Multiple sequence alignment - TraesCS7D01G418200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G418200 | chr7D | 100.000 | 6854 | 0 | 0 | 1 | 6854 | 537678550 | 537671697 | 0.000000e+00 | 12658.0 |
1 | TraesCS7D01G418200 | chr7D | 74.157 | 1068 | 250 | 22 | 5047 | 6102 | 591009203 | 591008150 | 2.960000e-113 | 420.0 |
2 | TraesCS7D01G418200 | chr7D | 92.169 | 166 | 13 | 0 | 3885 | 4050 | 397554916 | 397555081 | 1.150000e-57 | 235.0 |
3 | TraesCS7D01G418200 | chr7B | 96.761 | 3118 | 83 | 12 | 774 | 3884 | 580163670 | 580160564 | 0.000000e+00 | 5182.0 |
4 | TraesCS7D01G418200 | chr7B | 98.398 | 1997 | 26 | 3 | 4048 | 6043 | 580160563 | 580158572 | 0.000000e+00 | 3506.0 |
5 | TraesCS7D01G418200 | chr7B | 89.303 | 402 | 16 | 5 | 2443 | 2837 | 489143618 | 489143999 | 4.810000e-131 | 479.0 |
6 | TraesCS7D01G418200 | chr7B | 94.805 | 308 | 12 | 1 | 6040 | 6347 | 580156159 | 580155856 | 1.730000e-130 | 477.0 |
7 | TraesCS7D01G418200 | chr7B | 96.071 | 280 | 6 | 3 | 6341 | 6619 | 580155834 | 580155559 | 1.050000e-122 | 451.0 |
8 | TraesCS7D01G418200 | chr7B | 93.357 | 286 | 15 | 2 | 491 | 776 | 580164170 | 580163889 | 2.960000e-113 | 420.0 |
9 | TraesCS7D01G418200 | chr7B | 73.460 | 1055 | 260 | 17 | 5047 | 6092 | 666511738 | 666510695 | 5.020000e-101 | 379.0 |
10 | TraesCS7D01G418200 | chr7B | 88.000 | 175 | 21 | 0 | 2836 | 3010 | 489144160 | 489144334 | 2.510000e-49 | 207.0 |
11 | TraesCS7D01G418200 | chr7B | 93.525 | 139 | 5 | 2 | 1 | 135 | 580164479 | 580164341 | 3.240000e-48 | 204.0 |
12 | TraesCS7D01G418200 | chr7A | 96.840 | 2911 | 80 | 9 | 2443 | 5347 | 619034931 | 619032027 | 0.000000e+00 | 4855.0 |
13 | TraesCS7D01G418200 | chr7A | 97.493 | 1675 | 38 | 3 | 774 | 2446 | 619036725 | 619035053 | 0.000000e+00 | 2857.0 |
14 | TraesCS7D01G418200 | chr7A | 89.394 | 2112 | 211 | 10 | 4199 | 6307 | 618683077 | 618680976 | 0.000000e+00 | 2647.0 |
15 | TraesCS7D01G418200 | chr7A | 93.613 | 1503 | 54 | 24 | 5383 | 6854 | 619032024 | 619030533 | 0.000000e+00 | 2206.0 |
16 | TraesCS7D01G418200 | chr7A | 86.927 | 436 | 39 | 8 | 6420 | 6845 | 618680885 | 618680458 | 2.240000e-129 | 473.0 |
17 | TraesCS7D01G418200 | chr7A | 93.133 | 233 | 15 | 1 | 491 | 723 | 619037254 | 619037023 | 2.370000e-89 | 340.0 |
18 | TraesCS7D01G418200 | chr7A | 92.771 | 166 | 12 | 0 | 3885 | 4050 | 451519972 | 451519807 | 2.470000e-59 | 241.0 |
19 | TraesCS7D01G418200 | chr7A | 91.667 | 168 | 13 | 1 | 294 | 460 | 619037422 | 619037255 | 1.490000e-56 | 231.0 |
20 | TraesCS7D01G418200 | chr7A | 96.825 | 63 | 1 | 1 | 18 | 79 | 619037517 | 619037455 | 3.380000e-18 | 104.0 |
21 | TraesCS7D01G418200 | chr7A | 100.000 | 42 | 0 | 0 | 623 | 664 | 619037030 | 619036989 | 2.050000e-10 | 78.7 |
22 | TraesCS7D01G418200 | chr1D | 94.662 | 562 | 25 | 1 | 2449 | 3010 | 478349291 | 478348735 | 0.000000e+00 | 867.0 |
23 | TraesCS7D01G418200 | chr1D | 94.330 | 388 | 18 | 3 | 2432 | 2819 | 129681098 | 129681481 | 5.920000e-165 | 592.0 |
24 | TraesCS7D01G418200 | chr1D | 90.449 | 356 | 24 | 5 | 2435 | 2784 | 416746948 | 416746597 | 1.740000e-125 | 460.0 |
25 | TraesCS7D01G418200 | chr1D | 73.411 | 944 | 228 | 20 | 5158 | 6089 | 439928689 | 439927757 | 1.420000e-86 | 331.0 |
26 | TraesCS7D01G418200 | chr1D | 94.675 | 169 | 6 | 2 | 133 | 298 | 360358224 | 360358392 | 6.820000e-65 | 259.0 |
27 | TraesCS7D01G418200 | chr1D | 97.778 | 90 | 2 | 0 | 2865 | 2954 | 129681478 | 129681567 | 9.200000e-34 | 156.0 |
28 | TraesCS7D01G418200 | chr1D | 95.349 | 86 | 4 | 0 | 2878 | 2963 | 416731485 | 416731400 | 3.330000e-28 | 137.0 |
29 | TraesCS7D01G418200 | chr1D | 98.649 | 74 | 1 | 0 | 2864 | 2937 | 416731619 | 416731546 | 1.550000e-26 | 132.0 |
30 | TraesCS7D01G418200 | chr5D | 93.380 | 574 | 29 | 2 | 2436 | 3009 | 520967530 | 520968094 | 0.000000e+00 | 841.0 |
31 | TraesCS7D01G418200 | chr5D | 74.277 | 968 | 232 | 15 | 5122 | 6080 | 500132720 | 500131761 | 6.440000e-105 | 392.0 |
32 | TraesCS7D01G418200 | chr4D | 91.111 | 360 | 17 | 5 | 2604 | 2963 | 347513452 | 347513108 | 2.240000e-129 | 473.0 |
33 | TraesCS7D01G418200 | chr4D | 93.642 | 173 | 8 | 1 | 132 | 301 | 75782052 | 75782224 | 8.820000e-64 | 255.0 |
34 | TraesCS7D01G418200 | chr4D | 91.848 | 184 | 8 | 5 | 132 | 310 | 6588593 | 6588412 | 4.100000e-62 | 250.0 |
35 | TraesCS7D01G418200 | chr4D | 88.525 | 183 | 20 | 1 | 3864 | 4046 | 334164371 | 334164552 | 3.220000e-53 | 220.0 |
36 | TraesCS7D01G418200 | chr4D | 77.333 | 150 | 32 | 2 | 5300 | 5448 | 2999756 | 2999904 | 3.410000e-13 | 87.9 |
37 | TraesCS7D01G418200 | chr5B | 74.327 | 966 | 235 | 11 | 5122 | 6080 | 621468906 | 621467947 | 1.390000e-106 | 398.0 |
38 | TraesCS7D01G418200 | chr5B | 93.678 | 174 | 8 | 1 | 127 | 297 | 427931196 | 427931369 | 2.450000e-64 | 257.0 |
39 | TraesCS7D01G418200 | chr2D | 94.220 | 173 | 7 | 1 | 133 | 302 | 560959485 | 560959657 | 1.900000e-65 | 261.0 |
40 | TraesCS7D01G418200 | chr3A | 94.152 | 171 | 7 | 1 | 131 | 298 | 611185139 | 611185309 | 2.450000e-64 | 257.0 |
41 | TraesCS7D01G418200 | chr3A | 92.121 | 165 | 13 | 0 | 3882 | 4046 | 600921019 | 600920855 | 4.130000e-57 | 233.0 |
42 | TraesCS7D01G418200 | chr3A | 90.588 | 170 | 16 | 0 | 3885 | 4054 | 238686371 | 238686202 | 6.920000e-55 | 226.0 |
43 | TraesCS7D01G418200 | chr4B | 93.182 | 176 | 9 | 1 | 126 | 298 | 86060293 | 86060468 | 8.820000e-64 | 255.0 |
44 | TraesCS7D01G418200 | chr1A | 93.605 | 172 | 9 | 1 | 133 | 302 | 34971277 | 34971448 | 8.820000e-64 | 255.0 |
45 | TraesCS7D01G418200 | chr3B | 90.256 | 195 | 11 | 6 | 108 | 298 | 225180149 | 225179959 | 1.480000e-61 | 248.0 |
46 | TraesCS7D01G418200 | chr2A | 93.865 | 163 | 9 | 1 | 3885 | 4046 | 703708263 | 703708425 | 1.910000e-60 | 244.0 |
47 | TraesCS7D01G418200 | chr2A | 77.778 | 207 | 44 | 2 | 2432 | 2637 | 770388538 | 770388743 | 7.220000e-25 | 126.0 |
48 | TraesCS7D01G418200 | chr5A | 90.857 | 175 | 14 | 2 | 3879 | 4051 | 320214236 | 320214410 | 4.130000e-57 | 233.0 |
49 | TraesCS7D01G418200 | chr3D | 90.643 | 171 | 16 | 0 | 3885 | 4055 | 187836308 | 187836478 | 1.920000e-55 | 228.0 |
50 | TraesCS7D01G418200 | chr3D | 76.733 | 202 | 45 | 2 | 2434 | 2634 | 466382448 | 466382648 | 2.020000e-20 | 111.0 |
51 | TraesCS7D01G418200 | chr2B | 94.737 | 38 | 1 | 1 | 2429 | 2466 | 425793026 | 425792990 | 2.670000e-04 | 58.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G418200 | chr7D | 537671697 | 537678550 | 6853 | True | 12658.000000 | 12658 | 100.000000 | 1 | 6854 | 1 | chr7D.!!$R1 | 6853 |
1 | TraesCS7D01G418200 | chr7D | 591008150 | 591009203 | 1053 | True | 420.000000 | 420 | 74.157000 | 5047 | 6102 | 1 | chr7D.!!$R2 | 1055 |
2 | TraesCS7D01G418200 | chr7B | 580155559 | 580164479 | 8920 | True | 1706.666667 | 5182 | 95.486167 | 1 | 6619 | 6 | chr7B.!!$R2 | 6618 |
3 | TraesCS7D01G418200 | chr7B | 666510695 | 666511738 | 1043 | True | 379.000000 | 379 | 73.460000 | 5047 | 6092 | 1 | chr7B.!!$R1 | 1045 |
4 | TraesCS7D01G418200 | chr7B | 489143618 | 489144334 | 716 | False | 343.000000 | 479 | 88.651500 | 2443 | 3010 | 2 | chr7B.!!$F1 | 567 |
5 | TraesCS7D01G418200 | chr7A | 618680458 | 618683077 | 2619 | True | 1560.000000 | 2647 | 88.160500 | 4199 | 6845 | 2 | chr7A.!!$R2 | 2646 |
6 | TraesCS7D01G418200 | chr7A | 619030533 | 619037517 | 6984 | True | 1524.528571 | 4855 | 95.653000 | 18 | 6854 | 7 | chr7A.!!$R3 | 6836 |
7 | TraesCS7D01G418200 | chr1D | 478348735 | 478349291 | 556 | True | 867.000000 | 867 | 94.662000 | 2449 | 3010 | 1 | chr1D.!!$R3 | 561 |
8 | TraesCS7D01G418200 | chr1D | 439927757 | 439928689 | 932 | True | 331.000000 | 331 | 73.411000 | 5158 | 6089 | 1 | chr1D.!!$R2 | 931 |
9 | TraesCS7D01G418200 | chr5D | 520967530 | 520968094 | 564 | False | 841.000000 | 841 | 93.380000 | 2436 | 3009 | 1 | chr5D.!!$F1 | 573 |
10 | TraesCS7D01G418200 | chr5D | 500131761 | 500132720 | 959 | True | 392.000000 | 392 | 74.277000 | 5122 | 6080 | 1 | chr5D.!!$R1 | 958 |
11 | TraesCS7D01G418200 | chr5B | 621467947 | 621468906 | 959 | True | 398.000000 | 398 | 74.327000 | 5122 | 6080 | 1 | chr5B.!!$R1 | 958 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
386 | 397 | 0.179034 | TGCCCACACCAAAAATTGCC | 60.179 | 50.000 | 0.00 | 0.0 | 0.00 | 4.52 | F |
1044 | 1302 | 0.984961 | TGCTAGGGATGGCTGAAGCT | 60.985 | 55.000 | 1.74 | 0.0 | 41.70 | 3.74 | F |
2597 | 2984 | 0.729690 | GTTTCCTGGATTCGCTCTGC | 59.270 | 55.000 | 0.00 | 0.0 | 0.00 | 4.26 | F |
2649 | 3043 | 1.069765 | CTGGAACACTCACGGCACT | 59.930 | 57.895 | 0.00 | 0.0 | 0.00 | 4.40 | F |
3131 | 3693 | 1.456544 | GTTGCCACACATTCATTTGCG | 59.543 | 47.619 | 0.00 | 0.0 | 0.00 | 4.85 | F |
4834 | 5401 | 0.531974 | GAGTGCAAACGGACACCAGA | 60.532 | 55.000 | 0.00 | 0.0 | 37.51 | 3.86 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1328 | 1586 | 2.555325 | CACAAGTTCACTGACATGCCAT | 59.445 | 45.455 | 0.0 | 0.0 | 0.00 | 4.40 | R |
2649 | 3043 | 1.141858 | TGTGGTGTGTGGTAGCATTCA | 59.858 | 47.619 | 0.0 | 0.0 | 0.00 | 2.57 | R |
4430 | 4997 | 5.043903 | ACACTCGACTCATATTTGATTCCG | 58.956 | 41.667 | 0.0 | 0.0 | 29.96 | 4.30 | R |
4649 | 5216 | 3.945285 | CACACCTGTATCCAACATAACCC | 59.055 | 47.826 | 0.0 | 0.0 | 37.50 | 4.11 | R |
4984 | 5551 | 0.984230 | TCTTTTGAGGGGACGAGCAT | 59.016 | 50.000 | 0.0 | 0.0 | 0.00 | 3.79 | R |
6785 | 9810 | 0.617413 | ACACCTCAGGGATGCTTCTG | 59.383 | 55.000 | 0.0 | 0.0 | 36.25 | 3.02 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
76 | 78 | 8.674263 | ACTGTGAAAATTGGAAAATGCATTAA | 57.326 | 26.923 | 13.39 | 3.40 | 0.00 | 1.40 |
124 | 129 | 5.749588 | TGTGAACAATGAAGCATTTTCTGTG | 59.250 | 36.000 | 0.00 | 0.00 | 31.05 | 3.66 |
132 | 137 | 9.577110 | CAATGAAGCATTTTCTGTGTAATGTAT | 57.423 | 29.630 | 0.00 | 0.00 | 34.88 | 2.29 |
135 | 140 | 9.448438 | TGAAGCATTTTCTGTGTAATGTATACT | 57.552 | 29.630 | 4.17 | 0.00 | 34.88 | 2.12 |
138 | 143 | 8.893727 | AGCATTTTCTGTGTAATGTATACTTCC | 58.106 | 33.333 | 4.17 | 0.00 | 34.88 | 3.46 |
139 | 144 | 8.893727 | GCATTTTCTGTGTAATGTATACTTCCT | 58.106 | 33.333 | 4.17 | 0.00 | 34.88 | 3.36 |
141 | 146 | 9.614792 | ATTTTCTGTGTAATGTATACTTCCTCC | 57.385 | 33.333 | 4.17 | 0.00 | 0.00 | 4.30 |
142 | 147 | 6.387041 | TCTGTGTAATGTATACTTCCTCCG | 57.613 | 41.667 | 4.17 | 0.00 | 0.00 | 4.63 |
143 | 148 | 5.889853 | TCTGTGTAATGTATACTTCCTCCGT | 59.110 | 40.000 | 4.17 | 0.00 | 0.00 | 4.69 |
144 | 149 | 6.379133 | TCTGTGTAATGTATACTTCCTCCGTT | 59.621 | 38.462 | 4.17 | 0.00 | 0.00 | 4.44 |
145 | 150 | 6.567050 | TGTGTAATGTATACTTCCTCCGTTC | 58.433 | 40.000 | 4.17 | 0.00 | 0.00 | 3.95 |
146 | 151 | 5.981915 | GTGTAATGTATACTTCCTCCGTTCC | 59.018 | 44.000 | 4.17 | 0.00 | 0.00 | 3.62 |
147 | 152 | 5.895534 | TGTAATGTATACTTCCTCCGTTCCT | 59.104 | 40.000 | 4.17 | 0.00 | 0.00 | 3.36 |
148 | 153 | 7.013655 | GTGTAATGTATACTTCCTCCGTTCCTA | 59.986 | 40.741 | 4.17 | 0.00 | 0.00 | 2.94 |
149 | 154 | 7.560991 | TGTAATGTATACTTCCTCCGTTCCTAA | 59.439 | 37.037 | 4.17 | 0.00 | 0.00 | 2.69 |
150 | 155 | 7.427989 | AATGTATACTTCCTCCGTTCCTAAA | 57.572 | 36.000 | 4.17 | 0.00 | 0.00 | 1.85 |
151 | 156 | 7.613551 | ATGTATACTTCCTCCGTTCCTAAAT | 57.386 | 36.000 | 4.17 | 0.00 | 0.00 | 1.40 |
152 | 157 | 8.716674 | ATGTATACTTCCTCCGTTCCTAAATA | 57.283 | 34.615 | 4.17 | 0.00 | 0.00 | 1.40 |
153 | 158 | 8.716674 | TGTATACTTCCTCCGTTCCTAAATAT | 57.283 | 34.615 | 4.17 | 0.00 | 0.00 | 1.28 |
154 | 159 | 9.151177 | TGTATACTTCCTCCGTTCCTAAATATT | 57.849 | 33.333 | 4.17 | 0.00 | 0.00 | 1.28 |
155 | 160 | 9.993454 | GTATACTTCCTCCGTTCCTAAATATTT | 57.007 | 33.333 | 5.89 | 5.89 | 0.00 | 1.40 |
156 | 161 | 8.904099 | ATACTTCCTCCGTTCCTAAATATTTG | 57.096 | 34.615 | 11.05 | 1.40 | 0.00 | 2.32 |
157 | 162 | 5.589050 | ACTTCCTCCGTTCCTAAATATTTGC | 59.411 | 40.000 | 11.05 | 0.00 | 0.00 | 3.68 |
158 | 163 | 5.105567 | TCCTCCGTTCCTAAATATTTGCA | 57.894 | 39.130 | 11.05 | 0.00 | 0.00 | 4.08 |
159 | 164 | 5.690865 | TCCTCCGTTCCTAAATATTTGCAT | 58.309 | 37.500 | 11.05 | 0.00 | 0.00 | 3.96 |
160 | 165 | 6.126409 | TCCTCCGTTCCTAAATATTTGCATT | 58.874 | 36.000 | 11.05 | 0.00 | 0.00 | 3.56 |
161 | 166 | 6.605594 | TCCTCCGTTCCTAAATATTTGCATTT | 59.394 | 34.615 | 11.05 | 0.00 | 32.91 | 2.32 |
162 | 167 | 7.123547 | TCCTCCGTTCCTAAATATTTGCATTTT | 59.876 | 33.333 | 11.05 | 0.00 | 30.84 | 1.82 |
163 | 168 | 7.763985 | CCTCCGTTCCTAAATATTTGCATTTTT | 59.236 | 33.333 | 11.05 | 0.00 | 30.84 | 1.94 |
164 | 169 | 9.796120 | CTCCGTTCCTAAATATTTGCATTTTTA | 57.204 | 29.630 | 11.05 | 0.00 | 30.84 | 1.52 |
165 | 170 | 9.796120 | TCCGTTCCTAAATATTTGCATTTTTAG | 57.204 | 29.630 | 11.05 | 0.00 | 35.36 | 1.85 |
166 | 171 | 9.796120 | CCGTTCCTAAATATTTGCATTTTTAGA | 57.204 | 29.630 | 11.05 | 0.00 | 36.64 | 2.10 |
181 | 186 | 9.638239 | TGCATTTTTAGAGATTTCAAATGTACC | 57.362 | 29.630 | 8.43 | 0.00 | 37.23 | 3.34 |
182 | 187 | 9.638239 | GCATTTTTAGAGATTTCAAATGTACCA | 57.362 | 29.630 | 8.43 | 0.00 | 37.23 | 3.25 |
188 | 193 | 7.539712 | AGAGATTTCAAATGTACCACATACG | 57.460 | 36.000 | 0.00 | 0.00 | 37.97 | 3.06 |
189 | 194 | 6.538742 | AGAGATTTCAAATGTACCACATACGG | 59.461 | 38.462 | 0.00 | 0.00 | 37.97 | 4.02 |
190 | 195 | 6.411376 | AGATTTCAAATGTACCACATACGGA | 58.589 | 36.000 | 0.00 | 0.00 | 37.97 | 4.69 |
191 | 196 | 7.054124 | AGATTTCAAATGTACCACATACGGAT | 58.946 | 34.615 | 0.00 | 0.00 | 37.97 | 4.18 |
192 | 197 | 6.429791 | TTTCAAATGTACCACATACGGATG | 57.570 | 37.500 | 5.94 | 5.94 | 37.97 | 3.51 |
193 | 198 | 3.874543 | TCAAATGTACCACATACGGATGC | 59.125 | 43.478 | 7.78 | 0.00 | 37.97 | 3.91 |
194 | 199 | 3.552132 | AATGTACCACATACGGATGCA | 57.448 | 42.857 | 7.78 | 0.00 | 37.97 | 3.96 |
195 | 200 | 3.769739 | ATGTACCACATACGGATGCAT | 57.230 | 42.857 | 7.78 | 0.00 | 36.99 | 3.96 |
196 | 201 | 4.882842 | ATGTACCACATACGGATGCATA | 57.117 | 40.909 | 7.78 | 0.00 | 36.99 | 3.14 |
197 | 202 | 4.882842 | TGTACCACATACGGATGCATAT | 57.117 | 40.909 | 7.78 | 0.00 | 36.43 | 1.78 |
198 | 203 | 5.986501 | TGTACCACATACGGATGCATATA | 57.013 | 39.130 | 7.78 | 0.00 | 36.43 | 0.86 |
199 | 204 | 5.961272 | TGTACCACATACGGATGCATATAG | 58.039 | 41.667 | 7.78 | 0.00 | 36.43 | 1.31 |
200 | 205 | 5.712917 | TGTACCACATACGGATGCATATAGA | 59.287 | 40.000 | 7.78 | 0.00 | 36.43 | 1.98 |
201 | 206 | 5.073311 | ACCACATACGGATGCATATAGAC | 57.927 | 43.478 | 7.78 | 0.00 | 36.43 | 2.59 |
202 | 207 | 4.526650 | ACCACATACGGATGCATATAGACA | 59.473 | 41.667 | 7.78 | 0.00 | 36.43 | 3.41 |
203 | 208 | 5.187772 | ACCACATACGGATGCATATAGACAT | 59.812 | 40.000 | 7.78 | 0.00 | 36.43 | 3.06 |
204 | 209 | 6.379988 | ACCACATACGGATGCATATAGACATA | 59.620 | 38.462 | 7.78 | 0.00 | 36.43 | 2.29 |
205 | 210 | 7.069950 | ACCACATACGGATGCATATAGACATAT | 59.930 | 37.037 | 7.78 | 0.00 | 36.43 | 1.78 |
206 | 211 | 7.928167 | CCACATACGGATGCATATAGACATATT | 59.072 | 37.037 | 7.78 | 0.00 | 36.43 | 1.28 |
207 | 212 | 9.317936 | CACATACGGATGCATATAGACATATTT | 57.682 | 33.333 | 7.78 | 0.00 | 36.43 | 1.40 |
208 | 213 | 9.890629 | ACATACGGATGCATATAGACATATTTT | 57.109 | 29.630 | 7.78 | 0.00 | 36.43 | 1.82 |
212 | 217 | 9.809096 | ACGGATGCATATAGACATATTTTAGAG | 57.191 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
213 | 218 | 8.759641 | CGGATGCATATAGACATATTTTAGAGC | 58.240 | 37.037 | 0.00 | 0.00 | 0.00 | 4.09 |
214 | 219 | 8.759641 | GGATGCATATAGACATATTTTAGAGCG | 58.240 | 37.037 | 0.00 | 0.00 | 0.00 | 5.03 |
215 | 220 | 9.307121 | GATGCATATAGACATATTTTAGAGCGT | 57.693 | 33.333 | 0.00 | 0.00 | 0.00 | 5.07 |
217 | 222 | 9.788960 | TGCATATAGACATATTTTAGAGCGTAG | 57.211 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
223 | 228 | 8.804688 | AGACATATTTTAGAGCGTAGATTCAC | 57.195 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
224 | 229 | 8.634444 | AGACATATTTTAGAGCGTAGATTCACT | 58.366 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
225 | 230 | 8.804688 | ACATATTTTAGAGCGTAGATTCACTC | 57.195 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
226 | 231 | 8.414003 | ACATATTTTAGAGCGTAGATTCACTCA | 58.586 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
227 | 232 | 9.416794 | CATATTTTAGAGCGTAGATTCACTCAT | 57.583 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
228 | 233 | 9.988815 | ATATTTTAGAGCGTAGATTCACTCATT | 57.011 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
229 | 234 | 8.723942 | ATTTTAGAGCGTAGATTCACTCATTT | 57.276 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
230 | 235 | 8.547967 | TTTTAGAGCGTAGATTCACTCATTTT | 57.452 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
231 | 236 | 7.525688 | TTAGAGCGTAGATTCACTCATTTTG | 57.474 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
232 | 237 | 4.331168 | AGAGCGTAGATTCACTCATTTTGC | 59.669 | 41.667 | 0.00 | 0.00 | 0.00 | 3.68 |
233 | 238 | 4.256920 | AGCGTAGATTCACTCATTTTGCT | 58.743 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
234 | 239 | 4.331168 | AGCGTAGATTCACTCATTTTGCTC | 59.669 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
235 | 240 | 4.494855 | GCGTAGATTCACTCATTTTGCTCC | 60.495 | 45.833 | 0.00 | 0.00 | 0.00 | 4.70 |
236 | 241 | 4.259970 | CGTAGATTCACTCATTTTGCTCCG | 60.260 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
237 | 242 | 3.679389 | AGATTCACTCATTTTGCTCCGT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
238 | 243 | 4.832248 | AGATTCACTCATTTTGCTCCGTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
239 | 244 | 5.431765 | AGATTCACTCATTTTGCTCCGTAT | 58.568 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
240 | 245 | 4.944962 | TTCACTCATTTTGCTCCGTATG | 57.055 | 40.909 | 0.00 | 0.00 | 0.00 | 2.39 |
241 | 246 | 3.937814 | TCACTCATTTTGCTCCGTATGT | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
242 | 247 | 5.079689 | TCACTCATTTTGCTCCGTATGTA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
243 | 248 | 5.109210 | TCACTCATTTTGCTCCGTATGTAG | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
244 | 249 | 4.870426 | CACTCATTTTGCTCCGTATGTAGT | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
245 | 250 | 5.005779 | CACTCATTTTGCTCCGTATGTAGTC | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
246 | 251 | 5.079689 | TCATTTTGCTCCGTATGTAGTCA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
247 | 252 | 4.868171 | TCATTTTGCTCCGTATGTAGTCAC | 59.132 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
248 | 253 | 4.530710 | TTTTGCTCCGTATGTAGTCACT | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
249 | 254 | 4.530710 | TTTGCTCCGTATGTAGTCACTT | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
250 | 255 | 3.503827 | TGCTCCGTATGTAGTCACTTG | 57.496 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
251 | 256 | 2.823747 | TGCTCCGTATGTAGTCACTTGT | 59.176 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
252 | 257 | 3.257375 | TGCTCCGTATGTAGTCACTTGTT | 59.743 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
253 | 258 | 3.612860 | GCTCCGTATGTAGTCACTTGTTG | 59.387 | 47.826 | 0.00 | 0.00 | 0.00 | 3.33 |
254 | 259 | 4.617530 | GCTCCGTATGTAGTCACTTGTTGA | 60.618 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
255 | 260 | 5.456548 | TCCGTATGTAGTCACTTGTTGAA | 57.543 | 39.130 | 0.00 | 0.00 | 35.39 | 2.69 |
256 | 261 | 5.845103 | TCCGTATGTAGTCACTTGTTGAAA | 58.155 | 37.500 | 0.00 | 0.00 | 35.39 | 2.69 |
257 | 262 | 6.460781 | TCCGTATGTAGTCACTTGTTGAAAT | 58.539 | 36.000 | 0.00 | 0.00 | 35.39 | 2.17 |
258 | 263 | 6.588756 | TCCGTATGTAGTCACTTGTTGAAATC | 59.411 | 38.462 | 0.00 | 0.00 | 35.39 | 2.17 |
259 | 264 | 6.590292 | CCGTATGTAGTCACTTGTTGAAATCT | 59.410 | 38.462 | 0.00 | 0.00 | 35.39 | 2.40 |
260 | 265 | 7.117812 | CCGTATGTAGTCACTTGTTGAAATCTT | 59.882 | 37.037 | 0.00 | 0.00 | 35.39 | 2.40 |
261 | 266 | 8.495949 | CGTATGTAGTCACTTGTTGAAATCTTT | 58.504 | 33.333 | 0.00 | 0.00 | 35.39 | 2.52 |
264 | 269 | 9.778741 | ATGTAGTCACTTGTTGAAATCTTTAGA | 57.221 | 29.630 | 0.00 | 0.00 | 35.39 | 2.10 |
265 | 270 | 9.607988 | TGTAGTCACTTGTTGAAATCTTTAGAA | 57.392 | 29.630 | 0.00 | 0.00 | 35.39 | 2.10 |
268 | 273 | 9.396022 | AGTCACTTGTTGAAATCTTTAGAAAGA | 57.604 | 29.630 | 7.15 | 7.15 | 41.72 | 2.52 |
269 | 274 | 9.439537 | GTCACTTGTTGAAATCTTTAGAAAGAC | 57.560 | 33.333 | 6.85 | 0.00 | 40.95 | 3.01 |
270 | 275 | 9.173021 | TCACTTGTTGAAATCTTTAGAAAGACA | 57.827 | 29.630 | 6.85 | 0.00 | 46.80 | 3.41 |
271 | 276 | 9.787532 | CACTTGTTGAAATCTTTAGAAAGACAA | 57.212 | 29.630 | 6.85 | 4.98 | 46.80 | 3.18 |
286 | 291 | 9.947433 | TTAGAAAGACAAATATTTAGGAACGGA | 57.053 | 29.630 | 0.00 | 0.00 | 0.00 | 4.69 |
287 | 292 | 8.494016 | AGAAAGACAAATATTTAGGAACGGAG | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
288 | 293 | 7.553044 | AGAAAGACAAATATTTAGGAACGGAGG | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
289 | 294 | 5.681639 | AGACAAATATTTAGGAACGGAGGG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
290 | 295 | 5.427481 | AGACAAATATTTAGGAACGGAGGGA | 59.573 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
291 | 296 | 5.681639 | ACAAATATTTAGGAACGGAGGGAG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
292 | 297 | 5.191124 | ACAAATATTTAGGAACGGAGGGAGT | 59.809 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
317 | 322 | 4.806342 | TTGTAGGTGTCGAAAAAGAAGC | 57.194 | 40.909 | 0.00 | 0.00 | 0.00 | 3.86 |
339 | 344 | 5.774690 | AGCAAGGTGGTTGAAATCTTTATCA | 59.225 | 36.000 | 0.00 | 0.00 | 38.60 | 2.15 |
349 | 354 | 7.807907 | GGTTGAAATCTTTATCATGAAACACGT | 59.192 | 33.333 | 0.00 | 0.00 | 0.00 | 4.49 |
357 | 362 | 9.123709 | TCTTTATCATGAAACACGTAAAATTGC | 57.876 | 29.630 | 0.00 | 0.00 | 0.00 | 3.56 |
386 | 397 | 0.179034 | TGCCCACACCAAAAATTGCC | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
387 | 398 | 0.179034 | GCCCACACCAAAAATTGCCA | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
404 | 415 | 3.815809 | TGCCACTCCCCTAAATAAATCG | 58.184 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
428 | 439 | 6.524933 | CGAAGAAACATTACACAACAACACAA | 59.475 | 34.615 | 0.00 | 0.00 | 0.00 | 3.33 |
460 | 471 | 5.822519 | CAGATGGAAAATAAACGGAGATCCA | 59.177 | 40.000 | 0.00 | 0.00 | 39.59 | 3.41 |
461 | 472 | 6.488006 | CAGATGGAAAATAAACGGAGATCCAT | 59.512 | 38.462 | 4.18 | 4.18 | 46.07 | 3.41 |
462 | 473 | 6.884280 | ATGGAAAATAAACGGAGATCCATC | 57.116 | 37.500 | 0.00 | 0.00 | 41.14 | 3.51 |
463 | 474 | 5.750524 | TGGAAAATAAACGGAGATCCATCA | 58.249 | 37.500 | 0.00 | 0.00 | 35.14 | 3.07 |
464 | 475 | 6.184068 | TGGAAAATAAACGGAGATCCATCAA | 58.816 | 36.000 | 0.00 | 0.00 | 35.14 | 2.57 |
465 | 476 | 6.094881 | TGGAAAATAAACGGAGATCCATCAAC | 59.905 | 38.462 | 0.00 | 0.00 | 35.14 | 3.18 |
466 | 477 | 5.734855 | AAATAAACGGAGATCCATCAACG | 57.265 | 39.130 | 0.00 | 2.53 | 35.14 | 4.10 |
467 | 478 | 4.665833 | ATAAACGGAGATCCATCAACGA | 57.334 | 40.909 | 9.12 | 0.00 | 35.14 | 3.85 |
468 | 479 | 2.295253 | AACGGAGATCCATCAACGAC | 57.705 | 50.000 | 9.12 | 0.00 | 35.14 | 4.34 |
469 | 480 | 1.475403 | ACGGAGATCCATCAACGACT | 58.525 | 50.000 | 9.12 | 0.00 | 35.14 | 4.18 |
470 | 481 | 1.135139 | ACGGAGATCCATCAACGACTG | 59.865 | 52.381 | 9.12 | 0.00 | 35.14 | 3.51 |
471 | 482 | 1.405463 | CGGAGATCCATCAACGACTGA | 59.595 | 52.381 | 0.00 | 0.00 | 38.81 | 3.41 |
472 | 483 | 2.796383 | CGGAGATCCATCAACGACTGAC | 60.796 | 54.545 | 0.00 | 0.00 | 36.69 | 3.51 |
473 | 484 | 2.428890 | GGAGATCCATCAACGACTGACT | 59.571 | 50.000 | 0.00 | 0.00 | 36.69 | 3.41 |
474 | 485 | 3.118956 | GGAGATCCATCAACGACTGACTT | 60.119 | 47.826 | 0.00 | 0.00 | 36.69 | 3.01 |
475 | 486 | 4.499183 | GAGATCCATCAACGACTGACTTT | 58.501 | 43.478 | 0.00 | 0.00 | 36.69 | 2.66 |
476 | 487 | 4.499183 | AGATCCATCAACGACTGACTTTC | 58.501 | 43.478 | 0.00 | 0.00 | 36.69 | 2.62 |
477 | 488 | 3.744238 | TCCATCAACGACTGACTTTCA | 57.256 | 42.857 | 0.00 | 0.00 | 36.69 | 2.69 |
502 | 513 | 8.443937 | CAGTCCAAAAATTGTAGCTTCTAGTAC | 58.556 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
552 | 563 | 2.154567 | ATGTGCCTGCTTGGATTGAT | 57.845 | 45.000 | 0.49 | 0.00 | 38.35 | 2.57 |
558 | 569 | 2.223340 | GCCTGCTTGGATTGATTGTACG | 60.223 | 50.000 | 0.49 | 0.00 | 38.35 | 3.67 |
571 | 582 | 3.435327 | TGATTGTACGCAGTTCCATCAAC | 59.565 | 43.478 | 0.00 | 0.00 | 37.78 | 3.18 |
714 | 725 | 6.126863 | TCATGGGTTAGAATGTTTCTGTCT | 57.873 | 37.500 | 0.00 | 0.00 | 40.94 | 3.41 |
735 | 772 | 2.590821 | AGTGACTGCCATTGCTTCTTT | 58.409 | 42.857 | 0.00 | 0.00 | 38.71 | 2.52 |
744 | 781 | 4.219507 | TGCCATTGCTTCTTTTCCGATTAA | 59.780 | 37.500 | 0.00 | 0.00 | 38.71 | 1.40 |
1044 | 1302 | 0.984961 | TGCTAGGGATGGCTGAAGCT | 60.985 | 55.000 | 1.74 | 0.00 | 41.70 | 3.74 |
1051 | 1309 | 1.427592 | GATGGCTGAAGCTCGAGCAC | 61.428 | 60.000 | 36.87 | 28.52 | 45.16 | 4.40 |
1108 | 1366 | 1.900351 | CCTCTGAACCGCCTGATCA | 59.100 | 57.895 | 0.00 | 0.00 | 0.00 | 2.92 |
1251 | 1509 | 1.603802 | AGTCTCATTTGCAACCACACG | 59.396 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
1419 | 1677 | 3.373438 | CCATCCCCATGAAATCTGGTCTT | 60.373 | 47.826 | 0.00 | 0.00 | 30.57 | 3.01 |
1628 | 1886 | 1.675219 | GCCCTGGGTCGTGTTCTTA | 59.325 | 57.895 | 15.56 | 0.00 | 0.00 | 2.10 |
1656 | 1914 | 7.174772 | ACATATTCTGCATTAACAGTTCACACA | 59.825 | 33.333 | 0.00 | 0.00 | 38.84 | 3.72 |
1687 | 1945 | 3.636300 | TCAATTTGTTCCCCACAAGACAG | 59.364 | 43.478 | 0.00 | 0.00 | 46.37 | 3.51 |
1876 | 2134 | 5.222079 | TGCCGATAAAGGTTATATCTGCA | 57.778 | 39.130 | 8.07 | 8.07 | 43.28 | 4.41 |
2097 | 2356 | 5.484734 | ACTATCTCACTAAGTACCCCCTT | 57.515 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
2129 | 2388 | 7.287005 | TGAAATATAAGGCTTCTTCGGTCTCTA | 59.713 | 37.037 | 1.30 | 0.00 | 32.23 | 2.43 |
2171 | 2432 | 8.032451 | ACCAACAATTGCTTTAATATGTGGTAC | 58.968 | 33.333 | 5.05 | 0.00 | 30.86 | 3.34 |
2501 | 2888 | 3.949754 | TCCATCAAGATTCATGAGCAACC | 59.050 | 43.478 | 0.00 | 0.00 | 0.00 | 3.77 |
2597 | 2984 | 0.729690 | GTTTCCTGGATTCGCTCTGC | 59.270 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2615 | 3002 | 2.647784 | CACAAACACGTGCCAACAC | 58.352 | 52.632 | 17.22 | 0.00 | 43.76 | 3.32 |
2649 | 3043 | 1.069765 | CTGGAACACTCACGGCACT | 59.930 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
2789 | 3187 | 6.653320 | ACAAAGACTCACTGAACAACTAACAA | 59.347 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
3131 | 3693 | 1.456544 | GTTGCCACACATTCATTTGCG | 59.543 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
3353 | 3918 | 4.631131 | TGGTCATATGATTGCTACTTCCG | 58.369 | 43.478 | 9.02 | 0.00 | 0.00 | 4.30 |
3354 | 3919 | 4.343814 | TGGTCATATGATTGCTACTTCCGA | 59.656 | 41.667 | 9.02 | 0.00 | 0.00 | 4.55 |
3613 | 4179 | 2.866762 | GTGTTGAGAACAAGAGCGACTT | 59.133 | 45.455 | 0.00 | 0.00 | 44.16 | 3.01 |
3892 | 4458 | 8.747471 | ACAACTACAAGTATAAACTACTCCCTC | 58.253 | 37.037 | 0.00 | 0.00 | 33.75 | 4.30 |
3893 | 4459 | 7.894753 | ACTACAAGTATAAACTACTCCCTCC | 57.105 | 40.000 | 0.00 | 0.00 | 33.75 | 4.30 |
3894 | 4460 | 5.848833 | ACAAGTATAAACTACTCCCTCCG | 57.151 | 43.478 | 0.00 | 0.00 | 33.75 | 4.63 |
4017 | 4583 | 8.547967 | TGTAGTCCACATTGAAATCTCTAAAC | 57.452 | 34.615 | 0.00 | 0.00 | 30.04 | 2.01 |
4045 | 4611 | 9.364653 | GACTTATATTTAGGAACAGAGGGAGTA | 57.635 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
4367 | 4934 | 1.878656 | GCTCAGACACTACACCGCCT | 61.879 | 60.000 | 0.00 | 0.00 | 0.00 | 5.52 |
4649 | 5216 | 1.474677 | GGTGTCATCAGCTCCATGGAG | 60.475 | 57.143 | 33.73 | 33.73 | 44.56 | 3.86 |
4710 | 5277 | 5.464588 | TGAAGGAAATCCATACATCCCAA | 57.535 | 39.130 | 1.67 | 0.00 | 38.89 | 4.12 |
4834 | 5401 | 0.531974 | GAGTGCAAACGGACACCAGA | 60.532 | 55.000 | 0.00 | 0.00 | 37.51 | 3.86 |
4932 | 5499 | 7.377398 | TGATATAACAAAAATGCAGTGCACTT | 58.623 | 30.769 | 22.44 | 14.14 | 43.04 | 3.16 |
4984 | 5551 | 5.302059 | GTGAGCCCATCTCTACTGTATGTTA | 59.698 | 44.000 | 0.00 | 0.00 | 42.38 | 2.41 |
4987 | 5554 | 4.932200 | GCCCATCTCTACTGTATGTTATGC | 59.068 | 45.833 | 0.00 | 0.00 | 0.00 | 3.14 |
5508 | 6077 | 3.660865 | AGTGTACGACTTCATTCCCAAC | 58.339 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
5722 | 6291 | 0.375106 | GGATTTCGGCGCTTCAAGAG | 59.625 | 55.000 | 7.64 | 0.00 | 0.00 | 2.85 |
6130 | 9116 | 6.896613 | CGTACAAATTCATCTCAAGTTGATCG | 59.103 | 38.462 | 5.91 | 0.00 | 35.41 | 3.69 |
6175 | 9161 | 4.573210 | CCAGTCCATGGCCATGAG | 57.427 | 61.111 | 41.32 | 30.62 | 43.83 | 2.90 |
6288 | 9274 | 2.224281 | CCCCGCTAGATATGCTTGTCAA | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
6294 | 9280 | 4.987912 | GCTAGATATGCTTGTCAACTCTCC | 59.012 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
6334 | 9320 | 4.067896 | TGTTCTTTCTAAGCTGAGGCAAG | 58.932 | 43.478 | 0.00 | 1.62 | 41.70 | 4.01 |
6363 | 9377 | 2.092968 | TCTTGTAAGGCCCTACATGCAG | 60.093 | 50.000 | 14.99 | 9.78 | 31.96 | 4.41 |
6403 | 9418 | 8.848474 | AAATGTACTATTATGCAGTACCATCC | 57.152 | 34.615 | 9.85 | 0.00 | 45.10 | 3.51 |
6630 | 9648 | 9.313118 | TCTTTTTATTCTTTGAACTTTCCAAGC | 57.687 | 29.630 | 0.00 | 0.00 | 31.91 | 4.01 |
6667 | 9685 | 5.365403 | TTTAGTCAAAAGGTTACATGCGG | 57.635 | 39.130 | 0.00 | 0.00 | 0.00 | 5.69 |
6714 | 9732 | 1.108776 | TACGGTGTAGGGTCTCATGC | 58.891 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
6785 | 9810 | 7.484324 | GCTTTCAGCTCTTCAATCTTCATAAAC | 59.516 | 37.037 | 0.00 | 0.00 | 38.45 | 2.01 |
6786 | 9811 | 7.984422 | TTCAGCTCTTCAATCTTCATAAACA | 57.016 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
6806 | 9831 | 2.114616 | AGAAGCATCCCTGAGGTGTAG | 58.885 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
6819 | 9844 | 0.820871 | GGTGTAGAGAGCCCACTGAG | 59.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
76 | 78 | 7.330208 | ACACGTTCAAAGCTTCGTATATTTAGT | 59.670 | 33.333 | 10.18 | 1.20 | 35.13 | 2.24 |
97 | 102 | 3.988379 | AATGCTTCATTGTTCACACGT | 57.012 | 38.095 | 0.00 | 0.00 | 32.39 | 4.49 |
124 | 129 | 6.402456 | AGGAACGGAGGAAGTATACATTAC | 57.598 | 41.667 | 5.50 | 0.00 | 0.00 | 1.89 |
132 | 137 | 6.764560 | GCAAATATTTAGGAACGGAGGAAGTA | 59.235 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
133 | 138 | 5.589050 | GCAAATATTTAGGAACGGAGGAAGT | 59.411 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
134 | 139 | 5.588648 | TGCAAATATTTAGGAACGGAGGAAG | 59.411 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
135 | 140 | 5.502079 | TGCAAATATTTAGGAACGGAGGAA | 58.498 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
136 | 141 | 5.105567 | TGCAAATATTTAGGAACGGAGGA | 57.894 | 39.130 | 0.00 | 0.00 | 0.00 | 3.71 |
137 | 142 | 6.391227 | AATGCAAATATTTAGGAACGGAGG | 57.609 | 37.500 | 0.00 | 0.00 | 0.00 | 4.30 |
138 | 143 | 8.702163 | AAAAATGCAAATATTTAGGAACGGAG | 57.298 | 30.769 | 0.00 | 0.00 | 30.47 | 4.63 |
139 | 144 | 9.796120 | CTAAAAATGCAAATATTTAGGAACGGA | 57.204 | 29.630 | 0.00 | 0.00 | 33.69 | 4.69 |
140 | 145 | 9.796120 | TCTAAAAATGCAAATATTTAGGAACGG | 57.204 | 29.630 | 16.87 | 0.00 | 36.48 | 4.44 |
155 | 160 | 9.638239 | GGTACATTTGAAATCTCTAAAAATGCA | 57.362 | 29.630 | 6.39 | 0.00 | 40.32 | 3.96 |
156 | 161 | 9.638239 | TGGTACATTTGAAATCTCTAAAAATGC | 57.362 | 29.630 | 6.39 | 0.00 | 40.32 | 3.56 |
162 | 167 | 9.093970 | CGTATGTGGTACATTTGAAATCTCTAA | 57.906 | 33.333 | 0.00 | 0.00 | 44.52 | 2.10 |
163 | 168 | 7.709182 | CCGTATGTGGTACATTTGAAATCTCTA | 59.291 | 37.037 | 0.00 | 0.00 | 44.52 | 2.43 |
164 | 169 | 6.538742 | CCGTATGTGGTACATTTGAAATCTCT | 59.461 | 38.462 | 0.00 | 0.00 | 44.52 | 3.10 |
165 | 170 | 6.537301 | TCCGTATGTGGTACATTTGAAATCTC | 59.463 | 38.462 | 0.00 | 0.00 | 44.52 | 2.75 |
166 | 171 | 6.411376 | TCCGTATGTGGTACATTTGAAATCT | 58.589 | 36.000 | 0.00 | 0.00 | 44.52 | 2.40 |
167 | 172 | 6.671614 | TCCGTATGTGGTACATTTGAAATC | 57.328 | 37.500 | 0.00 | 0.00 | 44.52 | 2.17 |
168 | 173 | 6.459573 | GCATCCGTATGTGGTACATTTGAAAT | 60.460 | 38.462 | 0.00 | 0.00 | 44.52 | 2.17 |
169 | 174 | 5.163703 | GCATCCGTATGTGGTACATTTGAAA | 60.164 | 40.000 | 0.00 | 0.00 | 44.52 | 2.69 |
170 | 175 | 4.334203 | GCATCCGTATGTGGTACATTTGAA | 59.666 | 41.667 | 0.00 | 0.00 | 44.52 | 2.69 |
171 | 176 | 3.874543 | GCATCCGTATGTGGTACATTTGA | 59.125 | 43.478 | 0.00 | 0.00 | 44.52 | 2.69 |
172 | 177 | 3.625313 | TGCATCCGTATGTGGTACATTTG | 59.375 | 43.478 | 0.00 | 0.00 | 44.52 | 2.32 |
173 | 178 | 3.879998 | TGCATCCGTATGTGGTACATTT | 58.120 | 40.909 | 0.00 | 0.00 | 44.52 | 2.32 |
174 | 179 | 3.552132 | TGCATCCGTATGTGGTACATT | 57.448 | 42.857 | 0.00 | 0.00 | 44.52 | 2.71 |
175 | 180 | 3.769739 | ATGCATCCGTATGTGGTACAT | 57.230 | 42.857 | 0.00 | 0.00 | 44.52 | 2.29 |
176 | 181 | 4.882842 | ATATGCATCCGTATGTGGTACA | 57.117 | 40.909 | 0.19 | 0.00 | 35.38 | 2.90 |
177 | 182 | 6.034591 | GTCTATATGCATCCGTATGTGGTAC | 58.965 | 44.000 | 0.19 | 0.00 | 35.38 | 3.34 |
178 | 183 | 5.712917 | TGTCTATATGCATCCGTATGTGGTA | 59.287 | 40.000 | 0.19 | 0.00 | 35.38 | 3.25 |
179 | 184 | 4.526650 | TGTCTATATGCATCCGTATGTGGT | 59.473 | 41.667 | 0.19 | 0.00 | 35.38 | 4.16 |
180 | 185 | 5.072040 | TGTCTATATGCATCCGTATGTGG | 57.928 | 43.478 | 0.19 | 0.00 | 35.38 | 4.17 |
181 | 186 | 8.877808 | AATATGTCTATATGCATCCGTATGTG | 57.122 | 34.615 | 0.19 | 0.00 | 35.38 | 3.21 |
182 | 187 | 9.890629 | AAAATATGTCTATATGCATCCGTATGT | 57.109 | 29.630 | 0.19 | 0.00 | 35.38 | 2.29 |
186 | 191 | 9.809096 | CTCTAAAATATGTCTATATGCATCCGT | 57.191 | 33.333 | 0.19 | 0.00 | 30.00 | 4.69 |
187 | 192 | 8.759641 | GCTCTAAAATATGTCTATATGCATCCG | 58.240 | 37.037 | 0.19 | 0.00 | 30.00 | 4.18 |
188 | 193 | 8.759641 | CGCTCTAAAATATGTCTATATGCATCC | 58.240 | 37.037 | 0.19 | 0.00 | 30.00 | 3.51 |
189 | 194 | 9.307121 | ACGCTCTAAAATATGTCTATATGCATC | 57.693 | 33.333 | 0.19 | 0.00 | 30.00 | 3.91 |
191 | 196 | 9.788960 | CTACGCTCTAAAATATGTCTATATGCA | 57.211 | 33.333 | 0.00 | 0.00 | 30.00 | 3.96 |
197 | 202 | 9.894783 | GTGAATCTACGCTCTAAAATATGTCTA | 57.105 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
198 | 203 | 8.634444 | AGTGAATCTACGCTCTAAAATATGTCT | 58.366 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
199 | 204 | 8.804688 | AGTGAATCTACGCTCTAAAATATGTC | 57.195 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
200 | 205 | 8.414003 | TGAGTGAATCTACGCTCTAAAATATGT | 58.586 | 33.333 | 0.00 | 0.00 | 44.58 | 2.29 |
201 | 206 | 8.803201 | TGAGTGAATCTACGCTCTAAAATATG | 57.197 | 34.615 | 0.00 | 0.00 | 44.58 | 1.78 |
202 | 207 | 9.988815 | AATGAGTGAATCTACGCTCTAAAATAT | 57.011 | 29.630 | 0.00 | 0.00 | 44.58 | 1.28 |
203 | 208 | 9.817809 | AAATGAGTGAATCTACGCTCTAAAATA | 57.182 | 29.630 | 0.00 | 0.00 | 44.58 | 1.40 |
204 | 209 | 8.723942 | AAATGAGTGAATCTACGCTCTAAAAT | 57.276 | 30.769 | 0.00 | 0.00 | 44.58 | 1.82 |
205 | 210 | 8.443160 | CAAAATGAGTGAATCTACGCTCTAAAA | 58.557 | 33.333 | 0.00 | 0.00 | 44.58 | 1.52 |
206 | 211 | 7.413000 | GCAAAATGAGTGAATCTACGCTCTAAA | 60.413 | 37.037 | 0.00 | 0.00 | 44.58 | 1.85 |
207 | 212 | 6.036083 | GCAAAATGAGTGAATCTACGCTCTAA | 59.964 | 38.462 | 0.00 | 0.00 | 44.58 | 2.10 |
208 | 213 | 5.520288 | GCAAAATGAGTGAATCTACGCTCTA | 59.480 | 40.000 | 0.00 | 0.00 | 44.58 | 2.43 |
209 | 214 | 4.331168 | GCAAAATGAGTGAATCTACGCTCT | 59.669 | 41.667 | 0.00 | 0.00 | 44.58 | 4.09 |
210 | 215 | 4.331168 | AGCAAAATGAGTGAATCTACGCTC | 59.669 | 41.667 | 0.00 | 0.00 | 44.55 | 5.03 |
211 | 216 | 4.256920 | AGCAAAATGAGTGAATCTACGCT | 58.743 | 39.130 | 0.00 | 0.00 | 0.00 | 5.07 |
212 | 217 | 4.494855 | GGAGCAAAATGAGTGAATCTACGC | 60.495 | 45.833 | 0.00 | 0.00 | 0.00 | 4.42 |
213 | 218 | 4.259970 | CGGAGCAAAATGAGTGAATCTACG | 60.260 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
214 | 219 | 4.631813 | ACGGAGCAAAATGAGTGAATCTAC | 59.368 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
215 | 220 | 4.832248 | ACGGAGCAAAATGAGTGAATCTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
216 | 221 | 3.679389 | ACGGAGCAAAATGAGTGAATCT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
217 | 222 | 5.065218 | ACATACGGAGCAAAATGAGTGAATC | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
218 | 223 | 4.943705 | ACATACGGAGCAAAATGAGTGAAT | 59.056 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
219 | 224 | 4.323417 | ACATACGGAGCAAAATGAGTGAA | 58.677 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
220 | 225 | 3.937814 | ACATACGGAGCAAAATGAGTGA | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
221 | 226 | 4.870426 | ACTACATACGGAGCAAAATGAGTG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
222 | 227 | 5.086104 | ACTACATACGGAGCAAAATGAGT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
223 | 228 | 5.005779 | GTGACTACATACGGAGCAAAATGAG | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
224 | 229 | 4.868171 | GTGACTACATACGGAGCAAAATGA | 59.132 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
225 | 230 | 4.870426 | AGTGACTACATACGGAGCAAAATG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
226 | 231 | 5.086104 | AGTGACTACATACGGAGCAAAAT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
227 | 232 | 4.530710 | AGTGACTACATACGGAGCAAAA | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
228 | 233 | 4.242475 | CAAGTGACTACATACGGAGCAAA | 58.758 | 43.478 | 0.00 | 0.00 | 0.00 | 3.68 |
229 | 234 | 3.257375 | ACAAGTGACTACATACGGAGCAA | 59.743 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
230 | 235 | 2.823747 | ACAAGTGACTACATACGGAGCA | 59.176 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
231 | 236 | 3.505464 | ACAAGTGACTACATACGGAGC | 57.495 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
232 | 237 | 5.055642 | TCAACAAGTGACTACATACGGAG | 57.944 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
233 | 238 | 5.456548 | TTCAACAAGTGACTACATACGGA | 57.543 | 39.130 | 0.00 | 0.00 | 35.39 | 4.69 |
234 | 239 | 6.590292 | AGATTTCAACAAGTGACTACATACGG | 59.410 | 38.462 | 0.00 | 0.00 | 35.39 | 4.02 |
235 | 240 | 7.582435 | AGATTTCAACAAGTGACTACATACG | 57.418 | 36.000 | 0.00 | 0.00 | 35.39 | 3.06 |
238 | 243 | 9.778741 | TCTAAAGATTTCAACAAGTGACTACAT | 57.221 | 29.630 | 0.00 | 0.00 | 35.39 | 2.29 |
239 | 244 | 9.607988 | TTCTAAAGATTTCAACAAGTGACTACA | 57.392 | 29.630 | 0.00 | 0.00 | 35.39 | 2.74 |
242 | 247 | 9.396022 | TCTTTCTAAAGATTTCAACAAGTGACT | 57.604 | 29.630 | 1.00 | 0.00 | 39.95 | 3.41 |
243 | 248 | 9.439537 | GTCTTTCTAAAGATTTCAACAAGTGAC | 57.560 | 33.333 | 8.31 | 0.00 | 45.83 | 3.67 |
244 | 249 | 9.173021 | TGTCTTTCTAAAGATTTCAACAAGTGA | 57.827 | 29.630 | 8.31 | 0.00 | 45.83 | 3.41 |
245 | 250 | 9.787532 | TTGTCTTTCTAAAGATTTCAACAAGTG | 57.212 | 29.630 | 8.31 | 0.00 | 45.83 | 3.16 |
260 | 265 | 9.947433 | TCCGTTCCTAAATATTTGTCTTTCTAA | 57.053 | 29.630 | 11.05 | 0.00 | 0.00 | 2.10 |
261 | 266 | 9.595823 | CTCCGTTCCTAAATATTTGTCTTTCTA | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.10 |
262 | 267 | 7.553044 | CCTCCGTTCCTAAATATTTGTCTTTCT | 59.447 | 37.037 | 11.05 | 0.00 | 0.00 | 2.52 |
263 | 268 | 7.201705 | CCCTCCGTTCCTAAATATTTGTCTTTC | 60.202 | 40.741 | 11.05 | 0.00 | 0.00 | 2.62 |
264 | 269 | 6.602009 | CCCTCCGTTCCTAAATATTTGTCTTT | 59.398 | 38.462 | 11.05 | 0.00 | 0.00 | 2.52 |
265 | 270 | 6.069847 | TCCCTCCGTTCCTAAATATTTGTCTT | 60.070 | 38.462 | 11.05 | 0.00 | 0.00 | 3.01 |
266 | 271 | 5.427481 | TCCCTCCGTTCCTAAATATTTGTCT | 59.573 | 40.000 | 11.05 | 0.00 | 0.00 | 3.41 |
267 | 272 | 5.677567 | TCCCTCCGTTCCTAAATATTTGTC | 58.322 | 41.667 | 11.05 | 0.00 | 0.00 | 3.18 |
268 | 273 | 5.191124 | ACTCCCTCCGTTCCTAAATATTTGT | 59.809 | 40.000 | 11.05 | 0.00 | 0.00 | 2.83 |
269 | 274 | 5.681639 | ACTCCCTCCGTTCCTAAATATTTG | 58.318 | 41.667 | 11.05 | 1.40 | 0.00 | 2.32 |
270 | 275 | 5.970501 | ACTCCCTCCGTTCCTAAATATTT | 57.029 | 39.130 | 5.89 | 5.89 | 0.00 | 1.40 |
271 | 276 | 5.901276 | TGTACTCCCTCCGTTCCTAAATATT | 59.099 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
272 | 277 | 5.461327 | TGTACTCCCTCCGTTCCTAAATAT | 58.539 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
273 | 278 | 4.870636 | TGTACTCCCTCCGTTCCTAAATA | 58.129 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
274 | 279 | 3.716431 | TGTACTCCCTCCGTTCCTAAAT | 58.284 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
275 | 280 | 3.173953 | TGTACTCCCTCCGTTCCTAAA | 57.826 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
276 | 281 | 2.905415 | TGTACTCCCTCCGTTCCTAA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
277 | 282 | 3.028850 | CAATGTACTCCCTCCGTTCCTA | 58.971 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
278 | 283 | 1.831736 | CAATGTACTCCCTCCGTTCCT | 59.168 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
279 | 284 | 1.553704 | ACAATGTACTCCCTCCGTTCC | 59.446 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
280 | 285 | 3.181478 | CCTACAATGTACTCCCTCCGTTC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 3.95 |
281 | 286 | 2.764572 | CCTACAATGTACTCCCTCCGTT | 59.235 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
282 | 287 | 2.292061 | ACCTACAATGTACTCCCTCCGT | 60.292 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
283 | 288 | 2.100916 | CACCTACAATGTACTCCCTCCG | 59.899 | 54.545 | 0.00 | 0.00 | 0.00 | 4.63 |
284 | 289 | 3.105283 | ACACCTACAATGTACTCCCTCC | 58.895 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
285 | 290 | 3.181489 | CGACACCTACAATGTACTCCCTC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
286 | 291 | 2.758979 | CGACACCTACAATGTACTCCCT | 59.241 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
287 | 292 | 2.756760 | TCGACACCTACAATGTACTCCC | 59.243 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
288 | 293 | 4.445452 | TTCGACACCTACAATGTACTCC | 57.555 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
289 | 294 | 6.643770 | TCTTTTTCGACACCTACAATGTACTC | 59.356 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
290 | 295 | 6.518493 | TCTTTTTCGACACCTACAATGTACT | 58.482 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
291 | 296 | 6.774354 | TCTTTTTCGACACCTACAATGTAC | 57.226 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
292 | 297 | 6.073440 | GCTTCTTTTTCGACACCTACAATGTA | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
317 | 322 | 7.829725 | TCATGATAAAGATTTCAACCACCTTG | 58.170 | 34.615 | 0.00 | 0.00 | 0.00 | 3.61 |
339 | 344 | 6.075099 | CGAAAGTGCAATTTTACGTGTTTCAT | 60.075 | 34.615 | 14.04 | 0.00 | 0.00 | 2.57 |
357 | 362 | 1.081242 | GTGTGGGCATGCGAAAGTG | 60.081 | 57.895 | 12.44 | 0.00 | 0.00 | 3.16 |
386 | 397 | 7.335924 | TGTTTCTTCGATTTATTTAGGGGAGTG | 59.664 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
387 | 398 | 7.399634 | TGTTTCTTCGATTTATTTAGGGGAGT | 58.600 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
404 | 415 | 7.804614 | TTGTGTTGTTGTGTAATGTTTCTTC | 57.195 | 32.000 | 0.00 | 0.00 | 0.00 | 2.87 |
472 | 483 | 7.428826 | AGAAGCTACAATTTTTGGACTGAAAG | 58.571 | 34.615 | 0.00 | 0.00 | 35.52 | 2.62 |
473 | 484 | 7.346751 | AGAAGCTACAATTTTTGGACTGAAA | 57.653 | 32.000 | 0.00 | 0.00 | 34.12 | 2.69 |
474 | 485 | 6.959639 | AGAAGCTACAATTTTTGGACTGAA | 57.040 | 33.333 | 0.00 | 0.00 | 34.12 | 3.02 |
475 | 486 | 7.224297 | ACTAGAAGCTACAATTTTTGGACTGA | 58.776 | 34.615 | 0.00 | 0.00 | 34.12 | 3.41 |
476 | 487 | 7.440523 | ACTAGAAGCTACAATTTTTGGACTG | 57.559 | 36.000 | 0.00 | 0.00 | 34.12 | 3.51 |
477 | 488 | 8.376270 | AGTACTAGAAGCTACAATTTTTGGACT | 58.624 | 33.333 | 0.00 | 0.00 | 34.12 | 3.85 |
478 | 489 | 8.549338 | AGTACTAGAAGCTACAATTTTTGGAC | 57.451 | 34.615 | 0.00 | 0.00 | 34.12 | 4.02 |
488 | 499 | 8.684520 | GGACAAAGATAAGTACTAGAAGCTACA | 58.315 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
489 | 500 | 7.856894 | CGGACAAAGATAAGTACTAGAAGCTAC | 59.143 | 40.741 | 0.00 | 0.00 | 0.00 | 3.58 |
502 | 513 | 1.083489 | TTGCGGCGGACAAAGATAAG | 58.917 | 50.000 | 9.78 | 0.00 | 0.00 | 1.73 |
552 | 563 | 1.795872 | CGTTGATGGAACTGCGTACAA | 59.204 | 47.619 | 0.00 | 0.00 | 31.70 | 2.41 |
558 | 569 | 1.461127 | GTCAGTCGTTGATGGAACTGC | 59.539 | 52.381 | 0.00 | 0.00 | 38.29 | 4.40 |
599 | 610 | 1.375523 | GCAGGTACCACTCCGTTGG | 60.376 | 63.158 | 15.94 | 0.00 | 43.04 | 3.77 |
603 | 614 | 1.079127 | CCAAGCAGGTACCACTCCG | 60.079 | 63.158 | 15.94 | 6.09 | 0.00 | 4.63 |
714 | 725 | 3.423539 | AAGAAGCAATGGCAGTCACTA | 57.576 | 42.857 | 0.00 | 0.00 | 44.61 | 2.74 |
735 | 772 | 3.798337 | GGAACGAGCGTAATTAATCGGAA | 59.202 | 43.478 | 16.02 | 0.00 | 39.42 | 4.30 |
744 | 781 | 0.108992 | TGCGAAGGAACGAGCGTAAT | 60.109 | 50.000 | 0.00 | 0.00 | 35.09 | 1.89 |
795 | 1053 | 7.982354 | AGTTTCTCCATTTCTCTTATTAGGACG | 59.018 | 37.037 | 0.00 | 0.00 | 0.00 | 4.79 |
1044 | 1302 | 1.595109 | CACAACTGCAGGTGCTCGA | 60.595 | 57.895 | 31.50 | 0.00 | 42.66 | 4.04 |
1051 | 1309 | 1.602311 | AAGCTTCTCACAACTGCAGG | 58.398 | 50.000 | 19.93 | 3.21 | 0.00 | 4.85 |
1251 | 1509 | 3.523972 | AGAAGAGTTTAGGGGGATTGGTC | 59.476 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
1328 | 1586 | 2.555325 | CACAAGTTCACTGACATGCCAT | 59.445 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
1419 | 1677 | 3.054508 | TCCATGACATGTTGTAGGCATCA | 60.055 | 43.478 | 14.26 | 0.00 | 0.00 | 3.07 |
1628 | 1886 | 9.394767 | TGTGAACTGTTAATGCAGAATATGTAT | 57.605 | 29.630 | 0.00 | 0.00 | 39.62 | 2.29 |
1656 | 1914 | 3.568430 | GGGGAACAAATTGAAACTCGAGT | 59.432 | 43.478 | 13.58 | 13.58 | 0.00 | 4.18 |
1876 | 2134 | 3.614092 | CTTCATAACCACTGATGCACCT | 58.386 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
2006 | 2265 | 8.289939 | TCGTGGACTTAGTTTCATAGAACTAT | 57.710 | 34.615 | 0.00 | 0.00 | 40.66 | 2.12 |
2024 | 2283 | 7.908601 | GGTATTGTTTCTTTGATTATCGTGGAC | 59.091 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
2129 | 2388 | 4.929479 | TGTTGGTCAAGGCCTTGTAATAT | 58.071 | 39.130 | 37.97 | 5.06 | 41.16 | 1.28 |
2241 | 2502 | 9.308318 | GTTGTCAGTTAATTTGTGGTTTATGTT | 57.692 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
2401 | 2663 | 5.365619 | CCAGTAGTGTCACAGGTAAAAACT | 58.634 | 41.667 | 5.62 | 0.00 | 0.00 | 2.66 |
2402 | 2664 | 4.514066 | CCCAGTAGTGTCACAGGTAAAAAC | 59.486 | 45.833 | 5.62 | 0.00 | 0.00 | 2.43 |
2469 | 2856 | 7.454066 | TCATGAATCTTGATGGATAGCTAGTCT | 59.546 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
2501 | 2888 | 3.837213 | AGAACAAATCAATGGCTCACG | 57.163 | 42.857 | 0.00 | 0.00 | 0.00 | 4.35 |
2597 | 2984 | 2.647784 | GTGTTGGCACGTGTTTGTG | 58.352 | 52.632 | 18.38 | 0.00 | 42.81 | 3.33 |
2615 | 3002 | 1.472878 | TCCAGAAAGATCGTGGAGTCG | 59.527 | 52.381 | 5.37 | 0.00 | 35.36 | 4.18 |
2649 | 3043 | 1.141858 | TGTGGTGTGTGGTAGCATTCA | 59.858 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
2677 | 3071 | 7.814107 | TCCAAAATAGCAGACTTTAATTTGCAG | 59.186 | 33.333 | 0.78 | 0.00 | 38.97 | 4.41 |
2750 | 3148 | 8.317679 | AGTGAGTCTTTGTTTGCTAGATATTCT | 58.682 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2789 | 3187 | 4.078537 | TGTTCACCCATCGATTTGACAAT | 58.921 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
2839 | 3399 | 7.741652 | GTGCTTTGATTTGTAAAAGCTTAATGC | 59.258 | 33.333 | 17.92 | 1.74 | 45.59 | 3.56 |
2969 | 3530 | 4.917998 | TGCTATGCGCGTATTTTTCAAAAA | 59.082 | 33.333 | 16.54 | 0.00 | 43.27 | 1.94 |
2970 | 3531 | 4.322274 | GTGCTATGCGCGTATTTTTCAAAA | 59.678 | 37.500 | 16.54 | 0.00 | 43.27 | 2.44 |
2971 | 3532 | 3.849145 | GTGCTATGCGCGTATTTTTCAAA | 59.151 | 39.130 | 16.54 | 0.00 | 43.27 | 2.69 |
2972 | 3533 | 3.421741 | GTGCTATGCGCGTATTTTTCAA | 58.578 | 40.909 | 16.54 | 0.00 | 43.27 | 2.69 |
3323 | 3888 | 1.825105 | ATCATATGACCAGTGGGGCT | 58.175 | 50.000 | 15.21 | 0.00 | 45.45 | 5.19 |
3701 | 4267 | 6.128172 | GCTTGTACATTAACTCAATCACAGCT | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 4.24 |
3927 | 4493 | 6.748658 | TCGTTTTACTCCGTATGTAGTTCATG | 59.251 | 38.462 | 0.00 | 0.00 | 37.91 | 3.07 |
3940 | 4506 | 5.285607 | GTGTAGATTCACTCGTTTTACTCCG | 59.714 | 44.000 | 0.00 | 0.00 | 35.68 | 4.63 |
3950 | 4516 | 7.303261 | TGTAGTTTACAGTGTAGATTCACTCG | 58.697 | 38.462 | 2.68 | 0.00 | 45.37 | 4.18 |
4017 | 4583 | 8.251383 | TCCCTCTGTTCCTAAATATAAGTCTG | 57.749 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
4036 | 4602 | 8.734763 | TCAATAGGACTAGTTTATACTCCCTCT | 58.265 | 37.037 | 0.00 | 0.00 | 35.78 | 3.69 |
4367 | 4934 | 5.052693 | AGCCATTATTATGCCAGAGAACA | 57.947 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
4430 | 4997 | 5.043903 | ACACTCGACTCATATTTGATTCCG | 58.956 | 41.667 | 0.00 | 0.00 | 29.96 | 4.30 |
4649 | 5216 | 3.945285 | CACACCTGTATCCAACATAACCC | 59.055 | 47.826 | 0.00 | 0.00 | 37.50 | 4.11 |
4710 | 5277 | 2.041216 | GGGGAGTACCTTCACAACCATT | 59.959 | 50.000 | 0.00 | 0.00 | 40.03 | 3.16 |
4984 | 5551 | 0.984230 | TCTTTTGAGGGGACGAGCAT | 59.016 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
4987 | 5554 | 3.489398 | CGAGTATCTTTTGAGGGGACGAG | 60.489 | 52.174 | 0.00 | 0.00 | 0.00 | 4.18 |
5722 | 6291 | 9.353531 | AACATGAGTTTGATCAATGGGGACAAC | 62.354 | 40.741 | 9.40 | 1.69 | 38.39 | 3.32 |
6130 | 9116 | 2.131183 | GCATCTCATACTCAACGGCTC | 58.869 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
6175 | 9161 | 1.001068 | GATAAGTTCTCCCGGCTAGGC | 59.999 | 57.143 | 6.15 | 6.15 | 39.21 | 3.93 |
6221 | 9207 | 1.141455 | TGCTCCAAGCTATAGCATGCA | 59.859 | 47.619 | 26.07 | 21.74 | 42.97 | 3.96 |
6288 | 9274 | 2.435372 | TGGCAAAAACACTGGAGAGT | 57.565 | 45.000 | 0.00 | 0.00 | 0.00 | 3.24 |
6294 | 9280 | 2.903798 | ACAACCATGGCAAAAACACTG | 58.096 | 42.857 | 13.04 | 0.00 | 0.00 | 3.66 |
6334 | 9320 | 4.489306 | AGGGCCTTACAAGATACAGTTC | 57.511 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
6383 | 9398 | 8.934697 | AGAAAAGGATGGTACTGCATAATAGTA | 58.065 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
6384 | 9399 | 7.806180 | AGAAAAGGATGGTACTGCATAATAGT | 58.194 | 34.615 | 0.00 | 0.00 | 0.00 | 2.12 |
6385 | 9400 | 8.682936 | AAGAAAAGGATGGTACTGCATAATAG | 57.317 | 34.615 | 0.00 | 0.00 | 0.00 | 1.73 |
6403 | 9418 | 9.774742 | GGTACTGTATATGCTCAAAAAGAAAAG | 57.225 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
6630 | 9648 | 5.356882 | TGACTAAAGGAAGATGCAAAACG | 57.643 | 39.130 | 0.00 | 0.00 | 0.00 | 3.60 |
6684 | 9702 | 3.317430 | CCCTACACCGTATGTAACCTCTC | 59.683 | 52.174 | 0.00 | 0.00 | 43.35 | 3.20 |
6686 | 9704 | 3.026694 | ACCCTACACCGTATGTAACCTC | 58.973 | 50.000 | 0.00 | 0.00 | 43.35 | 3.85 |
6714 | 9732 | 1.380524 | CTTGATTCAGCAGAGCCAGG | 58.619 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
6785 | 9810 | 0.617413 | ACACCTCAGGGATGCTTCTG | 59.383 | 55.000 | 0.00 | 0.00 | 36.25 | 3.02 |
6786 | 9811 | 2.114616 | CTACACCTCAGGGATGCTTCT | 58.885 | 52.381 | 0.00 | 0.00 | 36.25 | 2.85 |
6806 | 9831 | 4.402155 | CCTCATATATCTCAGTGGGCTCTC | 59.598 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.