00 36.29 1.73
425 427 7.578203 AGGTAGGCTCTTCATAAAAGCTTATT 58.422 34.615 0.00 0.00 36.29 1.40
426 428 8.055790 AGGTAGGCTCTTCATAAAAGCTTATTT 58.944 33.333 0.00 0.00 36.29 1.40
427 429 8.346300 GGTAGGCTCTTCATAAAAGCTTATTTC 58.654 37.037 0.00 0.00 36.29 2.17
428 430 7.340122 AGGCTCTTCATAAAAGCTTATTTCC 57.660 36.000 0.00 0.00 36.29 3.13
429 431 6.891908 AGGCTCTTCATAAAAGCTTATTTCCA 59.108 34.615 0.00 0.00 36.29 3.53
430 432 6.975197 GGCTCTTCATAAAAGCTTATTTCCAC 59.025 38.462 0.00 0.00 36.29 4.02
431 433 6.975197 GCTCTTCATAAAAGCTTATTTCCACC 59.025 38.462 0.00 0.00 33.23 4.61
432 434 7.404671 TCTTCATAAAAGCTTATTTCCACCC 57.595 36.000 0.00 0.00 0.00 4.61
433 435 7.182060 TCTTCATAAAAGCTTATTTCCACCCT 58.818 34.615 0.00 0.00 0.00 4.34
434 436 7.673926 TCTTCATAAAAGCTTATTTCCACCCTT 59.326 33.333 0.00 0.00 0.00 3.95
435 437 7.790782 TCATAAAAGCTTATTTCCACCCTTT 57.209 32.000 0.00 0.00 0.00 3.11
436 438 8.201242 TCATAAAAGCTTATTTCCACCCTTTT 57.799 30.769 0.00 0.00 36.70 2.27
437 439 8.655901 TCATAAAAGCTTATTTCCACCCTTTTT 58.344 29.630 0.00 0.00 35.12 1.94
438 440 8.935844 CATAAAAGCTTATTTCCACCCTTTTTC 58.064 33.333 0.00 0.00 35.12 2.29
439 441 6.493189 AAAGCTTATTTCCACCCTTTTTCA 57.507 33.333 0.00 0.00 0.00 2.69
440 442 6.493189 AAGCTTATTTCCACCCTTTTTCAA 57.507 33.333 0.00 0.00 0.00 2.69
441 443 5.853936 AGCTTATTTCCACCCTTTTTCAAC 58.146 37.500 0.00 0.00 0.00 3.18
442 444 4.684242 GCTTATTTCCACCCTTTTTCAACG 59.316 41.667 0.00 0.00 0.00 4.10
443 445 5.737922 GCTTATTTCCACCCTTTTTCAACGT 60.738 40.000 0.00 0.00 0.00 3.99
444 446 6.515365 GCTTATTTCCACCCTTTTTCAACGTA 60.515 38.462 0.00 0.00 0.00 3.57
445 447 7.527568 TTATTTCCACCCTTTTTCAACGTAT 57.472 32.000 0.00 0.00 0.00 3.06
446 448 5.441709 TTTCCACCCTTTTTCAACGTATC 57.558 39.130 0.00 0.00 0.00 2.24
447 449 4.360951 TCCACCCTTTTTCAACGTATCT 57.639 40.909 0.00 0.00 0.00 1.98
448 450 4.320870 TCCACCCTTTTTCAACGTATCTC 58.679 43.478 0.00 0.00 0.00 2.75
449 451 4.041198 TCCACCCTTTTTCAACGTATCTCT 59.959 41.667 0.00 0.00 0.00 3.10
450 452 4.392138 CCACCCTTTTTCAACGTATCTCTC 59.608 45.833 0.00 0.00 0.00 3.20
451 453 4.392138 CACCCTTTTTCAACGTATCTCTCC 59.608 45.833 0.00 0.00 0.00 3.71
452 454 4.286291 ACCCTTTTTCAACGTATCTCTCCT 59.714 41.667 0.00 0.00 0.00 3.69
453 455 5.221864 ACCCTTTTTCAACGTATCTCTCCTT 60.222 40.000 0.00 0.00 0.00 3.36
454 456 5.351740 CCCTTTTTCAACGTATCTCTCCTTC 59.648 44.000 0.00 0.00 0.00 3.46
455 457 5.932303 CCTTTTTCAACGTATCTCTCCTTCA 59.068 40.000 0.00 0.00 0.00 3.02
456 458 6.128526 CCTTTTTCAACGTATCTCTCCTTCAC 60.129 42.308 0.00 0.00 0.00 3.18
457 459 5.462530 TTTCAACGTATCTCTCCTTCACA 57.537 39.130 0.00 0.00 0.00 3.58
458 460 5.661056 TTCAACGTATCTCTCCTTCACAT 57.339 39.130 0.00 0.00 0.00 3.21
459 461 6.769134 TTCAACGTATCTCTCCTTCACATA 57.231 37.500 0.00 0.00 0.00 2.29
460 462 6.378710 TCAACGTATCTCTCCTTCACATAG 57.621 41.667 0.00 0.00 0.00 2.23
461 463 6.120220 TCAACGTATCTCTCCTTCACATAGA 58.880 40.000 0.00 0.00 0.00 1.98
462 464 6.038382 TCAACGTATCTCTCCTTCACATAGAC 59.962 42.308 0.00 0.00 0.00 2.59
463 465 5.437946 ACGTATCTCTCCTTCACATAGACA 58.562 41.667 0.00 0.00 0.00 3.41
464 466 5.886474 ACGTATCTCTCCTTCACATAGACAA 59.114 40.000 0.00 0.00 0.00 3.18
465 467 6.377429 ACGTATCTCTCCTTCACATAGACAAA 59.623 38.462 0.00 0.00 0.00 2.83
466 468 7.093902 ACGTATCTCTCCTTCACATAGACAAAA 60.094 37.037 0.00 0.00 0.00 2.44
467 469 7.759886 CGTATCTCTCCTTCACATAGACAAAAA 59.240 37.037 0.00 0.00 0.00 1.94
483 485 1.253100 AAAAACACCATGTAGGCGGG 58.747 50.000 0.00 0.00 43.14 6.13
484 486 1.248101 AAAACACCATGTAGGCGGGC 61.248 55.000 0.00 0.00 43.14 6.13
485 487 2.137177 AAACACCATGTAGGCGGGCT 62.137 55.000 9.68 9.68 43.14 5.19
486 488 1.268992 AACACCATGTAGGCGGGCTA 61.269 55.000 7.26 7.26 43.14 3.93
487 489 1.054406 ACACCATGTAGGCGGGCTAT 61.054 55.000 14.77 0.00 43.14 2.97
488 490 0.973632 CACCATGTAGGCGGGCTATA 59.026 55.000 14.77 12.46 43.14 1.31
489 491 1.346395 CACCATGTAGGCGGGCTATAA 59.654 52.381 14.77 6.95 43.14 0.98
490 492 1.623811 ACCATGTAGGCGGGCTATAAG 59.376 52.381 14.77 8.90 43.14 1.73
491 493 1.676014 CCATGTAGGCGGGCTATAAGC 60.676 57.143 14.77 2.43 41.46 3.09
505 507 5.485662 GCTATAAGCCCACTTTGTACTTG 57.514 43.478 0.00 0.00 37.33 3.16
506 508 4.201920 GCTATAAGCCCACTTTGTACTTGC 60.202 45.833 0.00 0.00 37.33 4.01
507 509 2.364972 AAGCCCACTTTGTACTTGCT 57.635 45.000 0.00 0.00 29.41 3.91
508 510 1.897560 AGCCCACTTTGTACTTGCTC 58.102 50.000 0.00 0.00 0.00 4.26
509 511 1.421646 AGCCCACTTTGTACTTGCTCT 59.578 47.619 0.00 0.00 0.00 4.09
510 512 2.158608 AGCCCACTTTGTACTTGCTCTT 60.159 45.455 0.00 0.00 0.00 2.85
511 513 3.072476 AGCCCACTTTGTACTTGCTCTTA 59.928 43.478 0.00 0.00 0.00 2.10
512 514 4.010349 GCCCACTTTGTACTTGCTCTTAT 58.990 43.478 0.00 0.00 0.00 1.73
513 515 5.045869 AGCCCACTTTGTACTTGCTCTTATA 60.046 40.000 0.00 0.00 0.00 0.98
968 1341 3.418995 CAGAACCATCCATCCATCCATC 58.581 50.000 0.00 0.00 0.00 3.51
975 1348 1.148949 CATCCATCCATCGGGCACA 59.851 57.895 0.00 0.00 0.00 4.57
983 1356 4.760047 ATCGGGCACACCACGCTC 62.760 66.667 0.00 0.00 40.22 5.03
1094 1496 4.727507 TCAACCTTCTTCTAGCTAGCTG 57.272 45.455 27.68 16.48 0.00 4.24
1095 1497 3.118956 TCAACCTTCTTCTAGCTAGCTGC 60.119 47.826 27.68 0.00 43.29 5.25
1105 1513 2.382139 GCTAGCTGCTTCAGTGAGC 58.618 57.895 7.79 5.70 43.00 4.26
1107 1515 0.108898 CTAGCTGCTTCAGTGAGCGT 60.109 55.000 7.79 1.69 45.64 5.07
1113 1526 0.110464 GCTTCAGTGAGCGTGCTTTC 60.110 55.000 0.00 0.00 32.23 2.62
1179 1605 3.602513 CTGCTCGCCTCTTGTGCCT 62.603 63.158 0.00 0.00 0.00 4.75
1677 2142 4.485163 GAACCCAAAGCACATCATGTAAC 58.515 43.478 0.00 0.00 0.00 2.50
1709 2177 1.605202 CCATTGCCCAACCTTCGTTTG 60.605 52.381 0.00 0.00 0.00 2.93
1710 2178 1.068434 CATTGCCCAACCTTCGTTTGT 59.932 47.619 0.00 0.00 0.00 2.83
1711 2179 1.187087 TTGCCCAACCTTCGTTTGTT 58.813 45.000 0.00 0.00 0.00 2.83
1716 2184 2.290641 CCCAACCTTCGTTTGTTCTCAG 59.709 50.000 0.00 0.00 0.00 3.35
1808 2305 1.040646 GACATGCCGATCAGGGACTA 58.959 55.000 0.00 0.00 45.60 2.59
2218 2726 2.042831 CCACCCAGCAAGCTAGCAC 61.043 63.158 18.83 5.87 36.85 4.40
2223 2731 3.238232 CAGCAAGCTAGCACTGGAA 57.762 52.632 18.83 0.00 36.85 3.53
2237 2748 2.095110 CACTGGAACGTCCGTGTATACA 60.095 50.000 0.08 0.08 40.17 2.29
2257 2801 2.109181 GATCGCCGGAGAAAGGGG 59.891 66.667 13.28 0.00 42.33 4.79
2329 2893 0.802494 GTGAAATGTAGGCGGTGGTG 59.198 55.000 0.00 0.00 0.00 4.17
2340 2908 2.040544 CGGTGGTGGATCCTTGTGC 61.041 63.158 14.23 0.00 37.07 4.57
2494 3353 5.123820 GCCAGCAGTTGTTATTCACTGATAA 59.876 40.000 3.48 0.00 31.65 1.75
2504 3363 4.725790 ATTCACTGATAAAGCTTTGCCC 57.274 40.909 22.02 10.57 0.00 5.36
2524 3422 1.340658 CGTCAATCAGTCACTCGGTG 58.659 55.000 0.00 0.00 34.45 4.94
2606 3533 1.104630 GCCTAGAAGACCACTAGCGT 58.895 55.000 0.00 0.00 36.85 5.07
2615 3554 2.822215 CCACTAGCGTGATAGGGGT 58.178 57.895 5.26 0.00 43.97 4.95
2626 3565 5.477984 AGCGTGATAGGGGTTCGTAATAATA 59.522 40.000 0.00 0.00 0.00 0.98
2696 3680 1.407437 CCTCATCCCTACACTGGCAAC 60.407 57.143 0.00 0.00 0.00 4.17
2739 3725 1.065928 GCGTTCGGATCAGGACGAT 59.934 57.895 27.83 0.00 39.06 3.73
2834 3822 2.213499 CTGGTGTTCGCTTCTGTTCTT 58.787 47.619 0.00 0.00 0.00 2.52
2875 3873 2.941453 TCTTTCCATCGTCGAGGAAG 57.059 50.000 12.40 7.67 44.15 3.46
2959 4582 5.811399 CAAAGAATTGCCATGATGCATTT 57.189 34.783 0.00 0.00 41.70 2.32
2960 4583 6.189677 CAAAGAATTGCCATGATGCATTTT 57.810 33.333 0.00 0.00 41.70 1.82
2961 4584 6.616947 CAAAGAATTGCCATGATGCATTTTT 58.383 32.000 0.00 0.00 41.70 1.94
2962 4585 7.753659 CAAAGAATTGCCATGATGCATTTTTA 58.246 30.769 0.00 0.00 41.70 1.52
2963 4586 8.402472 CAAAGAATTGCCATGATGCATTTTTAT 58.598 29.630 0.00 0.00 41.70 1.40
2964 4587 8.514330 AAGAATTGCCATGATGCATTTTTATT 57.486 26.923 0.00 0.00 41.70 1.40
2965 4588 8.514330 AGAATTGCCATGATGCATTTTTATTT 57.486 26.923 0.00 0.00 41.70 1.40
2966 4589 9.616156 AGAATTGCCATGATGCATTTTTATTTA 57.384 25.926 0.00 0.00 41.70 1.40
2999 4622 4.023450 ACAAGATAGCCATGATGCATTTCG 60.023 41.667 0.00 0.00 0.00 3.46
3025 4649 4.833478 TCTGCTTCTTTTCCAGAGCTAT 57.167 40.909 0.00 0.00 32.30 2.97
3091 4720 4.971125 GCCTGGGCGCCGATCTAC 62.971 72.222 22.54 5.65 0.00 2.59
3092 4721 4.301027 CCTGGGCGCCGATCTACC 62.301 72.222 22.54 4.79 0.00 3.18
3093 4722 4.301027 CTGGGCGCCGATCTACCC 62.301 72.222 22.54 3.93 43.14 3.69
3095 4724 3.857038 GGGCGCCGATCTACCCAA 61.857 66.667 22.54 0.00 42.33 4.12
3096 4725 2.280186 GGCGCCGATCTACCCAAG 60.280 66.667 12.58 0.00 0.00 3.61
3097 4726 2.499685 GCGCCGATCTACCCAAGT 59.500 61.111 0.00 0.00 0.00 3.16
3098 4727 1.883084 GCGCCGATCTACCCAAGTG 60.883 63.158 0.00 0.00 0.00 3.16
3161 4801 1.898472 CTCAAGAAGAGGAGACCTGCA 59.102 52.381 0.00 0.00 40.84 4.41
3162 4802 2.301296 CTCAAGAAGAGGAGACCTGCAA 59.699 50.000 0.00 0.00 40.84 4.08
3163 4803 2.909006 TCAAGAAGAGGAGACCTGCAAT 59.091 45.455 0.00 0.00 31.76 3.56
3182 4822 7.034685 TGCAATAATCTTGTCTGATTCATGG 57.965 36.000 0.00 0.00 37.73 3.66
3188 4828 7.429374 AATCTTGTCTGATTCATGGACTCTA 57.571 36.000 7.36 0.00 31.72 2.43
3245 4895 0.245266 CGTGTTTATTTGGGTGGGGC 59.755 55.000 0.00 0.00 0.00 5.80
3300 4952 1.146263 CCTGCCTTGGTCGTATCCC 59.854 63.158 0.00 0.00 0.00 3.85
3307 4959 2.291741 CCTTGGTCGTATCCCGTAGTAC 59.708 54.545 0.00 0.00 37.94 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.401766 GCCAATGACACCGAGCTGG 61.402 63.158 0.00 0.00 46.41 4.85
131 132 3.645268 ATGGTCCCTTTGGCGAGCC 62.645 63.158 7.26 7.26 0.00 4.70
132 133 2.044946 ATGGTCCCTTTGGCGAGC 60.045 61.111 0.00 0.00 0.00 5.03
136 137 3.905249 GACGATGGTCCCTTTGGC 58.095 61.111 0.00 0.00 37.19 4.52
148 149 3.558314 TCCATGGATCAGGGACGAT 57.442 52.632 11.44 0.00 39.50 3.73
153 154 2.092538 GGCTGATATCCATGGATCAGGG 60.093 54.545 32.33 22.12 46.13 4.45
157 158 1.661341 GCGGCTGATATCCATGGATC 58.339 55.000 30.61 18.80 36.17 3.36
176 177 3.989698 CTGCTCGGTGCTGGTACGG 62.990 68.421 3.53 0.00 43.37 4.02
177 178 2.507102 CTGCTCGGTGCTGGTACG 60.507 66.667 3.53 0.00 43.37 3.67
186 187 2.262915 CTTCTTCGGCTGCTCGGT 59.737 61.111 0.00 0.00 0.00 4.69
187 188 2.510238 CCTTCTTCGGCTGCTCGG 60.510 66.667 0.00 0.00 0.00 4.63
195 196 2.325393 ATAAGCGGGCCCTTCTTCGG 62.325 60.000 24.17 7.74 0.00 4.30
198 199 1.416772 GAGTATAAGCGGGCCCTTCTT 59.583 52.381 22.43 23.40 0.00 2.52
232 234 7.094205 GCAATTGGCTATACTATTAACCATGCT 60.094 37.037 7.72 0.00 40.25 3.79
233 235 7.029563 GCAATTGGCTATACTATTAACCATGC 58.970 38.462 7.72 0.00 40.25 4.06
256 258 2.026356 TGGAAGTTGCTTATAGCCAGCA 60.026 45.455 0.00 0.00 45.73 4.41
257 259 2.643551 TGGAAGTTGCTTATAGCCAGC 58.356 47.619 0.00 0.00 41.51 4.85
258 260 4.202441 ACATGGAAGTTGCTTATAGCCAG 58.798 43.478 0.00 0.00 41.51 4.85
259 261 4.199310 GACATGGAAGTTGCTTATAGCCA 58.801 43.478 0.00 0.00 41.51 4.75
260 262 4.199310 TGACATGGAAGTTGCTTATAGCC 58.801 43.478 0.00 0.00 41.51 3.93
261 263 6.382869 AATGACATGGAAGTTGCTTATAGC 57.617 37.500 0.00 0.00 42.82 2.97
262 264 6.694411 GCAAATGACATGGAAGTTGCTTATAG 59.306 38.462 20.84 0.00 38.60 1.31
263 265 6.152492 TGCAAATGACATGGAAGTTGCTTATA 59.848 34.615 25.28 10.72 41.43 0.98
264 266 5.047164 TGCAAATGACATGGAAGTTGCTTAT 60.047 36.000 25.28 0.00 41.43 1.73
265 267 4.280425 TGCAAATGACATGGAAGTTGCTTA 59.720 37.500 25.28 11.51 41.43 3.09
266 268 3.069872 TGCAAATGACATGGAAGTTGCTT 59.930 39.130 25.28 0.00 41.43 3.91
267 269 2.629137 TGCAAATGACATGGAAGTTGCT 59.371 40.909 25.28 0.00 41.43 3.91
268 270 2.991190 CTGCAAATGACATGGAAGTTGC 59.009 45.455 21.14 21.14 41.28 4.17
269 271 2.991190 GCTGCAAATGACATGGAAGTTG 59.009 45.455 0.00 1.62 0.00 3.16
270 272 2.028748 GGCTGCAAATGACATGGAAGTT 60.029 45.455 0.50 0.00 0.00 2.66
271 273 1.547372 GGCTGCAAATGACATGGAAGT 59.453 47.619 0.50 0.00 0.00 3.01
272 274 1.546923 TGGCTGCAAATGACATGGAAG 59.453 47.619 0.50 0.00 0.00 3.46
273 275 1.630223 TGGCTGCAAATGACATGGAA 58.370 45.000 0.50 0.00 0.00 3.53
274 276 1.855295 ATGGCTGCAAATGACATGGA 58.145 45.000 0.50 0.00 0.00 3.41
275 277 2.276201 CAATGGCTGCAAATGACATGG 58.724 47.619 0.50 0.00 0.00 3.66
293 295 9.325198 CCTTATTGTATTAGTGACTACATGCAA 57.675 33.333 14.85 14.85 0.00 4.08
294 296 8.482943 ACCTTATTGTATTAGTGACTACATGCA 58.517 33.333 0.00 0.00 0.00 3.96
295 297 8.888579 ACCTTATTGTATTAGTGACTACATGC 57.111 34.615 0.00 0.00 0.00 4.06
297 299 9.832445 CCAACCTTATTGTATTAGTGACTACAT 57.168 33.333 0.00 0.00 0.00 2.29
298 300 7.767198 GCCAACCTTATTGTATTAGTGACTACA 59.233 37.037 0.00 0.00 0.00 2.74
299 301 7.985752 AGCCAACCTTATTGTATTAGTGACTAC 59.014 37.037 0.00 0.00 0.00 2.73
300 302 8.086143 AGCCAACCTTATTGTATTAGTGACTA 57.914 34.615 0.00 0.00 0.00 2.59
301 303 6.958767 AGCCAACCTTATTGTATTAGTGACT 58.041 36.000 0.00 0.00 0.00 3.41
302 304 8.904099 ATAGCCAACCTTATTGTATTAGTGAC 57.096 34.615 0.00 0.00 0.00 3.67
310 312 9.430399 ACTAGTCTAATAGCCAACCTTATTGTA 57.570 33.333 0.00 0.00 0.00 2.41
311 313 8.320338 ACTAGTCTAATAGCCAACCTTATTGT 57.680 34.615 0.00 0.00 0.00 2.71
312 314 9.694137 GTACTAGTCTAATAGCCAACCTTATTG 57.306 37.037 0.00 0.00 0.00 1.90
313 315 9.657728 AGTACTAGTCTAATAGCCAACCTTATT 57.342 33.333 0.00 0.00 0.00 1.40
314 316 9.657728 AAGTACTAGTCTAATAGCCAACCTTAT 57.342 33.333 0.00 0.00 0.00 1.73
315 317 9.484806 AAAGTACTAGTCTAATAGCCAACCTTA 57.515 33.333 0.00 0.00 0.00 2.69
316 318 7.974730 AAGTACTAGTCTAATAGCCAACCTT 57.025 36.000 0.00 0.00 0.00 3.50
317 319 7.974730 AAAGTACTAGTCTAATAGCCAACCT 57.025 36.000 0.00 0.00 0.00 3.50
318 320 8.476447 AGAAAAGTACTAGTCTAATAGCCAACC 58.524 37.037 0.00 0.00 0.00 3.77
319 321 9.872721 AAGAAAAGTACTAGTCTAATAGCCAAC 57.127 33.333 0.00 0.00 0.00 3.77
321 323 9.251440 TGAAGAAAAGTACTAGTCTAATAGCCA 57.749 33.333 0.00 0.00 0.00 4.75
322 324 9.518906 GTGAAGAAAAGTACTAGTCTAATAGCC 57.481 37.037 0.00 0.00 0.00 3.93
323 325 9.518906 GGTGAAGAAAAGTACTAGTCTAATAGC 57.481 37.037 0.00 5.13 0.00 2.97
327 329 9.364653 AGAAGGTGAAGAAAAGTACTAGTCTAA 57.635 33.333 0.00 0.00 0.00 2.10
328 330 8.937207 AGAAGGTGAAGAAAAGTACTAGTCTA 57.063 34.615 0.00 0.00 0.00 2.59
329 331 7.726738 AGAGAAGGTGAAGAAAAGTACTAGTCT 59.273 37.037 0.00 0.00 0.00 3.24
330 332 7.888424 AGAGAAGGTGAAGAAAAGTACTAGTC 58.112 38.462 0.00 0.00 0.00 2.59
331 333 7.726738 AGAGAGAAGGTGAAGAAAAGTACTAGT 59.273 37.037 0.00 0.00 0.00 2.57
332 334 8.117813 AGAGAGAAGGTGAAGAAAAGTACTAG 57.882 38.462 0.00 0.00 0.00 2.57
333 335 8.480133 AAGAGAGAAGGTGAAGAAAAGTACTA 57.520 34.615 0.00 0.00 0.00 1.82
334 336 6.987403 AGAGAGAAGGTGAAGAAAAGTACT 57.013 37.500 0.00 0.00 0.00 2.73
335 337 7.929245 AGAAAGAGAGAAGGTGAAGAAAAGTAC 59.071 37.037 0.00 0.00 0.00 2.73
336 338 8.024145 AGAAAGAGAGAAGGTGAAGAAAAGTA 57.976 34.615 0.00 0.00 0.00 2.24
337 339 6.894682 AGAAAGAGAGAAGGTGAAGAAAAGT 58.105 36.000 0.00 0.00 0.00 2.66
338 340 7.216494 AGAGAAAGAGAGAAGGTGAAGAAAAG 58.784 38.462 0.00 0.00 0.00 2.27
339 341 7.130681 AGAGAAAGAGAGAAGGTGAAGAAAA 57.869 36.000 0.00 0.00 0.00 2.29
340 342 6.739331 AGAGAAAGAGAGAAGGTGAAGAAA 57.261 37.500 0.00 0.00 0.00 2.52
341 343 6.739331 AAGAGAAAGAGAGAAGGTGAAGAA 57.261 37.500 0.00 0.00 0.00 2.52
342 344 6.325028 TGAAAGAGAAAGAGAGAAGGTGAAGA 59.675 38.462 0.00 0.00 0.00 2.87
343 345 6.520272 TGAAAGAGAAAGAGAGAAGGTGAAG 58.480 40.000 0.00 0.00 0.00 3.02
344 346 6.485830 TGAAAGAGAAAGAGAGAAGGTGAA 57.514 37.500 0.00 0.00 0.00 3.18
345 347 6.678568 ATGAAAGAGAAAGAGAGAAGGTGA 57.321 37.500 0.00 0.00 0.00 4.02
346 348 6.709846 ACAATGAAAGAGAAAGAGAGAAGGTG 59.290 38.462 0.00 0.00 0.00 4.00
347 349 6.836242 ACAATGAAAGAGAAAGAGAGAAGGT 58.164 36.000 0.00 0.00 0.00 3.50
348 350 9.447157 AATACAATGAAAGAGAAAGAGAGAAGG 57.553 33.333 0.00 0.00 0.00 3.46
364 366 9.781834 CTCCGCAAAAGTAATAAATACAATGAA 57.218 29.630 0.00 0.00 36.94 2.57
365 367 7.913297 GCTCCGCAAAAGTAATAAATACAATGA 59.087 33.333 0.00 0.00 36.94 2.57
366 368 7.700234 TGCTCCGCAAAAGTAATAAATACAATG 59.300 33.333 0.00 0.00 34.43 2.82
367 369 7.700656 GTGCTCCGCAAAAGTAATAAATACAAT 59.299 33.333 0.00 0.00 41.47 2.71
368 370 7.024768 GTGCTCCGCAAAAGTAATAAATACAA 58.975 34.615 0.00 0.00 41.47 2.41
369 371 6.548171 GTGCTCCGCAAAAGTAATAAATACA 58.452 36.000 0.00 0.00 41.47 2.29
370 372 5.675444 CGTGCTCCGCAAAAGTAATAAATAC 59.325 40.000 0.00 0.00 41.47 1.89
371 373 5.802064 CGTGCTCCGCAAAAGTAATAAATA 58.198 37.500 0.00 0.00 41.47 1.40
372 374 4.658071 CGTGCTCCGCAAAAGTAATAAAT 58.342 39.130 0.00 0.00 41.47 1.40
373 375 4.073169 CGTGCTCCGCAAAAGTAATAAA 57.927 40.909 0.00 0.00 41.47 1.40
374 376 3.733024 CGTGCTCCGCAAAAGTAATAA 57.267 42.857 0.00 0.00 41.47 1.40
386 388 1.135373 CCTACCTATATGCGTGCTCCG 60.135 57.143 0.00 0.00 40.40 4.63
387 389 1.404315 GCCTACCTATATGCGTGCTCC 60.404 57.143 0.00 0.00 0.00 4.70
388 390 1.546476 AGCCTACCTATATGCGTGCTC 59.454 52.381 0.00 0.00 0.00 4.26
389 391 1.546476 GAGCCTACCTATATGCGTGCT 59.454 52.381 0.00 0.00 0.00 4.40
390 392 1.546476 AGAGCCTACCTATATGCGTGC 59.454 52.381 0.00 0.00 0.00 5.34
391 393 3.255888 TGAAGAGCCTACCTATATGCGTG 59.744 47.826 0.00 0.00 0.00 5.34
392 394 3.497332 TGAAGAGCCTACCTATATGCGT 58.503 45.455 0.00 0.00 0.00 5.24
393 395 4.727507 ATGAAGAGCCTACCTATATGCG 57.272 45.455 0.00 0.00 0.00 4.73
394 396 7.065204 GCTTTTATGAAGAGCCTACCTATATGC 59.935 40.741 0.00 0.00 0.00 3.14
395 397 8.317679 AGCTTTTATGAAGAGCCTACCTATATG 58.682 37.037 0.00 0.00 37.11 1.78
396 398 8.442660 AGCTTTTATGAAGAGCCTACCTATAT 57.557 34.615 0.00 0.00 37.11 0.86
397 399 7.857404 AGCTTTTATGAAGAGCCTACCTATA 57.143 36.000 0.00 0.00 37.11 1.31
398 400 6.755542 AGCTTTTATGAAGAGCCTACCTAT 57.244 37.500 0.00 0.00 37.11 2.57
399 401 6.561519 AAGCTTTTATGAAGAGCCTACCTA 57.438 37.500 0.00 0.00 37.11 3.08
400 402 5.443230 AAGCTTTTATGAAGAGCCTACCT 57.557 39.130 0.00 0.00 37.11 3.08
401 403 7.809546 AATAAGCTTTTATGAAGAGCCTACC 57.190 36.000 3.20 0.00 37.11 3.18
402 404 8.346300 GGAAATAAGCTTTTATGAAGAGCCTAC 58.654 37.037 3.20 0.00 37.11 3.18
403 405 8.052748 TGGAAATAAGCTTTTATGAAGAGCCTA 58.947 33.333 3.20 0.00 37.11 3.93
404 406 6.891908 TGGAAATAAGCTTTTATGAAGAGCCT 59.108 34.615 3.20 0.00 37.11 4.58
405 407 6.975197 GTGGAAATAAGCTTTTATGAAGAGCC 59.025 38.462 3.20 0.00 37.11 4.70
406 408 6.975197 GGTGGAAATAAGCTTTTATGAAGAGC 59.025 38.462 3.20 0.00 36.68 4.09
407 409 7.340487 AGGGTGGAAATAAGCTTTTATGAAGAG 59.660 37.037 3.20 0.00 0.00 2.85
408 410 7.182060 AGGGTGGAAATAAGCTTTTATGAAGA 58.818 34.615 3.20 0.00 0.00 2.87
409 411 7.410120 AGGGTGGAAATAAGCTTTTATGAAG 57.590 36.000 3.20 0.00 0.00 3.02
410 412 7.790782 AAGGGTGGAAATAAGCTTTTATGAA 57.209 32.000 3.20 0.00 0.00 2.57
411 413 7.790782 AAAGGGTGGAAATAAGCTTTTATGA 57.209 32.000 3.20 0.00 0.00 2.15
412 414 8.846943 AAAAAGGGTGGAAATAAGCTTTTATG 57.153 30.769 3.20 0.00 0.00 1.90
413 415 8.655901 TGAAAAAGGGTGGAAATAAGCTTTTAT 58.344 29.630 3.20 0.00 0.00 1.40
414 416 8.024145 TGAAAAAGGGTGGAAATAAGCTTTTA 57.976 30.769 3.20 0.00 0.00 1.52
415 417 6.894682 TGAAAAAGGGTGGAAATAAGCTTTT 58.105 32.000 3.20 0.00 0.00 2.27
416 418 6.493189 TGAAAAAGGGTGGAAATAAGCTTT 57.507 33.333 3.20 0.00 0.00 3.51
417 419 6.288294 GTTGAAAAAGGGTGGAAATAAGCTT 58.712 36.000 3.48 3.48 0.00 3.74
418 420 5.508994 CGTTGAAAAAGGGTGGAAATAAGCT 60.509 40.000 0.00 0.00 0.00 3.74
419 421 4.684242 CGTTGAAAAAGGGTGGAAATAAGC 59.316 41.667 0.00 0.00 0.00 3.09
420 422 5.838529 ACGTTGAAAAAGGGTGGAAATAAG 58.161 37.500 0.00 0.00 0.00 1.73
421 423 5.855740 ACGTTGAAAAAGGGTGGAAATAA 57.144 34.783 0.00 0.00 0.00 1.40
422 424 6.943718 AGATACGTTGAAAAAGGGTGGAAATA 59.056 34.615 0.00 0.00 0.00 1.40
423 425 5.773176 AGATACGTTGAAAAAGGGTGGAAAT 59.227 36.000 0.00 0.00 0.00 2.17
424 426 5.134661 AGATACGTTGAAAAAGGGTGGAAA 58.865 37.500 0.00 0.00 0.00 3.13
425 427 4.721132 AGATACGTTGAAAAAGGGTGGAA 58.279 39.130 0.00 0.00 0.00 3.53
426 428 4.041198 AGAGATACGTTGAAAAAGGGTGGA 59.959 41.667 0.00 0.00 0.00 4.02
427 429 4.324267 AGAGATACGTTGAAAAAGGGTGG 58.676 43.478 0.00 0.00 0.00 4.61
428 430 4.392138 GGAGAGATACGTTGAAAAAGGGTG 59.608 45.833 0.00 0.00 0.00 4.61
429 431 4.286291 AGGAGAGATACGTTGAAAAAGGGT 59.714 41.667 0.00 0.00 0.00 4.34
430 432 4.833390 AGGAGAGATACGTTGAAAAAGGG 58.167 43.478 0.00 0.00 0.00 3.95
431 433 5.932303 TGAAGGAGAGATACGTTGAAAAAGG 59.068 40.000 0.00 0.00 0.00 3.11
432 434 6.423905 TGTGAAGGAGAGATACGTTGAAAAAG 59.576 38.462 0.00 0.00 0.00 2.27
433 435 6.285224 TGTGAAGGAGAGATACGTTGAAAAA 58.715 36.000 0.00 0.00 0.00 1.94
434 436 5.849510 TGTGAAGGAGAGATACGTTGAAAA 58.150 37.500 0.00 0.00 0.00 2.29
435 437 5.462530 TGTGAAGGAGAGATACGTTGAAA 57.537 39.130 0.00 0.00 0.00 2.69
436 438 5.661056 ATGTGAAGGAGAGATACGTTGAA 57.339 39.130 0.00 0.00 0.00 2.69
437 439 6.038382 GTCTATGTGAAGGAGAGATACGTTGA 59.962 42.308 0.00 0.00 0.00 3.18
438 440 6.183360 TGTCTATGTGAAGGAGAGATACGTTG 60.183 42.308 0.00 0.00 0.00 4.10
439 441 5.886474 TGTCTATGTGAAGGAGAGATACGTT 59.114 40.000 0.00 0.00 0.00 3.99
440 442 5.437946 TGTCTATGTGAAGGAGAGATACGT 58.562 41.667 0.00 0.00 0.00 3.57
441 443 6.378710 TTGTCTATGTGAAGGAGAGATACG 57.621 41.667 0.00 0.00 0.00 3.06
464 466 1.253100 CCCGCCTACATGGTGTTTTT 58.747 50.000 0.00 0.00 44.58 1.94
465 467 1.248101 GCCCGCCTACATGGTGTTTT 61.248 55.000 0.00 0.00 44.58 2.43
466 468 1.677633 GCCCGCCTACATGGTGTTT 60.678 57.895 0.00 0.00 44.58 2.83
467 469 1.268992 TAGCCCGCCTACATGGTGTT 61.269 55.000 0.00 0.00 44.58 3.32
468 470 1.054406 ATAGCCCGCCTACATGGTGT 61.054 55.000 0.00 0.00 44.58 4.16
469 471 0.973632 TATAGCCCGCCTACATGGTG 59.026 55.000 0.00 0.00 45.60 4.17
470 472 1.623811 CTTATAGCCCGCCTACATGGT 59.376 52.381 0.00 0.00 38.35 3.55
471 473 1.676014 GCTTATAGCCCGCCTACATGG 60.676 57.143 0.00 0.00 34.48 3.66
472 474 1.726853 GCTTATAGCCCGCCTACATG 58.273 55.000 0.00 0.00 34.48 3.21
483 485 4.201920 GCAAGTACAAAGTGGGCTTATAGC 60.202 45.833 0.00 0.00 41.46 2.97
484 486 5.186198 AGCAAGTACAAAGTGGGCTTATAG 58.814 41.667 0.00 0.00 33.95 1.31
485 487 5.045869 AGAGCAAGTACAAAGTGGGCTTATA 60.046 40.000 0.00 0.00 33.95 0.98
486 488 4.010349 GAGCAAGTACAAAGTGGGCTTAT 58.990 43.478 0.00 0.00 33.95 1.73
487 489 3.072476 AGAGCAAGTACAAAGTGGGCTTA 59.928 43.478 0.00 0.00 33.95 3.09
488 490 2.158608 AGAGCAAGTACAAAGTGGGCTT 60.159 45.455 0.00 0.00 36.30 4.35
489 491 1.421646 AGAGCAAGTACAAAGTGGGCT 59.578 47.619 0.00 0.00 0.00 5.19
490 492 1.897560 AGAGCAAGTACAAAGTGGGC 58.102 50.000 0.00 0.00 0.00 5.36
491 493 6.407202 ACTATAAGAGCAAGTACAAAGTGGG 58.593 40.000 0.00 0.00 0.00 4.61
492 494 8.870879 GTTACTATAAGAGCAAGTACAAAGTGG 58.129 37.037 0.00 0.00 0.00 4.00
493 495 9.419297 TGTTACTATAAGAGCAAGTACAAAGTG 57.581 33.333 0.00 0.00 0.00 3.16
497 499 9.726232 CGTATGTTACTATAAGAGCAAGTACAA 57.274 33.333 0.00 0.00 0.00 2.41
498 500 9.112725 TCGTATGTTACTATAAGAGCAAGTACA 57.887 33.333 0.00 0.00 0.00 2.90
499 501 9.596677 CTCGTATGTTACTATAAGAGCAAGTAC 57.403 37.037 0.00 0.00 34.20 2.73
500 502 8.781196 CCTCGTATGTTACTATAAGAGCAAGTA 58.219 37.037 0.00 0.00 37.63 2.24
501 503 7.501559 TCCTCGTATGTTACTATAAGAGCAAGT 59.498 37.037 0.00 0.00 37.63 3.16
502 504 7.872881 TCCTCGTATGTTACTATAAGAGCAAG 58.127 38.462 0.00 0.00 37.63 4.01
503 505 7.812690 TCCTCGTATGTTACTATAAGAGCAA 57.187 36.000 0.00 0.00 37.63 3.91
504 506 7.812690 TTCCTCGTATGTTACTATAAGAGCA 57.187 36.000 0.00 0.00 37.63 4.26
505 507 8.732531 AGATTCCTCGTATGTTACTATAAGAGC 58.267 37.037 0.00 0.00 37.63 4.09
510 512 9.346005 TGTGAAGATTCCTCGTATGTTACTATA 57.654 33.333 0.00 0.00 0.00 1.31
511 513 8.136165 GTGTGAAGATTCCTCGTATGTTACTAT 58.864 37.037 0.00 0.00 0.00 2.12
512 514 7.338703 AGTGTGAAGATTCCTCGTATGTTACTA 59.661 37.037 0.00 0.00 0.00 1.82
513 515 6.153000 AGTGTGAAGATTCCTCGTATGTTACT 59.847 38.462 0.00 0.00 0.00 2.24
547 549 5.690997 ATTCTTGTCGACCTTTTTCTTCC 57.309 39.130 14.12 0.00 0.00 3.46
720 1036 0.534873 TAGCGGCAGTGCAACATCTA 59.465 50.000 18.61 7.13 41.43 1.98
731 1047 4.376413 CGTATAGCAAATTTCTAGCGGCAG 60.376 45.833 1.45 0.00 0.00 4.85
830 1152 5.247084 TGCCAAATTTCTGATGGAAAATGG 58.753 37.500 15.56 15.56 46.42 3.16
975 1348 0.904649 TGGAGATGAATGAGCGTGGT 59.095 50.000 0.00 0.00 0.00 4.16
982 1355 8.518720 TTATATAGGGGTTTGGAGATGAATGA 57.481 34.615 0.00 0.00 0.00 2.57
983 1356 9.014297 GTTTATATAGGGGTTTGGAGATGAATG 57.986 37.037 0.00 0.00 0.00 2.67
984 1357 8.170730 GGTTTATATAGGGGTTTGGAGATGAAT 58.829 37.037 0.00 0.00 0.00 2.57
985 1358 7.422089 GGGTTTATATAGGGGTTTGGAGATGAA 60.422 40.741 0.00 0.00 0.00 2.57
1094 1496 0.110464 GAAAGCACGCTCACTGAAGC 60.110 55.000 0.00 0.00 38.97 3.86
1095 1497 0.162507 CGAAAGCACGCTCACTGAAG 59.837 55.000 0.00 0.00 0.00 3.02
1113 1526 2.866510 CATGCGTTTCGTGCTGCG 60.867 61.111 0.00 0.00 43.01 5.18
1115 1528 2.502510 GCCATGCGTTTCGTGCTG 60.503 61.111 0.00 0.00 0.00 4.41
1147 1570 2.280457 GCAGGATCGCTAGCACCC 60.280 66.667 16.45 11.90 0.00 4.61
1179 1605 2.887889 CGAAGGTCGCCAACGCAAA 61.888 57.895 0.00 0.00 39.84 3.68
1677 2142 0.179129 GGCAATGGCGATGAACCAAG 60.179 55.000 0.00 0.00 41.49 3.61
1709 2177 1.869767 CACAAGGCACAGACTGAGAAC 59.130 52.381 10.08 0.00 0.00 3.01
1710 2178 1.811558 GCACAAGGCACAGACTGAGAA 60.812 52.381 10.08 0.00 43.97 2.87
1711 2179 0.250038 GCACAAGGCACAGACTGAGA 60.250 55.000 10.08 0.00 43.97 3.27
1808 2305 1.425448 CCTTTCCCTCCAGGTTCTTGT 59.575 52.381 0.00 0.00 36.75 3.16
2218 2726 2.925578 TGTATACACGGACGTTCCAG 57.074 50.000 0.08 0.00 35.91 3.86
2223 2731 2.096565 CGATCGATGTATACACGGACGT 60.097 50.000 10.26 0.00 0.00 4.34
2237 2748 1.364171 CCTTTCTCCGGCGATCGAT 59.636 57.895 21.57 0.00 42.43 3.59
2257 2801 0.759346 AATACAGACGCCCCCATCTC 59.241 55.000 0.00 0.00 0.00 2.75
2329 2893 2.100605 AAGAACGAGCACAAGGATCC 57.899 50.000 2.48 2.48 0.00 3.36
2340 2908 1.190323 GTGAGCGTGACAAAGAACGAG 59.810 52.381 0.00 0.00 42.32 4.18
2438 3297 1.137872 AGCCTCAGGATAAGTTCAGCG 59.862 52.381 0.00 0.00 0.00 5.18
2494 3353 0.539438 TGATTGACGGGGCAAAGCTT 60.539 50.000 0.00 0.00 0.00 3.74
2504 3363 0.243907 ACCGAGTGACTGATTGACGG 59.756 55.000 6.61 6.61 43.61 4.79
2524 3422 0.108138 ACAGCAGCGTAGTTCCATCC 60.108 55.000 0.00 0.00 0.00 3.51
2626 3565 1.676967 GGACCCGAGTACCTGACGT 60.677 63.158 0.00 0.00 0.00 4.34
2696 3680 0.817634 TGAACACGCCTTCCACCTTG 60.818 55.000 0.00 0.00 0.00 3.61
2739 3725 2.424601 CCTAACAGGACGTTGATCGGTA 59.575 50.000 0.00 0.00 44.69 4.02
2968 4591 6.591062 GCATCATGGCTATCTTGTTTCAAAAA 59.409 34.615 0.00 0.00 0.00 1.94
2969 4592 6.101332 GCATCATGGCTATCTTGTTTCAAAA 58.899 36.000 0.00 0.00 0.00 2.44
2970 4593 5.185442 TGCATCATGGCTATCTTGTTTCAAA 59.815 36.000 0.00 0.00 34.04 2.69
2971 4594 4.705991 TGCATCATGGCTATCTTGTTTCAA 59.294 37.500 0.00 0.00 34.04 2.69
2972 4595 4.271661 TGCATCATGGCTATCTTGTTTCA 58.728 39.130 0.00 0.00 34.04 2.69
2973 4596 4.906065 TGCATCATGGCTATCTTGTTTC 57.094 40.909 0.00 0.00 34.04 2.78
2974 4597 5.864418 AATGCATCATGGCTATCTTGTTT 57.136 34.783 0.00 0.00 34.04 2.83
2975 4598 5.506815 CGAAATGCATCATGGCTATCTTGTT 60.507 40.000 0.00 0.00 34.04 2.83
2976 4599 4.023450 CGAAATGCATCATGGCTATCTTGT 60.023 41.667 0.00 0.00 34.04 3.16
2977 4600 4.023450 ACGAAATGCATCATGGCTATCTTG 60.023 41.667 0.00 0.00 34.04 3.02
2978 4601 4.139786 ACGAAATGCATCATGGCTATCTT 58.860 39.130 0.00 0.00 34.04 2.40
2979 4602 3.748083 ACGAAATGCATCATGGCTATCT 58.252 40.909 0.00 0.00 34.04 1.98
2980 4603 4.214971 AGAACGAAATGCATCATGGCTATC 59.785 41.667 0.00 0.00 34.04 2.08
2983 4606 2.372264 AGAACGAAATGCATCATGGCT 58.628 42.857 0.00 0.00 34.04 4.75
2999 4622 4.320129 GCTCTGGAAAAGAAGCAGAAGAAC 60.320 45.833 0.00 0.00 33.37 3.01
3091 4720 2.751436 CCGTCATGGGCACTTGGG 60.751 66.667 1.48 0.00 0.00 4.12
3092 4721 1.746615 CTCCGTCATGGGCACTTGG 60.747 63.158 1.48 0.00 38.76 3.61
3093 4722 2.401766 GCTCCGTCATGGGCACTTG 61.402 63.158 0.00 0.00 38.76 3.16
3094 4723 2.045926 GCTCCGTCATGGGCACTT 60.046 61.111 0.00 0.00 38.76 3.16
3095 4724 1.264749 TAAGCTCCGTCATGGGCACT 61.265 55.000 0.00 0.00 38.76 4.40
3096 4725 0.392461 TTAAGCTCCGTCATGGGCAC 60.392 55.000 0.00 0.00 38.76 5.01
3097 4726 0.546122 ATTAAGCTCCGTCATGGGCA 59.454 50.000 0.00 0.00 38.76 5.36
3098 4727 1.334869 CAATTAAGCTCCGTCATGGGC 59.665 52.381 0.00 0.00 38.76 5.36
3161 4801 8.492782 AGAGTCCATGAATCAGACAAGATTATT 58.507 33.333 5.61 0.00 38.30 1.40
3162 4802 8.032045 AGAGTCCATGAATCAGACAAGATTAT 57.968 34.615 5.61 0.00 38.30 1.28
3163 4803 7.429374 AGAGTCCATGAATCAGACAAGATTA 57.571 36.000 5.61 0.00 38.30 1.75
3182 4822 2.713877 ACGTCTCCCTTGTCTAGAGTC 58.286 52.381 0.00 0.00 0.00 3.36
3188 4828 4.101119 CCCAATTATACGTCTCCCTTGTCT 59.899 45.833 0.00 0.00 0.00 3.41
3229 4876 3.494223 GCATATGCCCCACCCAAATAAAC 60.494 47.826 17.26 0.00 34.31 2.01
3230 4877 2.703007 GCATATGCCCCACCCAAATAAA 59.297 45.455 17.26 0.00 34.31 1.40
3300 4952 1.789410 CGTGCGGTCTGAAGTACTACG 60.789 57.143 0.00 0.00 0.00 3.51
3307 4959 1.009389 GGAAGTCGTGCGGTCTGAAG 61.009 60.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.