Multiple sequence alignment - TraesCS7D01G418100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G418100 chr7D 100.000 5269 0 0 1 5269 537665910 537671178 0.000000e+00 9731.0
1 TraesCS7D01G418100 chr7D 93.415 1139 74 1 3130 4267 537667905 537669043 0.000000e+00 1687.0
2 TraesCS7D01G418100 chr7D 93.415 1139 74 1 1996 3134 537669039 537670176 0.000000e+00 1687.0
3 TraesCS7D01G418100 chr7D 80.790 911 157 12 3419 4320 17338858 17339759 0.000000e+00 697.0
4 TraesCS7D01G418100 chr7D 81.103 852 139 13 2288 3127 17338861 17339702 0.000000e+00 662.0
5 TraesCS7D01G418100 chr7D 77.608 1045 210 18 1875 2914 17344779 17345804 3.490000e-171 612.0
6 TraesCS7D01G418100 chr7D 77.273 902 177 23 3154 4048 17344924 17345804 6.090000e-139 505.0
7 TraesCS7D01G418100 chr7D 80.640 656 115 8 3260 3906 17207121 17207773 1.020000e-136 497.0
8 TraesCS7D01G418100 chr7D 79.370 698 128 13 2017 2700 17214787 17215482 1.330000e-130 477.0
9 TraesCS7D01G418100 chr7B 93.308 4289 222 36 1000 5269 580132775 580137017 0.000000e+00 6270.0
10 TraesCS7D01G418100 chr7B 93.591 1139 72 1 3130 4267 580133755 580134893 0.000000e+00 1698.0
11 TraesCS7D01G418100 chr7B 93.152 1139 77 1 1996 3134 580134889 580136026 0.000000e+00 1670.0
12 TraesCS7D01G418100 chr7B 94.545 55 3 0 948 1002 580132638 580132692 9.400000e-13 86.1
13 TraesCS7D01G418100 chr7A 93.947 3899 183 27 1001 4878 618675442 618679308 0.000000e+00 5843.0
14 TraesCS7D01G418100 chr7A 94.585 2567 112 11 1001 3560 619020626 619023172 0.000000e+00 3945.0
15 TraesCS7D01G418100 chr7A 96.734 1194 32 5 3611 4802 619023168 619024356 0.000000e+00 1982.0
16 TraesCS7D01G418100 chr7A 93.415 1139 73 2 1996 3134 618677554 618678690 0.000000e+00 1687.0
17 TraesCS7D01G418100 chr7A 93.327 1139 75 1 3130 4267 618676420 618677558 0.000000e+00 1681.0
18 TraesCS7D01G418100 chr7A 93.152 1139 77 1 3130 4267 619021608 619022746 0.000000e+00 1670.0
19 TraesCS7D01G418100 chr7A 94.985 658 32 1 2477 3134 619023168 619023824 0.000000e+00 1031.0
20 TraesCS7D01G418100 chr7A 91.647 431 36 0 1996 2426 619022742 619023172 9.770000e-167 597.0
21 TraesCS7D01G418100 chr7A 86.076 237 31 2 4978 5214 618679483 618679717 2.440000e-63 254.0
22 TraesCS7D01G418100 chr7A 91.429 175 12 1 5095 5269 619024359 619024530 2.450000e-58 237.0
23 TraesCS7D01G418100 chr7A 84.375 96 15 0 819 914 677435519 677435424 1.560000e-15 95.3
24 TraesCS7D01G418100 chr7A 93.548 62 4 0 941 1002 618675296 618675357 5.620000e-15 93.5
25 TraesCS7D01G418100 chr7A 97.500 40 1 0 1 40 618675084 618675123 9.470000e-08 69.4
26 TraesCS7D01G418100 chr7A 97.436 39 1 0 4926 4964 618679321 618679359 3.410000e-07 67.6
27 TraesCS7D01G418100 chr4A 80.972 1214 200 18 1928 3127 716974693 716973497 0.000000e+00 933.0
28 TraesCS7D01G418100 chr4A 79.864 1321 225 28 3136 4441 716974619 716973325 0.000000e+00 928.0
29 TraesCS7D01G418100 chr4A 80.066 903 155 20 2090 2975 717045564 717044670 0.000000e+00 647.0
30 TraesCS7D01G418100 chr4A 78.484 976 180 22 3154 4109 717051139 717050174 3.490000e-171 612.0
31 TraesCS7D01G418100 chr4A 78.801 901 166 20 3226 4109 717045562 717044670 2.730000e-162 582.0
32 TraesCS7D01G418100 chr4A 79.762 84 17 0 822 905 668375693 668375776 1.580000e-05 62.1
33 TraesCS7D01G418100 chr6A 87.097 62 5 2 451 512 20238604 20238546 3.410000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G418100 chr7D 537665910 537671178 5268 False 4368.333333 9731 95.610000 1 5269 3 chr7D.!!$F5 5268
1 TraesCS7D01G418100 chr7D 17338858 17339759 901 False 679.500000 697 80.946500 2288 4320 2 chr7D.!!$F3 2032
2 TraesCS7D01G418100 chr7D 17344779 17345804 1025 False 558.500000 612 77.440500 1875 4048 2 chr7D.!!$F4 2173
3 TraesCS7D01G418100 chr7D 17207121 17207773 652 False 497.000000 497 80.640000 3260 3906 1 chr7D.!!$F1 646
4 TraesCS7D01G418100 chr7D 17214787 17215482 695 False 477.000000 477 79.370000 2017 2700 1 chr7D.!!$F2 683
5 TraesCS7D01G418100 chr7B 580132638 580137017 4379 False 2431.025000 6270 93.649000 948 5269 4 chr7B.!!$F1 4321
6 TraesCS7D01G418100 chr7A 619020626 619024530 3904 False 1577.000000 3945 93.755333 1001 5269 6 chr7A.!!$F2 4268
7 TraesCS7D01G418100 chr7A 618675084 618679717 4633 False 1385.071429 5843 93.607000 1 5214 7 chr7A.!!$F1 5213
8 TraesCS7D01G418100 chr4A 716973325 716974693 1368 True 930.500000 933 80.418000 1928 4441 2 chr4A.!!$R2 2513
9 TraesCS7D01G418100 chr4A 717044670 717045564 894 True 614.500000 647 79.433500 2090 4109 2 chr4A.!!$R3 2019
10 TraesCS7D01G418100 chr4A 717050174 717051139 965 True 612.000000 612 78.484000 3154 4109 1 chr4A.!!$R1 955

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 377 0.031994 GCAAAAGAACACGCCCATGT 59.968 50.0 0.00 0.0 0.00 3.21 F
415 416 0.177836 CAGTGTGGCCCATATCGACA 59.822 55.0 0.00 0.0 0.00 4.35 F
951 952 0.539986 TTGGGACGGAGGCTACAATC 59.460 55.0 0.00 0.0 0.00 2.67 F
2106 2346 0.817634 TGCGTTTGCTAGCACCTGTT 60.818 50.0 19.17 0.0 43.34 3.16 F
2586 2833 0.169672 CAAGCTTTCTGATGCACGGG 59.830 55.0 0.00 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 1823 0.110823 GACGAACGCTGTCGCATTTT 60.111 50.0 5.88 0.0 45.00 1.82 R
1601 1832 0.865111 TGAAATGGTGACGAACGCTG 59.135 50.0 0.00 0.0 0.00 5.18 R
2451 2698 0.400594 AGGGTGCCACCAAAGTAGAC 59.599 55.0 17.22 0.0 41.02 2.59 R
3320 3567 0.893727 GGGCTTGGACACGGACATTT 60.894 55.0 0.00 0.0 0.00 2.32 R
4273 5632 0.698238 AAGCTGTAGTTGCCCCATCA 59.302 50.0 0.00 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 5.365619 ACTAATAAGAGGTAATTGCACCCG 58.634 41.667 0.00 0.00 39.62 5.28
59 60 3.926058 ATAAGAGGTAATTGCACCCGT 57.074 42.857 0.00 0.00 39.62 5.28
60 61 1.821216 AAGAGGTAATTGCACCCGTG 58.179 50.000 0.00 0.00 39.62 4.94
61 62 0.035439 AGAGGTAATTGCACCCGTGG 60.035 55.000 0.00 0.00 39.62 4.94
62 63 0.322187 GAGGTAATTGCACCCGTGGT 60.322 55.000 0.00 0.00 39.62 4.16
72 73 3.813080 ACCCGTGGTGCTTAAACTT 57.187 47.368 0.00 0.00 32.98 2.66
73 74 1.314730 ACCCGTGGTGCTTAAACTTG 58.685 50.000 0.00 0.00 32.98 3.16
74 75 0.039527 CCCGTGGTGCTTAAACTTGC 60.040 55.000 0.00 0.00 0.00 4.01
75 76 0.039527 CCGTGGTGCTTAAACTTGCC 60.040 55.000 0.00 0.00 0.00 4.52
76 77 0.665835 CGTGGTGCTTAAACTTGCCA 59.334 50.000 0.00 0.00 0.00 4.92
77 78 1.599419 CGTGGTGCTTAAACTTGCCAC 60.599 52.381 0.00 0.00 41.92 5.01
78 79 1.036707 TGGTGCTTAAACTTGCCACC 58.963 50.000 0.00 0.00 33.88 4.61
79 80 1.036707 GGTGCTTAAACTTGCCACCA 58.963 50.000 3.43 0.00 33.66 4.17
80 81 1.410882 GGTGCTTAAACTTGCCACCAA 59.589 47.619 3.43 0.00 33.66 3.67
81 82 2.037121 GGTGCTTAAACTTGCCACCAAT 59.963 45.455 3.43 0.00 33.66 3.16
82 83 3.257127 GGTGCTTAAACTTGCCACCAATA 59.743 43.478 3.43 0.00 33.66 1.90
83 84 4.081697 GGTGCTTAAACTTGCCACCAATAT 60.082 41.667 3.43 0.00 33.66 1.28
84 85 5.478407 GTGCTTAAACTTGCCACCAATATT 58.522 37.500 0.00 0.00 0.00 1.28
85 86 5.931724 GTGCTTAAACTTGCCACCAATATTT 59.068 36.000 0.00 0.00 0.00 1.40
86 87 7.093992 GTGCTTAAACTTGCCACCAATATTTA 58.906 34.615 0.00 0.00 0.00 1.40
87 88 7.062956 GTGCTTAAACTTGCCACCAATATTTAC 59.937 37.037 0.00 0.00 0.00 2.01
88 89 7.039363 TGCTTAAACTTGCCACCAATATTTACT 60.039 33.333 0.00 0.00 0.00 2.24
89 90 7.817478 GCTTAAACTTGCCACCAATATTTACTT 59.183 33.333 0.00 0.00 0.00 2.24
90 91 9.705290 CTTAAACTTGCCACCAATATTTACTTT 57.295 29.630 0.00 0.00 0.00 2.66
93 94 8.417273 AACTTGCCACCAATATTTACTTTAGT 57.583 30.769 0.00 0.00 0.00 2.24
94 95 9.523168 AACTTGCCACCAATATTTACTTTAGTA 57.477 29.630 0.00 0.00 0.00 1.82
95 96 9.695155 ACTTGCCACCAATATTTACTTTAGTAT 57.305 29.630 0.00 0.00 0.00 2.12
97 98 9.914834 TTGCCACCAATATTTACTTTAGTATCT 57.085 29.630 0.00 0.00 0.00 1.98
98 99 9.337396 TGCCACCAATATTTACTTTAGTATCTG 57.663 33.333 0.00 0.00 0.00 2.90
99 100 9.555727 GCCACCAATATTTACTTTAGTATCTGA 57.444 33.333 0.00 0.00 0.00 3.27
123 124 9.883142 TGAACTTGAAAAATAAATTGAACTGGT 57.117 25.926 0.00 0.00 0.00 4.00
137 138 8.485578 AATTGAACTGGTTATAAAACTTGGGA 57.514 30.769 0.00 0.00 35.81 4.37
138 139 6.887626 TGAACTGGTTATAAAACTTGGGAC 57.112 37.500 0.00 0.00 35.81 4.46
139 140 5.470777 TGAACTGGTTATAAAACTTGGGACG 59.529 40.000 0.00 0.00 35.81 4.79
140 141 5.231702 ACTGGTTATAAAACTTGGGACGA 57.768 39.130 0.00 0.00 35.81 4.20
141 142 5.243207 ACTGGTTATAAAACTTGGGACGAG 58.757 41.667 0.00 0.00 35.81 4.18
142 143 4.004982 TGGTTATAAAACTTGGGACGAGC 58.995 43.478 0.00 0.00 35.81 5.03
143 144 3.063045 GGTTATAAAACTTGGGACGAGCG 59.937 47.826 0.00 0.00 35.81 5.03
144 145 1.084289 ATAAAACTTGGGACGAGCGC 58.916 50.000 0.00 0.00 0.00 5.92
145 146 1.286354 TAAAACTTGGGACGAGCGCG 61.286 55.000 8.75 8.75 44.79 6.86
158 159 3.420943 GCGCGGTGCTAATTCCAT 58.579 55.556 8.83 0.00 41.73 3.41
159 160 1.727467 GCGCGGTGCTAATTCCATT 59.273 52.632 8.83 0.00 41.73 3.16
160 161 0.941542 GCGCGGTGCTAATTCCATTA 59.058 50.000 8.83 0.00 41.73 1.90
161 162 1.069906 GCGCGGTGCTAATTCCATTAG 60.070 52.381 8.83 0.00 43.94 1.73
176 177 4.924305 CCATTAGCATGGCACTGTATTT 57.076 40.909 0.00 0.00 43.95 1.40
177 178 5.266733 CCATTAGCATGGCACTGTATTTT 57.733 39.130 0.00 0.00 43.95 1.82
178 179 5.663456 CCATTAGCATGGCACTGTATTTTT 58.337 37.500 0.00 0.00 43.95 1.94
195 196 2.554370 TTTTACTTAGCGTGCCACCT 57.446 45.000 0.00 0.00 0.00 4.00
196 197 2.088950 TTTACTTAGCGTGCCACCTC 57.911 50.000 0.00 0.00 0.00 3.85
197 198 0.970640 TTACTTAGCGTGCCACCTCA 59.029 50.000 0.00 0.00 0.00 3.86
198 199 1.191535 TACTTAGCGTGCCACCTCAT 58.808 50.000 0.00 0.00 0.00 2.90
199 200 1.191535 ACTTAGCGTGCCACCTCATA 58.808 50.000 0.00 0.00 0.00 2.15
200 201 1.137086 ACTTAGCGTGCCACCTCATAG 59.863 52.381 0.00 0.00 0.00 2.23
201 202 0.179084 TTAGCGTGCCACCTCATAGC 60.179 55.000 0.00 0.00 0.00 2.97
202 203 1.326951 TAGCGTGCCACCTCATAGCA 61.327 55.000 0.00 0.00 0.00 3.49
203 204 1.524621 GCGTGCCACCTCATAGCAT 60.525 57.895 0.00 0.00 39.04 3.79
204 205 0.249868 GCGTGCCACCTCATAGCATA 60.250 55.000 0.00 0.00 39.04 3.14
205 206 1.609061 GCGTGCCACCTCATAGCATAT 60.609 52.381 0.00 0.00 39.04 1.78
206 207 2.071540 CGTGCCACCTCATAGCATATG 58.928 52.381 0.00 0.00 39.04 1.78
207 208 2.548707 CGTGCCACCTCATAGCATATGT 60.549 50.000 4.29 0.00 39.04 2.29
208 209 3.070018 GTGCCACCTCATAGCATATGTC 58.930 50.000 4.29 0.00 39.04 3.06
209 210 2.974794 TGCCACCTCATAGCATATGTCT 59.025 45.455 4.29 4.86 0.00 3.41
210 211 3.007290 TGCCACCTCATAGCATATGTCTC 59.993 47.826 4.29 0.00 0.00 3.36
211 212 3.260380 GCCACCTCATAGCATATGTCTCT 59.740 47.826 4.29 0.00 0.00 3.10
212 213 4.464244 GCCACCTCATAGCATATGTCTCTA 59.536 45.833 4.29 0.00 0.00 2.43
213 214 5.128499 GCCACCTCATAGCATATGTCTCTAT 59.872 44.000 4.29 0.37 0.00 1.98
214 215 6.571605 CCACCTCATAGCATATGTCTCTATG 58.428 44.000 16.69 16.69 40.40 2.23
215 216 6.379417 CCACCTCATAGCATATGTCTCTATGA 59.621 42.308 20.93 20.93 43.53 2.15
216 217 7.257003 CACCTCATAGCATATGTCTCTATGAC 58.743 42.308 19.48 0.00 41.93 3.06
217 218 6.379703 ACCTCATAGCATATGTCTCTATGACC 59.620 42.308 19.48 0.00 41.93 4.02
218 219 6.183360 CCTCATAGCATATGTCTCTATGACCC 60.183 46.154 19.48 0.00 41.93 4.46
219 220 6.256053 TCATAGCATATGTCTCTATGACCCA 58.744 40.000 19.48 5.98 41.93 4.51
220 221 6.899631 TCATAGCATATGTCTCTATGACCCAT 59.100 38.462 19.48 0.00 41.93 4.00
221 222 5.417754 AGCATATGTCTCTATGACCCATG 57.582 43.478 4.29 0.00 44.75 3.66
222 223 4.224594 AGCATATGTCTCTATGACCCATGG 59.775 45.833 4.14 4.14 44.75 3.66
223 224 4.223700 GCATATGTCTCTATGACCCATGGA 59.776 45.833 15.22 0.00 44.75 3.41
224 225 5.104610 GCATATGTCTCTATGACCCATGGAT 60.105 44.000 15.22 0.00 44.75 3.41
225 226 6.580788 CATATGTCTCTATGACCCATGGATC 58.419 44.000 15.22 6.11 44.75 3.36
226 227 3.242867 TGTCTCTATGACCCATGGATCC 58.757 50.000 15.22 4.20 44.75 3.36
227 228 2.569404 GTCTCTATGACCCATGGATCCC 59.431 54.545 15.22 0.00 39.69 3.85
228 229 2.182088 TCTCTATGACCCATGGATCCCA 59.818 50.000 15.22 5.55 38.19 4.37
229 230 2.304180 CTCTATGACCCATGGATCCCAC 59.696 54.545 15.22 0.00 35.80 4.61
230 231 1.352352 CTATGACCCATGGATCCCACC 59.648 57.143 15.22 0.00 35.80 4.61
231 232 0.328842 ATGACCCATGGATCCCACCT 60.329 55.000 15.22 0.00 35.80 4.00
232 233 1.281199 TGACCCATGGATCCCACCTG 61.281 60.000 15.22 1.55 35.80 4.00
233 234 1.230281 ACCCATGGATCCCACCTGT 60.230 57.895 15.22 0.00 35.80 4.00
234 235 1.281925 ACCCATGGATCCCACCTGTC 61.282 60.000 15.22 0.00 35.80 3.51
235 236 1.281199 CCCATGGATCCCACCTGTCA 61.281 60.000 15.22 0.00 35.80 3.58
236 237 0.182061 CCATGGATCCCACCTGTCAG 59.818 60.000 5.56 0.00 35.80 3.51
237 238 0.182061 CATGGATCCCACCTGTCAGG 59.818 60.000 17.88 17.88 42.49 3.86
246 247 4.874521 CCTGTCAGGTCAGAGGGA 57.125 61.111 11.09 0.00 37.61 4.20
247 248 3.073228 CCTGTCAGGTCAGAGGGAA 57.927 57.895 11.09 0.00 37.61 3.97
248 249 0.901124 CCTGTCAGGTCAGAGGGAAG 59.099 60.000 11.09 0.00 37.61 3.46
249 250 1.551099 CCTGTCAGGTCAGAGGGAAGA 60.551 57.143 11.09 0.00 37.61 2.87
250 251 2.465813 CTGTCAGGTCAGAGGGAAGAT 58.534 52.381 0.00 0.00 37.61 2.40
251 252 2.836981 CTGTCAGGTCAGAGGGAAGATT 59.163 50.000 0.00 0.00 37.61 2.40
252 253 4.026744 CTGTCAGGTCAGAGGGAAGATTA 58.973 47.826 0.00 0.00 37.61 1.75
253 254 3.769844 TGTCAGGTCAGAGGGAAGATTAC 59.230 47.826 0.00 0.00 0.00 1.89
254 255 3.133183 GTCAGGTCAGAGGGAAGATTACC 59.867 52.174 0.00 0.00 0.00 2.85
255 256 3.107601 CAGGTCAGAGGGAAGATTACCA 58.892 50.000 0.00 0.00 31.71 3.25
256 257 3.713764 CAGGTCAGAGGGAAGATTACCAT 59.286 47.826 0.00 0.00 31.71 3.55
257 258 3.970640 AGGTCAGAGGGAAGATTACCATC 59.029 47.826 0.00 0.00 38.32 3.51
258 259 3.243907 GGTCAGAGGGAAGATTACCATCG 60.244 52.174 0.00 0.00 42.10 3.84
259 260 3.637229 GTCAGAGGGAAGATTACCATCGA 59.363 47.826 0.00 0.00 42.10 3.59
260 261 3.637229 TCAGAGGGAAGATTACCATCGAC 59.363 47.826 0.00 0.00 42.10 4.20
261 262 3.639094 CAGAGGGAAGATTACCATCGACT 59.361 47.826 0.00 0.00 42.10 4.18
262 263 3.639094 AGAGGGAAGATTACCATCGACTG 59.361 47.826 0.00 0.00 42.10 3.51
281 282 2.095461 TGGAACAGGAGATCTCACTCG 58.905 52.381 23.85 11.00 37.74 4.18
282 283 2.096248 GGAACAGGAGATCTCACTCGT 58.904 52.381 23.85 11.61 37.74 4.18
284 285 3.639162 CAGGAGATCTCACTCGTGC 57.361 57.895 23.85 5.00 42.71 5.34
285 286 0.248417 CAGGAGATCTCACTCGTGCG 60.248 60.000 23.85 3.68 42.71 5.34
286 287 0.393132 AGGAGATCTCACTCGTGCGA 60.393 55.000 23.85 0.00 37.74 5.10
287 288 0.248296 GGAGATCTCACTCGTGCGAC 60.248 60.000 23.85 0.00 37.74 5.19
288 289 0.730265 GAGATCTCACTCGTGCGACT 59.270 55.000 18.11 0.00 0.00 4.18
289 290 1.934525 GAGATCTCACTCGTGCGACTA 59.065 52.381 18.11 0.00 0.00 2.59
290 291 1.937223 AGATCTCACTCGTGCGACTAG 59.063 52.381 0.00 0.00 0.00 2.57
300 301 2.417936 GCGACTAGCTAGCACCCC 59.582 66.667 20.91 2.32 44.04 4.95
301 302 2.423898 GCGACTAGCTAGCACCCCA 61.424 63.158 20.91 0.00 44.04 4.96
302 303 1.956629 GCGACTAGCTAGCACCCCAA 61.957 60.000 20.91 0.00 44.04 4.12
303 304 0.179108 CGACTAGCTAGCACCCCAAC 60.179 60.000 20.91 0.65 0.00 3.77
304 305 1.196012 GACTAGCTAGCACCCCAACT 58.804 55.000 20.91 0.00 0.00 3.16
305 306 1.555533 GACTAGCTAGCACCCCAACTT 59.444 52.381 20.91 0.00 0.00 2.66
306 307 1.279271 ACTAGCTAGCACCCCAACTTG 59.721 52.381 20.91 0.00 0.00 3.16
307 308 0.035439 TAGCTAGCACCCCAACTTGC 60.035 55.000 18.83 0.00 39.16 4.01
308 309 1.603455 GCTAGCACCCCAACTTGCA 60.603 57.895 10.63 0.00 41.48 4.08
309 310 0.967380 GCTAGCACCCCAACTTGCAT 60.967 55.000 10.63 0.00 41.48 3.96
310 311 1.681780 GCTAGCACCCCAACTTGCATA 60.682 52.381 10.63 0.00 41.48 3.14
311 312 2.722094 CTAGCACCCCAACTTGCATAA 58.278 47.619 0.00 0.00 41.48 1.90
312 313 2.236489 AGCACCCCAACTTGCATAAT 57.764 45.000 0.00 0.00 41.48 1.28
313 314 1.826720 AGCACCCCAACTTGCATAATG 59.173 47.619 0.00 0.00 41.48 1.90
314 315 1.550072 GCACCCCAACTTGCATAATGT 59.450 47.619 0.00 0.00 38.68 2.71
315 316 2.674747 GCACCCCAACTTGCATAATGTG 60.675 50.000 0.00 0.00 38.68 3.21
326 327 1.667236 CATAATGTGCCTCGCAAGGA 58.333 50.000 0.00 0.00 46.67 3.36
327 328 2.224606 CATAATGTGCCTCGCAAGGAT 58.775 47.619 0.00 0.00 46.67 3.24
328 329 3.402110 CATAATGTGCCTCGCAAGGATA 58.598 45.455 0.00 0.00 46.67 2.59
329 330 1.668419 AATGTGCCTCGCAAGGATAC 58.332 50.000 0.00 0.00 46.67 2.24
330 331 0.541392 ATGTGCCTCGCAAGGATACA 59.459 50.000 0.00 0.00 46.67 2.29
331 332 0.541392 TGTGCCTCGCAAGGATACAT 59.459 50.000 0.00 0.00 46.67 2.29
332 333 1.760029 TGTGCCTCGCAAGGATACATA 59.240 47.619 0.00 0.00 46.67 2.29
333 334 2.368548 TGTGCCTCGCAAGGATACATAT 59.631 45.455 0.00 0.00 46.67 1.78
334 335 2.996621 GTGCCTCGCAAGGATACATATC 59.003 50.000 0.00 0.00 46.67 1.63
335 336 2.899900 TGCCTCGCAAGGATACATATCT 59.100 45.455 0.00 0.00 46.67 1.98
336 337 3.324846 TGCCTCGCAAGGATACATATCTT 59.675 43.478 0.00 0.00 46.67 2.40
337 338 4.202357 TGCCTCGCAAGGATACATATCTTT 60.202 41.667 0.00 0.00 46.67 2.52
338 339 4.757149 GCCTCGCAAGGATACATATCTTTT 59.243 41.667 0.00 0.00 46.67 2.27
339 340 5.932303 GCCTCGCAAGGATACATATCTTTTA 59.068 40.000 0.00 0.00 46.67 1.52
340 341 6.595716 GCCTCGCAAGGATACATATCTTTTAT 59.404 38.462 0.00 0.00 46.67 1.40
341 342 7.413438 GCCTCGCAAGGATACATATCTTTTATG 60.413 40.741 0.00 0.00 46.67 1.90
342 343 7.604164 CCTCGCAAGGATACATATCTTTTATGT 59.396 37.037 0.00 3.94 46.67 2.29
343 344 8.534333 TCGCAAGGATACATATCTTTTATGTC 57.466 34.615 1.74 0.00 37.37 3.06
344 345 8.367911 TCGCAAGGATACATATCTTTTATGTCT 58.632 33.333 1.74 0.00 37.37 3.41
345 346 8.993121 CGCAAGGATACATATCTTTTATGTCTT 58.007 33.333 1.74 0.00 38.84 3.01
358 359 7.349711 TCTTTTATGTCTTGTTAAGAACACGC 58.650 34.615 0.00 0.00 41.97 5.34
359 360 6.606234 TTTATGTCTTGTTAAGAACACGCA 57.394 33.333 0.00 0.00 41.97 5.24
360 361 6.606234 TTATGTCTTGTTAAGAACACGCAA 57.394 33.333 0.00 0.00 41.97 4.85
361 362 4.948608 TGTCTTGTTAAGAACACGCAAA 57.051 36.364 0.00 0.00 41.97 3.68
362 363 5.298197 TGTCTTGTTAAGAACACGCAAAA 57.702 34.783 0.00 0.00 41.97 2.44
363 364 5.328691 TGTCTTGTTAAGAACACGCAAAAG 58.671 37.500 0.00 0.00 41.97 2.27
364 365 5.122554 TGTCTTGTTAAGAACACGCAAAAGA 59.877 36.000 0.00 0.00 41.97 2.52
365 366 6.025280 GTCTTGTTAAGAACACGCAAAAGAA 58.975 36.000 0.00 0.00 41.97 2.52
366 367 6.021704 GTCTTGTTAAGAACACGCAAAAGAAC 60.022 38.462 0.00 0.00 41.97 3.01
367 368 5.298197 TGTTAAGAACACGCAAAAGAACA 57.702 34.783 0.00 0.00 36.25 3.18
368 369 5.090083 TGTTAAGAACACGCAAAAGAACAC 58.910 37.500 0.00 0.00 36.25 3.32
369 370 2.452006 AGAACACGCAAAAGAACACG 57.548 45.000 0.00 0.00 0.00 4.49
370 371 0.837605 GAACACGCAAAAGAACACGC 59.162 50.000 0.00 0.00 0.00 5.34
371 372 0.524604 AACACGCAAAAGAACACGCC 60.525 50.000 0.00 0.00 0.00 5.68
372 373 1.657181 CACGCAAAAGAACACGCCC 60.657 57.895 0.00 0.00 0.00 6.13
373 374 2.115911 ACGCAAAAGAACACGCCCA 61.116 52.632 0.00 0.00 0.00 5.36
374 375 1.285641 CGCAAAAGAACACGCCCAT 59.714 52.632 0.00 0.00 0.00 4.00
375 376 1.003262 CGCAAAAGAACACGCCCATG 61.003 55.000 0.00 0.00 0.00 3.66
376 377 0.031994 GCAAAAGAACACGCCCATGT 59.968 50.000 0.00 0.00 0.00 3.21
377 378 1.268352 GCAAAAGAACACGCCCATGTA 59.732 47.619 0.00 0.00 30.75 2.29
378 379 2.668279 GCAAAAGAACACGCCCATGTAG 60.668 50.000 0.00 0.00 30.75 2.74
379 380 2.552315 CAAAAGAACACGCCCATGTAGT 59.448 45.455 0.00 0.00 30.75 2.73
380 381 2.094762 AAGAACACGCCCATGTAGTC 57.905 50.000 0.00 0.00 30.75 2.59
381 382 1.267121 AGAACACGCCCATGTAGTCT 58.733 50.000 0.00 0.00 30.75 3.24
382 383 2.453521 AGAACACGCCCATGTAGTCTA 58.546 47.619 0.00 0.00 30.75 2.59
383 384 2.829720 AGAACACGCCCATGTAGTCTAA 59.170 45.455 0.00 0.00 30.75 2.10
384 385 3.259876 AGAACACGCCCATGTAGTCTAAA 59.740 43.478 0.00 0.00 30.75 1.85
385 386 3.906720 ACACGCCCATGTAGTCTAAAT 57.093 42.857 0.00 0.00 0.00 1.40
386 387 3.531538 ACACGCCCATGTAGTCTAAATG 58.468 45.455 3.28 3.28 0.00 2.32
387 388 2.872245 CACGCCCATGTAGTCTAAATGG 59.128 50.000 19.08 19.08 40.53 3.16
392 393 2.880890 CCATGTAGTCTAAATGGGCAGC 59.119 50.000 18.46 0.00 37.74 5.25
393 394 3.544684 CATGTAGTCTAAATGGGCAGCA 58.455 45.455 2.37 0.00 0.00 4.41
394 395 3.931907 TGTAGTCTAAATGGGCAGCAT 57.068 42.857 0.00 0.00 0.00 3.79
395 396 4.235079 TGTAGTCTAAATGGGCAGCATT 57.765 40.909 0.00 0.00 0.00 3.56
396 397 4.199310 TGTAGTCTAAATGGGCAGCATTC 58.801 43.478 0.00 0.00 0.00 2.67
397 398 3.370840 AGTCTAAATGGGCAGCATTCA 57.629 42.857 0.00 0.00 0.00 2.57
398 399 3.285484 AGTCTAAATGGGCAGCATTCAG 58.715 45.455 0.00 0.00 0.00 3.02
399 400 3.019564 GTCTAAATGGGCAGCATTCAGT 58.980 45.455 0.00 0.00 0.00 3.41
400 401 3.018856 TCTAAATGGGCAGCATTCAGTG 58.981 45.455 0.00 0.00 0.00 3.66
401 402 1.636148 AAATGGGCAGCATTCAGTGT 58.364 45.000 0.00 0.00 0.00 3.55
402 403 0.892755 AATGGGCAGCATTCAGTGTG 59.107 50.000 0.00 0.00 0.00 3.82
403 404 0.968901 ATGGGCAGCATTCAGTGTGG 60.969 55.000 0.00 0.00 0.00 4.17
404 405 2.570181 GGCAGCATTCAGTGTGGC 59.430 61.111 0.00 0.00 0.00 5.01
405 406 2.570181 GCAGCATTCAGTGTGGCC 59.430 61.111 0.00 0.00 0.00 5.36
406 407 2.998279 GCAGCATTCAGTGTGGCCC 61.998 63.158 0.00 0.00 0.00 5.80
407 408 1.604308 CAGCATTCAGTGTGGCCCA 60.604 57.895 0.00 0.00 0.00 5.36
408 409 0.968901 CAGCATTCAGTGTGGCCCAT 60.969 55.000 0.00 0.00 0.00 4.00
409 410 0.625316 AGCATTCAGTGTGGCCCATA 59.375 50.000 0.00 0.00 0.00 2.74
410 411 1.216175 AGCATTCAGTGTGGCCCATAT 59.784 47.619 0.00 0.00 0.00 1.78
411 412 1.610522 GCATTCAGTGTGGCCCATATC 59.389 52.381 0.00 0.00 0.00 1.63
412 413 1.875514 CATTCAGTGTGGCCCATATCG 59.124 52.381 0.00 0.00 0.00 2.92
413 414 1.199615 TTCAGTGTGGCCCATATCGA 58.800 50.000 0.00 0.00 0.00 3.59
414 415 0.464036 TCAGTGTGGCCCATATCGAC 59.536 55.000 0.00 0.00 0.00 4.20
415 416 0.177836 CAGTGTGGCCCATATCGACA 59.822 55.000 0.00 0.00 0.00 4.35
416 417 1.131638 AGTGTGGCCCATATCGACAT 58.868 50.000 0.00 0.00 0.00 3.06
417 418 1.202687 AGTGTGGCCCATATCGACATG 60.203 52.381 0.00 0.00 0.00 3.21
418 419 0.836606 TGTGGCCCATATCGACATGT 59.163 50.000 0.00 0.00 0.00 3.21
419 420 1.211703 TGTGGCCCATATCGACATGTT 59.788 47.619 0.00 0.00 0.00 2.71
420 421 2.436173 TGTGGCCCATATCGACATGTTA 59.564 45.455 0.00 0.00 0.00 2.41
421 422 3.067106 GTGGCCCATATCGACATGTTAG 58.933 50.000 0.00 0.00 0.00 2.34
422 423 2.076863 GGCCCATATCGACATGTTAGC 58.923 52.381 2.51 2.72 0.00 3.09
826 827 8.925161 TCATTTTTATAGCACCTTATTTGCAC 57.075 30.769 0.00 0.00 42.83 4.57
827 828 7.700234 TCATTTTTATAGCACCTTATTTGCACG 59.300 33.333 0.00 0.00 42.83 5.34
828 829 6.503589 TTTTATAGCACCTTATTTGCACGT 57.496 33.333 0.00 0.00 42.83 4.49
829 830 6.503589 TTTATAGCACCTTATTTGCACGTT 57.496 33.333 0.00 0.00 42.83 3.99
830 831 2.989422 AGCACCTTATTTGCACGTTC 57.011 45.000 0.00 0.00 42.83 3.95
831 832 2.226330 AGCACCTTATTTGCACGTTCA 58.774 42.857 0.00 0.00 42.83 3.18
832 833 2.819608 AGCACCTTATTTGCACGTTCAT 59.180 40.909 0.00 0.00 42.83 2.57
833 834 2.916716 GCACCTTATTTGCACGTTCATG 59.083 45.455 0.00 0.00 39.93 3.07
834 835 3.611530 GCACCTTATTTGCACGTTCATGT 60.612 43.478 0.00 0.00 39.93 3.21
835 836 4.158384 CACCTTATTTGCACGTTCATGTC 58.842 43.478 0.00 0.00 0.00 3.06
836 837 3.818210 ACCTTATTTGCACGTTCATGTCA 59.182 39.130 0.00 0.00 0.00 3.58
837 838 4.277174 ACCTTATTTGCACGTTCATGTCAA 59.723 37.500 0.00 0.00 0.00 3.18
838 839 4.853196 CCTTATTTGCACGTTCATGTCAAG 59.147 41.667 0.00 0.00 0.00 3.02
839 840 3.988379 ATTTGCACGTTCATGTCAAGT 57.012 38.095 0.00 0.00 0.00 3.16
840 841 3.773860 TTTGCACGTTCATGTCAAGTT 57.226 38.095 0.00 0.00 0.00 2.66
841 842 3.773860 TTGCACGTTCATGTCAAGTTT 57.226 38.095 0.00 0.00 0.00 2.66
842 843 3.773860 TGCACGTTCATGTCAAGTTTT 57.226 38.095 0.00 0.00 0.00 2.43
843 844 4.103365 TGCACGTTCATGTCAAGTTTTT 57.897 36.364 0.00 0.00 0.00 1.94
844 845 5.236655 TGCACGTTCATGTCAAGTTTTTA 57.763 34.783 0.00 0.00 0.00 1.52
845 846 5.641709 TGCACGTTCATGTCAAGTTTTTAA 58.358 33.333 0.00 0.00 0.00 1.52
846 847 6.093404 TGCACGTTCATGTCAAGTTTTTAAA 58.907 32.000 0.00 0.00 0.00 1.52
847 848 6.754209 TGCACGTTCATGTCAAGTTTTTAAAT 59.246 30.769 0.00 0.00 0.00 1.40
848 849 7.043722 TGCACGTTCATGTCAAGTTTTTAAATC 60.044 33.333 0.00 0.00 0.00 2.17
849 850 7.043722 GCACGTTCATGTCAAGTTTTTAAATCA 60.044 33.333 0.00 0.00 0.00 2.57
850 851 8.471457 CACGTTCATGTCAAGTTTTTAAATCAG 58.529 33.333 0.00 0.00 0.00 2.90
851 852 8.188139 ACGTTCATGTCAAGTTTTTAAATCAGT 58.812 29.630 0.00 0.00 0.00 3.41
852 853 9.019764 CGTTCATGTCAAGTTTTTAAATCAGTT 57.980 29.630 0.00 0.00 0.00 3.16
854 855 8.781067 TCATGTCAAGTTTTTAAATCAGTTCG 57.219 30.769 0.00 0.00 0.00 3.95
855 856 7.860373 TCATGTCAAGTTTTTAAATCAGTTCGG 59.140 33.333 0.00 0.00 0.00 4.30
856 857 5.974751 TGTCAAGTTTTTAAATCAGTTCGGC 59.025 36.000 0.00 0.00 0.00 5.54
857 858 5.974751 GTCAAGTTTTTAAATCAGTTCGGCA 59.025 36.000 0.00 0.00 0.00 5.69
858 859 6.640907 GTCAAGTTTTTAAATCAGTTCGGCAT 59.359 34.615 0.00 0.00 0.00 4.40
859 860 7.806014 GTCAAGTTTTTAAATCAGTTCGGCATA 59.194 33.333 0.00 0.00 0.00 3.14
860 861 8.519526 TCAAGTTTTTAAATCAGTTCGGCATAT 58.480 29.630 0.00 0.00 0.00 1.78
861 862 9.139174 CAAGTTTTTAAATCAGTTCGGCATATT 57.861 29.630 0.00 0.00 0.00 1.28
862 863 8.911247 AGTTTTTAAATCAGTTCGGCATATTC 57.089 30.769 0.00 0.00 0.00 1.75
863 864 8.739972 AGTTTTTAAATCAGTTCGGCATATTCT 58.260 29.630 0.00 0.00 0.00 2.40
864 865 9.353999 GTTTTTAAATCAGTTCGGCATATTCTT 57.646 29.630 0.00 0.00 0.00 2.52
865 866 9.567848 TTTTTAAATCAGTTCGGCATATTCTTC 57.432 29.630 0.00 0.00 0.00 2.87
866 867 7.857734 TTAAATCAGTTCGGCATATTCTTCA 57.142 32.000 0.00 0.00 0.00 3.02
867 868 6.757897 AAATCAGTTCGGCATATTCTTCAA 57.242 33.333 0.00 0.00 0.00 2.69
868 869 5.998454 ATCAGTTCGGCATATTCTTCAAG 57.002 39.130 0.00 0.00 0.00 3.02
869 870 4.832248 TCAGTTCGGCATATTCTTCAAGT 58.168 39.130 0.00 0.00 0.00 3.16
870 871 5.245531 TCAGTTCGGCATATTCTTCAAGTT 58.754 37.500 0.00 0.00 0.00 2.66
871 872 5.351465 TCAGTTCGGCATATTCTTCAAGTTC 59.649 40.000 0.00 0.00 0.00 3.01
872 873 5.122239 CAGTTCGGCATATTCTTCAAGTTCA 59.878 40.000 0.00 0.00 0.00 3.18
873 874 5.705441 AGTTCGGCATATTCTTCAAGTTCAA 59.295 36.000 0.00 0.00 0.00 2.69
874 875 6.206634 AGTTCGGCATATTCTTCAAGTTCAAA 59.793 34.615 0.00 0.00 0.00 2.69
875 876 5.938322 TCGGCATATTCTTCAAGTTCAAAC 58.062 37.500 0.00 0.00 0.00 2.93
876 877 5.471797 TCGGCATATTCTTCAAGTTCAAACA 59.528 36.000 0.00 0.00 0.00 2.83
877 878 6.150976 TCGGCATATTCTTCAAGTTCAAACAT 59.849 34.615 0.00 0.00 0.00 2.71
878 879 6.808212 CGGCATATTCTTCAAGTTCAAACATT 59.192 34.615 0.00 0.00 0.00 2.71
879 880 7.967854 CGGCATATTCTTCAAGTTCAAACATTA 59.032 33.333 0.00 0.00 0.00 1.90
880 881 9.638239 GGCATATTCTTCAAGTTCAAACATTAA 57.362 29.630 0.00 0.00 0.00 1.40
887 888 9.567848 TCTTCAAGTTCAAACATTAAAGTGAAC 57.432 29.630 7.18 7.18 46.58 3.18
896 897 9.462174 TCAAACATTAAAGTGAACATCAATGAC 57.538 29.630 0.00 0.00 0.00 3.06
897 898 9.247126 CAAACATTAAAGTGAACATCAATGACA 57.753 29.630 0.00 0.00 0.00 3.58
898 899 9.814899 AAACATTAAAGTGAACATCAATGACAA 57.185 25.926 0.00 0.00 0.00 3.18
899 900 9.467258 AACATTAAAGTGAACATCAATGACAAG 57.533 29.630 0.00 0.00 0.00 3.16
900 901 8.632679 ACATTAAAGTGAACATCAATGACAAGT 58.367 29.630 0.00 0.00 0.00 3.16
901 902 9.467258 CATTAAAGTGAACATCAATGACAAGTT 57.533 29.630 0.00 0.00 0.00 2.66
905 906 9.520204 AAAGTGAACATCAATGACAAGTTTAAG 57.480 29.630 0.00 0.00 0.00 1.85
906 907 8.225603 AGTGAACATCAATGACAAGTTTAAGT 57.774 30.769 0.00 0.00 0.00 2.24
907 908 9.337396 AGTGAACATCAATGACAAGTTTAAGTA 57.663 29.630 0.00 0.00 0.00 2.24
912 913 9.507329 ACATCAATGACAAGTTTAAGTATCACT 57.493 29.630 0.00 0.00 0.00 3.41
944 945 2.758423 ACATTTATTTTGGGACGGAGGC 59.242 45.455 0.00 0.00 0.00 4.70
946 947 4.204012 CATTTATTTTGGGACGGAGGCTA 58.796 43.478 0.00 0.00 0.00 3.93
947 948 2.994186 TATTTTGGGACGGAGGCTAC 57.006 50.000 0.00 0.00 0.00 3.58
948 949 0.988832 ATTTTGGGACGGAGGCTACA 59.011 50.000 0.00 0.00 0.00 2.74
949 950 0.766131 TTTTGGGACGGAGGCTACAA 59.234 50.000 0.00 0.00 0.00 2.41
951 952 0.539986 TTGGGACGGAGGCTACAATC 59.460 55.000 0.00 0.00 0.00 2.67
953 954 1.063492 TGGGACGGAGGCTACAATCTA 60.063 52.381 0.00 0.00 0.00 1.98
954 955 1.614413 GGGACGGAGGCTACAATCTAG 59.386 57.143 0.00 0.00 0.00 2.43
1197 1416 1.080435 ATCTCTCGTGTACGCGTCGA 61.080 55.000 26.44 18.62 39.60 4.20
1315 1535 2.864343 CTCGATTTCGCCGTAAAGGATT 59.136 45.455 0.00 0.00 43.43 3.01
1316 1536 3.264104 TCGATTTCGCCGTAAAGGATTT 58.736 40.909 0.00 0.00 43.43 2.17
1317 1537 4.431809 TCGATTTCGCCGTAAAGGATTTA 58.568 39.130 0.00 0.00 43.43 1.40
1318 1538 4.869297 TCGATTTCGCCGTAAAGGATTTAA 59.131 37.500 0.00 0.00 39.83 1.52
1319 1539 5.350914 TCGATTTCGCCGTAAAGGATTTAAA 59.649 36.000 0.00 0.00 39.83 1.52
1320 1540 6.037391 TCGATTTCGCCGTAAAGGATTTAAAT 59.963 34.615 0.00 0.00 39.83 1.40
1321 1541 7.224362 TCGATTTCGCCGTAAAGGATTTAAATA 59.776 33.333 0.00 0.00 39.83 1.40
1322 1542 8.013378 CGATTTCGCCGTAAAGGATTTAAATAT 58.987 33.333 0.00 0.00 43.05 1.28
1377 1597 4.142026 TGCATGTACGGCTAGTAGAATTGT 60.142 41.667 0.00 0.00 35.72 2.71
1386 1615 5.619086 CGGCTAGTAGAATTGTTTTGTTGGG 60.619 44.000 0.00 0.00 0.00 4.12
1387 1616 5.336451 GGCTAGTAGAATTGTTTTGTTGGGG 60.336 44.000 0.00 0.00 0.00 4.96
1393 1622 6.000246 AGAATTGTTTTGTTGGGGTTTGAT 58.000 33.333 0.00 0.00 0.00 2.57
1417 1646 3.187842 AGAAAATTAGTTCGGGTGTTCGC 59.812 43.478 0.00 0.00 32.50 4.70
1446 1677 5.353938 CCCTATGTGATTTGCAAATGGAAG 58.646 41.667 28.67 16.53 0.00 3.46
1447 1678 5.127519 CCCTATGTGATTTGCAAATGGAAGA 59.872 40.000 28.67 12.86 0.00 2.87
1455 1686 9.674824 GTGATTTGCAAATGGAAGAGATTATAG 57.325 33.333 28.67 0.00 0.00 1.31
1457 1688 9.890352 GATTTGCAAATGGAAGAGATTATAGAC 57.110 33.333 28.67 4.75 0.00 2.59
1458 1689 7.482654 TTGCAAATGGAAGAGATTATAGACG 57.517 36.000 0.00 0.00 0.00 4.18
1488 1719 4.015872 AGCTGAAGAACCCGTGAAATTA 57.984 40.909 0.00 0.00 0.00 1.40
1499 1730 3.875134 CCCGTGAAATTACAGTGTATCCC 59.125 47.826 3.28 0.00 0.00 3.85
1500 1731 3.875134 CCGTGAAATTACAGTGTATCCCC 59.125 47.826 3.28 0.00 0.00 4.81
1504 1735 6.628621 CGTGAAATTACAGTGTATCCCCACTA 60.629 42.308 3.28 0.00 43.70 2.74
1541 1772 4.117685 GTCGGTATTGGTAGGACATTGTC 58.882 47.826 8.34 8.34 0.00 3.18
1553 1784 6.651225 GGTAGGACATTGTCATTAATAGAGCC 59.349 42.308 18.09 3.85 33.68 4.70
1564 1795 6.931281 GTCATTAATAGAGCCATAACTGCAGA 59.069 38.462 23.35 0.00 0.00 4.26
1571 1802 4.157289 AGAGCCATAACTGCAGATGTTTTG 59.843 41.667 23.35 10.44 0.00 2.44
1592 1823 2.340210 TCAGTGTTTACAGCCAAGCA 57.660 45.000 0.00 0.00 0.00 3.91
1598 1829 3.059665 GTGTTTACAGCCAAGCAAAATGC 60.060 43.478 0.00 0.00 45.46 3.56
1621 1852 1.262950 CAGCGTTCGTCACCATTTCAA 59.737 47.619 0.00 0.00 0.00 2.69
1624 1855 3.124636 AGCGTTCGTCACCATTTCAATAC 59.875 43.478 0.00 0.00 0.00 1.89
1629 1860 3.376859 TCGTCACCATTTCAATACCATGC 59.623 43.478 0.00 0.00 0.00 4.06
1631 1862 4.574421 CGTCACCATTTCAATACCATGCTA 59.426 41.667 0.00 0.00 0.00 3.49
1633 1864 6.238731 CGTCACCATTTCAATACCATGCTATT 60.239 38.462 0.00 0.00 0.00 1.73
1649 1881 6.015688 CCATGCTATTAAGATGCAGATGGTTT 60.016 38.462 0.00 0.00 40.18 3.27
1652 1884 6.138761 GCTATTAAGATGCAGATGGTTTTCG 58.861 40.000 0.00 0.00 0.00 3.46
1660 1892 1.872952 CAGATGGTTTTCGCTGTCACA 59.127 47.619 0.00 0.00 0.00 3.58
1669 1901 5.444087 GGTTTTCGCTGTCACAAAAAGTTTC 60.444 40.000 0.00 0.00 0.00 2.78
1683 1915 3.945640 AAGTTTCAACTACAGGGTGGT 57.054 42.857 0.00 0.00 38.57 4.16
1770 2007 1.739466 TCAATCGATCAACTTGCTGCC 59.261 47.619 0.00 0.00 0.00 4.85
1783 2020 3.191371 ACTTGCTGCCTATTTGTAAGTGC 59.809 43.478 0.00 0.00 35.83 4.40
1800 2037 0.874390 TGCCGACTTTCTTGACATGC 59.126 50.000 0.00 0.00 0.00 4.06
1847 2084 5.153513 ACAACACGTGCTTAATTGCTTATG 58.846 37.500 17.22 0.00 0.00 1.90
1967 2207 3.314388 GACGCAAAGCCCGAGCAAG 62.314 63.158 0.00 0.00 43.56 4.01
2106 2346 0.817634 TGCGTTTGCTAGCACCTGTT 60.818 50.000 19.17 0.00 43.34 3.16
2186 2433 2.272797 CCTCTCCTCGTCCGACCT 59.727 66.667 0.00 0.00 0.00 3.85
2345 2592 1.583556 TTGCTGGCTCTTCCTATGGA 58.416 50.000 0.00 0.00 35.26 3.41
2451 2698 1.294780 GGTGACTGTGAGCAGGAGG 59.705 63.158 0.00 0.00 46.62 4.30
2586 2833 0.169672 CAAGCTTTCTGATGCACGGG 59.830 55.000 0.00 0.00 0.00 5.28
2603 2850 2.695666 ACGGGTAGATCAGATTGTGGAG 59.304 50.000 0.00 0.00 0.00 3.86
2932 3179 0.385974 CCGCCGTTTTCTTGCTTGAG 60.386 55.000 0.00 0.00 0.00 3.02
3017 3264 2.480845 GTACATGGATTAGGTGACGCC 58.519 52.381 0.00 0.00 37.58 5.68
3224 3471 3.973206 TCCTTTCTCGACCTTATTGCA 57.027 42.857 0.00 0.00 0.00 4.08
3437 3684 0.543277 TTCGCTGCCAGATTCCTCAT 59.457 50.000 0.00 0.00 0.00 2.90
3635 3894 1.180456 TTGCATCACCCAACTGCCAG 61.180 55.000 0.00 0.00 35.02 4.85
4052 5411 3.785859 GATGTGAGGAGCCCGCCA 61.786 66.667 0.00 0.00 0.00 5.69
4273 5632 1.153369 CCGATGGCCAGTGATCGTT 60.153 57.895 21.55 0.00 39.88 3.85
4316 5677 1.746220 GCTCTACCAGCTTCTTCTCGA 59.254 52.381 0.00 0.00 45.83 4.04
4325 5688 5.171476 CCAGCTTCTTCTCGAAAACTATCA 58.829 41.667 0.00 0.00 0.00 2.15
4343 5713 6.926313 ACTATCACTTCCAACAGAGACTTAC 58.074 40.000 0.00 0.00 0.00 2.34
4711 6091 4.510711 GCTTGAGATACATGATGTGTCCTG 59.489 45.833 17.09 7.60 38.99 3.86
4721 6101 3.073678 TGATGTGTCCTGTTGAATTCGG 58.926 45.455 0.04 0.00 0.00 4.30
4728 6108 0.953471 CTGTTGAATTCGGCCGGTCA 60.953 55.000 27.83 22.55 0.00 4.02
4743 6123 1.609208 GGTCAGTGTGAACAAGGCAT 58.391 50.000 0.00 0.00 33.38 4.40
4744 6124 1.956477 GGTCAGTGTGAACAAGGCATT 59.044 47.619 0.00 0.00 33.38 3.56
4798 6181 1.577134 CGAAGTGTGTTTTGTTGTGCG 59.423 47.619 0.00 0.00 0.00 5.34
4835 6218 2.158885 GCCTCAGAAGGAAGGTATCACC 60.159 54.545 0.00 0.00 46.67 4.02
4878 6264 4.883585 TGTGTGATTGCTCTTGGGATATTC 59.116 41.667 0.00 0.00 0.00 1.75
4880 6266 4.141733 TGTGATTGCTCTTGGGATATTCGA 60.142 41.667 0.00 0.00 0.00 3.71
4995 6492 3.120199 CCAGTGCTTTGCTGTGTATGTAC 60.120 47.826 0.00 0.00 32.41 2.90
4997 6494 2.478894 GTGCTTTGCTGTGTATGTACGT 59.521 45.455 0.00 0.00 0.00 3.57
5074 6571 3.872696 TCACGGTTGATGCACATCTAAT 58.127 40.909 11.66 0.00 38.60 1.73
5078 6575 5.466393 CACGGTTGATGCACATCTAATATGA 59.534 40.000 11.66 0.00 38.60 2.15
5082 6579 7.358066 GGTTGATGCACATCTAATATGACAAG 58.642 38.462 11.66 0.00 38.60 3.16
5146 6643 7.491372 TGAAATATCACTTCACCGTTCATACTC 59.509 37.037 0.00 0.00 0.00 2.59
5157 6654 1.521423 GTTCATACTCCGTATGCGCAC 59.479 52.381 14.90 0.00 43.72 5.34
5196 6693 5.285651 TGAAATTCAAAACACATTCCCGTC 58.714 37.500 0.00 0.00 0.00 4.79
5207 6704 1.126113 CATTCCCGTCGAAAGAACACG 59.874 52.381 0.00 0.00 45.01 4.49
5220 6717 5.841296 CGAAAGAACACGAATTTCTCAGTTC 59.159 40.000 13.21 13.21 38.27 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.979534 ACTTTAATGGAGGGAGTAGTAGTAAAG 58.020 37.037 0.00 0.00 34.08 1.85
40 41 2.355310 CCACGGGTGCAATTACCTCTTA 60.355 50.000 0.00 0.00 40.66 2.10
41 42 1.613255 CCACGGGTGCAATTACCTCTT 60.613 52.381 0.00 0.00 40.66 2.85
42 43 0.035439 CCACGGGTGCAATTACCTCT 60.035 55.000 0.00 0.00 40.66 3.69
43 44 0.322187 ACCACGGGTGCAATTACCTC 60.322 55.000 0.00 0.00 40.66 3.85
44 45 1.765074 ACCACGGGTGCAATTACCT 59.235 52.632 0.00 0.00 40.66 3.08
45 46 4.408378 ACCACGGGTGCAATTACC 57.592 55.556 0.00 0.00 40.10 2.85
54 55 1.314730 CAAGTTTAAGCACCACGGGT 58.685 50.000 0.00 0.00 35.62 5.28
55 56 0.039527 GCAAGTTTAAGCACCACGGG 60.040 55.000 0.00 0.00 0.00 5.28
56 57 0.039527 GGCAAGTTTAAGCACCACGG 60.040 55.000 0.00 0.00 0.00 4.94
57 58 0.665835 TGGCAAGTTTAAGCACCACG 59.334 50.000 0.00 0.00 0.00 4.94
58 59 1.269569 GGTGGCAAGTTTAAGCACCAC 60.270 52.381 15.97 15.97 45.41 4.16
59 60 1.036707 GGTGGCAAGTTTAAGCACCA 58.963 50.000 0.00 0.00 34.36 4.17
60 61 1.036707 TGGTGGCAAGTTTAAGCACC 58.963 50.000 0.00 0.00 34.60 5.01
61 62 2.880963 TTGGTGGCAAGTTTAAGCAC 57.119 45.000 0.00 0.00 0.00 4.40
62 63 5.736951 AATATTGGTGGCAAGTTTAAGCA 57.263 34.783 0.00 0.00 0.00 3.91
63 64 7.320399 AGTAAATATTGGTGGCAAGTTTAAGC 58.680 34.615 0.00 0.00 0.00 3.09
64 65 9.705290 AAAGTAAATATTGGTGGCAAGTTTAAG 57.295 29.630 0.00 0.00 0.00 1.85
67 68 8.866093 ACTAAAGTAAATATTGGTGGCAAGTTT 58.134 29.630 0.00 0.00 0.00 2.66
68 69 8.417273 ACTAAAGTAAATATTGGTGGCAAGTT 57.583 30.769 0.00 0.00 0.00 2.66
69 70 9.695155 ATACTAAAGTAAATATTGGTGGCAAGT 57.305 29.630 0.00 0.00 33.76 3.16
71 72 9.914834 AGATACTAAAGTAAATATTGGTGGCAA 57.085 29.630 0.00 0.00 33.76 4.52
72 73 9.337396 CAGATACTAAAGTAAATATTGGTGGCA 57.663 33.333 0.00 0.00 33.76 4.92
73 74 9.555727 TCAGATACTAAAGTAAATATTGGTGGC 57.444 33.333 0.00 0.00 33.76 5.01
97 98 9.883142 ACCAGTTCAATTTATTTTTCAAGTTCA 57.117 25.926 0.00 0.00 0.00 3.18
111 112 8.929487 TCCCAAGTTTTATAACCAGTTCAATTT 58.071 29.630 0.00 0.00 34.71 1.82
112 113 8.364894 GTCCCAAGTTTTATAACCAGTTCAATT 58.635 33.333 0.00 0.00 34.71 2.32
113 114 7.308951 CGTCCCAAGTTTTATAACCAGTTCAAT 60.309 37.037 0.00 0.00 34.71 2.57
114 115 6.016943 CGTCCCAAGTTTTATAACCAGTTCAA 60.017 38.462 0.00 0.00 34.71 2.69
115 116 5.470777 CGTCCCAAGTTTTATAACCAGTTCA 59.529 40.000 0.00 0.00 34.71 3.18
116 117 5.702209 TCGTCCCAAGTTTTATAACCAGTTC 59.298 40.000 0.00 0.00 34.71 3.01
117 118 5.623169 TCGTCCCAAGTTTTATAACCAGTT 58.377 37.500 0.00 0.00 34.71 3.16
118 119 5.231702 TCGTCCCAAGTTTTATAACCAGT 57.768 39.130 0.00 0.00 34.71 4.00
119 120 4.094442 GCTCGTCCCAAGTTTTATAACCAG 59.906 45.833 0.00 0.00 34.71 4.00
120 121 4.004982 GCTCGTCCCAAGTTTTATAACCA 58.995 43.478 0.00 0.00 34.71 3.67
121 122 3.063045 CGCTCGTCCCAAGTTTTATAACC 59.937 47.826 0.00 0.00 34.71 2.85
122 123 3.484721 GCGCTCGTCCCAAGTTTTATAAC 60.485 47.826 0.00 0.00 34.36 1.89
123 124 2.674357 GCGCTCGTCCCAAGTTTTATAA 59.326 45.455 0.00 0.00 0.00 0.98
124 125 2.273557 GCGCTCGTCCCAAGTTTTATA 58.726 47.619 0.00 0.00 0.00 0.98
125 126 1.084289 GCGCTCGTCCCAAGTTTTAT 58.916 50.000 0.00 0.00 0.00 1.40
126 127 1.286354 CGCGCTCGTCCCAAGTTTTA 61.286 55.000 5.56 0.00 0.00 1.52
127 128 2.604174 CGCGCTCGTCCCAAGTTTT 61.604 57.895 5.56 0.00 0.00 2.43
128 129 3.041940 CGCGCTCGTCCCAAGTTT 61.042 61.111 5.56 0.00 0.00 2.66
141 142 0.941542 TAATGGAATTAGCACCGCGC 59.058 50.000 0.00 0.00 37.87 6.86
175 176 2.809696 GAGGTGGCACGCTAAGTAAAAA 59.190 45.455 12.17 0.00 39.78 1.94
176 177 2.224329 TGAGGTGGCACGCTAAGTAAAA 60.224 45.455 12.17 0.00 39.78 1.52
177 178 1.345089 TGAGGTGGCACGCTAAGTAAA 59.655 47.619 12.17 0.00 39.78 2.01
178 179 0.970640 TGAGGTGGCACGCTAAGTAA 59.029 50.000 12.17 0.00 39.78 2.24
179 180 1.191535 ATGAGGTGGCACGCTAAGTA 58.808 50.000 12.17 0.00 39.78 2.24
180 181 1.137086 CTATGAGGTGGCACGCTAAGT 59.863 52.381 12.17 2.86 39.78 2.24
181 182 1.858091 CTATGAGGTGGCACGCTAAG 58.142 55.000 12.17 1.54 39.78 2.18
182 183 0.179084 GCTATGAGGTGGCACGCTAA 60.179 55.000 12.17 3.60 39.78 3.09
183 184 1.326951 TGCTATGAGGTGGCACGCTA 61.327 55.000 12.17 0.00 39.62 4.26
184 185 2.187946 GCTATGAGGTGGCACGCT 59.812 61.111 12.17 9.91 39.78 5.07
185 186 2.125147 TGCTATGAGGTGGCACGC 60.125 61.111 12.17 8.74 39.62 5.34
189 190 3.260380 AGAGACATATGCTATGAGGTGGC 59.740 47.826 1.58 0.00 34.40 5.01
190 191 6.379417 TCATAGAGACATATGCTATGAGGTGG 59.621 42.308 19.48 3.15 43.14 4.61
191 192 7.257003 GTCATAGAGACATATGCTATGAGGTG 58.743 42.308 21.99 7.23 46.45 4.00
192 193 7.403312 GTCATAGAGACATATGCTATGAGGT 57.597 40.000 21.99 0.00 46.45 3.85
206 207 2.569404 GGGATCCATGGGTCATAGAGAC 59.431 54.545 26.30 6.97 46.83 3.36
207 208 2.182088 TGGGATCCATGGGTCATAGAGA 59.818 50.000 26.30 0.00 0.00 3.10
208 209 2.304180 GTGGGATCCATGGGTCATAGAG 59.696 54.545 26.30 0.00 35.28 2.43
209 210 2.338809 GTGGGATCCATGGGTCATAGA 58.661 52.381 26.30 3.95 35.28 1.98
210 211 1.352352 GGTGGGATCCATGGGTCATAG 59.648 57.143 26.30 0.00 35.28 2.23
211 212 1.060640 AGGTGGGATCCATGGGTCATA 60.061 52.381 26.30 11.62 35.28 2.15
212 213 0.328842 AGGTGGGATCCATGGGTCAT 60.329 55.000 26.30 5.66 35.28 3.06
213 214 1.084652 AGGTGGGATCCATGGGTCA 59.915 57.895 26.30 4.67 35.28 4.02
214 215 1.281925 ACAGGTGGGATCCATGGGTC 61.282 60.000 17.40 17.40 35.28 4.46
215 216 1.230281 ACAGGTGGGATCCATGGGT 60.230 57.895 15.23 3.70 35.28 4.51
216 217 1.281199 TGACAGGTGGGATCCATGGG 61.281 60.000 15.23 0.98 35.28 4.00
217 218 0.182061 CTGACAGGTGGGATCCATGG 59.818 60.000 15.23 4.97 35.28 3.66
218 219 0.182061 CCTGACAGGTGGGATCCATG 59.818 60.000 15.23 8.89 35.28 3.66
219 220 2.625252 CCTGACAGGTGGGATCCAT 58.375 57.895 15.23 0.00 35.28 3.41
220 221 4.152248 CCTGACAGGTGGGATCCA 57.848 61.111 15.23 0.00 0.00 3.41
229 230 0.901124 CTTCCCTCTGACCTGACAGG 59.099 60.000 20.45 20.45 42.49 4.00
230 231 1.930251 TCTTCCCTCTGACCTGACAG 58.070 55.000 0.00 0.00 39.02 3.51
231 232 2.630889 ATCTTCCCTCTGACCTGACA 57.369 50.000 0.00 0.00 0.00 3.58
232 233 3.133183 GGTAATCTTCCCTCTGACCTGAC 59.867 52.174 0.00 0.00 0.00 3.51
233 234 3.245984 TGGTAATCTTCCCTCTGACCTGA 60.246 47.826 0.00 0.00 0.00 3.86
234 235 3.107601 TGGTAATCTTCCCTCTGACCTG 58.892 50.000 0.00 0.00 0.00 4.00
235 236 3.491766 TGGTAATCTTCCCTCTGACCT 57.508 47.619 0.00 0.00 0.00 3.85
236 237 3.243907 CGATGGTAATCTTCCCTCTGACC 60.244 52.174 0.00 0.00 0.00 4.02
237 238 3.637229 TCGATGGTAATCTTCCCTCTGAC 59.363 47.826 0.00 0.00 0.00 3.51
238 239 3.637229 GTCGATGGTAATCTTCCCTCTGA 59.363 47.826 0.00 0.00 0.00 3.27
239 240 3.639094 AGTCGATGGTAATCTTCCCTCTG 59.361 47.826 0.00 0.00 0.00 3.35
240 241 3.639094 CAGTCGATGGTAATCTTCCCTCT 59.361 47.826 0.00 0.00 0.00 3.69
241 242 3.243907 CCAGTCGATGGTAATCTTCCCTC 60.244 52.174 0.00 0.00 44.91 4.30
242 243 2.700897 CCAGTCGATGGTAATCTTCCCT 59.299 50.000 0.00 0.00 44.91 4.20
243 244 3.113260 CCAGTCGATGGTAATCTTCCC 57.887 52.381 0.00 0.00 44.91 3.97
254 255 2.692557 AGATCTCCTGTTCCAGTCGATG 59.307 50.000 0.00 0.00 0.00 3.84
255 256 2.955660 GAGATCTCCTGTTCCAGTCGAT 59.044 50.000 12.00 0.00 0.00 3.59
256 257 2.290960 TGAGATCTCCTGTTCCAGTCGA 60.291 50.000 20.03 0.00 0.00 4.20
257 258 2.095461 TGAGATCTCCTGTTCCAGTCG 58.905 52.381 20.03 0.00 0.00 4.18
258 259 3.096092 AGTGAGATCTCCTGTTCCAGTC 58.904 50.000 20.03 0.00 0.00 3.51
259 260 3.096092 GAGTGAGATCTCCTGTTCCAGT 58.904 50.000 20.03 2.87 0.00 4.00
260 261 2.098934 CGAGTGAGATCTCCTGTTCCAG 59.901 54.545 20.03 0.25 0.00 3.86
261 262 2.095461 CGAGTGAGATCTCCTGTTCCA 58.905 52.381 20.03 0.00 0.00 3.53
262 263 2.096248 ACGAGTGAGATCTCCTGTTCC 58.904 52.381 20.03 4.42 0.00 3.62
263 264 2.733858 GCACGAGTGAGATCTCCTGTTC 60.734 54.545 20.03 10.66 0.00 3.18
264 265 1.203523 GCACGAGTGAGATCTCCTGTT 59.796 52.381 20.03 2.85 0.00 3.16
265 266 0.814457 GCACGAGTGAGATCTCCTGT 59.186 55.000 20.03 9.89 0.00 4.00
266 267 0.248417 CGCACGAGTGAGATCTCCTG 60.248 60.000 20.03 9.28 31.84 3.86
267 268 0.393132 TCGCACGAGTGAGATCTCCT 60.393 55.000 20.03 15.60 34.53 3.69
268 269 0.248296 GTCGCACGAGTGAGATCTCC 60.248 60.000 20.03 11.17 41.22 3.71
269 270 0.730265 AGTCGCACGAGTGAGATCTC 59.270 55.000 16.21 16.21 41.22 2.75
270 271 1.937223 CTAGTCGCACGAGTGAGATCT 59.063 52.381 12.40 12.76 41.22 2.75
271 272 1.595976 GCTAGTCGCACGAGTGAGATC 60.596 57.143 12.40 7.07 41.22 2.75
272 273 0.378962 GCTAGTCGCACGAGTGAGAT 59.621 55.000 12.40 5.39 41.22 2.75
273 274 0.673956 AGCTAGTCGCACGAGTGAGA 60.674 55.000 10.54 6.49 42.61 3.27
274 275 1.004398 CTAGCTAGTCGCACGAGTGAG 60.004 57.143 12.92 3.86 42.61 3.51
275 276 1.007580 CTAGCTAGTCGCACGAGTGA 58.992 55.000 12.92 0.00 42.61 3.41
276 277 0.590230 GCTAGCTAGTCGCACGAGTG 60.590 60.000 21.62 0.00 42.61 3.51
277 278 1.025113 TGCTAGCTAGTCGCACGAGT 61.025 55.000 21.62 5.62 42.61 4.18
278 279 0.590230 GTGCTAGCTAGTCGCACGAG 60.590 60.000 21.62 0.00 43.63 4.18
279 280 1.428219 GTGCTAGCTAGTCGCACGA 59.572 57.895 21.62 0.00 43.63 4.35
280 281 3.984241 GTGCTAGCTAGTCGCACG 58.016 61.111 21.62 0.00 43.63 5.34
282 283 2.423898 GGGGTGCTAGCTAGTCGCA 61.424 63.158 21.62 12.05 42.61 5.10
283 284 1.956629 TTGGGGTGCTAGCTAGTCGC 61.957 60.000 21.62 20.03 39.57 5.19
284 285 0.179108 GTTGGGGTGCTAGCTAGTCG 60.179 60.000 21.62 0.00 0.00 4.18
285 286 1.196012 AGTTGGGGTGCTAGCTAGTC 58.804 55.000 21.62 14.14 0.00 2.59
286 287 1.279271 CAAGTTGGGGTGCTAGCTAGT 59.721 52.381 21.62 0.00 0.00 2.57
287 288 2.014068 GCAAGTTGGGGTGCTAGCTAG 61.014 57.143 16.84 16.84 37.78 3.42
288 289 0.035439 GCAAGTTGGGGTGCTAGCTA 60.035 55.000 17.23 0.00 37.78 3.32
289 290 1.303643 GCAAGTTGGGGTGCTAGCT 60.304 57.895 17.23 0.00 37.78 3.32
290 291 0.967380 ATGCAAGTTGGGGTGCTAGC 60.967 55.000 8.10 8.10 41.48 3.42
291 292 2.418368 TATGCAAGTTGGGGTGCTAG 57.582 50.000 4.75 0.00 41.48 3.42
292 293 2.889170 TTATGCAAGTTGGGGTGCTA 57.111 45.000 4.75 0.00 41.48 3.49
293 294 1.826720 CATTATGCAAGTTGGGGTGCT 59.173 47.619 4.75 0.00 41.48 4.40
294 295 1.550072 ACATTATGCAAGTTGGGGTGC 59.450 47.619 4.75 0.00 41.29 5.01
295 296 3.235157 CACATTATGCAAGTTGGGGTG 57.765 47.619 4.75 0.00 0.00 4.61
307 308 1.667236 TCCTTGCGAGGCACATTATG 58.333 50.000 16.01 0.00 43.21 1.90
308 309 2.645838 ATCCTTGCGAGGCACATTAT 57.354 45.000 16.01 0.00 43.21 1.28
309 310 2.169561 TGTATCCTTGCGAGGCACATTA 59.830 45.455 16.01 0.00 43.21 1.90
310 311 1.065491 TGTATCCTTGCGAGGCACATT 60.065 47.619 16.01 0.22 43.21 2.71
311 312 0.541392 TGTATCCTTGCGAGGCACAT 59.459 50.000 16.01 6.51 43.21 3.21
312 313 0.541392 ATGTATCCTTGCGAGGCACA 59.459 50.000 22.48 22.48 43.21 4.57
313 314 2.526304 TATGTATCCTTGCGAGGCAC 57.474 50.000 16.01 15.19 43.21 5.01
314 315 2.899900 AGATATGTATCCTTGCGAGGCA 59.100 45.455 16.01 8.19 43.21 4.75
315 316 3.601443 AGATATGTATCCTTGCGAGGC 57.399 47.619 16.01 1.91 43.21 4.70
316 317 7.604164 ACATAAAAGATATGTATCCTTGCGAGG 59.396 37.037 14.59 14.59 39.07 4.63
317 318 8.539770 ACATAAAAGATATGTATCCTTGCGAG 57.460 34.615 0.00 0.00 36.49 5.03
318 319 8.367911 AGACATAAAAGATATGTATCCTTGCGA 58.632 33.333 1.36 0.00 38.18 5.10
319 320 8.539770 AGACATAAAAGATATGTATCCTTGCG 57.460 34.615 1.36 0.00 38.18 4.85
332 333 8.015658 GCGTGTTCTTAACAAGACATAAAAGAT 58.984 33.333 9.42 0.00 44.16 2.40
333 334 7.011576 TGCGTGTTCTTAACAAGACATAAAAGA 59.988 33.333 9.42 0.00 44.16 2.52
334 335 7.129622 TGCGTGTTCTTAACAAGACATAAAAG 58.870 34.615 9.42 0.00 44.16 2.27
335 336 7.017498 TGCGTGTTCTTAACAAGACATAAAA 57.983 32.000 9.42 0.00 44.16 1.52
336 337 6.606234 TGCGTGTTCTTAACAAGACATAAA 57.394 33.333 9.42 0.00 44.16 1.40
337 338 6.606234 TTGCGTGTTCTTAACAAGACATAA 57.394 33.333 9.42 0.00 44.16 1.90
338 339 6.606234 TTTGCGTGTTCTTAACAAGACATA 57.394 33.333 9.42 1.49 44.16 2.29
339 340 5.493133 TTTGCGTGTTCTTAACAAGACAT 57.507 34.783 9.42 0.00 44.16 3.06
340 341 4.948608 TTTGCGTGTTCTTAACAAGACA 57.051 36.364 9.42 4.88 44.16 3.41
341 342 5.565695 TCTTTTGCGTGTTCTTAACAAGAC 58.434 37.500 9.42 2.76 44.16 3.01
342 343 5.804692 TCTTTTGCGTGTTCTTAACAAGA 57.195 34.783 9.42 0.00 44.16 3.02
343 344 5.797934 TGTTCTTTTGCGTGTTCTTAACAAG 59.202 36.000 1.98 1.98 44.16 3.16
344 345 5.569823 GTGTTCTTTTGCGTGTTCTTAACAA 59.430 36.000 0.00 0.00 44.16 2.83
345 346 5.090083 GTGTTCTTTTGCGTGTTCTTAACA 58.910 37.500 0.00 0.00 39.52 2.41
346 347 4.201558 CGTGTTCTTTTGCGTGTTCTTAAC 59.798 41.667 0.00 0.00 0.00 2.01
347 348 4.336101 CGTGTTCTTTTGCGTGTTCTTAA 58.664 39.130 0.00 0.00 0.00 1.85
348 349 3.786161 GCGTGTTCTTTTGCGTGTTCTTA 60.786 43.478 0.00 0.00 0.00 2.10
349 350 2.780993 CGTGTTCTTTTGCGTGTTCTT 58.219 42.857 0.00 0.00 0.00 2.52
350 351 1.531058 GCGTGTTCTTTTGCGTGTTCT 60.531 47.619 0.00 0.00 0.00 3.01
351 352 0.837605 GCGTGTTCTTTTGCGTGTTC 59.162 50.000 0.00 0.00 0.00 3.18
352 353 0.524604 GGCGTGTTCTTTTGCGTGTT 60.525 50.000 0.00 0.00 0.00 3.32
353 354 1.063488 GGCGTGTTCTTTTGCGTGT 59.937 52.632 0.00 0.00 0.00 4.49
354 355 1.657181 GGGCGTGTTCTTTTGCGTG 60.657 57.895 0.00 0.00 0.00 5.34
355 356 1.452145 ATGGGCGTGTTCTTTTGCGT 61.452 50.000 0.00 0.00 0.00 5.24
356 357 1.003262 CATGGGCGTGTTCTTTTGCG 61.003 55.000 0.00 0.00 0.00 4.85
357 358 0.031994 ACATGGGCGTGTTCTTTTGC 59.968 50.000 0.00 0.00 0.00 3.68
358 359 2.552315 ACTACATGGGCGTGTTCTTTTG 59.448 45.455 0.00 0.00 33.62 2.44
359 360 2.812011 GACTACATGGGCGTGTTCTTTT 59.188 45.455 0.00 0.00 33.62 2.27
360 361 2.038557 AGACTACATGGGCGTGTTCTTT 59.961 45.455 0.00 0.00 33.62 2.52
361 362 1.623811 AGACTACATGGGCGTGTTCTT 59.376 47.619 0.00 0.00 33.62 2.52
362 363 1.267121 AGACTACATGGGCGTGTTCT 58.733 50.000 0.00 0.00 33.62 3.01
363 364 2.953466 TAGACTACATGGGCGTGTTC 57.047 50.000 0.00 0.00 33.62 3.18
364 365 3.688694 TTTAGACTACATGGGCGTGTT 57.311 42.857 0.00 0.00 33.62 3.32
365 366 3.531538 CATTTAGACTACATGGGCGTGT 58.468 45.455 0.00 0.00 36.13 4.49
366 367 2.872245 CCATTTAGACTACATGGGCGTG 59.128 50.000 16.91 0.00 34.80 5.34
367 368 3.194005 CCATTTAGACTACATGGGCGT 57.806 47.619 16.91 0.00 34.80 5.68
371 372 2.880890 GCTGCCCATTTAGACTACATGG 59.119 50.000 17.53 17.53 37.76 3.66
372 373 3.544684 TGCTGCCCATTTAGACTACATG 58.455 45.455 0.00 2.15 0.00 3.21
373 374 3.931907 TGCTGCCCATTTAGACTACAT 57.068 42.857 0.00 0.00 0.00 2.29
374 375 3.931907 ATGCTGCCCATTTAGACTACA 57.068 42.857 0.00 0.00 0.00 2.74
375 376 4.199310 TGAATGCTGCCCATTTAGACTAC 58.801 43.478 0.00 0.00 44.02 2.73
376 377 4.080356 ACTGAATGCTGCCCATTTAGACTA 60.080 41.667 19.19 0.00 45.49 2.59
377 378 3.285484 CTGAATGCTGCCCATTTAGACT 58.715 45.455 11.29 0.00 45.49 3.24
378 379 3.019564 ACTGAATGCTGCCCATTTAGAC 58.980 45.455 19.19 2.84 45.49 2.59
379 380 3.018856 CACTGAATGCTGCCCATTTAGA 58.981 45.455 19.19 2.20 45.49 2.10
381 382 2.492881 CACACTGAATGCTGCCCATTTA 59.507 45.455 0.00 0.00 44.02 1.40
382 383 1.274167 CACACTGAATGCTGCCCATTT 59.726 47.619 0.00 0.00 44.02 2.32
383 384 0.892755 CACACTGAATGCTGCCCATT 59.107 50.000 0.00 0.00 46.57 3.16
384 385 0.968901 CCACACTGAATGCTGCCCAT 60.969 55.000 0.00 0.00 35.06 4.00
385 386 1.604308 CCACACTGAATGCTGCCCA 60.604 57.895 0.00 0.00 0.00 5.36
386 387 2.998279 GCCACACTGAATGCTGCCC 61.998 63.158 0.00 0.00 0.00 5.36
387 388 2.570181 GCCACACTGAATGCTGCC 59.430 61.111 0.00 0.00 0.00 4.85
388 389 2.570181 GGCCACACTGAATGCTGC 59.430 61.111 0.00 0.00 0.00 5.25
389 390 0.968901 ATGGGCCACACTGAATGCTG 60.969 55.000 9.28 0.00 0.00 4.41
390 391 0.625316 TATGGGCCACACTGAATGCT 59.375 50.000 9.28 0.00 0.00 3.79
391 392 1.610522 GATATGGGCCACACTGAATGC 59.389 52.381 9.28 0.00 0.00 3.56
392 393 1.875514 CGATATGGGCCACACTGAATG 59.124 52.381 9.28 0.00 0.00 2.67
393 394 1.768275 TCGATATGGGCCACACTGAAT 59.232 47.619 9.28 0.00 0.00 2.57
394 395 1.134521 GTCGATATGGGCCACACTGAA 60.135 52.381 9.28 0.00 0.00 3.02
395 396 0.464036 GTCGATATGGGCCACACTGA 59.536 55.000 9.28 1.64 0.00 3.41
396 397 0.177836 TGTCGATATGGGCCACACTG 59.822 55.000 9.28 0.00 0.00 3.66
397 398 1.131638 ATGTCGATATGGGCCACACT 58.868 50.000 9.28 0.00 0.00 3.55
398 399 1.229428 CATGTCGATATGGGCCACAC 58.771 55.000 9.28 1.88 0.00 3.82
399 400 0.836606 ACATGTCGATATGGGCCACA 59.163 50.000 23.75 0.00 32.32 4.17
400 401 1.967319 AACATGTCGATATGGGCCAC 58.033 50.000 23.75 0.00 32.32 5.01
401 402 2.549992 GCTAACATGTCGATATGGGCCA 60.550 50.000 23.75 9.61 32.32 5.36
402 403 2.076863 GCTAACATGTCGATATGGGCC 58.923 52.381 23.75 0.00 32.32 5.80
403 404 3.045601 AGCTAACATGTCGATATGGGC 57.954 47.619 23.75 21.76 32.32 5.36
404 405 7.490962 TTTAAAGCTAACATGTCGATATGGG 57.509 36.000 23.75 14.76 32.32 4.00
800 801 9.533253 GTGCAAATAAGGTGCTATAAAAATGAT 57.467 29.630 0.00 0.00 42.69 2.45
801 802 7.700234 CGTGCAAATAAGGTGCTATAAAAATGA 59.300 33.333 0.00 0.00 42.69 2.57
802 803 7.487829 ACGTGCAAATAAGGTGCTATAAAAATG 59.512 33.333 0.00 0.00 42.69 2.32
803 804 7.543756 ACGTGCAAATAAGGTGCTATAAAAAT 58.456 30.769 0.00 0.00 42.69 1.82
804 805 6.915349 ACGTGCAAATAAGGTGCTATAAAAA 58.085 32.000 0.00 0.00 42.69 1.94
805 806 6.503589 ACGTGCAAATAAGGTGCTATAAAA 57.496 33.333 0.00 0.00 42.69 1.52
806 807 6.149640 TGAACGTGCAAATAAGGTGCTATAAA 59.850 34.615 0.00 0.00 42.69 1.40
807 808 5.644206 TGAACGTGCAAATAAGGTGCTATAA 59.356 36.000 0.00 0.00 42.69 0.98
808 809 5.179533 TGAACGTGCAAATAAGGTGCTATA 58.820 37.500 0.00 0.00 42.69 1.31
809 810 4.006989 TGAACGTGCAAATAAGGTGCTAT 58.993 39.130 0.00 0.00 42.69 2.97
810 811 3.403968 TGAACGTGCAAATAAGGTGCTA 58.596 40.909 0.00 0.00 42.69 3.49
811 812 2.226330 TGAACGTGCAAATAAGGTGCT 58.774 42.857 0.00 0.00 42.69 4.40
812 813 2.697431 TGAACGTGCAAATAAGGTGC 57.303 45.000 0.00 0.00 42.55 5.01
813 814 4.158384 GACATGAACGTGCAAATAAGGTG 58.842 43.478 0.00 0.00 0.00 4.00
814 815 3.818210 TGACATGAACGTGCAAATAAGGT 59.182 39.130 0.00 0.00 0.00 3.50
815 816 4.418013 TGACATGAACGTGCAAATAAGG 57.582 40.909 0.00 0.00 0.00 2.69
816 817 5.451908 ACTTGACATGAACGTGCAAATAAG 58.548 37.500 0.00 6.01 0.00 1.73
817 818 5.431420 ACTTGACATGAACGTGCAAATAA 57.569 34.783 0.00 0.00 0.00 1.40
818 819 5.431420 AACTTGACATGAACGTGCAAATA 57.569 34.783 0.00 0.00 0.00 1.40
819 820 3.988379 ACTTGACATGAACGTGCAAAT 57.012 38.095 0.00 0.00 0.00 2.32
820 821 3.773860 AACTTGACATGAACGTGCAAA 57.226 38.095 0.00 0.00 0.00 3.68
821 822 3.773860 AAACTTGACATGAACGTGCAA 57.226 38.095 0.00 0.00 0.00 4.08
822 823 3.773860 AAAACTTGACATGAACGTGCA 57.226 38.095 0.00 0.00 0.00 4.57
823 824 6.561945 TTTAAAAACTTGACATGAACGTGC 57.438 33.333 0.00 0.00 0.00 5.34
824 825 8.334016 TGATTTAAAAACTTGACATGAACGTG 57.666 30.769 0.00 0.00 0.00 4.49
825 826 8.188139 ACTGATTTAAAAACTTGACATGAACGT 58.812 29.630 0.00 0.00 0.00 3.99
826 827 8.560576 ACTGATTTAAAAACTTGACATGAACG 57.439 30.769 0.00 0.00 0.00 3.95
828 829 9.232082 CGAACTGATTTAAAAACTTGACATGAA 57.768 29.630 0.00 0.00 0.00 2.57
829 830 7.860373 CCGAACTGATTTAAAAACTTGACATGA 59.140 33.333 0.00 0.00 0.00 3.07
830 831 7.358352 GCCGAACTGATTTAAAAACTTGACATG 60.358 37.037 0.00 0.00 0.00 3.21
831 832 6.640907 GCCGAACTGATTTAAAAACTTGACAT 59.359 34.615 0.00 0.00 0.00 3.06
832 833 5.974751 GCCGAACTGATTTAAAAACTTGACA 59.025 36.000 0.00 0.00 0.00 3.58
833 834 5.974751 TGCCGAACTGATTTAAAAACTTGAC 59.025 36.000 0.00 0.00 0.00 3.18
834 835 6.137794 TGCCGAACTGATTTAAAAACTTGA 57.862 33.333 0.00 0.00 0.00 3.02
835 836 8.687824 ATATGCCGAACTGATTTAAAAACTTG 57.312 30.769 0.00 0.00 0.00 3.16
836 837 9.353999 GAATATGCCGAACTGATTTAAAAACTT 57.646 29.630 0.00 0.00 0.00 2.66
837 838 8.739972 AGAATATGCCGAACTGATTTAAAAACT 58.260 29.630 0.00 0.00 0.00 2.66
838 839 8.911247 AGAATATGCCGAACTGATTTAAAAAC 57.089 30.769 0.00 0.00 0.00 2.43
839 840 9.567848 GAAGAATATGCCGAACTGATTTAAAAA 57.432 29.630 0.00 0.00 0.00 1.94
840 841 8.735315 TGAAGAATATGCCGAACTGATTTAAAA 58.265 29.630 0.00 0.00 0.00 1.52
841 842 8.275015 TGAAGAATATGCCGAACTGATTTAAA 57.725 30.769 0.00 0.00 0.00 1.52
842 843 7.857734 TGAAGAATATGCCGAACTGATTTAA 57.142 32.000 0.00 0.00 0.00 1.52
843 844 7.552687 ACTTGAAGAATATGCCGAACTGATTTA 59.447 33.333 0.00 0.00 0.00 1.40
844 845 6.375455 ACTTGAAGAATATGCCGAACTGATTT 59.625 34.615 0.00 0.00 0.00 2.17
845 846 5.882557 ACTTGAAGAATATGCCGAACTGATT 59.117 36.000 0.00 0.00 0.00 2.57
846 847 5.431765 ACTTGAAGAATATGCCGAACTGAT 58.568 37.500 0.00 0.00 0.00 2.90
847 848 4.832248 ACTTGAAGAATATGCCGAACTGA 58.168 39.130 0.00 0.00 0.00 3.41
848 849 5.122239 TGAACTTGAAGAATATGCCGAACTG 59.878 40.000 0.00 0.00 0.00 3.16
849 850 5.245531 TGAACTTGAAGAATATGCCGAACT 58.754 37.500 0.00 0.00 0.00 3.01
850 851 5.545658 TGAACTTGAAGAATATGCCGAAC 57.454 39.130 0.00 0.00 0.00 3.95
851 852 6.016693 TGTTTGAACTTGAAGAATATGCCGAA 60.017 34.615 0.00 0.00 0.00 4.30
852 853 5.471797 TGTTTGAACTTGAAGAATATGCCGA 59.528 36.000 0.00 0.00 0.00 5.54
853 854 5.698832 TGTTTGAACTTGAAGAATATGCCG 58.301 37.500 0.00 0.00 0.00 5.69
854 855 9.638239 TTAATGTTTGAACTTGAAGAATATGCC 57.362 29.630 0.00 0.00 0.00 4.40
861 862 9.567848 GTTCACTTTAATGTTTGAACTTGAAGA 57.432 29.630 0.00 0.00 42.96 2.87
862 863 9.352784 TGTTCACTTTAATGTTTGAACTTGAAG 57.647 29.630 17.94 0.00 45.34 3.02
863 864 9.868277 ATGTTCACTTTAATGTTTGAACTTGAA 57.132 25.926 17.94 5.23 45.34 2.69
864 865 9.515020 GATGTTCACTTTAATGTTTGAACTTGA 57.485 29.630 17.94 6.30 45.34 3.02
865 866 9.299963 TGATGTTCACTTTAATGTTTGAACTTG 57.700 29.630 17.94 0.00 45.34 3.16
866 867 9.868277 TTGATGTTCACTTTAATGTTTGAACTT 57.132 25.926 17.94 14.21 45.34 2.66
870 871 9.462174 GTCATTGATGTTCACTTTAATGTTTGA 57.538 29.630 9.01 0.00 32.54 2.69
871 872 9.247126 TGTCATTGATGTTCACTTTAATGTTTG 57.753 29.630 9.01 0.00 32.54 2.93
872 873 9.814899 TTGTCATTGATGTTCACTTTAATGTTT 57.185 25.926 9.01 0.00 32.54 2.83
873 874 9.467258 CTTGTCATTGATGTTCACTTTAATGTT 57.533 29.630 9.01 0.00 32.54 2.71
874 875 8.632679 ACTTGTCATTGATGTTCACTTTAATGT 58.367 29.630 9.01 0.00 32.54 2.71
875 876 9.467258 AACTTGTCATTGATGTTCACTTTAATG 57.533 29.630 0.00 4.73 32.19 1.90
879 880 9.520204 CTTAAACTTGTCATTGATGTTCACTTT 57.480 29.630 0.00 0.00 0.00 2.66
880 881 8.686334 ACTTAAACTTGTCATTGATGTTCACTT 58.314 29.630 0.00 0.00 0.00 3.16
881 882 8.225603 ACTTAAACTTGTCATTGATGTTCACT 57.774 30.769 0.00 0.00 0.00 3.41
886 887 9.507329 AGTGATACTTAAACTTGTCATTGATGT 57.493 29.630 0.00 0.00 0.00 3.06
910 911 9.927668 CCCAAAATAAATGTGACTGAATTTAGT 57.072 29.630 1.93 1.93 33.12 2.24
912 913 9.921637 GTCCCAAAATAAATGTGACTGAATTTA 57.078 29.630 0.00 0.00 33.88 1.40
913 914 7.598493 CGTCCCAAAATAAATGTGACTGAATTT 59.402 33.333 0.00 0.00 0.00 1.82
916 917 5.048364 CCGTCCCAAAATAAATGTGACTGAA 60.048 40.000 0.00 0.00 0.00 3.02
922 923 3.428862 GCCTCCGTCCCAAAATAAATGTG 60.429 47.826 0.00 0.00 0.00 3.21
944 945 1.131638 TGGGCTGGGCTAGATTGTAG 58.868 55.000 0.43 0.00 0.00 2.74
946 947 1.207488 TGTGGGCTGGGCTAGATTGT 61.207 55.000 0.43 0.00 0.00 2.71
947 948 0.034186 TTGTGGGCTGGGCTAGATTG 60.034 55.000 0.43 0.00 0.00 2.67
948 949 0.034089 GTTGTGGGCTGGGCTAGATT 60.034 55.000 0.43 0.00 0.00 2.40
949 950 1.207488 TGTTGTGGGCTGGGCTAGAT 61.207 55.000 0.43 0.00 0.00 1.98
951 952 0.962356 CTTGTTGTGGGCTGGGCTAG 60.962 60.000 0.00 0.00 0.00 3.42
953 954 2.203538 CTTGTTGTGGGCTGGGCT 60.204 61.111 0.00 0.00 0.00 5.19
954 955 3.994853 GCTTGTTGTGGGCTGGGC 61.995 66.667 0.00 0.00 0.00 5.36
1082 1301 1.817099 GAGGAGGATGCAGGCGTTG 60.817 63.158 0.00 0.00 0.00 4.10
1083 1302 1.841302 TTGAGGAGGATGCAGGCGTT 61.841 55.000 0.00 0.00 0.00 4.84
1084 1303 2.249413 CTTGAGGAGGATGCAGGCGT 62.249 60.000 0.00 0.00 0.00 5.68
1085 1304 1.523258 CTTGAGGAGGATGCAGGCG 60.523 63.158 0.00 0.00 0.00 5.52
1086 1305 4.555610 CTTGAGGAGGATGCAGGC 57.444 61.111 0.00 0.00 0.00 4.85
1128 1347 1.552792 GGTTCAGGTGAAGAGGAGGAG 59.447 57.143 0.00 0.00 34.27 3.69
1129 1348 1.645710 GGTTCAGGTGAAGAGGAGGA 58.354 55.000 0.00 0.00 34.27 3.71
1130 1349 0.615850 GGGTTCAGGTGAAGAGGAGG 59.384 60.000 0.00 0.00 34.27 4.30
1169 1388 1.822506 ACACGAGAGATGAACGAGGA 58.177 50.000 0.00 0.00 0.00 3.71
1277 1497 8.015658 CGAAATCGAGTGAAAAATCTAAACCTT 58.984 33.333 0.00 0.00 43.02 3.50
1315 1535 8.208903 GGTTCCAAGGCTCAGTAGTATATTTAA 58.791 37.037 0.00 0.00 0.00 1.52
1316 1536 7.202066 GGGTTCCAAGGCTCAGTAGTATATTTA 60.202 40.741 0.00 0.00 0.00 1.40
1317 1537 6.409349 GGGTTCCAAGGCTCAGTAGTATATTT 60.409 42.308 0.00 0.00 0.00 1.40
1318 1538 5.071923 GGGTTCCAAGGCTCAGTAGTATATT 59.928 44.000 0.00 0.00 0.00 1.28
1319 1539 4.593634 GGGTTCCAAGGCTCAGTAGTATAT 59.406 45.833 0.00 0.00 0.00 0.86
1320 1540 3.965347 GGGTTCCAAGGCTCAGTAGTATA 59.035 47.826 0.00 0.00 0.00 1.47
1321 1541 2.772515 GGGTTCCAAGGCTCAGTAGTAT 59.227 50.000 0.00 0.00 0.00 2.12
1322 1542 2.185387 GGGTTCCAAGGCTCAGTAGTA 58.815 52.381 0.00 0.00 0.00 1.82
1386 1615 7.753580 CACCCGAACTAATTTTCTTATCAAACC 59.246 37.037 0.00 0.00 0.00 3.27
1387 1616 8.294577 ACACCCGAACTAATTTTCTTATCAAAC 58.705 33.333 0.00 0.00 0.00 2.93
1393 1622 5.106987 GCGAACACCCGAACTAATTTTCTTA 60.107 40.000 0.00 0.00 0.00 2.10
1417 1646 2.218603 GCAAATCACATAGGGGTACGG 58.781 52.381 0.00 0.00 0.00 4.02
1446 1677 4.924462 GCTTTGGGTAGCGTCTATAATCTC 59.076 45.833 0.00 0.00 0.00 2.75
1447 1678 4.589374 AGCTTTGGGTAGCGTCTATAATCT 59.411 41.667 0.00 0.00 45.82 2.40
1455 1686 1.079503 CTTCAGCTTTGGGTAGCGTC 58.920 55.000 0.00 0.00 45.82 5.19
1457 1688 1.464997 GTTCTTCAGCTTTGGGTAGCG 59.535 52.381 0.00 0.00 45.82 4.26
1458 1689 1.813178 GGTTCTTCAGCTTTGGGTAGC 59.187 52.381 0.00 0.00 41.53 3.58
1541 1772 7.389884 ACATCTGCAGTTATGGCTCTATTAATG 59.610 37.037 14.67 6.48 0.00 1.90
1553 1784 6.361481 CACTGAACAAAACATCTGCAGTTATG 59.639 38.462 14.67 13.45 33.29 1.90
1564 1795 5.105554 TGGCTGTAAACACTGAACAAAACAT 60.106 36.000 0.00 0.00 0.00 2.71
1571 1802 2.357637 TGCTTGGCTGTAAACACTGAAC 59.642 45.455 0.00 0.00 0.00 3.18
1592 1823 0.110823 GACGAACGCTGTCGCATTTT 60.111 50.000 5.88 0.00 45.00 1.82
1598 1829 1.282248 AATGGTGACGAACGCTGTCG 61.282 55.000 4.54 4.54 46.54 4.35
1599 1830 0.865769 AAATGGTGACGAACGCTGTC 59.134 50.000 0.00 0.00 36.88 3.51
1601 1832 0.865111 TGAAATGGTGACGAACGCTG 59.135 50.000 0.00 0.00 0.00 5.18
1608 1839 3.378112 AGCATGGTATTGAAATGGTGACG 59.622 43.478 0.00 0.00 31.21 4.35
1621 1852 6.827251 CCATCTGCATCTTAATAGCATGGTAT 59.173 38.462 11.64 11.64 37.68 2.73
1624 1855 5.008331 ACCATCTGCATCTTAATAGCATGG 58.992 41.667 11.77 11.77 41.72 3.66
1629 1860 6.017605 AGCGAAAACCATCTGCATCTTAATAG 60.018 38.462 0.00 0.00 0.00 1.73
1631 1862 4.641989 AGCGAAAACCATCTGCATCTTAAT 59.358 37.500 0.00 0.00 0.00 1.40
1633 1864 3.374988 CAGCGAAAACCATCTGCATCTTA 59.625 43.478 0.00 0.00 0.00 2.10
1649 1881 4.427096 TGAAACTTTTTGTGACAGCGAA 57.573 36.364 0.00 0.00 0.00 4.70
1652 1884 6.090129 TGTAGTTGAAACTTTTTGTGACAGC 58.910 36.000 0.21 0.00 40.37 4.40
1660 1892 5.020795 ACCACCCTGTAGTTGAAACTTTTT 58.979 37.500 0.21 0.00 40.37 1.94
1669 1901 2.938838 TGGAAAACCACCCTGTAGTTG 58.061 47.619 0.00 0.00 0.00 3.16
1770 2007 6.147164 TCAAGAAAGTCGGCACTTACAAATAG 59.853 38.462 0.00 0.00 42.45 1.73
1800 2037 6.924913 TCTCCAGATCTTGTATATCCCTTG 57.075 41.667 0.00 0.00 0.00 3.61
1887 2124 7.148390 GCAGAAAGGTTAGAAAGATTAGTCCAC 60.148 40.741 0.00 0.00 0.00 4.02
1967 2207 2.564947 AGAGACAGATGGGTCAGACAAC 59.435 50.000 2.17 0.00 40.29 3.32
2186 2433 2.308570 AGGGGCATCAACACAGACATTA 59.691 45.455 0.00 0.00 0.00 1.90
2345 2592 1.523258 GCGGCAGCAGATGAGATGT 60.523 57.895 3.18 0.00 44.35 3.06
2451 2698 0.400594 AGGGTGCCACCAAAGTAGAC 59.599 55.000 17.22 0.00 41.02 2.59
2586 2833 6.259608 CCATTGAACTCCACAATCTGATCTAC 59.740 42.308 0.00 0.00 36.07 2.59
2603 2850 2.159517 GGCGATGAACTGACCATTGAAC 60.160 50.000 0.00 0.00 0.00 3.18
2780 3027 5.065914 GGTGCTCCAAATGATAAGCTCATA 58.934 41.667 0.00 0.00 44.03 2.15
3224 3471 2.076863 GAACGACAGGTGCTAGCAAAT 58.923 47.619 21.29 8.17 0.00 2.32
3320 3567 0.893727 GGGCTTGGACACGGACATTT 60.894 55.000 0.00 0.00 0.00 2.32
3437 3684 2.226437 GCGCATCCTCTGAAAAGTTTCA 59.774 45.455 0.30 6.33 44.31 2.69
3635 3894 2.527951 ATCGGGTGCTGACAAGGAGC 62.528 60.000 0.00 0.00 41.16 4.70
4052 5411 2.824341 CTCTGGGCTCAAGCAAGAAAAT 59.176 45.455 4.13 0.00 44.36 1.82
4273 5632 0.698238 AAGCTGTAGTTGCCCCATCA 59.302 50.000 0.00 0.00 0.00 3.07
4316 5677 6.831976 AGTCTCTGTTGGAAGTGATAGTTTT 58.168 36.000 0.00 0.00 0.00 2.43
4325 5688 2.364324 TGCGTAAGTCTCTGTTGGAAGT 59.636 45.455 0.00 0.00 41.68 3.01
4463 5837 4.148696 CGACAAATTAACTGGCAAAAGCTG 59.851 41.667 0.00 0.00 0.00 4.24
4711 6091 0.953960 ACTGACCGGCCGAATTCAAC 60.954 55.000 30.73 9.75 0.00 3.18
4721 6101 1.507141 CCTTGTTCACACTGACCGGC 61.507 60.000 0.00 0.00 0.00 6.13
4798 6181 2.280628 GAGGCAGCAGTAACCATACAC 58.719 52.381 0.00 0.00 34.29 2.90
4835 6218 4.382457 CACAAACCAATCAAAGCATACACG 59.618 41.667 0.00 0.00 0.00 4.49
4907 6293 5.123027 AGCTTATCTGTGCTAGCAAAAGAAC 59.877 40.000 26.58 18.55 37.81 3.01
4908 6294 5.248640 AGCTTATCTGTGCTAGCAAAAGAA 58.751 37.500 26.58 15.34 37.81 2.52
4934 6321 3.140325 ACACAATCACCCAGGTTACAG 57.860 47.619 0.00 0.00 0.00 2.74
4995 6492 2.031245 TGCTGCCATGTTTGTTCTTACG 60.031 45.455 0.00 0.00 0.00 3.18
4997 6494 4.280425 TCATTGCTGCCATGTTTGTTCTTA 59.720 37.500 12.72 0.00 0.00 2.10
5050 6547 2.076100 GATGTGCATCAACCGTGAAGA 58.924 47.619 7.25 0.00 37.30 2.87
5078 6575 9.307121 CTCTGTATATCGTTTTCATCTTCTTGT 57.693 33.333 0.00 0.00 0.00 3.16
5082 6579 7.436673 ACAGCTCTGTATATCGTTTTCATCTTC 59.563 37.037 0.00 0.00 42.90 2.87
5146 6643 2.064573 TGATATCTGTGCGCATACGG 57.935 50.000 15.91 6.99 40.57 4.02
5157 6654 7.506328 TGAATTTCAGGCATCTTGATATCTG 57.494 36.000 3.98 0.00 0.00 2.90
5196 6693 5.330271 ACTGAGAAATTCGTGTTCTTTCG 57.670 39.130 0.00 0.00 35.46 3.46
5207 6704 3.596214 TGGCTACCGAACTGAGAAATTC 58.404 45.455 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.